Query psy9282
Match_columns 120
No_of_seqs 143 out of 749
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 23:29:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9282.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9282hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03656 Pam16: Pam16; InterP 100.0 1.5E-37 3.2E-42 225.3 7.6 114 2-117 3-117 (127)
2 KOG3442|consensus 100.0 4.2E-36 9.1E-41 216.2 12.7 112 1-112 1-113 (132)
3 KOG0723|consensus 100.0 4.7E-29 1E-33 175.8 10.2 99 3-109 4-107 (112)
4 PTZ00100 DnaJ chaperone protei 99.9 8.9E-23 1.9E-27 146.1 11.2 103 2-108 3-115 (116)
5 PHA03102 Small T antigen; Revi 99.4 6.2E-13 1.3E-17 99.2 7.2 59 57-115 3-64 (153)
6 cd06257 DnaJ DnaJ domain or J- 99.2 2.1E-11 4.5E-16 74.2 5.2 48 61-108 2-54 (55)
7 smart00271 DnaJ DnaJ molecular 99.2 1.6E-11 3.5E-16 76.0 4.8 51 60-110 2-58 (60)
8 PF00226 DnaJ: DnaJ domain; I 99.2 6.8E-11 1.5E-15 74.5 7.4 54 60-113 1-60 (64)
9 PTZ00037 DnaJ_C chaperone prot 99.2 8.6E-11 1.9E-15 99.3 7.8 62 52-113 21-83 (421)
10 PRK09430 djlA Dna-J like membr 99.2 1.1E-10 2.3E-15 93.4 7.9 58 54-111 195-264 (267)
11 COG0484 DnaJ DnaJ-class molecu 99.0 2.3E-10 4.9E-15 95.6 5.3 58 56-113 1-63 (371)
12 PHA02624 large T antigen; Prov 99.0 1.1E-09 2.5E-14 96.5 7.0 56 58-113 10-68 (647)
13 PRK14296 chaperone protein Dna 98.9 2E-09 4.4E-14 89.4 5.2 58 56-113 1-62 (372)
14 PRK14299 chaperone protein Dna 98.9 2.6E-09 5.6E-14 86.0 5.5 57 56-112 1-61 (291)
15 KOG0721|consensus 98.9 3.9E-09 8.4E-14 83.0 5.8 54 60-113 100-158 (230)
16 PRK14288 chaperone protein Dna 98.9 3.3E-09 7.2E-14 88.0 5.7 54 60-113 4-62 (369)
17 PRK14286 chaperone protein Dna 98.9 3.5E-09 7.5E-14 88.0 5.7 58 56-113 1-63 (372)
18 KOG0713|consensus 98.9 5.3E-09 1.1E-13 86.4 6.4 55 58-112 15-74 (336)
19 PRK10266 curved DNA-binding pr 98.9 4.3E-09 9.3E-14 85.2 5.7 58 56-113 1-62 (306)
20 PRK10767 chaperone protein Dna 98.8 4E-09 8.6E-14 87.3 5.4 58 56-113 1-63 (371)
21 PRK14279 chaperone protein Dna 98.8 4.2E-09 9.1E-14 88.1 5.5 54 59-112 9-67 (392)
22 PRK14287 chaperone protein Dna 98.8 4.2E-09 9E-14 87.5 5.4 58 56-113 1-62 (371)
23 PRK14285 chaperone protein Dna 98.8 4.1E-09 9E-14 87.3 4.7 54 59-112 3-61 (365)
24 PRK14294 chaperone protein Dna 98.8 5.7E-09 1.2E-13 86.4 5.5 58 56-113 1-63 (366)
25 PRK14281 chaperone protein Dna 98.8 8.5E-09 1.8E-13 86.3 6.5 55 59-113 3-62 (397)
26 PRK14280 chaperone protein Dna 98.8 5.4E-09 1.2E-13 86.9 5.1 58 56-113 1-62 (376)
27 PRK14278 chaperone protein Dna 98.8 6E-09 1.3E-13 86.7 5.3 54 60-113 4-61 (378)
28 PRK14283 chaperone protein Dna 98.8 8.9E-09 1.9E-13 85.5 5.5 55 59-113 5-63 (378)
29 PRK14300 chaperone protein Dna 98.8 1.4E-08 3.1E-13 84.2 6.5 55 59-113 3-61 (372)
30 PRK14282 chaperone protein Dna 98.8 9.5E-09 2.1E-13 85.1 5.3 58 56-113 1-64 (369)
31 PRK14301 chaperone protein Dna 98.8 1.1E-08 2.4E-13 85.0 5.6 58 56-113 1-63 (373)
32 PRK14276 chaperone protein Dna 98.7 1.5E-08 3.2E-13 84.3 5.6 56 57-112 2-61 (380)
33 PRK14298 chaperone protein Dna 98.7 1.5E-08 3.2E-13 84.4 5.1 55 59-113 5-63 (377)
34 PRK14295 chaperone protein Dna 98.7 1.8E-08 4E-13 84.1 5.3 54 59-112 9-67 (389)
35 PRK14297 chaperone protein Dna 98.7 1.9E-08 4.1E-13 83.6 5.1 55 59-113 4-63 (380)
36 TIGR02349 DnaJ_bact chaperone 98.7 3.5E-08 7.5E-13 81.1 6.3 53 61-113 2-58 (354)
37 PRK14277 chaperone protein Dna 98.7 2E-08 4.4E-13 83.7 5.1 55 59-113 5-64 (386)
38 PRK14291 chaperone protein Dna 98.7 5.8E-08 1.3E-12 80.9 6.6 54 60-113 4-61 (382)
39 PRK14292 chaperone protein Dna 98.6 5.3E-08 1.1E-12 80.6 6.2 53 60-112 3-59 (371)
40 PRK14290 chaperone protein Dna 98.6 7.9E-08 1.7E-12 79.6 5.7 54 60-113 4-63 (365)
41 KOG0715|consensus 98.6 8.3E-08 1.8E-12 77.7 5.5 62 54-115 38-103 (288)
42 PRK14284 chaperone protein Dna 98.6 8.5E-08 1.8E-12 80.1 5.6 53 60-112 2-59 (391)
43 PRK14289 chaperone protein Dna 98.6 9.2E-08 2E-12 79.6 5.7 56 58-113 4-64 (386)
44 KOG1789|consensus 98.6 2.5E-07 5.4E-12 86.1 8.4 74 16-110 1259-1338(2235)
45 PRK14293 chaperone protein Dna 98.5 1.5E-07 3.3E-12 78.1 5.9 54 60-113 4-61 (374)
46 KOG0712|consensus 98.5 1.2E-07 2.6E-12 78.5 4.9 48 62-109 7-56 (337)
47 KOG0716|consensus 98.5 3.6E-07 7.7E-12 73.9 6.0 58 55-112 27-89 (279)
48 PRK05014 hscB co-chaperone Hsc 98.5 4.2E-07 9.2E-12 68.5 6.0 52 61-112 3-66 (171)
49 COG2214 CbpA DnaJ-class molecu 98.4 5.7E-07 1.2E-11 65.5 6.5 55 59-113 6-66 (237)
50 KOG0718|consensus 98.4 6.4E-07 1.4E-11 77.2 6.4 54 59-112 9-70 (546)
51 TIGR03835 termin_org_DnaJ term 98.4 6.6E-07 1.4E-11 80.9 6.2 53 60-112 3-59 (871)
52 PRK01356 hscB co-chaperone Hsc 98.3 2.1E-06 4.5E-11 64.6 6.2 52 61-112 4-65 (166)
53 KOG0717|consensus 98.3 1.3E-06 2.7E-11 75.1 5.5 51 59-109 8-64 (508)
54 PRK00294 hscB co-chaperone Hsc 98.2 1.6E-06 3.4E-11 65.8 4.8 52 61-112 6-69 (173)
55 PRK03578 hscB co-chaperone Hsc 98.2 2.8E-06 6.1E-11 64.5 5.4 54 59-112 6-71 (176)
56 PTZ00341 Ring-infected erythro 98.2 3.3E-06 7.1E-11 78.0 5.8 55 59-113 573-631 (1136)
57 KOG0719|consensus 98.1 5.3E-06 1.2E-10 66.3 5.6 53 60-112 15-74 (264)
58 KOG0691|consensus 98.1 9.8E-06 2.1E-10 66.3 6.3 53 59-111 5-62 (296)
59 KOG0720|consensus 98.1 3.8E-06 8.3E-11 72.1 4.0 54 59-112 235-292 (490)
60 PRK01773 hscB co-chaperone Hsc 97.7 0.00014 3.1E-09 55.2 6.2 52 61-112 4-67 (173)
61 KOG0568|consensus 97.7 0.00025 5.3E-09 57.3 7.8 59 55-113 43-106 (342)
62 KOG0722|consensus 97.6 3.2E-05 7E-10 62.8 2.7 55 58-112 32-90 (329)
63 KOG0550|consensus 97.5 9.3E-05 2E-09 63.5 4.1 54 60-113 374-433 (486)
64 TIGR00714 hscB Fe-S protein as 97.5 0.00017 3.7E-09 53.7 4.5 42 71-112 4-54 (157)
65 COG5407 SEC63 Preprotein trans 97.5 0.00015 3.3E-09 62.8 4.8 53 61-113 100-162 (610)
66 KOG1150|consensus 97.4 0.00032 7E-09 55.3 5.3 51 60-112 54-105 (250)
67 KOG0624|consensus 97.4 0.00031 6.7E-09 59.7 5.2 57 56-112 391-455 (504)
68 KOG0714|consensus 97.3 0.00021 4.5E-09 54.5 3.5 54 59-112 3-62 (306)
69 PF13446 RPT: A repeated domai 96.5 0.021 4.5E-07 35.9 6.8 33 55-88 1-34 (62)
70 COG1076 DjlA DnaJ-domain-conta 96.4 0.0086 1.9E-07 45.0 5.5 46 59-104 113-163 (174)
71 KOG0431|consensus 96.1 0.0081 1.7E-07 51.7 4.3 34 71-104 401-441 (453)
72 COG5269 ZUO1 Ribosome-associat 95.8 0.016 3.4E-07 47.9 4.8 53 59-111 43-105 (379)
73 PF11833 DUF3353: Protein of u 87.4 1.8 3.8E-05 33.5 5.6 40 71-114 5-45 (194)
74 PF12728 HTH_17: Helix-turn-he 78.4 1.2 2.6E-05 26.2 1.1 17 56-72 2-18 (51)
75 PF13384 HTH_23: Homeodomain-l 77.7 0.84 1.8E-05 26.7 0.3 27 55-81 17-43 (50)
76 PF14687 DUF4460: Domain of un 74.1 16 0.00034 25.9 6.1 44 72-116 8-53 (112)
77 PF05344 DUF746: Domain of Unk 70.7 6.9 0.00015 25.5 3.3 37 53-89 11-47 (65)
78 TIGR00824 EIIA-man PTS system, 70.6 12 0.00026 26.0 4.8 35 62-96 30-74 (116)
79 TIGR01764 excise DNA binding d 69.6 2.8 6.1E-05 23.5 1.2 17 56-72 2-18 (49)
80 KOG3192|consensus 68.9 13 0.00028 28.4 4.9 54 59-112 8-73 (168)
81 PRK09649 RNA polymerase sigma 64.2 8.1 0.00018 28.4 3.0 39 52-90 143-182 (185)
82 PF13518 HTH_28: Helix-turn-he 60.1 12 0.00025 21.5 2.7 28 54-81 11-38 (52)
83 PF01710 HTH_Tnp_IS630: Transp 58.7 8.7 0.00019 26.8 2.2 40 53-93 16-55 (119)
84 PF03820 Mtc: Tricarboxylate c 56.4 12 0.00027 30.9 3.1 41 51-91 22-69 (308)
85 cd04762 HTH_MerR-trunc Helix-T 56.3 7.2 0.00016 21.6 1.3 17 56-72 1-17 (49)
86 KOG3767|consensus 54.2 12 0.00026 31.4 2.6 42 51-92 40-88 (328)
87 COG1076 DjlA DnaJ-domain-conta 54.1 20 0.00042 26.7 3.6 42 72-113 17-67 (174)
88 smart00421 HTH_LUXR helix_turn 52.7 5.9 0.00013 22.5 0.5 30 53-82 16-46 (58)
89 PF13374 TPR_10: Tetratricopep 51.3 9.6 0.00021 20.3 1.2 17 73-89 26-42 (42)
90 PF08281 Sigma70_r4_2: Sigma-7 50.9 12 0.00027 21.9 1.7 28 51-78 22-50 (54)
91 cd04761 HTH_MerR-SF Helix-Turn 48.5 11 0.00024 21.3 1.2 17 56-72 1-17 (49)
92 PF13720 Acetyltransf_11: Udp 48.3 16 0.00035 24.2 2.2 23 66-88 27-49 (83)
93 PF04967 HTH_10: HTH DNA bindi 46.5 21 0.00046 22.0 2.3 31 54-84 22-53 (53)
94 KOG1573|consensus 46.0 29 0.00063 26.9 3.4 40 51-90 68-115 (204)
95 PF12669 P12: Virus attachment 46.0 22 0.00047 22.3 2.3 21 4-24 2-24 (58)
96 PRK12529 RNA polymerase sigma 45.8 26 0.00057 25.4 3.1 33 53-85 141-174 (178)
97 PF04545 Sigma70_r4: Sigma-70, 45.0 20 0.00043 20.8 2.0 20 52-71 17-36 (50)
98 PF07739 TipAS: TipAS antibiot 44.7 49 0.0011 22.1 4.2 39 63-104 48-88 (118)
99 PRK12511 RNA polymerase sigma 44.5 35 0.00076 25.1 3.7 39 53-91 125-167 (182)
100 COG1510 Predicted transcriptio 44.0 1.1E+02 0.0025 23.6 6.4 60 52-113 38-108 (177)
101 cd06170 LuxR_C_like C-terminal 43.6 27 0.00059 19.8 2.4 19 54-72 14-32 (57)
102 PF04512 Baculo_PEP_N: Baculov 43.1 19 0.00041 25.1 1.9 33 56-88 17-49 (97)
103 PF08989 DUF1896: Domain of un 41.8 34 0.00074 25.5 3.2 35 79-113 15-50 (144)
104 PRK12547 RNA polymerase sigma 40.5 34 0.00073 24.3 3.0 35 54-88 127-162 (164)
105 PF13551 HTH_29: Winged helix- 40.0 24 0.00051 23.1 1.9 28 54-81 10-38 (112)
106 PRK03957 V-type ATP synthase s 39.0 1.1E+02 0.0025 20.7 5.3 17 88-104 73-94 (100)
107 PTZ00119 40S ribosomal protein 35.3 1.8E+02 0.004 24.2 6.7 74 47-120 74-154 (302)
108 cd00131 PAX Paired Box domain 35.1 32 0.0007 24.4 2.1 30 53-82 31-60 (128)
109 COG3415 Transposase and inacti 33.8 24 0.00053 25.9 1.3 29 53-81 19-47 (138)
110 PRK05626 rpsO 30S ribosomal pr 33.8 1.1E+02 0.0024 20.8 4.5 33 87-119 18-51 (89)
