RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9281
(152 letters)
>gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional.
Length = 257
Score = 162 bits (413), Expect = 5e-51
Identities = 62/107 (57%), Positives = 76/107 (71%)
Query: 36 LGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQF 95
LGGGCELAMMCDII A + AKFGQPEI +G +PG GG+QRLTRA GK+ AM++CLTG
Sbjct: 106 LGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCLTGRMM 165
Query: 96 TAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVN 142
A EA+ G+VS++ P +KLL+E + A I S V KEAVN
Sbjct: 166 DAAEAERAGLVSRVVPADKLLDEALAAATTIASFSLPAVMMAKEAVN 212
>gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family. This family
contains a diverse set of enzymes including: Enoyl-CoA
hydratase. Napthoate synthase. Carnitate racemase.
3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA
delta-isomerase.
Length = 245
Score = 147 bits (374), Expect = 2e-45
Identities = 56/114 (49%), Positives = 77/114 (67%)
Query: 36 LGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQF 95
LGGG ELA+ CD A + AKFG PE+ +G +PGAGGTQRL R G S A+E+ LTG +
Sbjct: 102 LGGGLELALACDYRIAADNAKFGLPEVKLGIIPGAGGTQRLPRIIGVSAALEMLLTGRRI 161
Query: 96 TAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVNIDDTEGL 149
AQEA +MG+V K+ P E+L+EE I+LA+R+ + PL + +K A+ + L
Sbjct: 162 RAQEALKMGLVDKVVPEEQLVEEAIELAQRLADKPPLALAALKAAMRAALEDAL 215
>gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional.
Length = 261
Score = 147 bits (373), Expect = 5e-45
Identities = 59/107 (55%), Positives = 70/107 (65%)
Query: 36 LGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQF 95
LGGGCELAM DII AGE A FGQPEI +G MPGAGGTQRL RA GK AM + LTG
Sbjct: 110 LGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALTGCMV 169
Query: 96 TAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVN 142
A EA +G+VS++ E+ L ++LA I PL + Q+KE V
Sbjct: 170 PAPEALAIGLVSEVVEDEQTLPRALELAREIARMPPLALAQIKEVVL 216
>gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional.
Length = 255
Score = 147 bits (372), Expect = 6e-45
Identities = 60/106 (56%), Positives = 80/106 (75%)
Query: 36 LGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQF 95
LG GCELA++CDI+ AGE A+FG PEI +G MPGAGGTQRL R+ GKS A ++ LTG
Sbjct: 104 LGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGESI 163
Query: 96 TAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAV 141
TAQ+A++ G+VS++FPPE LE ++LA +I HSPL + K+A+
Sbjct: 164 TAQQAQQAGLVSEVFPPELTLERALQLASKIARHSPLALRAAKQAL 209
>gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase
superfamily. This superfamily contains a diverse set of
enzymes including enoyl-CoA hydratase, napthoate
synthase, methylmalonyl-CoA decarboxylase,
3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA
isomerase. Many of these play important roles in fatty
acid metabolism. In addition to a conserved structural
core and the formation of trimers (or dimers of
trimers), a common feature in this superfamily is the
stabilization of an enolate anion intermediate derived
from an acyl-CoA substrate. This is accomplished by two
conserved backbone NH groups in active sites that form
an oxyanion hole.
Length = 195
Score = 128 bits (324), Expect = 2e-38
Identities = 47/91 (51%), Positives = 64/91 (70%)
Query: 36 LGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQF 95
LGGG ELA+ CDI A E AKFG PE+ +G +PG GGTQRL R G + A E+ LTG +
Sbjct: 105 LGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLTGRRI 164
Query: 96 TAQEAKEMGVVSKIFPPEKLLEETIKLAERI 126
+A+EA E+G+V ++ P E+LL ++LA R+
Sbjct: 165 SAEEALELGLVDEVVPDEELLAAALELARRL 195
>gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid
metabolism].
Length = 257
Score = 126 bits (318), Expect = 8e-37
Identities = 52/108 (48%), Positives = 68/108 (62%), Gaps = 2/108 (1%)
Query: 36 LGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQF 95
LGGG ELA+ CDI A E AKFG PE+ +G +PG GGTQRL R G+ A E+ LTG
Sbjct: 110 LGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPI 169
Query: 96 TAQEAKEMGVVSKIFPP-EKLLEETIKLAERIGEHSPLIVTQVKEAVN 142
+A EA E+G+V ++ P E+LLE ++LA R+ PL + K V
Sbjct: 170 SAAEALELGLVDEVVPDAEELLERALELARRLAA-PPLALAATKRLVR 216
>gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated.
Length = 260
Score = 118 bits (297), Expect = 1e-33
Identities = 56/107 (52%), Positives = 73/107 (68%)
Query: 36 LGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQF 95
LGGGCEL+M CDI A EKAKFGQPE+ +G PG GGTQRL R G A E+ TG+
Sbjct: 109 LGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKAKELIYTGDMI 168
Query: 96 TAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVN 142
A+EA +G+V+K+ PEKL+EE LA +I ++P+ V K+A+N
Sbjct: 169 NAEEALRIGLVNKVVEPEKLMEEAKALANKIAANAPIAVKLCKDAIN 215
>gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional.
Length = 259
Score = 116 bits (294), Expect = 4e-33
Identities = 37/107 (34%), Positives = 58/107 (54%)
Query: 36 LGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQF 95
+G G LA+ CD++YA E AKF P +G P AGG+ L R G++ A E+ L G
Sbjct: 108 VGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAEMLLLGEPL 167
Query: 96 TAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVN 142
+A+EA +G+V+++ P +L E A ++ + K A+N
Sbjct: 168 SAEEALRIGLVNRVVPAAELDAEADAQAAKLAAGPASALRYTKRAIN 214
>gnl|CDD|180335 PRK05980, PRK05980, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 113 bits (285), Expect = 8e-32
Identities = 52/117 (44%), Positives = 71/117 (60%), Gaps = 4/117 (3%)
Query: 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGN 93
+ GGGCE+ + A E+A F +PEI +G P GGTQRL R AG+ A+E+ LTG+
Sbjct: 110 LAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRALELLLTGD 169
Query: 94 QFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVNIDDTEGLN 150
F+A+ A E+G+V+ + P E+LL LA RI HSP+ V + AV T GLN
Sbjct: 170 AFSAERALEIGLVNAVVPHEELLPAARALARRIIRHSPVAVAAILTAV----TRGLN 222
>gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 112 bits (281), Expect = 3e-31
Identities = 51/109 (46%), Positives = 68/109 (62%)
Query: 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGN 93
I LGGG ELA+ CD A E A G E + +PGAGGTQRL R G A E+ TG
Sbjct: 107 IALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGR 166
Query: 94 QFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVN 142
+ +AQEAKE+G+V + P L E+ I++AE+I + P+ V Q KEA++
Sbjct: 167 RISAQEAKEIGLVEFVVPAHLLEEKAIEIAEKIASNGPIAVRQAKEAIS 215
>gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional.
Length = 257
Score = 107 bits (270), Expect = 1e-29
Identities = 50/107 (46%), Positives = 66/107 (61%)
Query: 36 LGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQF 95
LGGG ELAM C I +A E AK G PE+ +G +PG GTQRL R GK+ A+E+ LT
Sbjct: 106 LGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMMLTSEPI 165
Query: 96 TAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVN 142
T EA + G+V+ +FP E LL++ KLA++I SP V E +
Sbjct: 166 TGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGKSPATTRAVLELLQ 212
>gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional.
Length = 254
Score = 106 bits (267), Expect = 4e-29
Identities = 46/106 (43%), Positives = 63/106 (59%)
Query: 36 LGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQF 95
L GG ELA+ CD+I A AKFG PE+ G + GG RL R AME+ LTG+
Sbjct: 103 LAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDML 162
Query: 96 TAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAV 141
TA+ A E+G+V+++ P + L+ ++LAERI + PL V K V
Sbjct: 163 TAERAHELGLVNRLTEPGQALDAALELAERIAANGPLAVAASKRIV 208
>gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional.
Length = 259
Score = 103 bits (259), Expect = 6e-28
Identities = 45/106 (42%), Positives = 61/106 (57%)
Query: 36 LGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQF 95
+GGG ELA+ CD+I A E A F PE +G AGG RL R G AM + LTG +
Sbjct: 106 MGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRAMGMILTGRRV 165
Query: 96 TAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAV 141
TA+E E+G V+++ P +LL + A+ I SPL + K+AV
Sbjct: 166 TAREGLELGFVNEVVPAGELLAAAERWADDILACSPLSIRASKQAV 211
>gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase.
