BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9282
(120 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VF08|TIM16_DROME Mitochondrial import inner membrane translocase subunit Tim16
OS=Drosophila melanogaster GN=blp PE=2 SV=1
Length = 141
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/115 (69%), Positives = 89/115 (77%), Gaps = 5/115 (4%)
Query: 1 MAKYIIQIAVLGAQVVGRAFAKALRQEYAASQEAAKRAGGGRQGTAQASENLRTGMTLDE 60
MAKYI QI VLGAQ VGRAF KALRQE AASQEAA+RAGGG+QG A NLRTGMTL+E
Sbjct: 1 MAKYIAQIIVLGAQAVGRAFTKALRQEIAASQEAARRAGGGKQGDKSAESNLRTGMTLEE 60
Query: 61 ARDILDIKQLDPKE---IKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEVK 112
A+ IL+I DPK I + YE LF N+ SKGGSFYIQSKV RAKER+D E+K
Sbjct: 61 AKQILNID--DPKNVDAITKNYEHLFQVNERSKGGSFYIQSKVFRAKERLDHEIK 113
>sp|Q6NTU3|TI16A_XENLA Mitochondrial import inner membrane translocase subunit tim16-A
OS=Xenopus laevis GN=pam16-a PE=2 SV=1
Length = 125
Score = 129 bits (323), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 64/112 (57%), Positives = 86/112 (76%), Gaps = 2/112 (1%)
Query: 1 MAKYIIQIAVLGAQVVGRAFAKALRQEYAASQEAAKRAGGGRQGTAQASENLRTGMTLDE 60
MAKY+ QI V+G QVVGRAF +ALRQE+AAS+ AA+ GR GT A+ + +G++L E
Sbjct: 1 MAKYLAQIVVMGMQVVGRAFTRALRQEFAASKVAAE--ARGRAGTESAAVSSLSGISLQE 58
Query: 61 ARDILDIKQLDPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEVK 112
A+ IL++ +L P+EI++ YE LF ND GGSFY+QSKVVRAKER+DQE++
Sbjct: 59 AQQILNVSKLTPEEIQKNYEHLFKVNDKGLGGSFYLQSKVVRAKERLDQEME 110
>sp|Q5M995|TI16B_XENLA Mitochondrial import inner membrane translocase subunit tim16-B
OS=Xenopus laevis GN=pam16-b PE=2 SV=1
Length = 122
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/112 (55%), Positives = 86/112 (76%), Gaps = 2/112 (1%)
Query: 1 MAKYIIQIAVLGAQVVGRAFAKALRQEYAASQEAAKRAGGGRQGTAQASENLRTGMTLDE 60
MAKY+ QI ++G QVVGRAF +ALRQE+AAS+ AA+ GR GT A+ + +G++ E
Sbjct: 1 MAKYLAQIVLMGVQVVGRAFTRALRQEFAASKTAAE--ARGRAGTESAAVSSLSGISFQE 58
Query: 61 ARDILDIKQLDPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEVK 112
A+ IL++ +L P+EI++ YE LF ND + GGSFY+QSKVVRAKER+DQE++
Sbjct: 59 AQQILNVSKLTPEEIQKNYEHLFKVNDKAVGGSFYLQSKVVRAKERLDQEME 110
>sp|Q6PBL0|TIM16_DANRE Mitochondrial import inner membrane translocase subunit tim16
OS=Danio rerio GN=pam16 PE=2 SV=1
Length = 129
Score = 119 bits (298), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 72/112 (64%), Positives = 87/112 (77%), Gaps = 4/112 (3%)
Query: 1 MAKYIIQIAVLGAQVVGRAFAKALRQEYAASQEAAK-RAGGGRQGTAQASENLRTGMTLD 59
MAKY+ QI V+GAQVVGRAFA+ALRQE+AASQ AA+ R GRQ A +S TGMTL
Sbjct: 1 MAKYLAQIIVMGAQVVGRAFARALRQEFAASQAAAEARGQAGRQSAAASS---FTGMTLQ 57
Query: 60 EARDILDIKQLDPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEV 111
EA+ IL+I L P+EI++ YE LF ND + GGSFYIQSKVVRAKER+D+E+
Sbjct: 58 EAQQILNISTLTPEEIQKNYEHLFKVNDKAVGGSFYIQSKVVRAKERLDEEL 109
>sp|Q9Y3D7|TIM16_HUMAN Mitochondrial import inner membrane translocase subunit TIM16
OS=Homo sapiens GN=PAM16 PE=1 SV=2
Length = 125
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/112 (58%), Positives = 87/112 (77%), Gaps = 2/112 (1%)
Query: 1 MAKYIIQIAVLGAQVVGRAFAKALRQEYAASQEAAKRAGGGRQGTAQASENLRTGMTLDE 60
MAKY+ QI V+G QVVGRAFA+ALRQE+AAS+ AA G +A AS NL +G++L E
Sbjct: 1 MAKYLAQIIVMGVQVVGRAFARALRQEFAASRAAADARGRAGHRSAAAS-NL-SGLSLQE 58
Query: 61 ARDILDIKQLDPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEVK 112
A+ IL++ +L P+E+++ YE LF ND S GGSFY+QSKVVRAKER+D+E+K