111 PRK12527 RNA polymerase sigma 33.3 50 0.0011 23.1 2.9 18 96-113 138-155 (159)
112 PRK09647 RNA polymerase sigma 33.3 51 0.0011 24.7 3.1 37 53-89 152-192 (203)
113 PF02042 RWP-RK: RWP-RK domain 32.9 29 0.00063 21.5 1.4 18 55-72 15-32 (52)
114 PRK12542 RNA polymerase sigma 32.8 37 0.00081 24.6 2.2 19 53-71 136-154 (185)
115 TIGR02947 SigH_actino RNA poly 32.7 61 0.0013 23.6 3.3 20 52-71 144-163 (193)
116 PRK11923 algU RNA polymerase s 32.3 40 0.00086 24.5 2.3 17 54-70 153-169 (193)
117 smart00422 HTH_MERR helix_turn 32.0 28 0.00061 21.1 1.2 17 56-72 1-17 (70)
118 PRK12522 RNA polymerase sigma 31.5 50 0.0011 23.6 2.6 20 52-71 132-151 (173)
119 PRK09635 sigI RNA polymerase s 31.1 1.4E+02 0.0029 24.0 5.3 51 53-104 132-183 (290)
120 PRK07037 extracytoplasmic-func 30.9 47 0.001 23.3 2.4 34 54-87 124-161 (163)
121 PRK09636 RNA polymerase sigma 30.8 1.3E+02 0.0028 23.7 5.2 51 53-104 129-180 (293)
122 smart00351 PAX Paired Box doma 30.5 40 0.00088 23.7 2.0 30 53-82 31-60 (125)
123 COG2452 Predicted site-specifi 29.9 34 0.00074 26.7 1.6 14 56-69 2-15 (193)
124 PRK09645 RNA polymerase sigma 29.8 62 0.0014 22.9 2.9 18 54-71 133-150 (173)
125 PF00196 GerE: Bacterial regul 29.5 35 0.00077 20.4 1.4 29 53-81 16-45 (58)
126 TIGR02954 Sig70_famx3 RNA poly 29.2 73 0.0016 22.5 3.2 19 53-71 133-151 (169)
127 PRK00118 putative DNA-binding 29.2 60 0.0013 22.7 2.6 36 52-87 30-69 (104)
128 TIGR03879 near_KaiC_dom probab 29.0 64 0.0014 21.3 2.6 19 53-71 30-48 (73)
129 PRK09642 RNA polymerase sigma 28.6 66 0.0014 22.5 2.8 18 54-71 121-138 (160)
130 PRK05602 RNA polymerase sigma 28.4 68 0.0015 23.1 3.0 17 54-70 143-159 (186)
131 PRK15088 PTS system mannose-sp 28.3 1.2E+02 0.0025 25.1 4.6 35 62-96 31-75 (322)
132 PF08673 RsbU_N: Phosphoserine 28.1 1.8E+02 0.0039 19.2 4.6 35 71-111 36-70 (77)
133 PF01466 Skp1: Skp1 family, di 27.9 1.7E+02 0.0037 18.7 7.2 47 5-72 16-63 (78)
134 PF03874 RNA_pol_Rpb4: RNA pol 27.6 38 0.00083 23.1 1.4 22 55-76 70-91 (117)
135 PF02954 HTH_8: Bacterial regu 27.0 31 0.00067 19.7 0.7 16 57-72 20-35 (42)
136 PRK12523 RNA polymerase sigma 26.7 61 0.0013 23.1 2.4 30 53-82 133-163 (172)
137 PRK12528 RNA polymerase sigma 26.3 64 0.0014 22.6 2.4 31 52-82 126-157 (161)
138 TIGR02957 SigX4 RNA polymerase 26.2 1.9E+02 0.0042 22.7 5.4 51 53-104 122-173 (281)
139 TIGR00798 mtc tricarboxylate c 26.0 73 0.0016 26.6 3.0 41 51-91 31-77 (318)
140 PRK12518 RNA polymerase sigma 26.0 81 0.0017 22.3 2.9 18 54-71 135-152 (175)
141 PRK12516 RNA polymerase sigma 25.9 91 0.002 22.9 3.3 19 53-71 130-148 (187)
142 PRK12525 RNA polymerase sigma 25.4 79 0.0017 22.5 2.8 31 53-83 132-163 (168)
143 PRK10188 DNA-binding transcrip 25.3 61 0.0013 25.2 2.3 34 53-86 192-226 (240)
144 PRK09415 RNA polymerase factor 24.6 83 0.0018 22.7 2.8 17 54-70 142-158 (179)
145 PRK09652 RNA polymerase sigma 24.6 60 0.0013 22.7 2.0 16 55-70 144-159 (182)
146 PF13411 MerR_1: MerR HTH fami 24.4 31 0.00068 20.9 0.5 30 56-90 1-30 (69)
147 PRK09644 RNA polymerase sigma 24.4 72 0.0016 22.5 2.4 21 96-116 141-161 (165)
148 PF08951 EntA_Immun: Enterocin 24.3 1.1E+02 0.0024 18.7 3.0 33 74-108 5-37 (75)
149 cd00006 PTS_IIA_man PTS_IIA, P 24.0 1.4E+02 0.0029 20.5 3.7 35 62-96 29-73 (122)
150 PF00325 Crp: Bacterial regula 23.9 49 0.0011 18.4 1.1 17 55-71 2-18 (32)
151 TIGR02983 SigE-fam_strep RNA p 23.9 1E+02 0.0022 21.5 3.1 19 53-71 124-142 (162)
152 PRK12515 RNA polymerase sigma 23.7 1.1E+02 0.0023 22.2 3.3 18 96-113 164-181 (189)
153 PRK08570 rpl19e 50S ribosomal 23.5 1.2E+02 0.0026 22.8 3.5 33 72-104 38-70 (150)
154 PF04355 SmpA_OmlA: SmpA / Oml 23.5 62 0.0013 20.1 1.7 19 51-69 11-29 (71)
155 cd00481 Ribosomal_L19e Ribosom 23.5 1.2E+02 0.0027 22.6 3.5 34 71-104 34-67 (145)
156 PRK09047 RNA polymerase factor 23.2 79 0.0017 21.9 2.4 19 53-71 120-138 (161)
157 TIGR02999 Sig-70_X6 RNA polyme 23.2 78 0.0017 22.6 2.4 16 55-70 150-165 (183)
158 PRK08301 sporulation sigma fac 23.2 80 0.0017 23.9 2.6 19 53-71 196-214 (234)
159 PRK12530 RNA polymerase sigma 22.9 78 0.0017 23.1 2.4 19 53-71 148-166 (189)
160 PRK04217 hypothetical protein; 22.9 1E+02 0.0022 21.7 2.9 20 53-72 56-75 (110)
161 PF03374 ANT: Phage antirepres 22.4 30 0.00064 23.4 0.0 32 53-84 22-53 (111)
162 PF04719 TAFII28: hTAFII28-lik 22.3 83 0.0018 21.5 2.2 12 71-82 79-90 (90)
163 COG4977 Transcriptional regula 22.3 1.9E+02 0.0042 24.1 4.8 50 53-109 234-283 (328)
164 PF12523 DUF3725: Protein of u 22.0 68 0.0015 21.3 1.7 22 5-26 13-34 (74)
165 PRK12461 UDP-N-acetylglucosami 21.9 83 0.0018 24.9 2.5 17 72-88 205-221 (255)
166 PF00690 Cation_ATPase_N: Cati 21.5 1.9E+02 0.0041 17.7 3.7 33 55-88 3-38 (69)
167 PF05853 DUF849: Prokaryotic p 21.2 51 0.0011 26.4 1.2 15 53-67 258-272 (272)
168 KOG2070|consensus 21.1 1.5E+02 0.0032 26.9 4.1 18 75-92 246-263 (661)
169 CHL00027 rps15 ribosomal prote 20.9 1.9E+02 0.0041 19.8 3.8 29 84-113 41-69 (90)
170 PF13950 Epimerase_Csub: UDP-g 20.8 1.9E+02 0.0042 17.9 3.6 32 56-89 27-60 (62)
171 PRK12520 RNA polymerase sigma 20.8 60 0.0013 23.6 1.4 16 55-70 147-162 (191)
172 PF11469 Ribonucleas_3_2: Ribo 20.7 1.6E+02 0.0034 21.2 3.5 33 52-84 71-111 (120)
173 PRK07500 rpoH2 RNA polymerase 20.7 1.1E+02 0.0025 24.4 3.1 36 54-89 244-283 (289)
174 cd06171 Sigma70_r4 Sigma70, re 20.1 99 0.0022 16.6 2.0 20 53-72 24-43 (55)
175 PRK14981 DNA-directed RNA poly 20.0 1.7E+02 0.0038 20.3 3.6 29 54-82 63-91 (112)
No 1
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=100.00 E-value=1.5e-37 Score=225.28 Aligned_cols=114 Identities=53% Similarity=0.747 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCCCHHHHHHHcCCCCC-CHHHHHHHHH
Q psy9282 2 AKYIIQIAVLGAQVVGRAFAKALRQEYAASQEAAKRAGGGRQGTAQASENLRTGMTLDEARDILDIKQL-DPKEIKQRYE 80 (120)
Q Consensus 2 ariia~l~v~g~~~~gra~~~A~rqa~~~~~~a~~~~~~~~~~~~~~~~~~~~~Ms~~EA~~ILgv~~~-~~~~Ik~~yr 80 (120)
.|||+||+|+|+++|||||++||||++.+++.++..... ++.........++||++||++||||++. ++++|.++|+
T Consensus 3 ~riiaqiiv~G~~vvgRAf~~AyrQA~aa~~~a~~a~~~--a~~~~~a~~~~~~Mtl~EA~~ILnv~~~~~~eeI~k~y~ 80 (127)
T PF03656_consen 3 KRIIAQIIVTGGQVVGRAFTQAYRQAAAAAQAAAGAGQN--ASARGAAASNSKGMTLDEARQILNVKEELSREEIQKRYK 80 (127)
T ss_dssp --------------------------------------------------------HHHHHHHHT--G--SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccchhHHhhcCCCCHHHHHHHcCCCCccCHHHHHHHHH
Confidence 467779999999999999999999999765543332111 1112222334458999999999999995 7899999999
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhCC
Q psy9282 81 FLFNANDSSKGGSFYIQSKVVRAKERIDQEVKKVSGD 117 (120)
Q Consensus 81 ~L~~~nhPDkgGS~yl~~ki~~A~e~L~~~~~~~~~~ 117 (120)
+||..|||++||||||||||++|+|||+.|++....+
T Consensus 81 ~Lf~~Nd~~kGGSfYLQSKV~rAKErl~~El~~~~~~ 117 (127)
T PF03656_consen 81 HLFKANDPSKGGSFYLQSKVFRAKERLEQELKEEEKE 117 (127)
T ss_dssp HHHHHT-CCCTS-HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHhccCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999876543
No 2
>KOG3442|consensus
Probab=100.00 E-value=4.2e-36 Score=216.23 Aligned_cols=112 Identities=57% Similarity=0.878 Sum_probs=100.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCCCHHHHHHHcCCCCC-CHHHHHHHH
Q psy9282 1 MAKYIIQIAVLGAQVVGRAFAKALRQEYAASQEAAKRAGGGRQGTAQASENLRTGMTLDEARDILDIKQL-DPKEIKQRY 79 (120)
Q Consensus 1 ~ariia~l~v~g~~~~gra~~~A~rqa~~~~~~a~~~~~~~~~~~~~~~~~~~~~Ms~~EA~~ILgv~~~-~~~~Ik~~y 79 (120)
|+|++++|||+|++++||||++||||++++++.++...+.+..|+.........+||++||++||||++. ++++|.++|
T Consensus 1 ~~R~~aqiIi~G~qvvgrAf~~A~RQeia~s~~aa~~~~a~k~g~~~~~~~~~~~iTlqEa~qILnV~~~ln~eei~k~y 80 (132)
T KOG3442|consen 1 MARYLAQIIIMGSQVVGRAFVQAYRQEIAASQQAAARQAAGKSGTRSAEANSNGKITLQEAQQILNVKEPLNREEIEKRY 80 (132)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccccccccccHHHHhhHhCCCCCCCHHHHHHHH
Confidence 7999999999999999999999999999998877665554445555555566677999999999999965 789999999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHh
Q psy9282 80 EFLFNANDSSKGGSFYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 80 r~L~~~nhPDkgGS~yl~~ki~~A~e~L~~~~~ 112 (120)
.+||..|+|.+||||||||||.+|+|+|+.|++
T Consensus 81 ehLFevNdkskGGSFYLQSKVfRAkErld~El~ 113 (132)
T KOG3442|consen 81 EHLFEVNDKSKGGSFYLQSKVFRAKERLDEELK 113 (132)
T ss_pred HHHHhccCcccCcceeehHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998
No 3
>KOG0723|consensus
Probab=99.96 E-value=4.7e-29 Score=175.84 Aligned_cols=99 Identities=26% Similarity=0.275 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCCCCCcccccccccCCCCHHHHHHHcCCCCC-CHHHHHH
Q psy9282 3 KYIIQIAVLGAQVVGRAFAK----ALRQEYAASQEAAKRAGGGRQGTAQASENLRTGMTLDEARDILDIKQL-DPKEIKQ 77 (120)
Q Consensus 3 riia~l~v~g~~~~gra~~~----A~rqa~~~~~~a~~~~~~~~~~~~~~~~~~~~~Ms~~EA~~ILgv~~~-~~~~Ik~ 77 (120)
=|++|++|+++.+.||..++ ++ |+++..+. +....++|.++|+++||+.||.+||||+++ +.+.||+
T Consensus 4 ~i~~G~gvaa~a~ag~~gl~~~~~~~-qa~~~~~~-------~~~~~~~y~GGF~~kMsr~EA~lIL~v~~s~~k~Kike 75 (112)
T KOG0723|consen 4 PIIAGLGVAALAFAGRYGLWMKTLAK-QAFKTLPK-------GPFFGAFYKGGFEPKMSRREAALILGVTPSLDKDKIKE 75 (112)
T ss_pred hHHHhHHHHHHHHhchhhhhchhHHH-HHHHHcCC-------CcchhhhhhcccccccchHHHHHHhCCCccccHHHHHH
Confidence 37899999999999999999 44 44443321 123447899999999999999999999987 5699999
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHH
Q psy9282 78 RYEFLFNANDSSKGGSFYIQSKVVRAKERIDQ 109 (120)
Q Consensus 78 ~yr~L~~~nhPDkgGS~yl~~ki~~A~e~L~~ 109 (120)
+|||+|..||||+|||||+++|||+||++|+.