Length = 251
Score = 98.7 bits (246), Expect = 4e-26
Identities = 48/107 (44%), Positives = 68/107 (63%)
Query: 36 LGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQF 95
LGGG ELA+ CD+ GE+A FG PE + +PGAGGTQRL R G+S A E+ TG +
Sbjct: 100 LGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRI 159
Query: 96 TAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVN 142
A+EA MG+V+ P + E+ ++LA+ I + PL + K+A+N
Sbjct: 160 GAREAASMGLVNYCVPAGEAYEKALELAQEINQKGPLAIKMAKKAIN 206
>gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional.
Length = 261
Score = 98.6 bits (246), Expect = 5e-26
Identities = 36/116 (31%), Positives = 63/116 (54%), Gaps = 2/116 (1%)
Query: 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGN 93
GGG ELA+ D I + A F PE +G +P +GG RL + + A E+ +TG
Sbjct: 104 YAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTGR 163
Query: 94 QFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVNIDDTEGL 149
+ A+EA G+V+++ P +L++ +LA+++ +PL + +KE +T +
Sbjct: 164 RMDAEEALRWGIVNRVVPQAELMDRARELAQQLVNSAPLAIAALKEIYR--ETSEM 217
>gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional.
Length = 266
Score = 97.3 bits (243), Expect = 1e-25
Identities = 40/96 (41%), Positives = 56/96 (58%)
Query: 36 LGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQF 95
+G GC+LA MCDI A E A+F + + +G +PG GG L R G + A E+ TG+
Sbjct: 115 IGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIGMARAAEMAFTGDAI 174
Query: 96 TAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSP 131
A A E G+VS++ P ++LL LAERI + P
Sbjct: 175 DAATALEWGLVSRVVPADQLLPAARALAERIAANPP 210
>gnl|CDD|180625 PRK06563, PRK06563, enoyl-CoA hydratase; Provisional.
Length = 255
Score = 93.9 bits (234), Expect = 3e-24
Identities = 43/96 (44%), Positives = 59/96 (61%)
Query: 39 GCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQ 98
G EL + DI+ A + +F Q E+ G +P G T R +AAG NAM LTG++F AQ
Sbjct: 107 GIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLLTGDEFDAQ 166
Query: 99 EAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIV 134
EA +G+V ++ PP + LE I+LAERI +PL V
Sbjct: 167 EALRLGLVQEVVPPGEQLERAIELAERIARAAPLGV 202
>gnl|CDD|223524 COG0447, MenB, Dihydroxynaphthoic acid synthase [Coenzyme
metabolism].
Length = 282
Score = 90.6 bits (225), Expect = 9e-23
Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 1/113 (0%)
Query: 37 GGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFT 96
GGG L ++CD+ A + A FGQ +G+ G G+ L R G+ A EI Q+
Sbjct: 129 GGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYD 188
Query: 97 AQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVNIDDTEGL 149
A+EA +MG+V+ + P L +ET++ A + SP + +K A N D +GL
Sbjct: 189 AEEALDMGLVNTVVPHADLEKETVQWAREMLAKSPTALRMLKAAFNA-DCDGL 240
>gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional.
Length = 258
Score = 87.7 bits (218), Expect = 5e-22
Identities = 36/102 (35%), Positives = 57/102 (55%)
Query: 38 GGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTA 97
GG ELA+ CDI+ A E+A+F +G +PG G + RL + G A + LTG+ A
Sbjct: 108 GGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDA 167
Query: 98 QEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKE 139
+A G+V+++ P ++LL +LA I ++P V +K
Sbjct: 168 ADALRAGLVTEVVPHDELLPRARRLAASIAGNNPAAVRALKA 209
>gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA
hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase.
Length = 275
Score = 88.0 bits (218), Expect = 7e-22
Identities = 44/104 (42%), Positives = 61/104 (58%), Gaps = 1/104 (0%)
Query: 36 LGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQF 95
+GGG ++ CDI Y E A F E+ + G QRL G NAME+ LTG +F
Sbjct: 123 IGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGYGNAMELALTGRRF 182
Query: 96 TAQEAKEMGVVSKIFPPEKLLEETIKL-AERIGEHSPLIVTQVK 138
+ EAKE+G+VS++F ++ L+E ++L AE I SPL VT K
Sbjct: 183 SGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKSPLAVTGTK 226
>gnl|CDD|200143 TIGR01929, menB, naphthoate synthase (dihydroxynaphthoic acid
synthetase). This model represents an enzyme,
naphthoate synthase (dihydroxynaphthoic acid
synthetase), which is involved in the fifth step of the
menaquinone biosynthesis pathway. Together with
o-succinylbenzoate-CoA ligase (menE: TIGR01923), this
enzyme takes 2-succinylbenzoate and converts it into
1,4-di-hydroxy-2-naphthoate. Included above the trusted
cutoff are two enzymes from Arabadopsis thaliana and one
from Staphylococcus aureus which are identified as
putative enoyl-CoA hydratase/isomerases. These enzymes
group with the naphthoate synthases when building a tree
and when doing BLAST searches [Biosynthesis of
cofactors, prosthetic groups, and carriers, Menaquinone
and ubiquinone].
Length = 259
Score = 86.8 bits (215), Expect = 1e-21
Identities = 39/110 (35%), Positives = 62/110 (56%)
Query: 36 LGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQF 95
+GGG L MMCD+ A E A+FGQ +G+ G G+ + R G+ A EI Q+
Sbjct: 109 IGGGHVLHMMCDLTIAAENARFGQTGPKVGSFDGGYGSSYMARIVGQKKAREIWFLCRQY 168
Query: 96 TAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVNIDD 145
A++A +MG+V+ + P L +ET++ I + SP+ + +K A+N D
Sbjct: 169 DAKQALDMGLVNTVVPLADLEKETVRWCREILQKSPMAIRMLKAALNADC 218
>gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex
subunit alpha; Reviewed.
Length = 715
Score = 87.6 bits (218), Expect = 6e-21
Identities = 37/90 (41%), Positives = 49/90 (54%)
Query: 36 LGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQF 95
LGGGCE + D A A+ G PE +G MPG GGT RL R G NA+E G
Sbjct: 114 LGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGADNALEWIAAGKDV 173
Query: 96 TAQEAKEMGVVSKIFPPEKLLEETIKLAER 125
A++A ++G V + PEKL E + L ++
Sbjct: 174 RAEDALKVGAVDAVVAPEKLQEAALALLKQ 203
>gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional.
Length = 269
Score = 84.4 bits (209), Expect = 2e-20
Identities = 33/106 (31%), Positives = 52/106 (49%)
Query: 36 LGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQF 95
+GGG +A+ CDI A E ++FG P +G G G + L G S A ++ T +F
Sbjct: 118 IGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLFYTARRF 177
Query: 96 TAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAV 141
A EA +G+V ++ + L A I ++PL + K A+
Sbjct: 178 DAAEALRIGLVHRVTAADDLETALADYAATIAGNAPLTLRAAKRAI 223
>gnl|CDD|236220 PRK08290, PRK08290, enoyl-CoA hydratase; Provisional.
Length = 288
Score = 84.2 bits (209), Expect = 2e-20
Identities = 38/107 (35%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 38 GGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRA--AGKSNAMEICLTGNQF 95
GG LA +CD+I A + A F P + M G G + G A E+ TG++
Sbjct: 132 GGLMLAWVCDLIVASDDAFFSDP---VVRM-GIPGVEYFAHPWELGPRKAKELLFTGDRL 187
Query: 96 TAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVN 142
TA EA +G+V+++ P ++L ET++LA RI P + K AVN
Sbjct: 188 TADEAHRLGMVNRVVPRDELEAETLELARRIAAMPPFGLRLTKRAVN 234
>gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional.
Length = 263
Score = 84.0 bits (208), Expect = 2e-20
Identities = 42/112 (37%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Query: 38 GGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTA 97
GG E+ DI AGE AKFG E P G RL R + A ++ LTG TA
Sbjct: 114 GGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTGRHITA 173
Query: 98 QEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVNIDDTEGL 149
EAKE+G++ + P + L++ ++LAE I + PL V + I +TEG+
Sbjct: 174 AEAKEIGLIGHVVPDGQALDKALELAELINANGPLAVQAILRT--IRETEGM 223
>gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex
subunit alpha; Reviewed.
