BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9282
(120 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GUZ|B Chain B, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
pdb|2GUZ|D Chain D, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
pdb|2GUZ|F Chain F, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
pdb|2GUZ|H Chain H, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
pdb|2GUZ|J Chain J, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
pdb|2GUZ|L Chain L, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
pdb|2GUZ|N Chain N, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
pdb|2GUZ|P Chain P, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
Length = 65
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 41/60 (68%), Gaps = 4/60 (6%)
Query: 56 MTLDEARDILDIKQ----LDPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEV 111
MTLDE+ IL+I++ L+ +I R+ +LF ND KGGSFY+QSKV RA ER+ E+
Sbjct: 1 MTLDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKWEL 60
>pdb|2GUZ|A Chain A, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
pdb|2GUZ|C Chain C, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
pdb|2GUZ|E Chain E, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
pdb|2GUZ|G Chain G, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
pdb|2GUZ|I Chain I, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
pdb|2GUZ|K Chain K, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
pdb|2GUZ|M Chain M, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
pdb|2GUZ|O Chain O, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
Length = 71
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 56 MTLDEARDILDIKQ--LDPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQ 109
M EA IL++ + L K++K+ + + AN KGGS ++ +K+ AK+ +++
Sbjct: 11 MNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLEK 66
>pdb|1PIV|2 Chain 2, Binding Of The Antiviral Drug Win51711 To The Sabin Strain
Of Type 3 Poliovirus: Structural Comparison With Drug
Binding In Rhinovirus 14
pdb|1PVC|2 Chain 2, Refinement Of The Sabin Strain Of Type 3 Poliovirus At 2.4
Angstroms And The Crystal Structures Of Its Variants At
2.9 Angstroms Resolution
pdb|1VBE|2 Chain 2, Poliovirus (Type 3, Sabin Strain, Mutant 242-H2) Complexed
With R78206
pdb|1VBC|2 Chain 2, Poliovirus (Type 3, Sabin Strain) (P3SABIN, P3LEON12A(1)
B) Complexed With R77975
pdb|1VBB|2 Chain 2, Poliovirus (type 3, Sabin Strain) (p3/sabin,
P3/leon/12a(1) B) Complexed With R80633
pdb|1VBA|2 Chain 2, Poliovirus (type 3, Sabin Strain) (p3/sabin,
P3/leon/12a(1) B) Complexed With R78206
Length = 271
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 76 KQRYEFLFNANDSSKGGSFYIQ 97
KQRY NAN +GG FY Q
Sbjct: 138 KQRYTSYANANPGERGGKFYSQ 159
>pdb|3EPD|2 Chain 2, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus Type 3
Length = 266
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 76 KQRYEFLFNANDSSKGGSFYIQ 97
KQRY NAN +GG FY Q
Sbjct: 133 KQRYTSYANANPGERGGKFYSQ 154
>pdb|1Q7G|A Chain A, Homoserine Dehydrogenase In Complex With Suicide
Inhibitor Complex Nad-5-Hydroxy-4-Oxonorvaline
pdb|1Q7G|B Chain B, Homoserine Dehydrogenase In Complex With Suicide
Inhibitor Complex Nad-5-Hydroxy-4-Oxonorvaline
Length = 359
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 1 MAKYIIQIAVLGAQVVGRAF 20
M+ ++ +AV+GA VVG AF
Sbjct: 1 MSTKVVNVAVIGAGVVGSAF 20
>pdb|1D3U|B Chain B, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BBRE+TATA-
Box Complex From Pyrococcus Woesei
Length = 201
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 52 LRTGMTLDEARDILDIKQLDPKEIKQRYEFLF-NANDSSK 90
L+ TLDE I DI ++D KEI + Y F+ N N + K
Sbjct: 67 LKVPRTLDE---IADIARVDKKEIGRSYRFIARNLNLTPK 103
>pdb|1AIS|B Chain B, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BTATA-Box
Complex From Pyrococcus Woesei
Length = 200
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 52 LRTGMTLDEARDILDIKQLDPKEIKQRYEFLF-NANDSSK 90
L+ TLDE I DI ++D KEI + Y F+ N N + K
Sbjct: 66 LKVPRTLDE---IADIARVDKKEIGRSYRFIARNLNLTPK 102
>pdb|4EM6|D Chain D, The Structure Of Glucose-6-Phosphate Isomerase (Gpi) From
Brucella Melitensis
pdb|4EM6|A Chain A, The Structure Of Glucose-6-Phosphate Isomerase (Gpi) From
Brucella Melitensis
pdb|4EM6|B Chain B, The Structure Of Glucose-6-Phosphate Isomerase (Gpi) From
Brucella Melitensis
pdb|4EM6|C Chain C, The Structure Of Glucose-6-Phosphate Isomerase (Gpi) From
Brucella Melitensis
Length = 553
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 49 SENLRTGMTLDEARDILDIKQLDPKEIKQ 77
SE L G TLDEAR L K L ++++
Sbjct: 431 SEALMKGRTLDEARAQLQAKNLPASQVER 459
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.341
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,576,135
Number of Sequences: 62578
Number of extensions: 74796
Number of successful extensions: 219
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 213
Number of HSP's gapped (non-prelim): 13
length of query: 120
length of database: 14,973,337
effective HSP length: 82
effective length of query: 38
effective length of database: 9,841,941
effective search space: 373993758
effective search space used: 373993758
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)