T Consensus 76 aHrriM~~NHPD~GGSPYlAsKINEAKdlLe~ 107 (112)
T KOG0723|consen 76 AHRRIMLANHPDRGGSPYLASKINEAKDLLEG 107 (112)
T ss_pred HHHHHHHcCCCcCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999975
No 4
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.89 E-value=8.9e-23 Score=146.09 Aligned_cols=103 Identities=21% Similarity=0.192 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC---------CcccccccccCCCCHHHHHHHcCCCCC-C
Q psy9282 2 AKYIIQIAVLGAQVVGRAFAKALRQEYAASQEAAKRAGGGRQ---------GTAQASENLRTGMTLDEARDILDIKQL-D 71 (120)
Q Consensus 2 ariia~l~v~g~~~~gra~~~A~rqa~~~~~~a~~~~~~~~~---------~~~~~~~~~~~~Ms~~EA~~ILgv~~~-~ 71 (120)
+-+++ |.+.++.+++|.++++|++-.+. + .....+.-+ .......+|+..||.+||++||||+++ +
T Consensus 3 ~~~~~-~~~~~~~l~~~~~~~~~~~~~~~-~--~~~~~~~~s~~~~~~~~~~~~~~~~~f~~~Ms~~eAy~ILGv~~~As 78 (116)
T PTZ00100 3 WPIVA-LTFGGGVLAVRYGYRYLKNQKIF-G--SNNMSFPLSGFNPSLGSLFLKNDLKGFENPMSKSEAYKILNISPTAS 78 (116)
T ss_pred chHHH-HHHhHHHHHHHHHHHHHHHHhhc-c--CccccCCchhhhHHHHHHHhccccccccCCCCHHHHHHHcCCCCCCC
Confidence 34455 89999999999999999642211 0 000000000 001224588999999999999999998 5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Q psy9282 72 PKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERID 108 (120)
Q Consensus 72 ~~~Ik~~yr~L~~~nhPDkgGS~yl~~ki~~A~e~L~ 108 (120)
.+||+++||+|+..||||+|||+|++++|++|||+|.
T Consensus 79 ~~eIkkaYRrLa~~~HPDkgGs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 79 KERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence 6999999999999999999999999999999999985
No 5
>PHA03102 Small T antigen; Reviewed
Probab=99.41 E-value=6.2e-13 Score=99.24 Aligned_cols=59 Identities=15% Similarity=0.148 Sum_probs=53.6
Q ss_pred CHHHHHHHcCCCCCC---HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhh
Q psy9282 57 TLDEARDILDIKQLD---PKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEVKKVS 115 (120)
Q Consensus 57 s~~EA~~ILgv~~~~---~~~Ik~~yr~L~~~nhPDkgGS~yl~~ki~~A~e~L~~~~~~~~ 115 (120)
..+|++.||||+++. .++|+++||++.+.+|||+||++..+++||+||++|.+......
T Consensus 3 e~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r~~ 64 (153)
T PHA03102 3 ESKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSLR 64 (153)
T ss_pred hHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHhcc
Confidence 467999999999874 59999999999999999999999999999999999998877644
No 6
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.23 E-value=2.1e-11 Score=74.22 Aligned_cols=48 Identities=23% Similarity=0.158 Sum_probs=43.5
Q ss_pred HHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC----CHHHHHHHHHHHHHHH
Q psy9282 61 ARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG----SFYIQSKVVRAKERID 108 (120)
Q Consensus 61 A~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG----S~yl~~ki~~A~e~L~ 108 (120)
.++||||++. +.++|+++|++|++..|||+++ +...+.+|++||++|.
T Consensus 2 ~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~ 54 (55)
T cd06257 2 YYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLS 54 (55)
T ss_pred hHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhc
Confidence 5899999987 6799999999999999999977 4788999999999985
No 7
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.23 E-value=1.6e-11 Score=76.04 Aligned_cols=51 Identities=20% Similarity=0.152 Sum_probs=45.5
Q ss_pred HHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC-----CHHHHHHHHHHHHHHHHH
Q psy9282 60 EARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG-----SFYIQSKVVRAKERIDQE 110 (120)
Q Consensus 60 EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG-----S~yl~~ki~~A~e~L~~~ 110 (120)
+.++||||++. +.++|+++|++|++..|||+++ +...+.+|++||++|.+.
T Consensus 2 ~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~ 58 (60)
T smart00271 2 DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDP 58 (60)
T ss_pred CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCC
Confidence 46899999988 5699999999999999999987 568999999999999753
No 8
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.22 E-value=6.8e-11 Score=74.49 Aligned_cols=54 Identities=20% Similarity=0.254 Sum_probs=48.1
Q ss_pred HHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCC-CCCH----HHHHHHHHHHHHHHHHHhh
Q psy9282 60 EARDILDIKQL-DPKEIKQRYEFLFNANDSSK-GGSF----YIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 60 EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDk-gGS~----yl~~ki~~A~e~L~~~~~~ 113 (120)
+.++||||++. +.++|+++|++|+...|||+ ++++ ..+.+|++||++|....+.
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R 60 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERR 60 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHH
Confidence 46899999998 56999999999999999999 6777 8999999999999877654
No 9
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.16 E-value=8.6e-11 Score=99.31 Aligned_cols=62 Identities=21% Similarity=0.284 Sum_probs=54.6
Q ss_pred ccCCCCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhh
Q psy9282 52 LRTGMTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 52 ~~~~Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS~yl~~ki~~A~e~L~~~~~~ 113 (120)
....|.....|+||||+++ +.+|||++||+|.++.|||+++++..+.+|++||++|.+..+.
T Consensus 21 ~~~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR 83 (421)
T PTZ00037 21 RKREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKR 83 (421)
T ss_pred ccccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHH
Confidence 3455777899999999998 5799999999999999999999999999999999999765543
No 10
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.16 E-value=1.1e-10 Score=93.40 Aligned_cols=58 Identities=28% Similarity=0.376 Sum_probs=50.4
Q ss_pred CCCCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCC----CCCH-------HHHHHHHHHHHHHHHHH
Q psy9282 54 TGMTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSK----GGSF-------YIQSKVVRAKERIDQEV 111 (120)
Q Consensus 54 ~~Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDk----gGS~-------yl~~ki~~A~e~L~~~~ 111 (120)
..|+.++||+||||+++ +.++||++||+|+..+|||+ |.++ ..+++|++|||+|.++.
T Consensus 195 ~~~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~r 264 (267)
T PRK09430 195 RGPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQK 264 (267)
T ss_pred CCCcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 46999999999999998 67999999999999999999 2233 47888999999998764
No 11
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=2.3e-10 Score=95.64 Aligned_cols=58 Identities=19% Similarity=0.205 Sum_probs=48.6
Q ss_pred CCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC-C---HHHHHHHHHHHHHHHHHHhh
Q psy9282 56 MTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG-S---FYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 56 Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG-S---~yl~~ki~~A~e~L~~~~~~ 113 (120)
|...+-|+||||+.+ +.+|||++||+|.++.|||+.- + ...+.+|++|||+|.+.-+.
T Consensus 1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKR 63 (371)
T COG0484 1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKR 63 (371)
T ss_pred CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHH
Confidence 344566999999998 6799999999999999999944 4 57788899999999876554
No 12
>PHA02624 large T antigen; Provisional
Probab=98.98 E-value=1.1e-09 Score=96.48 Aligned_cols=56 Identities=16% Similarity=0.191 Sum_probs=51.2
Q ss_pred HHHHHHHcCCCCCC---HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhh
Q psy9282 58 LDEARDILDIKQLD---PKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 58 ~~EA~~ILgv~~~~---~~~Ik~~yr~L~~~nhPDkgGS~yl~~ki~~A~e~L~~~~~~ 113 (120)
.+|++++|||+++. .++|+++||+|.+..|||+||++..+++|++||++|.++.+.
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d~~k~ 68 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEGVKS 68 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhcHHHh
Confidence 46799999999875 599999999999999999999999999999999999886664
No 13
>PRK14296 chaperone protein DnaJ; Provisional
Probab=98.89 E-value=2e-09 Score=89.44 Aligned_cols=58 Identities=16% Similarity=0.217 Sum_probs=48.8
Q ss_pred CCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCC---CCHHHHHHHHHHHHHHHHHHhh
Q psy9282 56 MTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKG---GSFYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 56 Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkg---GS~yl~~ki~~A~e~L~~~~~~ 113 (120)
|+....|+||||+++ +.+||+++||+|.++.|||+. +....+.+|++|||+|.++-+.
T Consensus 1 m~~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR 62 (372)
T PRK14296 1 MKKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKR 62 (372)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHh
Confidence 444577999999998 569999999999999999985 3457888999999999876544
No 14
>PRK14299 chaperone protein DnaJ; Provisional
Probab=98.89 E-value=2.6e-09 Score=85.99 Aligned_cols=57 Identities=18% Similarity=0.144 Sum_probs=48.1
Q ss_pred CCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHHHHHHh
Q psy9282 56 MTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGS---FYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 56 Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS---~yl~~ki~~A~e~L~~~~~ 112 (120)
|+....+.||||+++ +.+||+++||+|.+..|||+..+ ...+..|++||++|.+..+
T Consensus 1 m~~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~k 61 (291)
T PRK14299 1 MAYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEK 61 (291)
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHH
Confidence 445678999999998 56999999999999999999754 4677889999999976543
No 15
>KOG0721|consensus
Probab=98.87 E-value=3.9e-09 Score=82.98 Aligned_cols=54 Identities=20% Similarity=0.266 Sum_probs=48.9
Q ss_pred HHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCC----CCCHHHHHHHHHHHHHHHHHHhh
Q psy9282 60 EARDILDIKQL-DPKEIKQRYEFLFNANDSSK----GGSFYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 60 EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDk----gGS~yl~~ki~~A~e~L~~~~~~ 113 (120)
+-++||||++. +..|||++||+|..+.|||| +|+.+-+.+|..||..|.++...
T Consensus 100 DPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sr 158 (230)
T KOG0721|consen 100 DPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSR 158 (230)
T ss_pred CcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhH
Confidence 45899999998 56999999999999999999 89999999999999999876543
No 16
>PRK14288 chaperone protein DnaJ; Provisional
Probab=98.87 E-value=3.3e-09 Score=88.01 Aligned_cols=54 Identities=17% Similarity=0.186 Sum_probs=46.1
Q ss_pred HHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC-C---HHHHHHHHHHHHHHHHHHhh
Q psy9282 60 EARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG-S---FYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 60 EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG-S---~yl~~ki~~A~e~L~~~~~~ 113 (120)
.-|+||||+++ +.+||+++||+|.++.|||+.. + ...+..|++|||+|.+..+.
T Consensus 4 dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR 62 (369)
T PRK14288 4 SYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKR 62 (369)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHH
Confidence 56899999998 5699999999999999999954 3 46788999999999875543
No 17
>PRK14286 chaperone protein DnaJ; Provisional
Probab=98.86 E-value=3.5e-09 Score=87.97 Aligned_cols=58 Identities=22% Similarity=0.193 Sum_probs=48.7
Q ss_pred CCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC-C---HHHHHHHHHHHHHHHHHHhh
Q psy9282 56 MTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG-S---FYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 56 Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG-S---~yl~~ki~~A~e~L~~~~~~ 113 (120)
|+-...|+||||+++ +.+||+++||+|.++.|||+.. + ...+++|++|||+|.+..+.
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR 63 (372)
T PRK14286 1 MSERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKR 63 (372)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHH
Confidence 444578999999998 5699999999999999999954 3 47889999999999765443
No 18
>KOG0713|consensus
Probab=98.86 E-value=5.3e-09 Score=86.36 Aligned_cols=55 Identities=18% Similarity=0.140 Sum_probs=46.9
Q ss_pred HHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCC-CC---HHHHHHHHHHHHHHHHHHh
Q psy9282 58 LDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKG-GS---FYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 58 ~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkg-GS---~yl~~ki~~A~e~L~~~~~ 112 (120)
.+.-|+||||+.+ +..|||++||||..+.||||. ++ ...+.+|+.|||+|.++-+
T Consensus 15 ~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpek 74 (336)
T KOG0713|consen 15 GRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEK 74 (336)
T ss_pred CCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHH
Confidence 3466999999998 569999999999999999994 44 4788999999999977544
No 19
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=98.85 E-value=4.3e-09 Score=85.16 Aligned_cols=58 Identities=24% Similarity=0.245 Sum_probs=49.2
Q ss_pred CCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHHHHHHHHhh
Q psy9282 56 MTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG---SFYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 56 Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG---S~yl~~ki~~A~e~L~~~~~~ 113 (120)
|+....|+||||++. +.+||+++||+|...+|||++. ..-.++.|++||++|.+..+.
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr 62 (306)
T PRK10266 1 MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRR 62 (306)
T ss_pred CCcCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHH
Confidence 445678999999998 5699999999999999999864 567889999999999875543
No 20
>PRK10767 chaperone protein DnaJ; Provisional
Probab=98.84 E-value=4e-09 Score=87.29 Aligned_cols=58 Identities=17% Similarity=0.193 Sum_probs=48.4
Q ss_pred CCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC-CH---HHHHHHHHHHHHHHHHHhh
Q psy9282 56 MTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG-SF---YIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 56 Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG-S~---yl~~ki~~A~e~L~~~~~~ 113 (120)
|+..+.++||||++. +.+||+++||+|.+..|||+.+ ++ ..+.+|++||++|.+..+.