Length = 708
Score = 85.7 bits (213), Expect = 3e-20
Identities = 39/91 (42%), Positives = 57/91 (62%), Gaps = 2/91 (2%)
Query: 36 LGGGCELAMMCD--IIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGN 93
LGGG ELA+ C + K G PE+ +G +PG+GGTQRL R G S A+++ LTG
Sbjct: 113 LGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGK 172
Query: 94 QFTAQEAKEMGVVSKIFPPEKLLEETIKLAE 124
Q A++A ++G+V + P LLE ++LA+
Sbjct: 173 QLRAKQALKLGLVDDVVPHSILLEVAVELAK 203
>gnl|CDD|180958 PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated.
Length = 273
Score = 82.6 bits (205), Expect = 6e-20
Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 1/113 (0%)
Query: 37 GGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFT 96
GGG L ++CD+ A + A FGQ +G+ G G L R G+ A EI Q+
Sbjct: 120 GGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKKAREIWFLCRQYD 179
Query: 97 AQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVNIDDTEGL 149
AQEA +MG+V+ + P L +ET++ + ++SP+ + +K A+N D +G
Sbjct: 180 AQEALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLKAALNA-DCDGQ 231
>gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional.
Length = 257
Score = 82.0 bits (203), Expect = 1e-19
Identities = 43/114 (37%), Positives = 56/114 (49%), Gaps = 3/114 (2%)
Query: 36 LGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQF 95
LG G L CDII A E A FG PEI +G GG + R G S + LTG +
Sbjct: 109 LGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSLTRRMMLTGYRV 165
Query: 96 TAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVNIDDTEGL 149
A E GV+ PPE+L+ E +++A I SPL K+A+N + L
Sbjct: 166 PAAELYRRGVIEACLPPEELMPEAMEIAREIASKSPLATRLAKDALNTIENMSL 219
>gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated.
Length = 266
Score = 80.4 bits (199), Expect = 4e-19
Identities = 36/105 (34%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 39 GCELAMMCDIIYAGEKAKFGQPEIIIG---TMPGAGGTQRLTRAAGKSNAMEICLTGNQF 95
GC+L CD+ A + A+F P + IG + P L+R + AME+ LTG
Sbjct: 119 GCQLVASCDLAVAADTARFAVPGVNIGLFCSTPMVA----LSRNVPRKQAMEMLLTGEFI 174
Query: 96 TAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEA 140
A A+E G+V+++ P + L +LA I SP V KEA
Sbjct: 175 DAATAREWGLVNRVVPADALDAAVARLAAVIAAKSPAAVRIGKEA 219
>gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ.
Members represent alpha subunit of multifunctional
enzyme complex of the fatty acid degradation cycle.
Plays a minor role in aerobic beta-oxidation of fatty
acids. FadJI complex is necessary for anaerobic growth
on short-chain acids with nitrate as an electron
acceptor. Activities include: enoyl-CoA hydratase (EC
4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35),
3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A
representative is E. coli FadJ (aka YfcX). This model
excludes the FadB of TIGR02437 equivalog model [Fatty
acid and phospholipid metabolism, Degradation].
Length = 699
Score = 82.2 bits (203), Expect = 5e-19
Identities = 37/90 (41%), Positives = 57/90 (63%), Gaps = 2/90 (2%)
Query: 36 LGGGCELAMMCD--IIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGN 93
LGGG ELA+ C + +K G PE+ +G +PG+GGTQRL R G S A+++ LTG
Sbjct: 108 LGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGK 167
Query: 94 QFTAQEAKEMGVVSKIFPPEKLLEETIKLA 123
Q A++A ++G+V + P LL+ +++A
Sbjct: 168 QLRAKQALKLGLVDDVVPQSILLDTAVEMA 197
>gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional.
Length = 272
Score = 80.4 bits (199), Expect = 5e-19
Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 9/123 (7%)
Query: 36 LGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQF 95
+GGG +L CD+ YA AKF E+ +G + G QRL R G + E+ LTG
Sbjct: 121 IGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRIIGDGHLRELALTGRDI 180
Query: 96 TAQEAKEMGVVSKIFP-PEKLLEETIKLAERIGEHSPLIVTQVKEAVN------IDDTEG 148
A EA+++G+V++++ + LL A I SPL V KE ++ + D G
Sbjct: 181 DAAEAEKIGLVNRVYDDADALLAAAHATAREIAAKSPLAVRGTKEVLDYMRDHRVAD--G 238
Query: 149 LNH 151
L +
Sbjct: 239 LRY 241
>gnl|CDD|235632 PRK05869, PRK05869, enoyl-CoA hydratase; Validated.
Length = 222
Score = 79.1 bits (195), Expect = 7e-19
Identities = 36/107 (33%), Positives = 55/107 (51%)
Query: 36 LGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQF 95
LG G LA+ D +G+ KFG EI+ G P G RLTRAAG S A E+ +G F
Sbjct: 111 LGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFF 170
Query: 96 TAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVN 142
A+EA +G++ ++ P+ + + A R + P + K ++
Sbjct: 171 DAEEALALGLIDEMVAPDDVYDAAAAWARRFLDGPPHALAAAKAGIS 217
>gnl|CDD|236373 PRK09076, PRK09076, enoyl-CoA hydratase; Provisional.
Length = 258
Score = 79.6 bits (197), Expect = 7e-19
Identities = 36/107 (33%), Positives = 55/107 (51%)
Query: 36 LGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQF 95
+GGG E A+ CDI A E+A+ PE +G +P AGGTQ L G+ A + L G +
Sbjct: 107 MGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMILCGERV 166
Query: 96 TAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVN 142
A A +G+V ++ + E + LA+++ SP V K +
Sbjct: 167 DAATALRIGLVEEVVEKGEAREAALALAQKVANQSPSAVAACKTLIQ 213
>gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional.
Length = 266
Score = 75.9 bits (187), Expect = 2e-17
Identities = 32/87 (36%), Positives = 47/87 (54%)
Query: 37 GGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFT 96
G G A+M D+I A F Q IG +P G T L R GK+ AME+ L G +
Sbjct: 116 GVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGKARAMELSLLGEKLP 175
Query: 97 AQEAKEMGVVSKIFPPEKLLEETIKLA 123
A+ A + G+V+++ +L+ E +KLA
Sbjct: 176 AETALQWGLVNRVVDDAELMAEAMKLA 202
>gnl|CDD|178509 PLN02921, PLN02921, naphthoate synthase.
Length = 327
Score = 74.8 bits (184), Expect = 1e-16
Identities = 37/110 (33%), Positives = 59/110 (53%)
Query: 36 LGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQF 95
+GGG L M+CD+ A + A FGQ +G+ G+ + R G+ A E+ +
Sbjct: 173 VGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQKKAREMWFLARFY 232
Query: 96 TAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVNIDD 145
TA EA +MG+V+ + P ++L ET+K I +SP + +K A+N D
Sbjct: 233 TASEALKMGLVNTVVPLDELEGETVKWCREILRNSPTAIRVLKSALNAAD 282
>gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha
subunit, mitochondrial. Members represent alpha subunit
of mitochondrial multifunctional fatty acid degradation
enzyme complex. Subunit activities include: enoyl-CoA
hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA
dehydrogenase (EC 1.1.1.35). Some characterization in
human , pig , and rat. The beta subunit has activity:
acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Length = 737
Score = 74.9 bits (184), Expect = 2e-16
Identities = 40/101 (39%), Positives = 56/101 (55%), Gaps = 13/101 (12%)
Query: 36 LGGGCELAMMCD--IIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGN 93
LGGG ELA+ C I K G PE+++G +PGAGGTQRL + G A+++ LTG
Sbjct: 120 LGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVPAALDMMLTGK 179
Query: 94 QFTAQEAKEMGVVSKIF--------PPEKLLEETIKLAERI 126
+ A AK+MG+V ++ P E E TI+ E +
Sbjct: 180 KIRADRAKKMGIVDQLVDPLGPGLKPAE---ENTIEYLEEV 217
>gnl|CDD|132254 TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hydrolase. Members
of this protein family are 2-ketocyclohexanecarboxyl-CoA
hydrolase, a ring-opening enzyme that acts in catabolism
of molecules such as benzoyl-CoA and cyclohexane
carboxylate. It converts -ketocyclohexanecarboxyl-CoA to
pimelyl-CoA. It is not sensitive to oxygen.