Sbjct: 59 AQQILNVSKLSPEEVQKNYEHLFKVNDKSVGGSFYLQSKVVRAKERLDEELK 110
>sp|Q9CQV1|TIM16_MOUSE Mitochondrial import inner membrane translocase subunit TIM16
OS=Mus musculus GN=Pam16 PE=2 SV=1
Length = 125
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/112 (58%), Positives = 87/112 (77%), Gaps = 2/112 (1%)
Query: 1 MAKYIIQIAVLGAQVVGRAFAKALRQEYAASQEAAKRAGGGRQGTAQASENLRTGMTLDE 60
MAKY+ QI V+G QVVGRAFA+ALRQE+AASQ AA G +A AS NL +G++L E
Sbjct: 1 MAKYLAQIIVMGVQVVGRAFARALRQEFAASQAAADARGRAGHQSAAAS-NL-SGLSLQE 58
Query: 61 ARDILDIKQLDPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEVK 112
A+ IL++ +L P+E+++ YE LF ND S GGSFY+QSKVVRAKER+D+E++
Sbjct: 59 AQQILNVSKLSPEEVQKNYEHLFKVNDKSVGGSFYLQSKVVRAKERLDEELR 110
>sp|Q5XGJ0|TIM16_XENTR Mitochondrial import inner membrane translocase subunit tim16
OS=Xenopus tropicalis GN=pam16 PE=2 SV=1
Length = 125
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/111 (57%), Positives = 85/111 (76%), Gaps = 2/111 (1%)
Query: 1 MAKYIIQIAVLGAQVVGRAFAKALRQEYAASQEAAKRAGGGRQGTAQASENLRTGMTLDE 60
MAKY+ QI V+G QVVGRAF +ALRQE+AAS+ AA+ G R GT A+ + +G++L E
Sbjct: 1 MAKYLAQIMVMGMQVVGRAFTRALRQEFAASRAAAEARG--RAGTESAAVSSLSGISLQE 58
Query: 61 ARDILDIKQLDPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEV 111
A+ IL++ +L P+EI++ YE LF ND GGSFY+QSKVVRAKER+DQE+
Sbjct: 59 AQQILNVSKLTPEEIQKNYEHLFKVNDKEVGGSFYLQSKVVRAKERLDQEM 109
>sp|Q6EIX2|TIM16_RAT Mitochondrial import inner membrane translocase subunit TIM16
OS=Rattus norvegicus GN=Magmas-ps1 PE=3 SV=1
Length = 124
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/112 (59%), Positives = 84/112 (75%), Gaps = 3/112 (2%)
Query: 1 MAKYIIQIAVLGAQVVGRAFAKALRQEYAASQEAAKRAGGGRQGTAQASENLRTGMTLDE 60
MAKY+ QI V+G QVVGR FAKALRQE+AASQ AA G +A AS NL +G++L E
Sbjct: 1 MAKYLTQIIVMGVQVVGRDFAKALRQEFAASQAAADARGHAGHQSAAAS-NL-SGLSLQE 58
Query: 61 ARDILDIKQLDPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEVK 112
A+ IL+I +L P+E+ Q YE LF ND S G SFY+QSKVVRAKER+D+E++
Sbjct: 59 AQQILNISKLSPEEV-QNYEHLFKVNDKSVGDSFYLQSKVVRAKERLDEELQ 109
>sp|Q7S6S4|TIM16_NEUCR Mitochondrial import inner membrane translocase subunit tim-16
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pam-16 PE=3 SV=1
Length = 141
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 80/116 (68%), Gaps = 8/116 (6%)
Query: 3 KYIIQIAVLGAQVVGRAFAKALRQEYAASQEAAKRAGGGRQGTAQASENLRTGMTLDEAR 62
+ I Q+ V+G++V+GRAFA+A +Q A+SQ + G T +AS L +GMTLDEA
Sbjct: 4 RLITQVVVVGSRVLGRAFAEAYKQAAASSQYQRAQQKNGNAATGRAS--LTSGMTLDEAC 61
Query: 63 DILDIKQL------DPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEVK 112
IL++ + + +E+ +R++ LF+AND KGGSFY+QSKVVRA+ER++ E+K
Sbjct: 62 KILNVNKPADGTAANMEEVMERFKRLFDANDPEKGGSFYLQSKVVRARERLEAEIK 117
>sp|Q4I375|TIM16_GIBZE Mitochondrial import inner membrane translocase subunit TIM16
OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC
9075 / NRRL 31084) GN=PAM16 PE=3 SV=1
Length = 138
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 76/116 (65%), Gaps = 12/116 (10%)
Query: 3 KYIIQIAVLGAQVVGRAFAKALRQEYAAS--QEAAKRAGGGRQGTAQASENLRTGMTLDE 60
K+++ + G++++GR+F A +Q AAS Q A +AG G +L +GMTLDE
Sbjct: 4 KFVVTAFLTGSRILGRSFVAAYKQAQAASAYQRAQVKAGNTTGGA-----SLSSGMTLDE 58
Query: 61 ARDILDIK-----QLDPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEV 111
A IL++K Q + +E+ RY+ LF+AND KGGSFY+QSK+VRAKER ++E+
Sbjct: 59 ACKILNVKPPAGGQANVEEVLSRYKRLFDANDPQKGGSFYLQSKIVRAKERFEREI 114