T Consensus 1 ~~~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r 63 (371)
T PRK10767 1 MAKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKR 63 (371)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhh
Confidence 444578999999998 5699999999999999999964 43 5677899999999765543
No 21
>PRK14279 chaperone protein DnaJ; Provisional
Probab=98.84 E-value=4.2e-09 Score=88.08 Aligned_cols=54 Identities=17% Similarity=0.124 Sum_probs=47.0
Q ss_pred HHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC-C---HHHHHHHHHHHHHHHHHHh
Q psy9282 59 DEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG-S---FYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 59 ~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG-S---~yl~~ki~~A~e~L~~~~~ 112 (120)
...|+||||++. +.+|||++||+|.++.|||+.+ + ...+.+|++|||+|.++-+
T Consensus 9 ~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~K 67 (392)
T PRK14279 9 KDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAK 67 (392)
T ss_pred cCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhh
Confidence 578999999998 5699999999999999999954 4 4788899999999987544
No 22
>PRK14287 chaperone protein DnaJ; Provisional
Probab=98.84 E-value=4.2e-09 Score=87.46 Aligned_cols=58 Identities=17% Similarity=0.189 Sum_probs=48.1
Q ss_pred CCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHHHHHHhh
Q psy9282 56 MTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGS---FYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 56 Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS---~yl~~ki~~A~e~L~~~~~~ 113 (120)
|.....++||||++. +.+||+++||+|.+.+|||+..+ ...+.+|++|||+|.+..+.
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR 62 (371)
T PRK14287 1 MSKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKK 62 (371)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHH
Confidence 334578999999998 56999999999999999999643 35788999999999765543
No 23
>PRK14285 chaperone protein DnaJ; Provisional
Probab=98.82 E-value=4.1e-09 Score=87.32 Aligned_cols=54 Identities=20% Similarity=0.185 Sum_probs=46.4
Q ss_pred HHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC-C---HHHHHHHHHHHHHHHHHHh
Q psy9282 59 DEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG-S---FYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 59 ~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG-S---~yl~~ki~~A~e~L~~~~~ 112 (120)
...|+||||+++ +.+||+++||+|.++.|||+.. + ...+.+|++||++|.++.+
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~k 61 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNK 61 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcch
Confidence 467999999998 5699999999999999999964 3 3679999999999987543
No 24
>PRK14294 chaperone protein DnaJ; Provisional
Probab=98.82 E-value=5.7e-09 Score=86.39 Aligned_cols=58 Identities=19% Similarity=0.212 Sum_probs=49.1
Q ss_pred CCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC-C---HHHHHHHHHHHHHHHHHHhh
Q psy9282 56 MTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG-S---FYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 56 Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG-S---~yl~~ki~~A~e~L~~~~~~ 113 (120)
|+..+.++||||+++ +.+||+++||+|.+..|||+.. + ...+++|++||++|.+..+.
T Consensus 1 ~~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r 63 (366)
T PRK14294 1 MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKR 63 (366)
T ss_pred CCCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHH
Confidence 555678999999988 5699999999999999999965 2 36788999999999876543
No 25
>PRK14281 chaperone protein DnaJ; Provisional
Probab=98.81 E-value=8.5e-09 Score=86.29 Aligned_cols=55 Identities=22% Similarity=0.219 Sum_probs=47.2
Q ss_pred HHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHHHHHHhh
Q psy9282 59 DEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGS----FYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 59 ~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS----~yl~~ki~~A~e~L~~~~~~ 113 (120)
.+.|+||||++. +.+||+++||+|.+.+|||+..+ ...+.+|++|||+|.+..+.
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r 62 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKR 62 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhh
Confidence 367999999998 56999999999999999999653 46789999999999876543
No 26
>PRK14280 chaperone protein DnaJ; Provisional
Probab=98.81 E-value=5.4e-09 Score=86.87 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=49.0
Q ss_pred CCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHHHHHHHHhh
Q psy9282 56 MTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG---SFYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 56 Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG---S~yl~~ki~~A~e~L~~~~~~ 113 (120)
|.....++||||+++ +.+||+++||+|.+.+|||+.- ....+.+|++||++|.+..+.
T Consensus 1 ~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr 62 (376)
T PRK14280 1 MAKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKR 62 (376)
T ss_pred CCCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHH
Confidence 444578999999998 5699999999999999999843 457889999999999876553
No 27
>PRK14278 chaperone protein DnaJ; Provisional
Probab=98.81 E-value=6e-09 Score=86.71 Aligned_cols=54 Identities=17% Similarity=0.132 Sum_probs=46.5
Q ss_pred HHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCCHH---HHHHHHHHHHHHHHHHhh
Q psy9282 60 EARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGSFY---IQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 60 EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS~y---l~~ki~~A~e~L~~~~~~ 113 (120)
+-|+||||+++ +.+||+++||+|.++.|||+.+++. .+.+|++|||+|.+..+.
T Consensus 4 d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r 61 (378)
T PRK14278 4 DYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKR 61 (378)
T ss_pred CcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhh
Confidence 56899999988 5699999999999999999987754 678899999999765543
No 28
>PRK14283 chaperone protein DnaJ; Provisional
Probab=98.78 E-value=8.9e-09 Score=85.55 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=48.0
Q ss_pred HHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCC---CCHHHHHHHHHHHHHHHHHHhh
Q psy9282 59 DEARDILDIKQL-DPKEIKQRYEFLFNANDSSKG---GSFYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 59 ~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkg---GS~yl~~ki~~A~e~L~~~~~~ 113 (120)
...|+||||+++ +.+||+++||+|.++.|||+. ++...+.+|++|||+|.++.+.
T Consensus 5 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR 63 (378)
T PRK14283 5 RDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKR 63 (378)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHH
Confidence 467999999998 569999999999999999995 4567899999999999886654
No 29
>PRK14300 chaperone protein DnaJ; Provisional
Probab=98.77 E-value=1.4e-08 Score=84.23 Aligned_cols=55 Identities=15% Similarity=0.182 Sum_probs=47.1
Q ss_pred HHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHHHHHHhh
Q psy9282 59 DEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGS---FYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 59 ~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS---~yl~~ki~~A~e~L~~~~~~ 113 (120)
...++||||++. +.+||+++||+|.+.+|||+..+ ...+++|++||++|.+..+.
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r 61 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKR 61 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHh
Confidence 367999999998 56999999999999999998543 46789999999999876644
No 30
>PRK14282 chaperone protein DnaJ; Provisional
Probab=98.77 E-value=9.5e-09 Score=85.13 Aligned_cols=58 Identities=17% Similarity=0.189 Sum_probs=48.0
Q ss_pred CCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC-C----HHHHHHHHHHHHHHHHHHhh
Q psy9282 56 MTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG-S----FYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 56 Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG-S----~yl~~ki~~A~e~L~~~~~~ 113 (120)
|...+.|+||||++. +.+||+++||+|.++.|||+.. . ...+.+|++|||+|.+..+.
T Consensus 1 ~~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR 64 (369)
T PRK14282 1 REKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKR 64 (369)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhH
Confidence 334578999999998 5699999999999999999953 2 46888999999999775543
No 31
>PRK14301 chaperone protein DnaJ; Provisional
Probab=98.76 E-value=1.1e-08 Score=85.03 Aligned_cols=58 Identities=17% Similarity=0.186 Sum_probs=48.6
Q ss_pred CCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC-CH---HHHHHHHHHHHHHHHHHhh
Q psy9282 56 MTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG-SF---YIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 56 Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG-S~---yl~~ki~~A~e~L~~~~~~ 113 (120)
|+....++||||+++ +.++|+++||+|.+..|||+.. ++ ..+++|++|||+|.+..+.
T Consensus 1 ~~~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr 63 (373)
T PRK14301 1 MSQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKR 63 (373)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhh
Confidence 344578999999988 5699999999999999999954 33 4788999999999886654
No 32
>PRK14276 chaperone protein DnaJ; Provisional
Probab=98.74 E-value=1.5e-08 Score=84.35 Aligned_cols=56 Identities=21% Similarity=0.143 Sum_probs=47.5
Q ss_pred CHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHHHHHHHHh
Q psy9282 57 TLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG---SFYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 57 s~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG---S~yl~~ki~~A~e~L~~~~~ 112 (120)
+....|+||||++. +.+||+++||+|.+.+|||+.. ....+..|++|||+|.+..+
T Consensus 2 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~k 61 (380)
T PRK14276 2 NNTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQK 61 (380)
T ss_pred CCCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhh
Confidence 33468999999998 5699999999999999999854 35788999999999977554
No 33
>PRK14298 chaperone protein DnaJ; Provisional
Probab=98.72 E-value=1.5e-08 Score=84.44 Aligned_cols=55 Identities=16% Similarity=0.159 Sum_probs=47.1
Q ss_pred HHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHHHHHHhh
Q psy9282 59 DEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGS---FYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 59 ~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS---~yl~~ki~~A~e~L~~~~~~ 113 (120)
.+.++||||++. +.+||+++||+|.+..|||+..+ ...+..|++|||+|.+..+.
T Consensus 5 ~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR 63 (377)
T PRK14298 5 RDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKR 63 (377)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhh
Confidence 478999999998 56999999999999999999643 36778999999999886543
No 34
>PRK14295 chaperone protein DnaJ; Provisional
Probab=98.71 E-value=1.8e-08 Score=84.15 Aligned_cols=54 Identities=17% Similarity=0.165 Sum_probs=46.4
Q ss_pred HHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC-C---HHHHHHHHHHHHHHHHHHh
Q psy9282 59 DEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG-S---FYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 59 ~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG-S---~yl~~ki~~A~e~L~~~~~ 112 (120)
...|+||||+++ +.+||+++||+|.+..|||+.. + ...++.|++||++|.+..+
T Consensus 9 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~ 67 (389)
T PRK14295 9 KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKK 67 (389)
T ss_pred cCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhh
Confidence 578999999998 5699999999999999999953 3 3688899999999976543
No 35
>PRK14297 chaperone protein DnaJ; Provisional
Probab=98.70 E-value=1.9e-08 Score=83.64 Aligned_cols=55 Identities=16% Similarity=0.160 Sum_probs=47.0
Q ss_pred HHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC-C---HHHHHHHHHHHHHHHHHHhh
Q psy9282 59 DEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG-S---FYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 59 ~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG-S---~yl~~ki~~A~e~L~~~~~~ 113 (120)
...|+||||++. +.++|+++||+|.+..|||+.. + ...++.|++||++|.+..+.
T Consensus 4 ~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r 63 (380)
T PRK14297 4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKK 63 (380)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhh
Confidence 478999999998 5699999999999999999954 3 36788999999999886544
No 36
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=98.69 E-value=3.5e-08 Score=81.08 Aligned_cols=53 Identities=19% Similarity=0.195 Sum_probs=45.6
Q ss_pred HHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHHHHHHhh
Q psy9282 61 ARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGS---FYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 61 A~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS---~yl~~ki~~A~e~L~~~~~~ 113 (120)
-|+||||++. +.++|+++||+|.+..|||++.+ ...+++|++||++|.+..+.
T Consensus 2 ~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R 58 (354)
T TIGR02349 2 YYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKR 58 (354)
T ss_pred hHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHH
Confidence 3789999988 56999999999999999999753 46788999999999886644
No 37
>PRK14277 chaperone protein DnaJ; Provisional
Probab=98.69 E-value=2e-08 Score=83.68 Aligned_cols=55 Identities=18% Similarity=0.187 Sum_probs=46.6
Q ss_pred HHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC-C---HHHHHHHHHHHHHHHHHHhh
Q psy9282 59 DEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG-S---FYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 59 ~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG-S---~yl~~ki~~A~e~L~~~~~~ 113 (120)
.+.++||||+++ +.+||+++||+|.+..|||+.. + ...+.+|++|||+|.+..+.
T Consensus 5 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr 64 (386)
T PRK14277 5 KDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKR 64 (386)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHH
Confidence 478999999998 5699999999999999999954 3 35788999999999865443
No 38
>PRK14291 chaperone protein DnaJ; Provisional
Probab=98.65 E-value=5.8e-08 Score=80.88 Aligned_cols=54 Identities=17% Similarity=0.164 Sum_probs=46.5
Q ss_pred HHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHHHHHHhh
Q psy9282 60 EARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGS---FYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 60 EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS---~yl~~ki~~A~e~L~~~~~~ 113 (120)
.-|+||||++. +.++|+++||+|.+..|||+..+ ...+..|++||++|.+..+.
T Consensus 4 d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR 61 (382)
T PRK14291 4 DYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKR 61 (382)
T ss_pred CHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHH
Confidence 56899999998 56999999999999999999643 57789999999999876543
No 39
>PRK14292 chaperone protein DnaJ; Provisional
Probab=98.65 E-value=5.3e-08 Score=80.62 Aligned_cols=53 Identities=15% Similarity=0.170 Sum_probs=46.0
Q ss_pred HHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHHHHHHh
Q psy9282 60 EARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGS---FYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 60 EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS---~yl~~ki~~A~e~L~~~~~ 112 (120)
..++||||++. +.++|+++||+|.+..|||+.++ ...+..|++||++|.+..+
T Consensus 3 d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~ 59 (371)
T PRK14292 3 DYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEK 59 (371)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhh
Confidence 46899999998 56999999999999999999865 4677889999999987554
No 40
>PRK14290 chaperone protein DnaJ; Provisional
Probab=98.59 E-value=7.9e-08 Score=79.57 Aligned_cols=54 Identities=15% Similarity=0.131 Sum_probs=46.2
Q ss_pred HHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCC-----HHHHHHHHHHHHHHHHHHhh
Q psy9282 60 EARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGS-----FYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 60 EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS-----~yl~~ki~~A~e~L~~~~~~ 113 (120)
.-|+||||+++ +.+||+++||+|.++.|||+... ...+++|++||++|.+..+.
T Consensus 4 d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r 63 (365)
T PRK14290 4 DYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKR 63 (365)
T ss_pred ChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhh
Confidence 56899999998 56999999999999999999542 26778899999999886654
No 41
>KOG0715|consensus
Probab=98.58 E-value=8.3e-08 Score=77.72 Aligned_cols=62 Identities=15% Similarity=0.132 Sum_probs=53.4
Q ss_pred CCCCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCC---CCCHHHHHHHHHHHHHHHHHHhhhh
Q psy9282 54 TGMTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSK---GGSFYIQSKVVRAKERIDQEVKKVS 115 (120)
Q Consensus 54 ~~Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDk---gGS~yl~~ki~~A~e~L~~~~~~~~ 115 (120)
..|+.+..++||||+++ +..|||++|++|.+..|||. .+..-.+++|.+|||+|.++.+...