Length = 256
Score = 73.1 bits (179), Expect = 2e-16
Identities = 41/109 (37%), Positives = 60/109 (55%)
Query: 36 LGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQF 95
+GGG L +CD+ A EKA+FGQ +G++ GT L R G+ A EI ++
Sbjct: 106 IGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAREIWYLCRRY 165
Query: 96 TAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVNID 144
TAQEA MG+V+ + P ++L E K + I E SP + K + N+D
Sbjct: 166 TAQEALAMGLVNAVVPHDQLDAEVQKWCDEIVEKSPTAIAIAKRSFNMD 214
>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB.
Members represent alpha subunit of multifunctional
enzyme complex of the fatty acid degradation cycle.
Activities include: enoyl-CoA hydratase (EC 4.2.1.17),
dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8),
3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35),
3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A
representative is E. coli FadB. This model excludes the
FadJ family represented by SP:P77399 [Fatty acid and
phospholipid metabolism, Degradation].
Length = 714
Score = 74.1 bits (182), Expect = 3e-16
Identities = 35/90 (38%), Positives = 50/90 (55%)
Query: 36 LGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQF 95
LGGGCE + D A + AK G PE +G MPG GGT RL R G NA+E +G +
Sbjct: 114 LGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALEWIASGKEN 173
Query: 96 TAQEAKEMGVVSKIFPPEKLLEETIKLAER 125
A++A ++G V + +KL ++L +
Sbjct: 174 RAEDALKVGAVDAVVTADKLGAAALQLLKD 203
>gnl|CDD|236338 PRK08788, PRK08788, enoyl-CoA hydratase; Validated.
Length = 287
Score = 72.3 bits (178), Expect = 6e-16
Identities = 30/77 (38%), Positives = 39/77 (50%)
Query: 36 LGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQF 95
LGGG E A+ I A AK G PEI+ PG G L R G A E+ L+G +
Sbjct: 133 LGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLARRVGPKLAEELILSGKLY 192
Query: 96 TAQEAKEMGVVSKIFPP 112
TA+E +MG+V +
Sbjct: 193 TAEELHDMGLVDVLVED 209
>gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase.
Length = 265
Score = 70.6 bits (173), Expect = 2e-15
Identities = 34/105 (32%), Positives = 58/105 (55%)
Query: 38 GGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTA 97
G E+A+ CDI+ A AKF G P G +Q+L+R G + A E+ LT TA
Sbjct: 113 AGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRAREVSLTAMPLTA 172
Query: 98 QEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVN 142
+ A+ G+V+ + +LL++ ++AE I +++ +V + K +N
Sbjct: 173 ETAERWGLVNHVVEESELLKKAREVAEAIIKNNQGMVLRYKSVIN 217
>gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 70.7 bits (174), Expect = 2e-15
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
Query: 36 LGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQF 95
GG L CDI A + A F E+ +G +P A + + RA G+ A LT +F
Sbjct: 111 YAGGMGLVAACDIAVAADHAVFCLSEVRLGLIP-ATISPYVIRAMGERAARRYFLTAERF 169
Query: 96 TAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAV 141
A EA +G+V ++ P E L + +L + +SP V K V
Sbjct: 170 DAAEALRLGLVHEVVPAEALDAKVDELLAALVANSPQAVRAGKRLV 215
>gnl|CDD|181174 PRK07938, PRK07938, enoyl-CoA hydratase; Provisional.
Length = 249
Score = 70.0 bits (172), Expect = 2e-15
Identities = 37/116 (31%), Positives = 53/116 (45%), Gaps = 14/116 (12%)
Query: 36 LGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRL-----TRAAGKSNAMEICL 90
LGGG L D+I A + A FG PE+ G + A QRL RA +
Sbjct: 106 LGGGIGLVGNADVIVASDDATFGLPEVDRGALGAATHLQRLVPQHLMRA--------LFF 157
Query: 91 TGNQFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVN-IDD 145
T TA E G V ++ P ++L E +++A +I ++ KEA+N ID
Sbjct: 158 TAATITAAELHHFGSVEEVVPRDQLDEAALEVARKIAAKDTRVIRAAKEALNGIDP 213
>gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA
hydratase paaB. This family of proteins are found
within apparent operons for the degradation of
phenylacetic acid. These proteins contain the enoyl-CoA
hydratase domain as detected by pfam00378. This activity
is consistent with current hypotheses for the
degradation pathway which involve the ligation of
phenylacetate with coenzyme A (paaF), hydroxylation
(paaGHIJK), ring-opening (paaN) and degradation of the
resulting fatty acid-like compound to a Krebs cycle
intermediate (paaABCDE).
Length = 256
Score = 69.9 bits (171), Expect = 3e-15
Identities = 35/114 (30%), Positives = 56/114 (49%)
Query: 37 GGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFT 96
G G LA+ CDI+ A E A+F Q IG +P +GGT L R G++ AM + + G +
Sbjct: 106 GAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAMLGEKLD 165
Query: 97 AQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVNIDDTEGLN 150
A+ A G++ ++ L++E LA + + K A+ T L+
Sbjct: 166 ARTAASWGLIWQVVDDAALMDEAQALAVHLAAQPTRGLALTKRAIQAAATNSLD 219
>gnl|CDD|181386 PRK08321, PRK08321, naphthoate synthase; Validated.
Length = 302
Score = 69.7 bits (171), Expect = 7e-15
Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 37 GGGCELAMMCDIIYAG-EKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQF 95
GGG L ++CD+ A E A+F Q + +G+ G G+ L R G+ A EI G +
Sbjct: 148 GGGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTY 207
Query: 96 TAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVNIDDTEGL 149
+A+EA +MG V+ + P +L E ++ A I SP + +K A N+ D +GL
Sbjct: 208 SAEEAHDMGAVNAVVPHAELETEALEWAREINGKSPTAMRMLKYAFNLTD-DGL 260
>gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 68.9 bits (169), Expect = 8e-15
Identities = 33/106 (31%), Positives = 56/106 (52%)
Query: 37 GGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFT 96
G G LA+ CD++ A AKF + +G P GG+ L RA + A E+ L G +
Sbjct: 111 GAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATELLLEGKPIS 170
Query: 97 AQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVN 142
A+ +GVV+++ P + L E + LA+++ SP + ++K +
Sbjct: 171 AERLHALGVVNRLAEPGQALAEALALADQLAAGSPNALARIKSLIA 216
>gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional.
Length = 272
Score = 69.0 bits (169), Expect = 8e-15
Identities = 33/96 (34%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 37 GGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFT 96
G G A+MCD+ +A + AKF G + G + L R G +NA+++ L+ F
Sbjct: 121 GIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPRLVGHANALDLLLSARTFY 180
Query: 97 AQEAKEMGVVSKIFPPEKLLEETIKLAERIGEH-SP 131
A+EA +G+V+++ PP++L+E T+ AE + + SP
Sbjct: 181 AEEALRLGLVNRVVPPDELMERTLAYAEDLARNVSP 216
>gnl|CDD|236383 PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydratase/lyase;
Validated.
Length = 275
Score = 68.9 bits (169), Expect = 1e-14
Identities = 34/105 (32%), Positives = 59/105 (56%)
Query: 37 GGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFT 96
GGG + CD+ A ++A+FG EI G PG G ++ + G +A+ +TG FT
Sbjct: 117 GGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDALYYIMTGETFT 176
Query: 97 AQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAV 141
++A EMG+V++ P +L T +LA ++ E +P+++ K+
Sbjct: 177 GRKAAEMGLVNESVPLAQLRARTRELAAKLLEKNPVVLRAAKDGF 221
>gnl|CDD|236206 PRK08260, PRK08260, enoyl-CoA hydratase; Provisional.
Length = 296
Score = 67.7 bits (166), Expect = 3e-14
Identities = 35/94 (37%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 42 LAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAK 101
LAM DI A A+FG G +P A + L R G A+E +G F AQEA
Sbjct: 133 LAM--DIRLASTAARFGFVFGRRGIVPEAASSWFLPRLVGLQTALEWVYSGRVFDAQEAL 190
Query: 102 EMGVVSKIFPPEKLLEETIKLAERIGEH-SPLIV 134
+ G+V + PP++LL LA I ++ SP+ V
Sbjct: 191 DGGLVRSVHPPDELLPAARALAREIADNTSPVSV 224
>gnl|CDD|236205 PRK08259, PRK08259, enoyl-CoA hydratase; Provisional.
