RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9281
(152 letters)
>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 260
Score = 100 bits (249), Expect = 3e-27
Identities = 75/107 (70%), Positives = 92/107 (85%)
Query: 36 LGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQF 95
LGGGCELAMMCDIIYAGEKA+FGQPEI++GT+PGAGGTQRLTRA GKS AME+ LTG++
Sbjct: 109 LGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRI 168
Query: 96 TAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVN 142
+AQ+AK+ G+VSKIFP E L+EE I+ AE+I +S +IV KE+VN
Sbjct: 169 SAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVAMAKESVN 215
>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus
erythropolis [TaxId: 1833]}
Length = 249
Score = 52.0 bits (123), Expect = 2e-09
Identities = 31/143 (21%), Positives = 56/143 (39%), Gaps = 1/143 (0%)
Query: 1 MFHFEKLFILIDYEQKDLYRSKNLKFIQCLKIWIYLGGGCELAMMCDIIYAGEKAKF-GQ 59
+ +I Q+ L +++ + + E+ +M DI+ A E A F
Sbjct: 81 LGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVTNAPEIPVMSDIVLAAESATFQDG 140
Query: 60 PEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPEKLLEET 119
P G +PG G G + LTG + A+ A + G V+++ ++LL
Sbjct: 141 PHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNEVLSEQELLPRA 200
Query: 120 IKLAERIGEHSPLIVTQVKEAVN 142
+LA I E L ++ +
Sbjct: 201 WELARGIAEKPLLARRYARKVLT 223
>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 52.1 bits (123), Expect = 3e-09
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Query: 39 GCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQ 98
G ELA+ CDI A AK G E + +PG GGTQRL RA G S A E+ + +
Sbjct: 114 GLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGK 173
Query: 99 EAKEMGVVSKIFPPEKLLEETIKLA----ERIGEHSPLIVTQVKEAVN 142
EAK +G++S + + + + A P+ + K A+N
Sbjct: 174 EAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMRVAKLAIN 221
>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA
isomerase {Human (Homo sapiens) [TaxId: 9606]}
Length = 245
Score = 51.7 bits (122), Expect = 3e-09
Identities = 26/111 (23%), Positives = 48/111 (43%)
Query: 40 CELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQE 99
L + D +YA ++A F P +G P + + + A E+ + G + TA E
Sbjct: 114 VTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGE 173
Query: 100 AKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVNIDDTEGLN 150
A G+V+++FP +E + + P + KE + + E L+
Sbjct: 174 ACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALRISKEVIRKREREKLH 224
>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus
thermophilus [TaxId: 274]}
Length = 253
Score = 50.9 bits (120), Expect = 5e-09
Identities = 41/114 (35%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 36 LGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQF 95
+ GG LA+ CD++ E+A+ G E+ IG + + L RA G+ A ++ LTG
Sbjct: 106 VAGGAGLALACDLVVMDEEARLGYTEVKIGFVAA-LVSVILVRAVGEKAAKDLLLTGRLV 164
Query: 96 TAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVNIDDTEGL 149
A+EAK +G+V++I PP K LEE LAE + +++P + KE + GL
Sbjct: 165 EAREAKALGLVNRIAPPGKALEEAKALAEEVAKNAPTSLRLTKELLLALPGMGL 218
>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase
(delta3-delta2-enoyl-CoA isomerase) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 266
Score = 47.4 bits (111), Expect = 1e-07
Identities = 12/72 (16%), Positives = 22/72 (30%), Gaps = 6/72 (8%)
Query: 86 MEICLTGNQFTAQEAKEMGVVSKIFPPEKLLEETI------KLAERIGEHSPLIVTQVKE 139
E + F E G +SK F E +L E++ +K+
Sbjct: 171 YECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGMKK 230