T Consensus 38 ~~~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~ 103 (288)
T KOG0715|consen 38 RIISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQE 103 (288)
T ss_pred ccCCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHH
Confidence 34555689999999998 56999999999999999997 4667899999999999988777654
No 42
>PRK14284 chaperone protein DnaJ; Provisional
Probab=98.58 E-value=8.5e-08 Score=80.11 Aligned_cols=53 Identities=25% Similarity=0.243 Sum_probs=45.1
Q ss_pred HHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHHHHHHh
Q psy9282 60 EARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGS----FYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 60 EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS----~yl~~ki~~A~e~L~~~~~ 112 (120)
.-|+||||+++ +++||+++||+|.+..|||+..+ ...+++|++||++|.+..+
T Consensus 2 d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~k 59 (391)
T PRK14284 2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQK 59 (391)
T ss_pred CHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHH
Confidence 35899999998 67999999999999999999542 4678899999999986543
No 43
>PRK14289 chaperone protein DnaJ; Provisional
Probab=98.57 E-value=9.2e-08 Score=79.63 Aligned_cols=56 Identities=16% Similarity=0.159 Sum_probs=47.3
Q ss_pred HHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCC-CC---HHHHHHHHHHHHHHHHHHhh
Q psy9282 58 LDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKG-GS---FYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 58 ~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkg-GS---~yl~~ki~~A~e~L~~~~~~ 113 (120)
....|++|||++. +.+||+++||+|.+..|||+. ++ ...+++|++||++|.+..+.
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R 64 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKR 64 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHH
Confidence 3578999999998 569999999999999999995 34 36788999999999876543
No 44
>KOG1789|consensus
Probab=98.56 E-value=2.5e-07 Score=86.13 Aligned_cols=74 Identities=23% Similarity=0.280 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCCCHHHHHHHcCCCCC-----CHHHHHHHHHHHHHhcCCCC
Q psy9282 16 VGRAFAKALRQEYAASQEAAKRAGGGRQGTAQASENLRTGMTLDEARDILDIKQL-----DPKEIKQRYEFLFNANDSSK 90 (120)
Q Consensus 16 ~gra~~~A~rqa~~~~~~a~~~~~~~~~~~~~~~~~~~~~Ms~~EA~~ILgv~~~-----~~~~Ik~~yr~L~~~nhPDk 90 (120)
+.|..+.+|+.++...+ ..||.+|||+||+++-. .+++|+++|+||..+.||||
T Consensus 1259 fL~~~L~~W~~ElekKP---------------------~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDK 1317 (2235)
T KOG1789|consen 1259 FLRCCLATWYNELEKKP---------------------ATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDK 1317 (2235)
T ss_pred HHHHHHHHHHHHHhcCC---------------------CccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCC
Confidence 45778888987764321 34999999999999864 35999999999999999999
Q ss_pred CC-CHHHHHHHHHHHHHHHHH
Q psy9282 91 GG-SFYIQSKVVRAKERIDQE 110 (120)
Q Consensus 91 gG-S~yl~~ki~~A~e~L~~~ 110 (120)
.- -...+.+||.|||+|..+
T Consensus 1318 NPEGRemFe~VnKAYE~L~~~ 1338 (2235)
T KOG1789|consen 1318 NPEGREMFERVNKAYELLSSE 1338 (2235)
T ss_pred CchHHHHHHHHHHHHHHHHHH
Confidence 53 357889999999999843
No 45
>PRK14293 chaperone protein DnaJ; Provisional
Probab=98.53 E-value=1.5e-07 Score=78.11 Aligned_cols=54 Identities=19% Similarity=0.201 Sum_probs=46.7
Q ss_pred HHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHHHHHHHHhh
Q psy9282 60 EARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG---SFYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 60 EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG---S~yl~~ki~~A~e~L~~~~~~ 113 (120)
..++||||++. +.++|+++||+|.+..|||+.. ..-.++.|++||++|.++.+.
T Consensus 4 d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R 61 (374)
T PRK14293 4 DYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETR 61 (374)
T ss_pred ChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHH
Confidence 56999999988 5799999999999999999853 457889999999999876654
No 46
>KOG0712|consensus
Probab=98.52 E-value=1.2e-07 Score=78.54 Aligned_cols=48 Identities=23% Similarity=0.193 Sum_probs=43.4
Q ss_pred HHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHHHHH
Q psy9282 62 RDILDIKQL-DPKEIKQRYEFLFNANDSSKGG-SFYIQSKVVRAKERIDQ 109 (120)
Q Consensus 62 ~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG-S~yl~~ki~~A~e~L~~ 109 (120)
+.||||.++ +.+|||++||+|..++||||.. ...-+.+|.+|||+|.+
T Consensus 7 y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd 56 (337)
T KOG0712|consen 7 YDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSD 56 (337)
T ss_pred ceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcC
Confidence 789999998 5699999999999999999954 55889999999999976
No 47
>KOG0716|consensus
Probab=98.46 E-value=3.6e-07 Score=73.87 Aligned_cols=58 Identities=19% Similarity=0.182 Sum_probs=49.0
Q ss_pred CCCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHHHHHHh
Q psy9282 55 GMTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGS----FYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 55 ~Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS----~yl~~ki~~A~e~L~~~~~ 112 (120)
......-+.+||++++ +.++|||+||+|++..|||+.|. +-.+..||.||++|.+-.+
T Consensus 27 ~~~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~k 89 (279)
T KOG0716|consen 27 DVIRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTK 89 (279)
T ss_pred ccchhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhh
Confidence 3446678999999998 56999999999999999999776 4678889999999976544
No 48
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=98.45 E-value=4.2e-07 Score=68.55 Aligned_cols=52 Identities=15% Similarity=0.172 Sum_probs=42.0
Q ss_pred HHHHcCCCCC---CHHHHHHHHHHHHHhcCCCC--CCCHH-------HHHHHHHHHHHHHHHHh
Q psy9282 61 ARDILDIKQL---DPKEIKQRYEFLFNANDSSK--GGSFY-------IQSKVVRAKERIDQEVK 112 (120)
Q Consensus 61 A~~ILgv~~~---~~~~Ik~~yr~L~~~nhPDk--gGS~y-------l~~ki~~A~e~L~~~~~ 112 (120)
-+.+|||++. +..+|+++|++|...+|||+ +.++. ..+.||+||++|...+.
T Consensus 3 yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~ 66 (171)
T PRK05014 3 YFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLK 66 (171)
T ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhH
Confidence 4789999986 56999999999999999999 33332 45679999999976543
No 49
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=5.7e-07 Score=65.49 Aligned_cols=55 Identities=16% Similarity=0.130 Sum_probs=47.0
Q ss_pred HHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC-CH----HHHHHHHHHHHHHHHHHhh
Q psy9282 59 DEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG-SF----YIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 59 ~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG-S~----yl~~ki~~A~e~L~~~~~~ 113 (120)
..-+.||||.+. +.++|+++||+|....|||+.. .+ ..+..|++||++|......
T Consensus 6 ~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r 66 (237)
T COG2214 6 LDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERR 66 (237)
T ss_pred hhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHH
Confidence 457999999987 5699999999999999999944 44 8899999999999775544
No 50
>KOG0718|consensus
Probab=98.39 E-value=6.4e-07 Score=77.18 Aligned_cols=54 Identities=22% Similarity=0.171 Sum_probs=47.8
Q ss_pred HHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCCH-------HHHHHHHHHHHHHHHHHh
Q psy9282 59 DEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGSF-------YIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 59 ~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS~-------yl~~ki~~A~e~L~~~~~ 112 (120)
.|-|.+|||+++ +.|||+++||++....||||--+| ..|++|.+|||+|.+.-+
T Consensus 9 ~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~k 70 (546)
T KOG0718|consen 9 IELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQK 70 (546)
T ss_pred hhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHH
Confidence 478999999998 679999999999999999997764 789999999999977544
No 51
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=98.37 E-value=6.6e-07 Score=80.86 Aligned_cols=53 Identities=19% Similarity=0.275 Sum_probs=45.3
Q ss_pred HHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCCH---HHHHHHHHHHHHHHHHHh
Q psy9282 60 EARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGSF---YIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 60 EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS~---yl~~ki~~A~e~L~~~~~ 112 (120)
..|+||||++. +.++|+++||+|.+..|||+++++ -.+.+|++||++|.+..+
T Consensus 3 DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~K 59 (871)
T TIGR03835 3 DYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKK 59 (871)
T ss_pred ChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHH
Confidence 46899999998 569999999999999999997754 357889999999976544
No 52
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=98.28 E-value=2.1e-06 Score=64.60 Aligned_cols=52 Identities=19% Similarity=0.229 Sum_probs=42.9
Q ss_pred HHHHcCCCCC---CHHHHHHHHHHHHHhcCCCCCCCH-------HHHHHHHHHHHHHHHHHh
Q psy9282 61 ARDILDIKQL---DPKEIKQRYEFLFNANDSSKGGSF-------YIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 61 A~~ILgv~~~---~~~~Ik~~yr~L~~~nhPDkgGS~-------yl~~ki~~A~e~L~~~~~ 112 (120)
-+.+|||++. +..+|+++|++|...+|||+..+. ...+.||+||++|..-+.
T Consensus 4 yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~ 65 (166)
T PRK01356 4 YFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALK 65 (166)
T ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 4789999986 569999999999999999996542 235699999999986553
No 53
>KOG0717|consensus
Probab=98.27 E-value=1.3e-06 Score=75.13 Aligned_cols=51 Identities=20% Similarity=0.160 Sum_probs=45.0
Q ss_pred HHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCC-----HHHHHHHHHHHHHHHH
Q psy9282 59 DEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGS-----FYIQSKVVRAKERIDQ 109 (120)
Q Consensus 59 ~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS-----~yl~~ki~~A~e~L~~ 109 (120)
.--+.||||+.. ++.+|+++||+|....|||+.+. +..|+-|+.||++|.+
T Consensus 8 ~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSd 64 (508)
T KOG0717|consen 8 RCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSD 64 (508)
T ss_pred hHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcC
Confidence 457899999987 57999999999999999999664 5788999999999964
No 54
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=98.24 E-value=1.6e-06 Score=65.83 Aligned_cols=52 Identities=12% Similarity=0.133 Sum_probs=42.6
Q ss_pred HHHHcCCCCC---CHHHHHHHHHHHHHhcCCCCC-C-CH-------HHHHHHHHHHHHHHHHHh
Q psy9282 61 ARDILDIKQL---DPKEIKQRYEFLFNANDSSKG-G-SF-------YIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 61 A~~ILgv~~~---~~~~Ik~~yr~L~~~nhPDkg-G-S~-------yl~~ki~~A~e~L~~~~~ 112 (120)
-+.+||+++. +..+|+++||+|...+|||+- + +. -..+.||+||++|...+.
T Consensus 6 ~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~ 69 (173)
T PRK00294 6 HFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPR 69 (173)
T ss_pred hhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhh
Confidence 4789999987 569999999999999999993 2 22 246789999999987654
No 55
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=98.20 E-value=2.8e-06 Score=64.49 Aligned_cols=54 Identities=9% Similarity=0.132 Sum_probs=43.6
Q ss_pred HHHHHHcCCCCC---CHHHHHHHHHHHHHhcCCCCC--CCH-------HHHHHHHHHHHHHHHHHh
Q psy9282 59 DEARDILDIKQL---DPKEIKQRYEFLFNANDSSKG--GSF-------YIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 59 ~EA~~ILgv~~~---~~~~Ik~~yr~L~~~nhPDkg--GS~-------yl~~ki~~A~e~L~~~~~ 112 (120)
..-+.||||++. ++.+|+++|++|...+|||+- .+. -..+.||.||++|..-+.
T Consensus 6 ~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~ 71 (176)
T PRK03578 6 DDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLK 71 (176)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhh
Confidence 467899999986 579999999999999999993 232 224799999999977554
No 56
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=98.15 E-value=3.3e-06 Score=78.05 Aligned_cols=55 Identities=29% Similarity=0.210 Sum_probs=46.8
Q ss_pred HHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHHHHHHhh
Q psy9282 59 DEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGS---FYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 59 ~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS---~yl~~ki~~A~e~L~~~~~~ 113 (120)
..-+.||||+++ +..+|+++||+|....|||+... .--|++|++||++|.+....
T Consensus 573 ~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kR 631 (1136)
T PTZ00341 573 TLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKK 631 (1136)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHH
Confidence 468999999998 56999999999999999999643 35688999999999775544
No 57
>KOG0719|consensus
Probab=98.11 E-value=5.3e-06 Score=66.29 Aligned_cols=53 Identities=19% Similarity=0.216 Sum_probs=46.5
Q ss_pred HHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCC------CCHHHHHHHHHHHHHHHHHHh
Q psy9282 60 EARDILDIKQL-DPKEIKQRYEFLFNANDSSKG------GSFYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 60 EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkg------GS~yl~~ki~~A~e~L~~~~~ 112 (120)
.-+.||||..+ +..+|+++|++|.+..|||+. -+..-|++++.||.+|.++-+
T Consensus 15 d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeek 74 (264)
T KOG0719|consen 15 DLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEK 74 (264)
T ss_pred CHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 67999999998 679999999999999999996 467889999999999966443
No 58
>KOG0691|consensus
Probab=98.06 E-value=9.8e-06 Score=66.27 Aligned_cols=53 Identities=23% Similarity=0.177 Sum_probs=45.5
Q ss_pred HHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCC-CCCH---HHHHHHHHHHHHHHHHH
Q psy9282 59 DEARDILDIKQL-DPKEIKQRYEFLFNANDSSK-GGSF---YIQSKVVRAKERIDQEV 111 (120)
Q Consensus 59 ~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDk-gGS~---yl~~ki~~A~e~L~~~~ 111 (120)
.|-|.||||++. +..+|+++||......|||| -|+| ..|+++-+||++|.++-
T Consensus 5 ~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~ 62 (296)
T KOG0691|consen 5 TDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEE 62 (296)
T ss_pred chHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHH
Confidence 467999999988 67999999999999999999 4555 67788999999997643
No 59
>KOG0720|consensus
Probab=98.06 E-value=3.8e-06 Score=72.13 Aligned_cols=54 Identities=20% Similarity=0.082 Sum_probs=46.4
Q ss_pred HHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHHHHHHHHh
Q psy9282 59 DEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG---SFYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 59 ~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG---S~yl~~ki~~A~e~L~~~~~ 112 (120)
..|+.+|||+++ +.++||+.||++.+..||||.- -...+.++..|+|+|.+..+
T Consensus 235 ~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~k 292 (490)
T KOG0720|consen 235 LDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVK 292 (490)
T ss_pred CCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhh
Confidence 459999999987 6799999999999999999954 45888999999999965443
No 60
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=97.65 E-value=0.00014 Score=55.17 Aligned_cols=52 Identities=15% Similarity=0.172 Sum_probs=42.5
Q ss_pred HHHHcCCCCC---CHHHHHHHHHHHHHhcCCCC--CCC-------HHHHHHHHHHHHHHHHHHh
Q psy9282 61 ARDILDIKQL---DPKEIKQRYEFLFNANDSSK--GGS-------FYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 61 A~~ILgv~~~---~~~~Ik~~yr~L~~~nhPDk--gGS-------~yl~~ki~~A~e~L~~~~~ 112 (120)
-..+||+++. ++..++++|+.|-...|||+ +.| -...+.||+||.+|.+-+.