Length = 254
Score = 66.8 bits (164), Expect = 4e-14
Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 38 GGCELAMMCDIIYAGEKA-------KFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICL 90
GG ELA+ CD+ A E A ++G P I GGT RL R G S AM++ L
Sbjct: 107 GGLELALWCDLRVAEEDAVFGVFCRRWGVPLI-------DGGTVRLPRLIGHSRAMDLIL 159
Query: 91 TGNQFTAQEAKEMGVVSKIFPPEKLLEETIKLAERI 126
TG A EA +G+ +++ P + +LA +
Sbjct: 160 TGRPVDADEALAIGLANRVVPKGQARAAAEELAAEL 195
>gnl|CDD|236908 PRK11423, PRK11423, methylmalonyl-CoA decarboxylase; Provisional.
Length = 261
Score = 67.0 bits (164), Expect = 4e-14
Identities = 32/107 (29%), Positives = 52/107 (48%)
Query: 37 GGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFT 96
GG EL M CD+I A + F +G G T AG E+ T + T
Sbjct: 109 GGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHIVKEMFFTASPIT 168
Query: 97 AQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVNI 143
AQ A +G+++ + E+L + T+++A I E +PL + +KE + +
Sbjct: 169 AQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIAVIKEQLRV 215
>gnl|CDD|168278 PRK05864, PRK05864, enoyl-CoA hydratase; Provisional.
Length = 276
Score = 67.2 bits (164), Expect = 4e-14
Identities = 38/96 (39%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 36 LGGGCELAMMCDIIYAGEKAKFGQPEIIIG-TMPGAGGTQRLTRAAGKSNAMEICLTGNQ 94
+GGG LA+ DI A A F I G T G + L RA G S A EI LTG
Sbjct: 121 IGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIGSSRAFEIMLTGRD 180
Query: 95 FTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHS 130
A+EA+ +G+VS+ P E+LL+ +A R+ S
Sbjct: 181 VDAEEAERIGLVSRQVPDEQLLDTCYAIAARMAGFS 216
>gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional.
Length = 249
Score = 66.3 bits (162), Expect = 7e-14
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 2/105 (1%)
Query: 37 GGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFT 96
G G LA+ D+ AG KA F +G PG G T L RA G A L G +F
Sbjct: 108 GAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARAALLFGMRFD 167
Query: 97 AQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAV 141
A+ A G+ + + + ++LA +V K ++
Sbjct: 168 AEAAVRHGLALMV--ADDPVAAALELAAGPAAAPRELVLATKASM 210
>gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 64.9 bits (159), Expect = 2e-13
Identities = 33/106 (31%), Positives = 58/106 (54%)
Query: 37 GGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFT 96
G G LA+ CDI+ A A F Q + IG +P +GGT L R G + A+ + L G + +
Sbjct: 112 GAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARALGLALLGEKLS 171
Query: 97 AQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVN 142
A++A++ G++ ++ L +E +LA + + +K+A+N
Sbjct: 172 AEQAEQWGLIWRVVDDAALADEAQQLAAHLATQPTRGLALIKQAMN 217
>gnl|CDD|181254 PRK08150, PRK08150, enoyl-CoA hydratase; Provisional.
Length = 255
Score = 64.7 bits (158), Expect = 3e-13
Identities = 34/96 (35%), Positives = 52/96 (54%)
Query: 37 GGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFT 96
GGG ELA I A E F PE G G GG+ R+ R G + ++ LTG +
Sbjct: 105 GGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDMMLTGRVYD 164
Query: 97 AQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPL 132
AQE + +G+ + P + L++ ++LA RI +++PL
Sbjct: 165 AQEGERLGLAQYLVPAGEALDKAMELARRIAQNAPL 200
>gnl|CDD|180423 PRK06143, PRK06143, enoyl-CoA hydratase; Provisional.
Length = 256
Score = 64.3 bits (157), Expect = 4e-13
Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 36 LGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQF 95
LGGG ELA CD+ A A+FG PE+ +G +P L R G + + LTG
Sbjct: 112 LGGGLELAAACDLRIAAHDAQFGMPEVRVG-IPSVIHAALLPRLIGWARTRWLLLTGETI 170
Query: 96 TAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVK 138
A +A G+V ++ P +L +LA + P + Q K
Sbjct: 171 DAAQALAWGLVDRVVPLAELDAAVERLAASLAGCGPQALRQQK 213
>gnl|CDD|180910 PRK07260, PRK07260, enoyl-CoA hydratase; Provisional.
Length = 255
Score = 63.6 bits (155), Expect = 6e-13
Identities = 32/94 (34%), Positives = 48/94 (51%)
Query: 37 GGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFT 96
G +A+ D A K KF Q + +G P AGG LTRA G + A + +TG T
Sbjct: 111 GAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATHLAMTGEALT 170
Query: 97 AQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHS 130
A++A E G V ++ EKL + +L +++ S
Sbjct: 171 AEKALEYGFVYRVAESEKLEKTCEQLLKKLRRGS 204
>gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 63.5 bits (155), Expect = 7e-13
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 5/109 (4%)
Query: 37 GGGCELAMMCDIIYAGEKAKFGQPEII---IGTMPGAGGTQRLTRAAGKSNAMEICLTGN 93
GGG +A CD+ A A+FG P I +G RL G + ++ T
Sbjct: 115 GGGAAIAAACDLRIATPSARFGFP--IARTLGNCLSMSNLARLVALLGAARVKDMLFTAR 172
Query: 94 QFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVN 142
A+EA G+V+++ L LAE + H+PL + KEA+
Sbjct: 173 LLEAEEALAAGLVNEVVEDAALDARADALAELLAAHAPLTLRATKEALR 221
>gnl|CDD|236213 PRK08272, PRK08272, enoyl-CoA hydratase; Provisional.
Length = 302
Score = 58.5 bits (142), Expect = 6e-11
Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Query: 36 LGGGCELAMMCDIIYAGEKAKFGQPEI-IIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQ 94
+ GG ++A+ CD + A + AK G P + G RL G A + TG+
Sbjct: 139 VAGGTDIALHCDQVIAADDAKIGYPPTRVWGVPATGMWAYRL----GPQRAKRLLFTGDC 194
Query: 95 FTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVN 142
T +A E G+ + PPE+L E T +L ERI + VK AVN
Sbjct: 195 ITGAQAAEWGLAVEAVPPEELDERTERLVERIAAVPVNQLAMVKLAVN 242
>gnl|CDD|168351 PRK06023, PRK06023, enoyl-CoA hydratase; Provisional.
Length = 251
Score = 57.5 bits (139), Expect = 1e-10
Identities = 28/96 (29%), Positives = 48/96 (50%)
Query: 36 LGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQF 95
+G G + + CD+ +A ++ F P + + +P AG + R G A + G F
Sbjct: 109 IGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRAFALLALGEGF 168
Query: 96 TAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSP 131
+A+ A+E G++ KI E + ET+K AE + P
Sbjct: 169 SAEAAQEAGLIWKIVDEEAVEAETLKAAEELAAKPP 204
>gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 55.3 bits (134), Expect = 7e-10
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 37 GGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFT 96
GGG ++A+ DI A K E G +P GT L K A E+ T F+
Sbjct: 115 GGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKDVARELTYTARVFS 174
Query: 97 AQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSP 131
A+EA E+G+V+ + + L + LA I + SP
Sbjct: 175 AEEALELGLVTHV--SDDPLAAALALAREIAQRSP 207
>gnl|CDD|180987 PRK07468, PRK07468, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 51.6 bits (124), Expect = 1e-08
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 37 GGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFT 96
GGG L +CD+ A A+FG E +G +P + R G++NA + ++ F
Sbjct: 113 GGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVVAR-MGEANARRVFMSARLFD 171
Query: 97 AQEAKEMGVVSKIFPPEKL 115
A+EA +G++S++ P E+L
Sbjct: 172 AEEAVRLGLLSRVVPAERL 190
>gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional.