>sp|O62250|TIM16_CAEEL Mitochondrial import inner membrane translocase subunit tim-16
OS=Caenorhabditis elegans GN=tim-16 PE=3 SV=1
Length = 136
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 74/115 (64%), Gaps = 6/115 (5%)
Query: 6 IQIAVLGAQVVGRAFAKALRQEYAASQEAAKRAGGGRQGTA-----QASENLRTGMTLDE 60
+++A+ + V +A +A+R E +Q+AA R +A A+ N + G++L+E
Sbjct: 7 LKVALAAGEAVAKALTRAVRDEIKQTQQAAARHAASTGQSASETRENANSNAKLGISLEE 66
Query: 61 ARDILDIKQ-LDPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEVKKV 114
+ IL++K L+ +E+++ YE LFN ND SKGG+ Y+QSKV RAKERID+E ++
Sbjct: 67 SLQILNVKTPLNREEVEKHYEHLFNINDKSKGGTLYLQSKVFRAKERIDEEFGRI 121
>sp|P42949|TIM16_YEAST Mitochondrial import inner membrane translocase subunit TIM16
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAM16 PE=1 SV=1
Length = 149
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 69/112 (61%), Gaps = 10/112 (8%)
Query: 5 IIQIAVLGAQVVGRAFAKALRQEYAASQEAAKRA-GGGRQGTAQASENLRTGMTLDEARD 63
IQ+ + G QV G+AFA+A RQ AASQ + A R+GT + G+TLDE+
Sbjct: 6 FIQVIITGTQVFGKAFAEAYRQ--AASQSVKQGATNASRRGTGKGE---YGGITLDESCK 60
Query: 64 ILDIKQ----LDPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEV 111
IL+I++ L+ +I R+ +LF ND KGGSFY+QSKV RA ER+ E+
Sbjct: 61 ILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKWEL 112
>sp|Q6CK35|TIM16_KLULA Mitochondrial import inner membrane translocase subunit TIM16
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAM16
PE=3 SV=1
Length = 139
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 68/110 (61%), Gaps = 8/110 (7%)
Query: 5 IIQIAVLGAQVVGRAFAKALRQEYAASQEAAKRAGGGRQGTAQASENLRTGMTLDEARDI 64
IQ+ GAQV GRAFA++ RQ A + + A GR +A+ G+TLDE+ I
Sbjct: 6 FIQVIFTGAQVFGRAFAESYRQAAAQTAKQTANASRGRGASAEYG-----GITLDESSKI 60
Query: 65 LDIKQ---LDPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEV 111
L+I+ ++ +I +R+++LF ND KGGSFY+QSK+ RA ER+ E+
Sbjct: 61 LNIENEQDMNLDKINERFKYLFEINDKEKGGSFYLQSKIYRAAERLKYEL 110
>sp|Q754J4|TIM16_ASHGO Mitochondrial import inner membrane translocase subunit TIM16
OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=PAM16 PE=3 SV=2
Length = 136
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 75/119 (63%), Gaps = 19/119 (15%)
Query: 3 KYIIQIAVLGAQVVGRAFAKALRQEYAASQEAAKRAGGGRQGTAQASE------NLRTGM 56
+ ++Q+ GA+V GRAF +A +Q A+Q A +QGT+ A+ N G+
Sbjct: 4 RVLVQVIFTGARVFGRAFTEAYKQ--TAAQMA-------KQGTSSAARSQGGMTNEYGGI 54
Query: 57 TLDEARDILDIKQLDPK----EIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEV 111
TLDE+ IL+I++ P+ +++QR+++LF+ ND KGGSFY+QSK+ RA ER+ E+
Sbjct: 55 TLDESCKILNIEENGPEMNLDKVEQRFKYLFDINDKEKGGSFYLQSKIYRAAERLKWEL 113
>sp|Q5B187|TIM16_EMENI Mitochondrial import inner membrane translocase subunit tim16
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pam16 PE=3 SV=1
Length = 135
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 76/118 (64%), Gaps = 13/118 (11%)
Query: 1 MAKYII-QIAVLGAQVVGRAFAKALRQEYAASQEAAKRAGGGRQGTAQASENLRTGMTLD 59
MA I+ Q+ V GA+V GRAFA+A +Q AAS+ K A + +G+TLD
Sbjct: 1 MAHRIVTQVVVTGARVFGRAFAEAYKQASAASKYQQK-------TGKSAGGSSSSGITLD 53
Query: 60 EARDILDIK-----QLDPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEVK 112
EA IL++K + + +++ +R++ LF+ ND KGGSFY+QSK++RA+ERI+ EV+
Sbjct: 54 EACKILNVKPPQAGETNLEQVMERFKKLFDLNDPQKGGSFYLQSKILRARERIEAEVR 111
>sp|Q60RS2|TIM16_CAEBR Mitochondrial import inner membrane translocase subunit tim-16
OS=Caenorhabditis briggsae GN=tim-16 PE=3 SV=1