T Consensus 4 yF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~ 67 (173)
T PRK01773 4 PFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPIL 67 (173)
T ss_pred hHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHH
Confidence 3679999987 67999999999999999999 333 2356789999999977553
No 61
>KOG0568|consensus
Probab=97.65 E-value=0.00025 Score=57.31 Aligned_cols=59 Identities=15% Similarity=0.177 Sum_probs=48.2
Q ss_pred CCCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHH-HHHHHHhh
Q psy9282 55 GMTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG---SFYIQSKVVRAKE-RIDQEVKK 113 (120)
Q Consensus 55 ~Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG---S~yl~~ki~~A~e-~L~~~~~~ 113 (120)
+--..|.+.||||++. +.++|+.+|..|.+..|||.|. +..-+.+|.+|+. +|.+.+.+
T Consensus 43 ke~~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~~~k 106 (342)
T KOG0568|consen 43 KEKIMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEKFAK 106 (342)
T ss_pred HHHHHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 3456799999999998 5699999999999999999864 5678889999997 55544443
No 62
>KOG0722|consensus
Probab=97.64 E-value=3.2e-05 Score=62.85 Aligned_cols=55 Identities=18% Similarity=0.261 Sum_probs=46.7
Q ss_pred HHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHHHHHHHHh
Q psy9282 58 LDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG---SFYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 58 ~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG---S~yl~~ki~~A~e~L~~~~~ 112 (120)
.+..+.+|||... +..||.++||.|...+|||+.- +.-++.+|..|||+|.++-.
T Consensus 32 ~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~ 90 (329)
T KOG0722|consen 32 AENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNET 90 (329)
T ss_pred chhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhh
Confidence 4679999999987 5699999999999999999933 45789999999999976543
No 63
>KOG0550|consensus
Probab=97.54 E-value=9.3e-05 Score=63.45 Aligned_cols=54 Identities=26% Similarity=0.244 Sum_probs=45.8
Q ss_pred HHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCC-CCC----HHHHHHHHHHHHHHHHHHhh
Q psy9282 60 EARDILDIKQL-DPKEIKQRYEFLFNANDSSK-GGS----FYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 60 EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDk-gGS----~yl~~ki~~A~e~L~~~~~~ 113 (120)
.-++|||+... +..+|+++||++...||||+ .|| .-++..|-+||.+|.+..+.
T Consensus 374 d~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr 433 (486)
T KOG0550|consen 374 DWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKR 433 (486)
T ss_pred hHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHH
Confidence 35789999988 56999999999999999999 667 56788899999999776554
No 64
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=97.49 E-value=0.00017 Score=53.74 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHHhcCCCC--CCC-------HHHHHHHHHHHHHHHHHHh
Q psy9282 71 DPKEIKQRYEFLFNANDSSK--GGS-------FYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 71 ~~~~Ik~~yr~L~~~nhPDk--gGS-------~yl~~ki~~A~e~L~~~~~ 112 (120)
++.+|+++|++|....|||+ +.+ ....+.||+||++|...+.
T Consensus 4 D~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~ 54 (157)
T TIGR00714 4 DTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLM 54 (157)
T ss_pred CHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhh
Confidence 45889999999999999998 322 2567899999999987554
No 65
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=97.48 E-value=0.00015 Score=62.83 Aligned_cols=53 Identities=21% Similarity=0.262 Sum_probs=43.6
Q ss_pred HHHHcCCCCCC-HHHHHHHHHHHHHhcCCCCCCC---------HHHHHHHHHHHHHHHHHHhh
Q psy9282 61 ARDILDIKQLD-PKEIKQRYEFLFNANDSSKGGS---------FYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 61 A~~ILgv~~~~-~~~Ik~~yr~L~~~nhPDkgGS---------~yl~~ki~~A~e~L~~~~~~ 113 (120)
.++|||++.++ ..+||++||+|.++.||||--. ..-...|+.||+.|.++...
T Consensus 100 PyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~r 162 (610)
T COG5407 100 PYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRR 162 (610)
T ss_pred hHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 49999999885 5999999999999999999543 23455699999999887654
No 66
>KOG1150|consensus
Probab=97.40 E-value=0.00032 Score=55.32 Aligned_cols=51 Identities=20% Similarity=0.241 Sum_probs=36.8
Q ss_pred HHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHh
Q psy9282 60 EARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 60 EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS~yl~~ki~~A~e~L~~~~~ 112 (120)
-++.+|.|+|. +.++|+++||+|....|||+.-+. +.+-..|++++...++
T Consensus 54 NpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd--~~rAqkAFdivkKA~k 105 (250)
T KOG1150|consen 54 NPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDD--AERAQKAFDIVKKAYK 105 (250)
T ss_pred ChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCccc--HHHHHHHHHHHHHHHH
Confidence 36888999887 679999999999999999997654 2333344444444433
No 67
>KOG0624|consensus
Probab=97.37 E-value=0.00031 Score=59.70 Aligned_cols=57 Identities=19% Similarity=0.114 Sum_probs=45.3
Q ss_pred CCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCCHH-------HHHHHHHHHHHHHHHHh
Q psy9282 56 MTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGSFY-------IQSKVVRAKERIDQEVK 112 (120)
Q Consensus 56 Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS~y-------l~~ki~~A~e~L~~~~~ 112 (120)
-..+.-++||||..+ +..||.|+||+|...+|||.=-+.. -+--|..|+|+|.++-+
T Consensus 391 s~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~Ek 455 (504)
T KOG0624|consen 391 SGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEK 455 (504)
T ss_pred hccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHH
Confidence 445688999999998 5699999999999999999755544 34448899999976433
No 68
>KOG0714|consensus
Probab=97.33 E-value=0.00021 Score=54.55 Aligned_cols=54 Identities=22% Similarity=0.202 Sum_probs=41.1
Q ss_pred HHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCCH--H---HHHHHHHHHHHHHHHHh
Q psy9282 59 DEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGSF--Y---IQSKVVRAKERIDQEVK 112 (120)
Q Consensus 59 ~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS~--y---l~~ki~~A~e~L~~~~~ 112 (120)
.+.+.||||... +.++|+++|++|.+..|||+.-++ . .+..|.+||++|.+..+
T Consensus 3 ~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~k 62 (306)
T KOG0714|consen 3 KDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKK 62 (306)
T ss_pred ccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHH
Confidence 468999999966 457999999999999999995554 1 23456678887765443
No 69
>PF13446 RPT: A repeated domain in UCH-protein
Probab=96.47 E-value=0.021 Score=35.88 Aligned_cols=33 Identities=30% Similarity=0.377 Sum_probs=28.3
Q ss_pred CCCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCC
Q psy9282 55 GMTLDEARDILDIKQL-DPKEIKQRYEFLFNANDS 88 (120)
Q Consensus 55 ~Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhP 88 (120)
.|+.++|+.+||+++. +.+.|...|+..+. +.|
T Consensus 1 ~~~~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-~~P 34 (62)
T PF13446_consen 1 YMDVEEAYEILGIDEDTDDDFIISAFQSKVN-DDP 34 (62)
T ss_pred CCCHHHHHHHhCcCCCCCHHHHHHHHHHHHH-cCh
Confidence 4999999999999887 55999999999888 445
No 70
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.0086 Score=44.97 Aligned_cols=46 Identities=20% Similarity=0.297 Sum_probs=35.7
Q ss_pred HHHHHHcCCCCCC-HHHHHHHHHHHHHhcCCCC----CCCHHHHHHHHHHH
Q psy9282 59 DEARDILDIKQLD-PKEIKQRYEFLFNANDSSK----GGSFYIQSKVVRAK 104 (120)
Q Consensus 59 ~EA~~ILgv~~~~-~~~Ik~~yr~L~~~nhPDk----gGS~yl~~ki~~A~ 104 (120)
.+++.+||++... ..+|+++|+.++..+|||+ |-....+.++.+.-
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~ 163 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKL 163 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHH
Confidence 6899999999885 5999999999999999998 44444444443333
No 71
>KOG0431|consensus
Probab=96.05 E-value=0.0081 Score=51.74 Aligned_cols=34 Identities=26% Similarity=0.325 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHHHhcCCCC-CCC------HHHHHHHHHHH
Q psy9282 71 DPKEIKQRYEFLFNANDSSK-GGS------FYIQSKVVRAK 104 (120)
Q Consensus 71 ~~~~Ik~~yr~L~~~nhPDk-gGS------~yl~~ki~~A~ 104 (120)
++++|||+|||-....|||| .|. -|++.||+.++
T Consensus 401 tp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l 441 (453)
T KOG0431|consen 401 TPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDAL 441 (453)
T ss_pred CHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHH
Confidence 57999999999999999999 444 47888887766
No 72
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.016 Score=47.94 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=43.9
Q ss_pred HHHHHHcCCCCC----CHHHHHHHHHHHHHhcCCCC---CCC---HHHHHHHHHHHHHHHHHH
Q psy9282 59 DEARDILDIKQL----DPKEIKQRYEFLFNANDSSK---GGS---FYIQSKVVRAKERIDQEV 111 (120)
Q Consensus 59 ~EA~~ILgv~~~----~~~~Ik~~yr~L~~~nhPDk---gGS---~yl~~ki~~A~e~L~~~~ 111 (120)
..-+.+|||+.- ++.+|.++|++-|-..|||+ ||+ ...+.=|..|+|+|.+..
T Consensus 43 ~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~ 105 (379)
T COG5269 43 VDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRK 105 (379)
T ss_pred hhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHH
Confidence 567889999874 57999999999999999998 554 566777899999997643
No 73
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=87.42 E-value=1.8 Score=33.48 Aligned_cols=40 Identities=15% Similarity=0.147 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH-HHHHhhh
Q psy9282 71 DPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERI-DQEVKKV 114 (120)
Q Consensus 71 ~~~~Ik~~yr~L~~~nhPDkgGS~yl~~ki~~A~e~L-~~~~~~~ 114 (120)
+-|||++++.+|...+ +|+.....+|..|||.| ++.++.+
T Consensus 5 SfeEIq~Arn~ll~~y----~gd~~~~~~IEaAYD~ILM~rL~~R 45 (194)
T PF11833_consen 5 SFEEIQAARNRLLAQY----AGDEKSREAIEAAYDAILMERLRQR 45 (194)
T ss_pred CHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4599999999999998 78999999999999764 5555543
No 74
>PF12728 HTH_17: Helix-turn-helix domain
Probab=78.45 E-value=1.2 Score=26.25 Aligned_cols=17 Identities=29% Similarity=0.477 Sum_probs=14.9
Q ss_pred CCHHHHHHHcCCCCCCH
Q psy9282 56 MTLDEARDILDIKQLDP 72 (120)
Q Consensus 56 Ms~~EA~~ILgv~~~~~ 72 (120)
||.+|++++||++..+.
T Consensus 2 lt~~e~a~~l~is~~tv 18 (51)
T PF12728_consen 2 LTVKEAAELLGISRSTV 18 (51)
T ss_pred CCHHHHHHHHCcCHHHH
Confidence 78999999999987764
No 75
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=77.73 E-value=0.84 Score=26.68 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=18.4
Q ss_pred CCCHHHHHHHcCCCCCCHHHHHHHHHH
Q psy9282 55 GMTLDEARDILDIKQLDPKEIKQRYEF 81 (120)
Q Consensus 55 ~Ms~~EA~~ILgv~~~~~~~Ik~~yr~ 81 (120)
++|..|..+.||++..+-..+.++|+.
T Consensus 17 G~s~~~ia~~lgvs~~Tv~~w~kr~~~ 43 (50)
T PF13384_consen 17 GWSIREIAKRLGVSRSTVYRWIKRYRE 43 (50)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHT----
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHccc
Confidence 799999999999999988888888863
No 76
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=74.15 E-value=16 Score=25.89 Aligned_cols=44 Identities=7% Similarity=0.117 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHH-HHHHHHHHHhhhhC
Q psy9282 72 PKEIKQRYEFLFNANDSSK-GGSFYIQSKVVR-AKERIDQEVKKVSG 116 (120)
Q Consensus 72 ~~~Ik~~yr~L~~~nhPDk-gGS~yl~~ki~~-A~e~L~~~~~~~~~ 116 (120)
..+++.+-|..+...|||- +-.|. +++||+ ....|..+++.-.+
T Consensus 8 ~~~l~~aLr~Fy~~VHPDlF~~~P~-~k~~Ne~SLk~Ln~~Ld~l~~ 53 (112)
T PF14687_consen 8 SPDLRSALRPFYFAVHPDLFGQHPE-EKQVNEESLKLLNSYLDSLKK 53 (112)
T ss_pred hHHHHHHHHHHHHHhCCcccccChH-HHHhhHHHHHHHHHHHHHHhc
Confidence 4789999999999999998 44566 777775 44777777765444
No 77
>PF05344 DUF746: Domain of Unknown Function (DUF746); InterPro: IPR008008 This is a short conserved region found in some transposons.