Length = 277
Score = 50.7 bits (122), Expect = 3e-08
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 37 GGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGA--GGTQRLTRAAGKSNAMEICLTGNQ 94
G G LAM D+ AK +G + GA G L R G+ A E+ TG
Sbjct: 126 GAGAILAMASDLRLGTPSAKTAFLFTRVG-LAGADMGACALLPRIIGQGRASELLYTGRS 184
Query: 95 FTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGE 128
+A+E + G +++ PE+LL E LA R+
Sbjct: 185 MSAEEGERWGFFNRLVEPEELLAEAQALARRLAA 218
>gnl|CDD|132244 TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-carbonyl-CoA
hydrolase. Members of this protein family are
6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a
ring-hydrolyzing enzyme in the anaerobic metabolism of
aromatic enzymes by way of benzoyl-CoA, as seen in
Thauera aromatica, Geobacter metallireducens, and
Azoarcus sp. Note that Rhodopseudomonas palustris uses a
different pathway to perform a similar degradation of
benzoyl-CoA to 3-hydroxpimelyl-CoA.
Length = 360
Score = 48.0 bits (114), Expect = 3e-07
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 8/100 (8%)
Query: 36 LGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQF 95
+GGG E+ M D A + A FGQ G+ P G T L G AM +
Sbjct: 136 IGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPW 195
Query: 96 TAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVT 135
+A +AK +G++ + P K+ + + +PL+VT
Sbjct: 196 SAHKAKRLGIIMDVVPALKVDGKFVA--------NPLVVT 227
>gnl|CDD|132233 TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecarbonyl-CoA
hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA
hydratase, also called dienoyl-CoA hydratase, acts on
the product of benzoyl-CoA reductase (EC 1.3.99.15).
Benzoyl-CoA is a common intermediate in the degradation
of many aromatic compounds, and this enzyme is part of
an anaerobic pathway for dearomatization and
degradation.
Length = 251
Score = 47.6 bits (113), Expect = 4e-07
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 36 LGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQF 95
LGGG E+A ++++A AK GQPEI++G A L G+ A ++ +G
Sbjct: 101 LGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAPAASCL-LPERMGRVAAEDLLYSGRSI 159
Query: 96 TAQEAKEMGVVSKI 109
E +G+ + +
Sbjct: 160 DGAEGARIGLANAV 173
>gnl|CDD|168377 PRK06072, PRK06072, enoyl-CoA hydratase; Provisional.
Length = 248
Score = 45.2 bits (107), Expect = 2e-06
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Query: 37 GGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFT 96
G +A+ D +A KF +G G L + G EI + G +FT
Sbjct: 102 GACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTG-QRFYEILVLGGEFT 160
Query: 97 AQEAKEMGVVSKIFPPEKLLEETIKLAERI 126
A+EA+ G++ KI E L + ++A RI
Sbjct: 161 AEEAERWGLL-KI--SEDPLSDAEEMANRI 187
>gnl|CDD|236115 PRK07854, PRK07854, enoyl-CoA hydratase; Provisional.
Length = 243
Score = 45.0 bits (107), Expect = 3e-06
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 4/111 (3%)
Query: 36 LGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQF 95
+G G +LAM CD+ +A F P G +RL+ G A + L +
Sbjct: 98 IGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLLGAEKL 157
Query: 96 TAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVNIDDT 146
TA++A G+ ++I L + A I +PL + K +N D
Sbjct: 158 TAEQALATGMANRIGT----LADAQAWAAEIAGLAPLALQHAKRVLNDDGA 204
>gnl|CDD|213787 TIGR03222, benzo_boxC, benzoyl-CoA-dihydrodiol lyase. In the
presence of O2, the benzoyl-CoA oxygenase/reductase
BoxBA BoxAB converts benzoyl-CoA to
2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this
family, BoxC, homologous to enoyl-CoA
hydratases/isomerases, hydrolyze this compound to
3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Length = 546
Score = 44.8 bits (106), Expect = 5e-06
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Query: 37 GGGCELAMMCDIIYAGE--KAKFGQPEI-IIGTMPGAGGTQRLT--RAAGKSNAMEICLT 91
GGG ELA+ CD I + + PE+ ++G +PG GG R+T R + +A C
Sbjct: 132 GGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRRVRRDHADIFCTI 191
Query: 92 GNQFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSP 131
+ AKE +V ++ P + + A + S
Sbjct: 192 EEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELAAQSD 231
>gnl|CDD|236109 PRK07827, PRK07827, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 43.5 bits (103), Expect = 1e-05
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 37 GGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFT 96
GG L CDI+ AG ++ F E IG P L R + ++ A LTG +F
Sbjct: 114 AGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLSPRA-AARYYLTGEKFG 172
Query: 97 AQEAKEMGVVS 107
A EA +G+V+
Sbjct: 173 AAEAARIGLVT 183
>gnl|CDD|235936 PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase;
Validated.
Length = 249
Score = 43.0 bits (102), Expect = 1e-05
Identities = 26/92 (28%), Positives = 43/92 (46%)
Query: 37 GGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFT 96
GGG L + DI+ ++ + + G PG G T L G + E+ LT +
Sbjct: 107 GGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALGQEMLLTARYYR 166
Query: 97 AQEAKEMGVVSKIFPPEKLLEETIKLAERIGE 128
E K+ GV + P ++LE+ ++LA + E
Sbjct: 167 GAELKKRGVPFPVLPRAEVLEKALELARSLAE 198
>gnl|CDD|181274 PRK08184, PRK08184, benzoyl-CoA-dihydrodiol lyase; Provisional.
Length = 550
Score = 42.7 bits (101), Expect = 2e-05
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Query: 37 GGGCELAMMCDIIYAGE--KAKFGQPEI-IIGTMPGAGGTQRLT--RAAGKSNAMEICLT 91
GGG ELA+ CD I + + PE+ ++G +PG GG R+T R + A C
Sbjct: 136 GGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLPGTGGLTRVTDKRKVRRDLADIFCTI 195
Query: 92 GNQFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSP 131
+ A + +V ++ P K + + A + S
Sbjct: 196 EEGVRGKRAVDWRLVDEVVKPSKFDAKVAERAAELAAASD 235
>gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 42.3 bits (100), Expect = 2e-05
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 37 GGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFT 96
G G +A+ D + A AK I IG +P GG L + G++ A +I G + +
Sbjct: 111 GLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQIIWEGKKLS 170
Query: 97 AQEAKEMGVVSKIF 110
A EA ++G++ ++
Sbjct: 171 ATEALDLGLIDEVI 184
>gnl|CDD|215635 PLN03214, PLN03214, probable enoyl-CoA hydratase/isomerase;
Provisional.
Length = 278
Score = 41.4 bits (97), Expect = 5e-05
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 38 GGCELAMMCDIIYAGEKAKFGQPEIIIGT-MPGAGGTQRLTRAAGKSNAMEICLTGNQFT 96
GGC +++ CD + G E+ +G +P + R + A + L G
Sbjct: 121 GGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDRKVAESLLLRGRLVR 180
Query: 97 AQEAKEMGVVSKIFPPEKLLEETIKLAER 125
EAK++G++ ++ P L+E ER
Sbjct: 181 PAEAKQLGLIDEVVPAAALMEAAASAMER 209
>gnl|CDD|183548 PRK12478, PRK12478, enoyl-CoA hydratase; Provisional.
Length = 298
Score = 41.5 bits (97), Expect = 5e-05
Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 18/125 (14%)
Query: 36 LGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGT----QRLTRAAGKSNAMEICLT 91
+GG + A+ DI+ A + A G P M GA T RL+ A K ++ LT
Sbjct: 124 VGGASDYALCADIVIASDDAVIGTP---YSRMWGAYLTGMWLYRLSLAKVKWHS----LT 176
Query: 92 GNQFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIG-------EHSPLIVTQVKEAVNID 144
G T +A E ++++ P E+L ++A + + LIV Q E + +
Sbjct: 177 GRPLTGVQAAEAELINEAVPFERLEARVAEVATELARIPLSQLQAQKLIVNQAYENMGLA 236
Query: 145 DTEGL 149
T+ L
Sbjct: 237 STQTL 241
>gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated.
Length = 265
Score = 41.3 bits (97), Expect = 6e-05
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 37 GGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFT 96
GG L CD+ + A+F E+ IG P A + + +A G+ A LT +F
Sbjct: 114 GGALGLISCCDMAIGADDAQFCLSEVRIGLAP-AVISPFVVKAIGERAARRYALTAERFD 172
Query: 97 AQEAKEMGVVSKIFPPEKL 115
+ A+E+G++++ +P +L
Sbjct: 173 GRRARELGLLAESYPAAEL 191
>gnl|CDD|235991 PRK07327, PRK07327, enoyl-CoA hydratase; Provisional.