Length = 138
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 76/115 (66%), Gaps = 6/115 (5%)
Query: 6 IQIAVLGAQVVGRAFAKALRQEYAASQEAAKR----AGGGRQGTAQ-ASENLRTGMTLDE 60
+++A+ + V +A +A+R E +Q+AA R G T + A+ N + G++L+E
Sbjct: 7 LKVALAAGEAVTKALTRAVRDEIRQTQQAAARHAAATGQSPSETKENANANAKLGISLEE 66
Query: 61 ARDILDIK-QLDPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEVKKV 114
+ IL++K L+ +++++ YE LF ND +KGG+FY+QSKV RAKERID+E+ ++
Sbjct: 67 SLQILNVKTPLNREDVEKHYEHLFAINDKAKGGTFYLQSKVYRAKERIDEELSRL 121
>sp|Q6FT88|TIM16_CANGA Mitochondrial import inner membrane translocase subunit TIM16
OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=PAM16 PE=3 SV=1
Length = 146
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 68/111 (61%), Gaps = 4/111 (3%)
Query: 5 IIQIAVLGAQVVGRAFAKALRQEYAASQEAAKRAGGGRQGTAQASENLRTG-MTLDEARD 63
+++I + G +V+G AFA+A RQ A S + GR T + + G +TLDE+
Sbjct: 6 LVKIVITGTRVLGHAFAEAYRQAAAQSAAKQGASAMGRNKTGRGNAAAEYGGITLDESCK 65
Query: 64 ILDI---KQLDPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEV 111
IL++ K L ++ QR+++LFN ND KGGSFY+QSK+ RA ER+ E+
Sbjct: 66 ILNLDAAKDLKLDKVNQRFDYLFNINDKEKGGSFYLQSKIYRASERLKWEL 116
>sp|Q9C1W5|TIM16_SCHPO Mitochondrial import inner membrane translocase subunit tim16
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pam16 PE=3 SV=1
Length = 128
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 69/106 (65%), Gaps = 9/106 (8%)
Query: 10 VLGAQVVGRAFAKALRQEYA-ASQEAAKRAGGGRQGTAQASENLRTG-MTLDEARDILDI 67
++G+QV+ +AF +A +Q A A+Q++ +A + TA +R G MT+ EA IL+I
Sbjct: 12 IVGSQVMSKAFVQAYKQMIANAAQQSTGQAAASKSSTA-----VRRGEMTIQEAGSILNI 66
Query: 68 KQ--LDPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEV 111
K L+ E+++R++ +F ND KGGSFY+QSKV RA E++ E+
Sbjct: 67 KPESLEEGELEKRFQKMFEINDPKKGGSFYLQSKVFRAHEKLKSEL 112
>sp|Q6BXP3|TIM16_DEBHA Mitochondrial import inner membrane translocase subunit TIM16
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAM16 PE=3 SV=2
Length = 128
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 61/109 (55%), Gaps = 10/109 (9%)
Query: 5 IIQIAVLGAQVVGRAFAKALRQEYAASQEAAKRAGGGRQGTAQASENLRTGMTLDEARDI 64
++ + GA V GRAF +A +Q AA A+ GG + T+ G+ DEA I
Sbjct: 6 LVNVIFTGASVFGRAFTEAYKQ--AAKATASTPQGGAAKSTSVG------GIPTDEALKI 57
Query: 65 LDIKQLDPK--EIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEV 111
LD+K+ D +I ++Y +LF+ N KG SFY+QSKV A + + +E+
Sbjct: 58 LDLKKTDLSVAKIDEKYAYLFDVNSKDKGNSFYLQSKVYYAMDSLRKEL 106
>sp|Q59ZW9|TIM16_CANAL Mitochondrial import inner membrane translocase subunit TIM16
OS=Candida albicans (strain SC5314 / ATCC MYA-2876)
GN=PAM16 PE=3 SV=1
Length = 121
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 10/110 (9%)
Query: 5 IIQIAVLGAQVVGRAFAKALRQEYAASQEAAKRAGGGRQGTAQASENLRTGMTLDEARDI 64
++ + GA V GRAF +A RQ AS A G+ ++EA I
Sbjct: 6 LVNVIFTGASVFGRAFTEAYRQAAKASAAGAAGRPAKASSAG--------GIPVEEAMKI 57
Query: 65 LDIK--QLDPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEVK 112
LD++ +L +++++YE+LFN N +G SFY+QSKV A + + +E++
Sbjct: 58 LDLEKSELSLDKVEEKYEYLFNVNSKEQGNSFYLQSKVYYAMDTLKKELE 107
>sp|Q6C331|TIM16_YARLI Mitochondrial import inner membrane translocase subunit TIM16
OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=PAM16 PE=3 SV=1
Length = 147
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 68/133 (51%), Gaps = 32/133 (24%)
Query: 3 KYIIQIAVLGAQVVGRAFAKALRQEYAASQEAAKRAGGGRQGTAQASENLRTGMTLDEAR 62