Probab=70.72 E-value=6.9 Score=25.50 Aligned_cols=37 Identities=14% Similarity=0.114 Sum_probs=32.6
Q ss_pred cCCCCHHHHHHHcCCCCCCHHHHHHHHHHHHHhcCCC
Q psy9282 53 RTGMTLDEARDILDIKQLDPKEIKQRYEFLFNANDSS 89 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~~~~~Ik~~yr~L~~~nhPD 89 (120)
...+|..||.+.||+++.+.-+--..||+-....+|.
T Consensus 11 s~~~s~~~Aa~~lG~~~~~v~~wv~~fR~wll~LDPS 47 (65)
T PF05344_consen 11 SQQISVAQAADRLGTDPGTVRRWVRMFRQWLLQLDPS 47 (65)
T ss_pred cccccHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCC
Confidence 3569999999999999988777788899999999993
No 78
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=70.64 E-value=12 Score=26.03 Aligned_cols=35 Identities=17% Similarity=0.318 Sum_probs=26.3
Q ss_pred HHHcCCCCC-CHHHHHHHHHHHHHhcCCCC---------CCCHHH
Q psy9282 62 RDILDIKQL-DPKEIKQRYEFLFNANDSSK---------GGSFYI 96 (120)
Q Consensus 62 ~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDk---------gGS~yl 96 (120)
...+++.+. ++++++++++..+...+++. ||||+-
T Consensus 30 i~~i~~~~~~~~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp~n 74 (116)
T TIGR00824 30 VGAVPFVPGENAETLQEKYNAALADLDTEEEVLFLVDIFGGSPYN 74 (116)
T ss_pred eEEEEcCCCcCHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHH
Confidence 445566654 57899999999999886543 899983
No 79
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=69.63 E-value=2.8 Score=23.54 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=14.8
Q ss_pred CCHHHHHHHcCCCCCCH
Q psy9282 56 MTLDEARDILDIKQLDP 72 (120)
Q Consensus 56 Ms~~EA~~ILgv~~~~~ 72 (120)
||..|+++.||+++.+.
T Consensus 2 lt~~e~a~~lgis~~ti 18 (49)
T TIGR01764 2 LTVEEAAEYLGVSKDTV 18 (49)
T ss_pred CCHHHHHHHHCCCHHHH
Confidence 78999999999987654
No 80
>KOG3192|consensus
Probab=68.94 E-value=13 Score=28.39 Aligned_cols=54 Identities=15% Similarity=0.286 Sum_probs=36.9
Q ss_pred HHHHHHcCCCCC---CHHHHHHHHHHHHHhcCCCCCC-------C--HHHHHHHHHHHHHHHHHHh
Q psy9282 59 DEARDILDIKQL---DPKEIKQRYEFLFNANDSSKGG-------S--FYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 59 ~EA~~ILgv~~~---~~~~Ik~~yr~L~~~nhPDkgG-------S--~yl~~ki~~A~e~L~~~~~ 112 (120)
..-..|+|.+.. .++.+...|.---+..|||+-| + ..--.++|+||+.|.+-+.
T Consensus 8 ~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~ 73 (168)
T KOG3192|consen 8 SRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLA 73 (168)
T ss_pred HHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHH
Confidence 345788888765 3455655777777788888722 1 1234679999999987654
No 81
>PRK09649 RNA polymerase sigma factor SigC; Reviewed
Probab=64.24 E-value=8.1 Score=28.35 Aligned_cols=39 Identities=8% Similarity=0.114 Sum_probs=28.4
Q ss_pred ccCCCCHHHHHHHcCCCCCCH-HHHHHHHHHHHHhcCCCC
Q psy9282 52 LRTGMTLDEARDILDIKQLDP-KEIKQRYEFLFNANDSSK 90 (120)
Q Consensus 52 ~~~~Ms~~EA~~ILgv~~~~~-~~Ik~~yr~L~~~nhPDk 90 (120)
+..+||.+|..++||+++.+- .-+.++-++|-.-++||.
T Consensus 143 ~~~g~s~~EIA~~lgis~~tVk~~l~Rar~~Lr~~~~~~~ 182 (185)
T PRK09649 143 QLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPDD 182 (185)
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCccc
Confidence 345788888888888888764 666667777777667763
No 82
>PF13518 HTH_28: Helix-turn-helix domain
Probab=60.09 E-value=12 Score=21.53 Aligned_cols=28 Identities=18% Similarity=0.185 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHcCCCCCCHHHHHHHHHH
Q psy9282 54 TGMTLDEARDILDIKQLDPKEIKQRYEF 81 (120)
Q Consensus 54 ~~Ms~~EA~~ILgv~~~~~~~Ik~~yr~ 81 (120)
.++|..|+...+||+..+.....++|+.
T Consensus 11 ~g~s~~~~a~~~gis~~tv~~w~~~y~~ 38 (52)
T PF13518_consen 11 EGESVREIAREFGISRSTVYRWIKRYRE 38 (52)
T ss_pred cCCCHHHHHHHHCCCHhHHHHHHHHHHh
Confidence 3469999999999987777888888887
No 83
>PF01710 HTH_Tnp_IS630: Transposase; InterPro: IPR002622 Transposase proteins are necessary for efficient DNA transposition. This entry includes insertion sequences from Synechocystis sp. (strain PCC 6803) three of which are characterised as homologous to bacterial IS5- and IS4- and to several members of the IS630-Tc1-mariner superfamily []. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=58.74 E-value=8.7 Score=26.83 Aligned_cols=40 Identities=10% Similarity=0.087 Sum_probs=26.4
Q ss_pred cCCCCHHHHHHHcCCCCCCHHHHHHHHHHHHHhcCCCCCCC
Q psy9282 53 RTGMTLDEARDILDIKQLDPKEIKQRYEFLFNANDSSKGGS 93 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~~~~~Ik~~yr~L~~~nhPDkgGS 93 (120)
..++|..||++.++|+..+--...+ .++.-...+.++++.
T Consensus 16 ~~g~s~~eaa~~F~VS~~Tv~~W~k-~~~~G~~~~k~r~~~ 55 (119)
T PF01710_consen 16 EKGKSIREAAKRFGVSRNTVYRWLK-RKETGDLEPKPRGRK 55 (119)
T ss_pred HccchHHHHHHHhCcHHHHHHHHHH-hcccccccccccccc
Confidence 3468999999999999887644444 344444555555554
No 84
>PF03820 Mtc: Tricarboxylate carrier; InterPro: IPR004686 The MTC family consists of a limited number of homologues, all from eukaryotes. One member of the family has been functionally characterised as a tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism. The rest of the characterised proteins appear to be sideroflexins involved in iron transport.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016020 membrane
Probab=56.41 E-value=12 Score=30.86 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=32.1
Q ss_pred cccCCCCHHHHHHHcC-----CCCC--CHHHHHHHHHHHHHhcCCCCC
Q psy9282 51 NLRTGMTLDEARDILD-----IKQL--DPKEIKQRYEFLFNANDSSKG 91 (120)
Q Consensus 51 ~~~~~Ms~~EA~~ILg-----v~~~--~~~~Ik~~yr~L~~~nhPDkg 91 (120)
.+.+.-.++||.++|. -.+. +.+|+-++-+..-...|||.|
T Consensus 22 l~~S~~~l~~a~~ll~~~~~g~~~~~~~~~~lw~Ak~l~~Sa~HPDTg 69 (308)
T PF03820_consen 22 LFASEAELEEAKELLEDYRAGKVPPGLTDDELWKAKKLYDSAFHPDTG 69 (308)
T ss_pred hcCCHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHhhcccCCCCC
Confidence 4566678899999993 3222 569999999999999999986
No 85
>cd04762 HTH_MerR-trunc Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins. Proteins in this family mostly have a truncated helix-turn-helix (HTH) MerR-like domain. They lack a portion of the C-terminal region, called Wing 2 and the long dimerization helix that is typically present in MerR-like proteins. These truncated domains are found in response regulator receiver (REC) domain proteins (i.e., CheY), cytosine-C5 specific DNA methylases, IS607 transposase-like proteins, and RacA, a bacterial protein that anchors chromosomes to cell poles.
Probab=56.32 E-value=7.2 Score=21.58 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=14.8
Q ss_pred CCHHHHHHHcCCCCCCH
Q psy9282 56 MTLDEARDILDIKQLDP 72 (120)
Q Consensus 56 Ms~~EA~~ILgv~~~~~ 72 (120)
||..|+++.|||++.+.
T Consensus 1 ~s~~e~a~~lgvs~~tl 17 (49)
T cd04762 1 LTTKEAAELLGVSPSTL 17 (49)
T ss_pred CCHHHHHHHHCcCHHHH
Confidence 68899999999998764
No 86
>KOG3767|consensus
Probab=54.15 E-value=12 Score=31.39 Aligned_cols=42 Identities=17% Similarity=0.161 Sum_probs=32.3
Q ss_pred cccCCCCHHHHHHHcCC------CCC-CHHHHHHHHHHHHHhcCCCCCC
Q psy9282 51 NLRTGMTLDEARDILDI------KQL-DPKEIKQRYEFLFNANDSSKGG 92 (120)
Q Consensus 51 ~~~~~Ms~~EA~~ILgv------~~~-~~~~Ik~~yr~L~~~nhPDkgG 92 (120)
-|.+.-.++||++|+.= .+. +.+++-++-+..-...|||.|-
T Consensus 40 lf~s~~~le~ar~iv~~yk~G~~~p~~t~~~lW~Akkl~dS~~HPDTgE 88 (328)
T KOG3767|consen 40 LFVSEKKLEEARQIVEDYKAGKVPPGLTDDELWKAKKLYDSTFHPDTGE 88 (328)
T ss_pred hhhhHHHHHHHHHHHHhhccCCcCCCCcHHHHHHHHHHHhcccCCCCCC
Confidence 45566778999999963 332 5688888888888999999874
No 87
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=54.12 E-value=20 Score=26.74 Aligned_cols=42 Identities=17% Similarity=0.159 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCC----HH-----HHHHHHHHHHHHHHHHhh
Q psy9282 72 PKEIKQRYEFLFNANDSSKGGS----FY-----IQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 72 ~~~Ik~~yr~L~~~nhPDkgGS----~y-----l~~ki~~A~e~L~~~~~~ 113 (120)
.+.++..|+.+....|||+-++ ++ -+..+|.||..|...+..
T Consensus 17 ~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~r 67 (174)
T COG1076 17 LDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLR 67 (174)
T ss_pred HhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3678899999999999999554 22 234588899888776653
No 88
>smart00421 HTH_LUXR helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon
Probab=52.72 E-value=5.9 Score=22.51 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=20.3
Q ss_pred cCCCCHHHHHHHcCCCCCCH-HHHHHHHHHH
Q psy9282 53 RTGMTLDEARDILDIKQLDP-KEIKQRYEFL 82 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~~~-~~Ik~~yr~L 82 (120)
..+||..|..+.||++..+- ..+.+..++|
T Consensus 16 ~~g~s~~eia~~l~is~~tv~~~~~~~~~kl 46 (58)
T smart00421 16 AEGLTNKEIAERLGISEKTVKTHLSNIMRKL 46 (58)
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 35689999999999977654 3344444444
No 89
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=51.33 E-value=9.6 Score=20.29 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHhcCCC
Q psy9282 73 KEIKQRYEFLFNANDSS 89 (120)
Q Consensus 73 ~~Ik~~yr~L~~~nhPD 89 (120)
+++.+.+++++-.+|||
T Consensus 26 ~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 26 EEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHH----------
T ss_pred HHHHHHHHHHhcccccC
Confidence 77888899999999997
No 90
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=50.92 E-value=12 Score=21.91 Aligned_cols=28 Identities=21% Similarity=0.401 Sum_probs=16.6
Q ss_pred cccCCCCHHHHHHHcCCCCCCH-HHHHHH
Q psy9282 51 NLRTGMTLDEARDILDIKQLDP-KEIKQR 78 (120)
Q Consensus 51 ~~~~~Ms~~EA~~ILgv~~~~~-~~Ik~~ 78 (120)
.+..+||..|..++||+++++- .-+.++
T Consensus 22 ~~~~g~s~~eIa~~l~~s~~~v~~~l~ra 50 (54)
T PF08281_consen 22 RYFQGMSYAEIAEILGISESTVKRRLRRA 50 (54)
T ss_dssp HHTS---HHHHHHHCTS-HHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3567899999999999987643 334333
No 91
>cd04761 HTH_MerR-SF Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily. Helix-turn-helix (HTH) transcription regulator MerR superfamily, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=48.47 E-value=11 Score=21.34 Aligned_cols=17 Identities=12% Similarity=0.153 Sum_probs=14.4
Q ss_pred CCHHHHHHHcCCCCCCH
Q psy9282 56 MTLDEARDILDIKQLDP 72 (120)
Q Consensus 56 Ms~~EA~~ILgv~~~~~ 72 (120)
||..|+.++|||++.+.
T Consensus 1 ~~~~e~a~~~gv~~~tl 17 (49)
T cd04761 1 YTIGELAKLTGVSPSTL 17 (49)
T ss_pred CcHHHHHHHHCcCHHHH
Confidence 78999999999997643
No 92
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=48.30 E-value=16 Score=24.22 Aligned_cols=23 Identities=13% Similarity=0.378 Sum_probs=16.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCC
Q psy9282 66 DIKQLDPKEIKQRYEFLFNANDS 88 (120)
Q Consensus 66 gv~~~~~~~Ik~~yr~L~~~nhP 88 (120)
|+++.+...|+++|+.|+..+.+
T Consensus 27 Gfs~~~i~~l~~ayr~l~~~~~~ 49 (83)
T PF13720_consen 27 GFSKEEISALRRAYRILFRSGLT 49 (83)
T ss_dssp TS-HHHHHHHHHHHHHHHTSSS-
T ss_pred CCCHHHHHHHHHHHHHHHhCCCC
Confidence 44444558899999999987653
No 93
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=46.47 E-value=21 Score=22.04 Aligned_cols=31 Identities=19% Similarity=0.285 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHcCCCCCCH-HHHHHHHHHHHH
Q psy9282 54 TGMTLDEARDILDIKQLDP-KEIKQRYEFLFN 84 (120)
Q Consensus 54 ~~Ms~~EA~~ILgv~~~~~-~~Ik~~yr~L~~ 84 (120)
...|..|-.+.|||++++. +-++++.++++.