Length = 268
Score = 39.6 bits (93), Expect = 2e-04
Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 28/120 (23%)
Query: 37 GGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEIC------- 89
G G A++ DI A + A+ G RL AAG A I
Sbjct: 119 GAGLVAALLADISIAAKDARI------------IDGHTRLGVAAGDHAA--IVWPLLCGM 164
Query: 90 -------LTGNQFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVN 142
L + +EA+ +G+VS ++LL + +++AER+ S + K A+N
Sbjct: 165 AKAKYYLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVAERLAAGSQTAIRWTKYALN 224
>gnl|CDD|235938 PRK07112, PRK07112, polyketide biosynthesis enoyl-CoA hydratase;
Validated.
Length = 255
Score = 39.7 bits (93), Expect = 2e-04
Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 38 GGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTA 97
GG DI+ A E A F E++ G +P A L R G A + L TA
Sbjct: 110 GGIGFVAASDIVIADETAPFSLSELLFGLIP-ACVLPFLIRRIGTQKAHYMTLMTQPVTA 168
Query: 98 QEAKEMGVVSKIFP-PEKLL 116
Q+A G+V + LL
Sbjct: 169 QQAFSWGLVDAYGANSDTLL 188
>gnl|CDD|178568 PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrolase.
Length = 381
Score = 37.4 bits (86), Expect = 0.002
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 2/107 (1%)
Query: 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGN 93
I +GGG +++ A E F PE +G P G + L+R G + LTG
Sbjct: 115 IVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEY-VGLTGA 173
Query: 94 QFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEA 140
+ E G+ + P +L L RIG + P + + +A
Sbjct: 174 RLDGAEMLACGLATHFVPSTRLTALEADLC-RIGSNDPTFASTILDA 219
>gnl|CDD|215151 PLN02267, PLN02267, enoyl-CoA hydratase/isomerase family protein.
Length = 239
Score = 36.6 bits (85), Expect = 0.002
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 87 EICLTGNQFTAQEAKEMGVVSKIFP-PEKLLEETIKLAERI 126
++ L + TA+EA EMG+V E+ +E ++L E +
Sbjct: 159 DVLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEEL 199
>gnl|CDD|177817 PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrolase-like protein.
Length = 401
Score = 34.7 bits (79), Expect = 0.012
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGN 93
+ +GGG +++ A ++ F PE IIG P AG + L+ G+ + LTG
Sbjct: 143 VTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGRLGEY-LGLTGL 201
Query: 94 QFTAQEAKEMGVVSKIFPPEK--LLEETIK 121
+ + E G+ + E+ ++EE +K
Sbjct: 202 KLSGAEMLACGLATHYIRSEEIPVMEEQLK 231
>gnl|CDD|235744 PRK06213, PRK06213, enoyl-CoA hydratase; Provisional.
Length = 229
Score = 33.8 bits (78), Expect = 0.021
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 56 KFGQPEIIIG-TMPGAG---GTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFP 111
K G E+ IG TMP A RLT +A + + F +EA G + ++ P
Sbjct: 124 KIGLNEVAIGMTMPHAAIELARDRLTPSAFQRAV----INAEMFDPEEAVAAGFLDEVVP 179
Query: 112 PEKLLEETIKLAE 124
PE+LL A
Sbjct: 180 PEQLLARAQAAAR 192
>gnl|CDD|177477 PHA02695, PHA02695, hypothetical protein; Provisional.
Length = 725
Score = 33.1 bits (75), Expect = 0.051
Identities = 25/89 (28%), Positives = 32/89 (35%), Gaps = 18/89 (20%)
Query: 64 IGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFP------------ 111
+G AGG +R A S AM + L G + VS P
Sbjct: 9 VGAAVAAGGVERAFAALSTSEAMSLMLDGVHPKHLPRRLYAPVSAEHPTHLHLFRPQHVT 68
Query: 112 PEKLLEETIK------LAERIGEHSPLIV 134
PE LLEE + A I H+P +V
Sbjct: 69 PEDLLEELSRRRCGALFARHIEFHTPYLV 97
>gnl|CDD|235533 PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional.
Length = 342
Score = 32.5 bits (75), Expect = 0.058
Identities = 25/96 (26%), Positives = 34/96 (35%), Gaps = 1/96 (1%)
Query: 53 EKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPP 112
E+ K PE IG P GGT L+RA G + LTG + +A +A G+ P
Sbjct: 129 ERTKMAMPETGIGFFPDVGGTYFLSRAPGAL-GTYLALTGARISAADALYAGLADHFVPS 187
Query: 113 EKLLEETIKLAERIGEHSPLIVTQVKEAVNIDDTEG 148
L L + +V A
Sbjct: 188 ADLPALLDALISLRWDSGADVVDAALAAFATPAPAS 223
>gnl|CDD|178462 PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrolase-like protein.
Length = 379
Score = 30.5 bits (69), Expect = 0.28
Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 7/112 (6%)
Query: 32 IW--IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEIC 89
+ + +GGG L + EK F PE +G G + L+R G +
Sbjct: 111 LVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGHLGEY-LA 169
Query: 90 LTGNQFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAV 141
LTG + +E G+ + P EKL E L +R+ + + V+EA+
Sbjct: 170 LTGARLNGKEMVACGLATHFVPSEKLPE----LEKRLLNLNSGDESAVQEAI 217
>gnl|CDD|178443 PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrolase-like protein.
Length = 407
Score = 29.2 bits (65), Expect = 0.76
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 37 GGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFT 96
G G + M + +K F PE+ +G P AG + L+R G + LTG +
Sbjct: 153 GAGISIPGMFRV--VTDKTVFAHPEVQMGFHPDAGASYYLSRLPGYLGEY-LALTGQKLN 209
Query: 97 AQEAKEMGVVS 107
E G+ +
Sbjct: 210 GVEMIACGLAT 220
>gnl|CDD|234307 TIGR03676, aRF1/eRF1, peptide chain release factor 1, archaeal and
eukaryotic forms. Directs the termination of nascent
peptide synthesis (translation) in response to the
termination codons UAA, UAG and UGA. This model
identifies both archaeal (aRF1) and eukaryotic (eRF1) of
the protein. Also known as translation termination
factor 1 [Protein synthesis, Translation factors].
Length = 357
Score = 29.1 bits (66), Expect = 0.86
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 99 EAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEA 140
+A EMG V + E ++EE +LAE G +I T +E
Sbjct: 298 KALEMGAVDTLLISEDIIEELSELAEESGAKVEIISTDTEEG 339
>gnl|CDD|106966 PHA00657, PHA00657, crystallin beta/gamma motif-containing protein.
Length = 2052
Score = 27.8 bits (61), Expect = 2.7
Identities = 27/112 (24%), Positives = 41/112 (36%), Gaps = 32/112 (28%)
Query: 61 EIIIGTMPGAGGT---------------QRLTRAAGKSNAMEICLTGNQFTAQE------ 99
+ +I T+ G GG QR RA E+ NQ A +
Sbjct: 356 QTLIATLVGVGGNVAVMRGIDRTITTADQRTQRAQAAQQQAELLARLNQLAAADKVLARD 415
Query: 100 ----------AKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAV 141
A E G V ++F L ++ LAE++ SP + Q+ EA+
Sbjct: 416 PDTFEQFVANAAENGPVQQVFIDANTLMQS-GLAEQVAAVSPAVAAQLPEAL 466
>gnl|CDD|223895 COG0825, AccA, Acetyl-CoA carboxylase alpha subunit [Lipid
metabolism].
Length = 317
Score = 27.6 bits (62), Expect = 3.0
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 12/78 (15%)
Query: 77 TRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFP-PEKLLEETIK-LAERIGEHSPLIV 134
++A + AM+I TA + KE+G++ I P P + AE + ++
Sbjct: 238 SKAKEAAEAMKI-------TAHDLKELGIIDGIIPEPLGGAHRDPEAAAEALKN---ALL 287
Query: 135 TQVKEAVNIDDTEGLNHR 152
++ E + + E L R
Sbjct: 288 KELHELDKLPEEELLARR 305
>gnl|CDD|215245 PLN02446, PLN02446,
(5-phosphoribosyl)-5-[(5-
phosphoribosylamino)methylideneamino]
imidazole-4-carboxamide isomerase.