Query: 140 AVNIDDTEGLNH 151
+ + + N
Sbjct: 231 LLKSNHIDAFNK 242
>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit,
N-terminal domain {Pseudomonas fragi [TaxId: 296]}
Length = 310
Score = 45.1 bits (105), Expect = 7e-07
Identities = 30/89 (33%), Positives = 46/89 (51%)
Query: 38 GGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTA 97
GG E+ + D + AK G PE+ +G PG GGT RL R G NA+E +G + A
Sbjct: 117 GGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRA 176
Query: 98 QEAKEMGVVSKIFPPEKLLEETIKLAERI 126
++A ++ V + +KL + L +R
Sbjct: 177 EDALKVSAVDAVVTADKLGAAALDLIKRA 205
>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB
{Pectobacterium carotovorum [TaxId: 554]}
Length = 230
Score = 43.3 bits (100), Expect = 3e-06
Identities = 12/57 (21%), Positives = 20/57 (35%)
Query: 86 MEICLTGNQFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVN 142
EI A + +V+++ LL+ I A + + K AVN
Sbjct: 155 QEIIYQCQSLDAPRCVDYRLVNQVVESSALLDAAITQAHVMASYPASAFINTKRAVN 211
>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase
(delta3-delta2-enoyl-CoA isomerase) {Human (Homo
sapiens), mitochondrial [TaxId: 9606]}
Length = 249
Score = 35.6 bits (80), Expect = 0.001
Identities = 10/64 (15%), Positives = 20/64 (31%)
Query: 86 MEICLTGNQFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVNIDD 145
G F EA ++G+V ++ P E++ + + K +
Sbjct: 160 ERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWMAIPDHARQLTKAMMRKAT 219
Query: 146 TEGL 149
L
Sbjct: 220 ASRL 223
>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia
coli [TaxId: 562]}
Length = 261
Score = 34.0 bits (76), Expect = 0.005
Identities = 31/105 (29%), Positives = 52/105 (49%)
Query: 38 GGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTA 97
G E+ M D+I A + F + +G G LTR AG E+ T + TA
Sbjct: 110 GAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITA 169
Query: 98 QEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVN 142
Q A +G+++ + E+L + T+++A I E +PL + +KE +
Sbjct: 170 QRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIAVIKEELR 214
>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase
(delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 275
Score = 32.8 bits (73), Expect = 0.010
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 36 LGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAME-ICLTGNQ 94
+GGG +L CDI Y + A F E+ +G G QRL + G + + + T +
Sbjct: 119 IGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARK 178
Query: 95 FTAQEAKEMGVVSKIFP-PEKLLEETIKLAERIGEHSPLIVTQVKEAVN 142
A EA + G+VS++FP + +L LA I SP+ V K +
Sbjct: 179 MMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKSPVAVQGSKINLI 227
>d1jbea_ c.23.1.1 (A:) CheY protein {Escherichia coli [TaxId: 562]}
Length = 128
Score = 28.0 bits (62), Expect = 0.28
Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 10/100 (10%)
Query: 38 GGCELAMMCDIIYAGEKAKFGQPEIII-----GTMPGAGGTQRLTRAAGKSNAMEICLTG 92
G + D + A K + G +I M G + + S + +T
Sbjct: 28 GFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTA 87
Query: 93 N--QFTAQEAKEMGV---VSKIFPPEKLLEETIKLAERIG 127
+ A + G V K F L E+ K+ E++G
Sbjct: 88 EAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKLG 127
>d1bh9b_ a.22.1.3 (B:) TAF(II)28 {Human (Homo sapiens) [TaxId:
9606]}
Length = 89
Score = 25.8 bits (57), Expect = 1.1
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 82 KSNAMEIC--LTGNQFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKE 139
K+ + +TG + M +SK+F E ++EE + + E+ GE PL ++E