+ I Q+ V G QV +AF +A +Q AA+ +AA + T++++ + G+ LDEA
Sbjct: 4 RLIYQVVVTGTQVFAKAFTQAYKQ--AATAQAASK-------TSKSAASKFGGLQLDEAC 54
Query: 63 DILDIKQ---------LDPK--------------EIKQRYEFLFNANDSSKGGSFYIQSK 99
ILD+ + L+ K +I +++ L+ N K GSFY+QSK
Sbjct: 55 KILDVDETALDKVVAELNKKHKLEDIAESESVLAQIDKKFTHLYTVNSEHKSGSFYLQSK 114
Query: 100 VVRAKERIDQEVK 112
V RA ERI E++
Sbjct: 115 VYRAMERIRGELE 127
>sp|Q6CNW2|TIM14_KLULA Mitochondrial import inner membrane translocase subunit TIM14
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAM18
PE=3 SV=1
Length = 163
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 30 ASQEAAKRAGGGRQGTAQASENLRTGMTLDEARDILDIKQ--LDPKEIKQRYEFLFNAND 87
A + +KR GG QG M EA IL++ + L K++K+ + + AN
Sbjct: 77 AYKSVSKRLGGSSQGVKYLKGGFDPKMNAKEALAILNLNETNLSKKKLKEVHRRIMLANH 136
Query: 88 SSKGGSFYIQSKVVRAKERIDQEV 111
KGGS Y+ +K+ AK+ ++++V
Sbjct: 137 PDKGGSPYLATKINEAKDFLEKKV 160
>sp|Q54SV6|TIM16_DICDI Mitochondrial import inner membrane translocase subunit tim16
OS=Dictyostelium discoideum GN=timm16 PE=3 SV=1
Length = 113
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 11/114 (9%)
Query: 2 AKYIIQIAVLGAQVVGRAFAKALRQEYAASQEAAKRAGGGRQGTAQASENLRTGMTLDEA 61
A+ I +I V+ R+ A +Q ++ G A S ++++ M+ EA
Sbjct: 3 ARLIAKIVFTSGTVLVRSIQMAYKQALLQAESG--------MGAAAGSMDVKSKMSPIEA 54
Query: 62 RDIL---DIKQLDPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEVK 112
R IL +++ + ++I ++Y L ND GGS Y+Q K+ AK + +K
Sbjct: 55 RKILGLENVETVSKEDIDKKYNELLTINDPKDGGSEYLQIKISGAKHCLHSALK 108
>sp|Q59SI2|TIM14_CANAL Mitochondrial import inner membrane translocase subunit TIM14
OS=Candida albicans (strain SC5314 / ATCC MYA-2876)
GN=PAM18 PE=3 SV=1
Length = 157
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 56 MTLDEARDILDIKQ--LDPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQ 109
MT EA IL++K+ L ++K+++ L AN KGGS YI +K+ AK+ +D+
Sbjct: 95 MTAKEALQILNLKETNLSKLKLKEQHRKLMMANHPDKGGSSYIATKINEAKDFLDK 150
>sp|Q4WI88|TIM14_ASPFU Mitochondrial import inner membrane translocase subunit tim14
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pam18 PE=3 SV=1
Length = 105
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 11/110 (10%)
Query: 4 YIIQIAVLGAQVVGRAFAKALRQEYAASQEAAKRAGGGRQGTAQASENLRTGMTLDEARD 63
+ I + V A +GRA ALR+ + G G A MT EA
Sbjct: 5 FAIGLGVATAAFLGRAGYVALRRY---------QGGINAMGKAFYKGGFEPRMTRREAAL 55
Query: 64 ILDIKQ--LDPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEV 111
IL++ + L+ +++++++ L N +GGS Y+ +K+ AKE +D+ +
Sbjct: 56 ILELPERTLNKEKVRKKHRQLMLLNHPDRGGSPYLATKINEAKEFLDKHI 105
>sp|Q6BH37|TIM14_DEBHA Mitochondrial import inner membrane translocase subunit TIM14
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAM18 PE=3 SV=2
Length = 172
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 56 MTLDEARDILDIKQ--LDPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQ 109
MT EA IL++K+ L ++K+++ L AN KGGS Y+ +KV AK+ +++
Sbjct: 110 MTPKEALQILNLKETNLSQAKLKEQHRKLMMANHPDKGGSSYLATKVNEAKDILEK 165
>sp|Q54QN1|TIM14_DICDI Mitochondrial import inner membrane translocase subunit TIM14
OS=Dictyostelium discoideum GN=dnajc19 PE=3 SV=1
Length = 113
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 56 MTLDEARDILDIKQLDPKE-IKQRYEFLFNANDSSKGGSFYIQSKVVRAK 104
MT EA +IL +K+ KE IK R++ L N KGGS Y+ +K+ A+
Sbjct: 55 MTPAEAANILGLKEESTKEEIKIRHKLLMIKNHPDKGGSSYLATKINEAR 104
>sp|Q6FPU1|TIM14_CANGA Mitochondrial import inner membrane translocase subunit TIM14
OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=PAM18 PE=3 SV=1
Length = 153
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 37 RAGGGRQGTAQASENLRTGMTLDEARDILDIKQ--LDPKEIKQRYEFLFNANDSSKGGSF 94
R GG+ T M EA IL++K+ L K++K+ + + AN KGGS
Sbjct: 73 RLNGGKAATQFLKGGFDPKMNAKEALQILNLKENNLTTKKLKEVHRKIMLANHPDKGGSP 132
Query: 95 YIQSKVVRAKERIDQE 110
Y+ +K+ AK+ ++++
Sbjct: 133 YLATKINEAKDFLEKK 148
>sp|Q759D2|TIM14_ASHGO Mitochondrial import inner membrane translocase subunit TIM14
OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=PAM18 PE=3 SV=1
Length = 158
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 37 RAGGGRQGTAQASENLRTGMTLDEARDILDIKQ--LDPKEIKQRYEFLFNANDSSKGGSF 94
R GG++ T M EA IL++ + L K +K + + AN KGGS
Sbjct: 79 RMNGGKEATKFLKGGFDPKMNTKEALAILNLTESTLTKKRVKDVHRKIMLANHPDKGGSP 138
Query: 95 YIQSKVVRAKERIDQ 109
Y+ +K+ AK+ +++
Sbjct: 139 YLATKINEAKDFLEK 153
>sp|P42834|MDJ2_YEAST Mitochondrial DnaJ homolog 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MDJ2 PE=1 SV=1
Length = 146
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 56 MTLDEARDILDI-----KQLDPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQE 110
MT EA ILDI LD K +K+++ N +GGS Y+ +K+ AKE +++
Sbjct: 81 MTEPEALLILDISAREINHLDEKLLKKKHRKAMVRNHPDRGGSPYMAAKINEAKEVLERS 140
Query: 111 V 111
V
Sbjct: 141 V 141
>sp|Q9UT37|TIM14_SCHPO Mitochondrial import inner membrane translocase subunit tim14
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pam18 PE=3 SV=1
Length = 140
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 56 MTLDEARDILDI--KQLDPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQE 110
M+ EA IL + + L ++IK+ + L AN +GGS Y+ SKV AK +D +
Sbjct: 47 MSRAEAIQILSLNNRTLTRQKIKEAHRRLMLANHPDRGGSPYVASKVNEAKSLLDAD 103
>sp|Q07914|TIM14_YEAST Mitochondrial import inner membrane translocase subunit TIM14
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAM18 PE=1 SV=1
Length = 168
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 11 LGAQVVGRAFAKALRQEYAAS--QEAAKRAGGGRQGTAQASENLRTGMTLDEARDILDIK 68
+G V F L + A + +K GG+ TA M EA IL++
Sbjct: 61 MGEHPVITGFGAFLTLYFTAGAYKSISKGLNGGKSTTAFLKGGFDPKMNSKEALQILNLT 120
Query: 69 Q--LDPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQ 109
+ L K++K+ + + AN KGGS ++ +K+ AK+ +++
Sbjct: 121 ENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLEK 163
>sp|Q4I7T5|TIM14_GIBZE Mitochondrial import inner membrane translocase subunit TIM14
OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC
9075 / NRRL 31084) GN=PAM18 PE=3 SV=1
Length = 105
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 37 RAGGGRQGTAQASENLRTGMTLDEARDILDIKQ--LDPKEIKQRYEFLFNANDSSKGGSF 94
R G G G A MT EA IL + + + ++++ + L N +GGS
Sbjct: 29 RGGVGAMGKAFYKGGFEAKMTKKEATLILSLNERAITKDKVRKAHRTLMLLNHPDRGGSP 88
Query: 95 YIQSKVVRAKERIDQE 110
Y+ +KV AKE +D+
Sbjct: 89 YLATKVNEAKEFLDKN 104
>sp|Q5B4H1|TIM14_EMENI Mitochondrial import inner membrane translocase subunit tim14
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pam18 PE=3 SV=1
Length = 105
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 56 MTLDEARDILDIKQ--LDPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEV 111
M EA IL++ + L+ +++++++ L N +GGS Y+ +K+ AKE +D+
Sbjct: 48 MNRREAALILELPERTLNKEKVRKKHRQLMLLNHPDRGGSPYLATKINEAKEFLDKHT 105
>sp|B7GT76|LEU1_BIFLS 2-isopropylmalate synthase OS=Bifidobacterium longum subsp.
infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 /
NCTC 11817 / S12) GN=leuA PE=3 SV=1
Length = 638
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Query: 30 ASQEAAKRAGGGRQGTAQASENLRTGMTLDEARDILDIKQLDPKEIKQRYEFLFNAND-S 88
+ Q+A K+ RQ A+ R G LD ++ +DPK+I + YE + N S
Sbjct: 378 SHQDAIKKGLEARQVAAE-----RAGADLDSFVWLVPYLPIDPKDIGRTYEAIIRVNSQS 432
Query: 89 SKGGSFYI--QSKVVRAKERIDQEVKKVSGDYS 119
KGG Y+ + + +R+ E K+ +Y+
Sbjct: 433 GKGGMAYLLKTNHNLDLPKRLQIEFDKIVQNYA 465
>sp|Q8DB38|MNMC_VIBVU tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Vibrio vulnificus (strain CMCP6) GN=mnmC
PE=3 SV=1
Length = 672
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 2 AKYIIQIAVLGAQVVGRAFAKALRQE------YAASQEAAKRAGGGRQG 44
A ++ IA++G + A AKAL Q Y +AA+ A G RQG
Sbjct: 260 ASHLDSIAIIGGGIASAALAKALVQRGQKVTLYCKHAQAAEGASGNRQG 308
>sp|Q7MIT5|MNMC_VIBVY tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Vibrio vulnificus (strain YJ016) GN=mnmC
PE=3 SV=1
Length = 672
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 2 AKYIIQIAVLGAQVVGRAFAKALRQE------YAASQEAAKRAGGGRQG 44
A ++ IA++G + A AKAL Q Y +AA+ A G RQG
Sbjct: 260 ASHLDSIAIIGGGIASAALAKALVQRGQKVTLYCKHAQAAEGASGNRQG 308
>sp|A3CSY4|TYPH_METMJ Putative thymidine phosphorylase OS=Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1) GN=Memar_0551 PE=3
SV=1
Length = 507
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 33 EAAKRAGGGRQGTAQASENLRTGMTLDEARDILDIKQLDP 72
E A +AG G QG A++ LR+G L++ R I++I+ DP
Sbjct: 364 EMAGKAGPG-QGARAAADILRSGKALEKMRQIIEIQGGDP 402
>sp|Q7RX75|TIM14_NEUCR Mitochondrial import inner membrane translocase subunit tim-14
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pam-18 PE=3 SV=1
Length = 105
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 37 RAGGGRQGTAQASENLRTGMTLDEARDILDIKQ--LDPKEIKQRYEFLFNANDSSKGGSF 94
R G G G A M EA IL + + + +I++ + L N +GGS
Sbjct: 29 RGGVGALGKAFYKGGFEPRMNKKEASLILSLNERTITKDKIRKAHRTLMLLNHPDRGGSP 88
Query: 95 YIQSKVVRAKERIDQEV 111
Y+ +KV AKE +++ V
Sbjct: 89 YLATKVNEAKEFLEKSV 105
>sp|B6YX39|NADM_THEON Nicotinamide-nucleotide adenylyltransferase OS=Thermococcus
onnurineus (strain NA1) GN=TON_1164 PE=3 SV=1
Length = 187
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 12/65 (18%)
Query: 44 GTAQASENLRTGMTLDEARDILDIKQLDPKEIKQRYEFL------FNANDSSKGGSFYIQ 97
G+AQAS L+ T E ++L I+ LD +++RY + FNA S+ Y+Q
Sbjct: 37 GSAQASHTLKNPFTTSERMEML-IRALDEAGLEKRYYLIPLPDINFNAIWST-----YVQ 90
Query: 98 SKVVR 102
S V R
Sbjct: 91 SMVPR 95
>sp|Q6PBT7|TIM14_DANRE Mitochondrial import inner membrane translocase subunit TIM14
OS=Danio rerio GN=dnajc19 PE=2 SV=1
Length = 115
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 56 MTLDEARDILDIKQLDPK-EIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEVKK 113
M EA IL + K +I++ + L N +GGS Y+ +K+ AK+ +D + KK
Sbjct: 57 MNRREASLILGVSPTANKTKIREAHRKLMILNHPDRGGSPYLAAKINEAKDLLDGQAKK 115
>sp|Q2FYS1|TYRA_STAA8 Prephenate dehydrogenase OS=Staphylococcus aureus (strain NCTC
8325) GN=tyrA PE=4 SV=1
Length = 363
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 38 AGGGRQGTAQASENLRT--GMTLDEARDILD-IKQLDPKEIKQRYEFLFNANDSSKGGSF 94
AGG R T AS N + +TL IL+ I+QL K Q E L +NDS K SF
Sbjct: 215 AGGFRDITRIASSNAQMWKDITLSNKTYILEMIRQL--KSQFQDLERLIESNDSEKLLSF 272
Query: 95 YIQSKVVR 102
+ Q+K R
Sbjct: 273 FAQAKSYR 280
>sp|Q8NWU6|TYRA_STAAW Prephenate dehydrogenase OS=Staphylococcus aureus (strain MW2)
GN=tyrA PE=4 SV=1
Length = 363
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 38 AGGGRQGTAQASENLRT--GMTLDEARDILD-IKQLDPKEIKQRYEFLFNANDSSKGGSF 94
AGG R T AS N + +TL IL+ I+QL K Q E L +NDS K SF
Sbjct: 215 AGGFRDITRIASSNAQMWKDITLSNKTYILEMIRQL--KSQFQDLERLIESNDSEKLLSF 272