Length = 262
Score = 27.4 bits (61), Expect = 3.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 121 KLAERIGEHSPLIVTQVKEAVNIDDTE 147
+L +GEHSP+ VT ++DD E
Sbjct: 197 ELVALLGEHSPIPVTYAGGVRSLDDLE 223
>gnl|CDD|221584 pfam12455, Dynactin, Dynein associated protein. This domain family
is found in eukaryotes, and is approximately 280 amino
acids in length. The family is found in association with
pfam01302. There is a single completely conserved
residue E that may be functionally important. Dynactin
has been associated with Dynein, a kinesin protein which
is involved in organelle transport, mitotic spindle
assembly and chromosome segregation. Dynactin anchors
Dynein to specific subcellular structures.
Length = 274
Score = 27.3 bits (61), Expect = 3.5
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 79 AAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPEKLLEE------TIKLAERIGEHSPL 132
+A K+ A I L + A++A E + K F PE L + L +R+ + L
Sbjct: 36 SASKAQAKTIDLELRRLEAEQAAEHLAILKAFLPEAFLRGDNDSVLALLLFKRVAAKASL 95
Query: 133 IVTQVKEAVNIDDT 146
+ QV+E + +D+
Sbjct: 96 LANQVRERFDREDS 109
>gnl|CDD|227328 COG4995, COG4995, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 420
Score = 27.0 bits (60), Expect = 4.5
Identities = 24/80 (30%), Positives = 28/80 (35%), Gaps = 21/80 (26%)
Query: 50 YAGEKAKFGQPEIIIGTMPG----AGGTQRLTR----AAGKSNAMEICLTG---NQFTAQ 98
Y EK I T PG R AAG S TG F A
Sbjct: 187 YLIEK-------YAIATSPGLQLTDSKPLRQQNLKVLAAGLSEPSGPARTGFDALPFAAL 239
Query: 99 EAKEMGVVSKIFPPEKLLEE 118
E + ++ IFPP+KLL
Sbjct: 240 EVE---TIAAIFPPQKLLLN 256
>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23. All proteins
in this family for which functions are known are
components of a multiprotein complex used for targeting
nucleotide excision repair to specific parts of the
genome. In humans, Rad23 complexes with the XPC protein.
This family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 378
Score = 26.8 bits (59), Expect = 5.0
Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 9/96 (9%)
Query: 58 GQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSK---IFPP-- 112
Q + G Q T AA N +E QF Q+ +++ V + + PP
Sbjct: 220 PQHGSVFEQAAQGGTEQPATEAAQGGNPLEFLRNQPQF--QQLRQV--VQQNPQLLPPLL 275
Query: 113 EKLLEETIKLAERIGEHSPLIVTQVKEAVNIDDTEG 148
+++ +E +L ++I +H + + E V +E
Sbjct: 276 QQIGQENPQLLQQISQHPEQFLQMLNEPVGELASES 311
>gnl|CDD|182577 PRK10595, PRK10595, SOS cell division inhibitor; Provisional.
Length = 164
Score = 26.5 bits (59), Expect = 5.5
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 46 CDIIYAGEKA-KFGQPEIIIGTMPG---AGGTQRLTRAAGKSNAM 86
C + A E+A + G +++G +P RL AA + NAM
Sbjct: 92 CHTVEAMERALRTGNYSVVLGWLPDELTEEEHARLVDAAQEGNAM 136
>gnl|CDD|237133 PRK12553, PRK12553, ATP-dependent Clp protease proteolytic subunit;
Reviewed.
Length = 207
Score = 26.5 bits (59), Expect = 6.0
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 95 FTAQEAKEMGVVSKIFPPEKLLE 117
TA+EAK+ G+V +I + L+
Sbjct: 185 LTAEEAKDYGLVDQIITSYRDLK 207
>gnl|CDD|198186 cd09932, SH2_C-SH2_PLC_gamma_like, C-terminal Src homology 2
(C-SH2) domain in Phospholipase C gamma. Phospholipase
C gamma is a signaling molecule that is recruited to
the C-terminal tail of the receptor upon
autophosphorylation of a highly conserved tyrosine.
PLCgamma is composed of a Pleckstrin homology (PH)
domain followed by an elongation factor (EF) domain, 2
catalytic regions of PLC domains that flank 2 tandem
SH2 domains (N-SH2, C-SH2), and ending with a SH3
domain and C2 domain. N-SH2 SH2 domain-mediated
interactions represent a crucial step in transmembrane
signaling by receptor tyrosine kinases. SH2 domains
recognize phosphotyrosine (pY) in the context of
particular sequence motifs in receptor phosphorylation
sites. Both N-SH2 and C-SH2 have a very similar binding
affinity to pY. But in growth factor stimulated cells
these domains bind to different target proteins. N-SH2
binds to pY containing sites in the C-terminal tails of
tyrosine kinases and other receptors. Recently it has
been shown that this interaction is mediated by
phosphorylation-independent interactions between a
secondary binding site found exclusively on the N-SH2
domain and a region of the FGFR1 tyrosine kinase
domain. This secondary site on the SH2 cooperates with
the canonical pY site to regulate selectivity in
mediating a specific cellular process. C-SH2 binds to
an intramolecular site on PLCgamma itself which allows
it to hydrolyze phosphatidylinositol-4,5-bisphosphate
into diacylglycerol and inositol triphosphate. These
then activate protein kinase C and release calcium. In
general SH2 domains are involved in signal
transduction. They typically bind pTyr-containing
ligands via two surface pockets, a pTyr and hydrophobic
binding pocket, allowing proteins with SH2 domains to
localize to tyrosine phosphorylated sites.
Length = 104
Score = 25.7 bits (57), Expect = 6.8
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 4 FEKLFILID-YEQKDLYRSKNLKF 26
FE L L+ YE+ LYR L++
Sbjct: 70 FESLVELVSYYEKHPLYRKIKLRY 93
>gnl|CDD|240351 PTZ00298, PTZ00298, mevalonate kinase; Provisional.
Length = 328
Score = 26.4 bits (58), Expect = 7.5
Identities = 26/104 (25%), Positives = 34/104 (32%), Gaps = 14/104 (13%)
Query: 50 YAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLT--------GNQFTAQEAK 101
+ GE G P T GG R GKS I TA K
Sbjct: 141 FVGEGGYHGTPSGADNTAATYGGLISYRRVNGKSVFKRIAFQQPLYLVVCSTGITASTTK 200
Query: 102 EMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVNIDD 145
VV + KL E R+ E+ V++ KEA+ +
Sbjct: 201 ---VVGDV---RKLKENQPTWFNRLLENYNACVSEAKEALQKGN 238
>gnl|CDD|212523 cd09999, Arginase-like_1, Arginase-like amidino hydrolase family.
This family includes arginase, also known as
arginase-like amidino hydrolase family, as well as
arginase-like proteins and are found in bacteria,
archaea and eykaryotes, but does not include metazoan
arginases. Arginase is a binuclear Mn-dependent
metalloenzyme and catalyzes hydrolysis of L-arginine to
L-ornithine and urea (Arg, EC 3.5.3.1), the reaction
being the fifth and final step in the urea cycle,
providing the path for the disposal of nitrogenous
compounds. Arginase controls cellular levels of arginine
and ornithine which are involved in protein
biosynthesis, and in production of creatine, polyamines,
proline and nitric acid.
Length = 272
Score = 26.1 bits (58), Expect = 8.7
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 8/72 (11%)
Query: 65 GTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPEKLLEETIKLAE 124
G + GA + L +S + + A E G++ + LL + A+
Sbjct: 17 GYVLGA---ELLAWLLPESADETVEVPVPPDPAPLDPETGIIGR----SALLAQLRAAAD 69
Query: 125 RIGEHSPL-IVT 135
I P V
Sbjct: 70 IIEAALPDRPVV 81
>gnl|CDD|236798 PRK10929, PRK10929, putative mechanosensitive channel protein;
Provisional.
Length = 1109
Score = 26.2 bits (58), Expect = 8.8
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 113 EKLLEETIKLAERIGEHSPLIVTQVKEAVNIDDTEGLNH 151
E+ LE T LAE+ G+ IV Q K +N + ++ LN
Sbjct: 240 ERALESTELLAEQSGDLPKSIVAQFK--INRELSQALNQ 276
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.139 0.409
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,821,060
Number of extensions: 708418
Number of successful extensions: 830
Number of sequences better than 10.0: 1
Number of HSP's gapped: 793
Number of HSP's successfully gapped: 112
Length of query: 152
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 64
Effective length of database: 7,034,450
Effective search space: 450204800
Effective search space used: 450204800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.9 bits)