Sbjct: 19 KAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGE-VVEEALDVCEKWGEMPPLQPKHMRE 77
Query: 140 AVNIDDTEGL 149
AV ++G
Sbjct: 78 AVRRLKSKGQ 87
>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo
sapiens), mitochondrial [TaxId: 9606]}
Length = 193
Score = 24.5 bits (53), Expect = 4.9
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 95 FTAQEAKEMGVVSKI 109
+ EA+E G++ K+
Sbjct: 174 MSPMEAQEFGILDKV 188
>d2hk6a1 c.92.1.1 (A:2-310) Ferrochelatase {Bacillus subtilis
[TaxId: 1423]}
Length = 309
Score = 24.7 bits (53), Expect = 5.0
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 111 PPEKLLEETIKLAERIGEHSPLIV 134
P ++L++ E IG SPL
Sbjct: 34 PEPEMLQDLKDRYEAIGGISPLAQ 57
>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium
falciparum [TaxId: 5833]}
Length = 190
Score = 24.7 bits (53), Expect = 5.1
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 95 FTAQEAKEMGVVSKI 109
A EAK+ G++ ++
Sbjct: 165 MNALEAKQYGIIDEV 179
>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia
coli [TaxId: 562]}
Length = 183
Score = 24.5 bits (53), Expect = 5.2
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 95 FTAQEAKEMGVVSKI 109
+A EA E G+V I
Sbjct: 164 LSAPEAVEYGLVDSI 178
>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 179
Score = 24.6 bits (53), Expect = 5.3
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 95 FTAQEAKEMGVVSKI 109
FTA EA E G V I
Sbjct: 161 FTAAEALEYGFVDHI 175
>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 192
Score = 24.2 bits (52), Expect = 6.4
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 95 FTAQEAKEMGVVSKI 109
+AQE E G + +I
Sbjct: 174 MSAQETLEYGFIDEI 188
>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 404
Score = 24.1 bits (52), Expect = 8.0
Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 4/58 (6%)
Query: 96 TAQEAKEMGVVSKIFPPEKLLEETIK-LAERIGEHSPLIVTQVKEAV-NIDDTEGLNH 151
+ GV+SK + L R+ E ++ ++ V E +
Sbjct: 285 RSSRMVAKGVISKELEWTEARRFFFWRLRRRLNEEY--LIKRLSHQVGEASRLEKIAR 340
Score = 24.1 bits (52), Expect = 9.7
Identities = 19/109 (17%), Positives = 36/109 (33%), Gaps = 8/109 (7%)
Query: 37 GGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFT 96
G ++ I A + + G + G R + M
Sbjct: 181 LRGGSWVVVDPTINADQMEMYADVNARAGVLEPQGMVGIKFRREKLLDTMNRL----DDK 236
Query: 97 AQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVNIDD 145
+E + + +K PE + + +LA+R E P I Q+ ++ D
Sbjct: 237 YRELRSQ-LSNKSLAPEVHQQISKQLADRERELLP-IYGQI--SLQFAD 281
>d1cuka1 a.5.1.1 (A:156-203) DNA helicase RuvA subunit, C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 48
Score = 22.3 bits (48), Expect = 9.0
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 95 FTAQEAKEMGVVSKIFPPEKLLEETIKLA 123
+ QEA +VSKI P+ E I+ A
Sbjct: 17 YKPQEASR--MVSKIARPDASSETLIREA 43
>d1vkea_ a.152.1.2 (A:) Hypothetical protein TM1620 {Thermotoga
maritima [TaxId: 2336]}
Length = 118
Score = 23.4 bits (50), Expect = 9.8
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 113 EKLLEETIKLAERIGEHSPLIV 134
+K +E +L E++ L
Sbjct: 1 KKFVEARRELNEKVLSRGTLNT 22
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.139 0.409
Gapped
Lambda K H
0.267 0.0516 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 576,328
Number of extensions: 26050
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 26
Length of query: 152
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 74
Effective length of database: 1,336,656
Effective search space: 98912544
Effective search space used: 98912544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.2 bits)