Query: 95 YIQSKVVR 102
+ Q+K R
Sbjct: 273 FAQAKSYR 280
>sp|Q6G9J4|TYRA_STAAS Prephenate dehydrogenase OS=Staphylococcus aureus (strain MSSA476)
GN=tyrA PE=4 SV=1
Length = 363
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 38 AGGGRQGTAQASENLRT--GMTLDEARDILD-IKQLDPKEIKQRYEFLFNANDSSKGGSF 94
AGG R T AS N + +TL IL+ I+QL K Q E L +NDS K SF
Sbjct: 215 AGGFRDITRIASSNAQMWKDITLSNKTYILEMIRQL--KSQFQDLERLIESNDSEKLLSF 272
Query: 95 YIQSKVVR 102
+ Q+K R
Sbjct: 273 FAQAKSYR 280
>sp|Q5HG54|TYRA_STAAC Prephenate dehydrogenase OS=Staphylococcus aureus (strain COL)
GN=tyrA PE=4 SV=1
Length = 363
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 38 AGGGRQGTAQASENLRT--GMTLDEARDILD-IKQLDPKEIKQRYEFLFNANDSSKGGSF 94
AGG R T AS N + +TL IL+ I+QL K Q E L +NDS K SF
Sbjct: 215 AGGFRDITRIASSNAQMWKDITLSNKTYILEMIRQL--KSQFQDLERLIESNDSEKLLSF 272
Query: 95 YIQSKVVR 102
+ Q+K R
Sbjct: 273 FAQAKSYR 280
>sp|Q2FH71|TYRA_STAA3 Prephenate dehydrogenase OS=Staphylococcus aureus (strain USA300)
GN=tyrA PE=4 SV=1
Length = 363
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 38 AGGGRQGTAQASENLRT--GMTLDEARDILD-IKQLDPKEIKQRYEFLFNANDSSKGGSF 94
AGG R T AS N + +TL IL+ I+QL K Q E L +NDS K SF
Sbjct: 215 AGGFRDITRIASSNAQMWKDITLSNKTYILEMIRQL--KSQFQDLERLIESNDSEKLLSF 272
Query: 95 YIQSKVVR 102
+ Q+K R
Sbjct: 273 FAQAKSYR 280
>sp|B9DJK9|Y414_STACT UPF0042 nucleotide-binding protein Sca_0414 OS=Staphylococcus
carnosus (strain TM300) GN=Sca_0414 PE=3 SV=2
Length = 307
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 15 VVGRAFAKA----LRQEYAASQEAAKRAGGGRQGTAQASENLRTGMTLDEARDI----LD 66
+V F +A L Y ++ A G++ A E R +T E R I +D
Sbjct: 94 IVDVMFVEASEAKLISRYKETRRAHPLNDNGQRSLIDAIEEERNSLT--EIRSIANYVID 151
Query: 67 IKQLDPKEIKQRYEFLFNAND 87
L PKE++ + LFN ND
Sbjct: 152 TTVLKPKELRAQINHLFNRND 172
>sp|Q3ZBN8|TIM14_BOVIN Mitochondrial import inner membrane translocase subunit TIM14
OS=Bos taurus GN=DNAJC19 PE=3 SV=3
Length = 116
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 56 MTLDEARDILDIKQLDPK-EIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEVKK 113
MT EA IL + K +I+ + + N KGGS YI +K+ AK+ ++ + KK
Sbjct: 58 MTKREAALILGVSPTANKAKIRDAHRRIMLLNHPDKGGSPYIAAKINEAKDLLEGQAKK 116
>sp|Q617M0|TIM14_CAEBR Mitochondrial import inner membrane translocase subunit TIM14
OS=Caenorhabditis briggsae GN=dnj-21 PE=3 SV=1
Length = 111
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 56 MTLDEARDILDI-KQLDPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQ 109
M+ EA IL I P +IK ++ + N +GGS Y+ +K+ AK+ ++
Sbjct: 54 MSRSEAAKILGITPSAKPAKIKDAHKKVMIVNHPDRGGSPYLAAKINEAKDLMES 108
>sp|Q7A5R7|TYRA_STAAN Prephenate dehydrogenase OS=Staphylococcus aureus (strain N315)
GN=tyrA PE=4 SV=1
Length = 363
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 38 AGGGRQGTAQASENLRT--GMTLDEARDILD-IKQLDPKEIKQRYEFLFNANDSSKGGSF 94
AGG R T AS N + +TL IL+ I+QL K Q E L +NDS K SF
Sbjct: 215 AGGFRDITRIASSNAQMWKDITLSNKTYILEMIRQL--KSQFQDLERLIESNDSEKLLSF 272
Query: 95 YIQSKVVR 102
+ Q+K R
Sbjct: 273 FAQAKSYR 280
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.129 0.340
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,831,756
Number of Sequences: 539616
Number of extensions: 1365442
Number of successful extensions: 4393
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 4322
Number of HSP's gapped (non-prelim): 79
length of query: 120
length of database: 191,569,459
effective HSP length: 87
effective length of query: 33
effective length of database: 144,622,867
effective search space: 4772554611
effective search space used: 4772554611
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)