T Consensus 22 R~~tl~elA~~lgis~st~~~~LRrae~kli~ 53 (53)
T PF04967_consen 22 RRITLEELAEELGISKSTVSEHLRRAERKLIE 53 (53)
T ss_pred CcCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Confidence 4589999999999999975 889999999873
No 94
>KOG1573|consensus
Probab=46.02 E-value=29 Score=26.93 Aligned_cols=40 Identities=15% Similarity=0.222 Sum_probs=27.9
Q ss_pred cccCCCCHHHHHHHcC--CCCCC----HHHHHHHHHH--HHHhcCCCC
Q psy9282 51 NLRTGMTLDEARDILD--IKQLD----PKEIKQRYEF--LFNANDSSK 90 (120)
Q Consensus 51 ~~~~~Ms~~EA~~ILg--v~~~~----~~~Ik~~yr~--L~~~nhPDk 90 (120)
....+||+-|++..|+ |++++ ...|.-+|.. -+..+|||+
T Consensus 68 f~~~kM~i~ec~ell~~~vDESDPDlDepni~Ha~QtAE~iR~~~Pd~ 115 (204)
T KOG1573|consen 68 FDKMKMTIWECCELLNEVVDESDPDLDEPNIQHALQTAEAIRKDYPDE 115 (204)
T ss_pred cchhheeHHHHHHHHHhhhcccCCCCchHHHHHHHHHHHHHHHhCCCc
Confidence 3456899999999998 55542 3556665553 466789986
No 95
>PF12669 P12: Virus attachment protein p12 family
Probab=45.98 E-value=22 Score=22.31 Aligned_cols=21 Identities=38% Similarity=0.379 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHH--HHHHHHHH
Q psy9282 4 YIIQIAVLGAQVV--GRAFAKAL 24 (120)
Q Consensus 4 iia~l~v~g~~~~--gra~~~A~ 24 (120)
||+.++|++..++ .|.+++..
T Consensus 2 iII~~Ii~~~~~~v~~r~~~k~~ 24 (58)
T PF12669_consen 2 IIIGIIILAAVAYVAIRKFIKDK 24 (58)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555554442 25544443
No 96
>PRK12529 RNA polymerase sigma factor; Provisional
Probab=45.85 E-value=26 Score=25.39 Aligned_cols=33 Identities=27% Similarity=0.272 Sum_probs=25.2
Q ss_pred cCCCCHHHHHHHcCCCCCCH-HHHHHHHHHHHHh
Q psy9282 53 RTGMTLDEARDILDIKQLDP-KEIKQRYEFLFNA 85 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~~~-~~Ik~~yr~L~~~ 85 (120)
..+||.+|...+||++..+- ..+.++.+++...
T Consensus 141 ~~g~s~~EIA~~lgis~~tVk~~l~rAl~~~~~~ 174 (178)
T PRK12529 141 LDGMKQKDIAQALDIALPTVKKYIHQAYVTCLSL 174 (178)
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 45789999999999988764 6677777777655
No 97
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=44.99 E-value=20 Score=20.80 Aligned_cols=20 Identities=30% Similarity=0.424 Sum_probs=15.7
Q ss_pred ccCCCCHHHHHHHcCCCCCC
Q psy9282 52 LRTGMTLDEARDILDIKQLD 71 (120)
Q Consensus 52 ~~~~Ms~~EA~~ILgv~~~~ 71 (120)
+..+||..|....||++..+
T Consensus 17 y~~~~t~~eIa~~lg~s~~~ 36 (50)
T PF04545_consen 17 YFEGLTLEEIAERLGISRST 36 (50)
T ss_dssp HTST-SHHHHHHHHTSCHHH
T ss_pred hcCCCCHHHHHHHHCCcHHH
Confidence 46779999999999997653
No 98
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=44.66 E-value=49 Score=22.07 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=25.9
Q ss_pred HHcCCCCCCH--HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q psy9282 63 DILDIKQLDP--KEIKQRYEFLFNANDSSKGGSFYIQSKVVRAK 104 (120)
Q Consensus 63 ~ILgv~~~~~--~~Ik~~yr~L~~~nhPDkgGS~yl~~ki~~A~ 104 (120)
.--|++|+++ .++-++|..++...+| |++-+..++.+.|
T Consensus 48 ~~~g~~p~s~evq~l~~~~~~~~~~~~~---~~~~~~~~l~~~y 88 (118)
T PF07739_consen 48 MEEGVDPDSPEVQELAERWMELINQFTG---GDPELLRGLAQMY 88 (118)
T ss_dssp HHHT--TT-HHHHHHHHHHHHHHHHSS------HHHHHHHHHHT
T ss_pred HHcCCCcCCHHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHH
Confidence 3347788865 7788888888886665 8999999988888
No 99
>PRK12511 RNA polymerase sigma factor; Provisional
Probab=44.51 E-value=35 Score=25.08 Aligned_cols=39 Identities=15% Similarity=0.222 Sum_probs=26.1
Q ss_pred cCCCCHHHHHHHcCCCCCCH----HHHHHHHHHHHHhcCCCCC
Q psy9282 53 RTGMTLDEARDILDIKQLDP----KEIKQRYEFLFNANDSSKG 91 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~~~----~~Ik~~yr~L~~~nhPDkg 91 (120)
..+||.+|...+||++..+- --.++.-++++..-.|+.|
T Consensus 125 ~eg~s~~EIA~~lgis~~tV~~~l~Rar~~Lr~~~~~~~~~~~ 167 (182)
T PRK12511 125 IEGLSYQEAAAVLGIPIGTLMSRIGRARAALRAFEEGTGPARG 167 (182)
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 45788888888888887742 4445555566666667653
No 100
>COG1510 Predicted transcriptional regulators [Transcription]
Probab=43.99 E-value=1.1e+02 Score=23.55 Aligned_cols=60 Identities=18% Similarity=0.240 Sum_probs=36.9
Q ss_pred ccCCCCHHHHHHHcCCCCCCH----HHHHHHHHHHHHhc-CC-CC-----CCCHHHHHHHHHHHHHHHHHHhh
Q psy9282 52 LRTGMTLDEARDILDIKQLDP----KEIKQRYEFLFNAN-DS-SK-----GGSFYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 52 ~~~~Ms~~EA~~ILgv~~~~~----~~Ik~~yr~L~~~n-hP-Dk-----gGS~yl~~ki~~A~e~L~~~~~~ 113 (120)
...+||++|=..+||++.++. .++... .|+... +| || .-..|.+-..+-+++....+++.
T Consensus 38 s~~Pmtl~Ei~E~lg~Sks~vS~~lkkL~~~--~lV~~~~~~G~Rk~~F~a~~df~~~f~t~f~ek~~ReId~ 108 (177)
T COG1510 38 SRKPLTLDEIAEALGMSKSNVSMGLKKLQDW--NLVKKVFEKGDRKDYFEAEKDFSQIFRTLFEEKWKREIDP 108 (177)
T ss_pred cCCCccHHHHHHHHCCCcchHHHHHHHHHhc--chHHhhhccCcchhhhcccchHHHHHHHHHHHHHHHHhhh
Confidence 367899999999999998742 221111 133333 34 11 12346666777788877777765
No 101
>cd06170 LuxR_C_like C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental
Probab=43.59 E-value=27 Score=19.77 Aligned_cols=19 Identities=37% Similarity=0.387 Sum_probs=15.5
Q ss_pred CCCCHHHHHHHcCCCCCCH
Q psy9282 54 TGMTLDEARDILDIKQLDP 72 (120)
Q Consensus 54 ~~Ms~~EA~~ILgv~~~~~ 72 (120)
.+||..|..+.||++..+-
T Consensus 14 ~~~s~~eia~~l~~s~~tv 32 (57)
T cd06170 14 EGKTNKEIADILGISEKTV 32 (57)
T ss_pred cCCCHHHHHHHHCCCHHHH
Confidence 5689999999999976543
No 102
>PF04512 Baculo_PEP_N: Baculovirus polyhedron envelope protein, PEP, N terminus; InterPro: IPR007600 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=43.12 E-value=19 Score=25.06 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=28.6
Q ss_pred CCHHHHHHHcCCCCCCHHHHHHHHHHHHHhcCC
Q psy9282 56 MTLDEARDILDIKQLDPKEIKQRYEFLFNANDS 88 (120)
Q Consensus 56 Ms~~EA~~ILgv~~~~~~~Ik~~yr~L~~~nhP 88 (120)
.+.+|..+||+++..+...|=..||++....-|
T Consensus 17 vgaDEil~IL~lp~s~l~~iP~~~kk~w~dl~~ 49 (97)
T PF04512_consen 17 VGADEILSILRLPCSALQSIPRSHKKLWKDLEP 49 (97)
T ss_pred ecHHHHHHHhCCCHHHHHHcCHHHHHHHHHhcc
Confidence 467999999999977778898999999988877
No 103
>PF08989 DUF1896: Domain of unknown function (DUF1896); InterPro: IPR015082 This domain is found in a set of hypothetical bacterial proteins. ; PDB: 2APL_A.
Probab=41.76 E-value=34 Score=25.53 Aligned_cols=35 Identities=17% Similarity=0.298 Sum_probs=26.3
Q ss_pred HHHHHHhcCCCCCC-CHHHHHHHHHHHHHHHHHHhh
Q psy9282 79 YEFLFNANDSSKGG-SFYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 79 yr~L~~~nhPDkgG-S~yl~~ki~~A~e~L~~~~~~ 113 (120)
-+..+..+||++-+ ..++..|-..|.+.-.+.+..
T Consensus 15 L~~yL~e~hPe~~~d~~fI~~Rad~Aa~aYe~A~~~ 50 (144)
T PF08989_consen 15 LLSYLRESHPERAGDTEFIEERADMAAEAYEQAVRS 50 (144)
T ss_dssp HHHHHHHH-GGGTT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCchhccchHHHHHHHHHHHHHHHHHHHc
Confidence 35568899999955 579999999998887776553
No 104
>PRK12547 RNA polymerase sigma factor; Provisional
Probab=40.52 E-value=34 Score=24.34 Aligned_cols=35 Identities=11% Similarity=0.086 Sum_probs=17.2
Q ss_pred CCCCHHHHHHHcCCCCCCH-HHHHHHHHHHHHhcCC
Q psy9282 54 TGMTLDEARDILDIKQLDP-KEIKQRYEFLFNANDS 88 (120)
Q Consensus 54 ~~Ms~~EA~~ILgv~~~~~-~~Ik~~yr~L~~~nhP 88 (120)
.+||..|-..+||+++.+. ..+.++-++|-..--|
T Consensus 127 ~g~s~~eIA~~lgis~~tV~~~l~Rar~~Lr~~l~~ 162 (164)
T PRK12547 127 SGFSYEDAAAICGCAVGTIKSRVSRARNRLQELLKV 162 (164)
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 3566666666666665432 3344444444333333
No 105
>PF13551 HTH_29: Winged helix-turn helix
Probab=39.96 E-value=24 Score=23.14 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=22.3
Q ss_pred CCC-CHHHHHHHcCCCCCCHHHHHHHHHH
Q psy9282 54 TGM-TLDEARDILDIKQLDPKEIKQRYEF 81 (120)
Q Consensus 54 ~~M-s~~EA~~ILgv~~~~~~~Ik~~yr~ 81 (120)
.++ |..|+++.||++..+-..+.++|+.
T Consensus 10 ~g~~~~~~ia~~lg~s~~Tv~r~~~~~~~ 38 (112)
T PF13551_consen 10 EGVSTIAEIARRLGISRRTVYRWLKRYRE 38 (112)
T ss_pred cCCCcHHHHHHHHCcCHHHHHHHHHHHHc
Confidence 346 5999999999999887777777764
No 106
>PRK03957 V-type ATP synthase subunit F; Provisional
Probab=39.00 E-value=1.1e+02 Score=20.73 Aligned_cols=17 Identities=35% Similarity=0.292 Sum_probs=10.8
Q ss_pred CCCCCC-----HHHHHHHHHHH
Q psy9282 88 SSKGGS-----FYIQSKVVRAK 104 (120)
Q Consensus 88 PDkgGS-----~yl~~ki~~A~ 104 (120)
|++.|+ .|+.+.|.+|.
T Consensus 73 P~~~g~~~~~~~~i~~~v~rai 94 (100)
T PRK03957 73 PDKSGSIERENDPVKELVRRAI 94 (100)
T ss_pred CCCCCCCccchHHHHHHHHHHh
Confidence 466554 57777777764
No 107
>PTZ00119 40S ribosomal protein S15; Provisional
Probab=35.32 E-value=1.8e+02 Score=24.15 Aligned_cols=74 Identities=12% Similarity=0.066 Sum_probs=45.4
Q ss_pred cccccccCC--CCHHH-HHHHcCCCCCCHHHHHHHHHHH-HHh--cCCCCCCCHHHHHHHHHHH-HHHHHHHhhhhCCCC
Q psy9282 47 QASENLRTG--MTLDE-ARDILDIKQLDPKEIKQRYEFL-FNA--NDSSKGGSFYIQSKVVRAK-ERIDQEVKKVSGDYS 119 (120)
Q Consensus 47 ~~~~~~~~~--Ms~~E-A~~ILgv~~~~~~~Ik~~yr~L-~~~--nhPDkgGS~yl~~ki~~A~-e~L~~~~~~~~~~~~ 119 (120)
.|.+.|... -.++| -..||++.-.+..||.+..++. +.. -||..-||+..|--+--++ .-|.++++....|++
T Consensus 74 gY~~~~~~e~le~~~p~VkRILsLrNAs~kEi~K~rK~eIIkkfqr~~~DTGS~EVQIAiLTeRI~~LTeHLk~hkKD~~ 153 (302)
T PTZ00119 74 GYIGLWQYDDIKHLRKNIINMLHLNCANSKQIHKYKKLCIRRCLQRRPFDTGSAPVQIGCLTEKILNLRAHLILRCKDHP 153 (302)
T ss_pred cceecccccchhhhCHHHHHHhccccCChHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccH
Confidence 355555432 22334 5679999877654444444333 222 2565678999998777776 668888887777655
Q ss_pred C
Q psy9282 120 S 120 (120)
Q Consensus 120 ~ 120 (120)
|
T Consensus 154 S 154 (302)
T PTZ00119 154 K 154 (302)
T ss_pred h
Confidence 3
No 108
>cd00131 PAX Paired Box domain
Probab=35.06 E-value=32 Score=24.44 Aligned_cols=30 Identities=17% Similarity=0.148 Sum_probs=26.3
Q ss_pred cCCCCHHHHHHHcCCCCCCHHHHHHHHHHH
Q psy9282 53 RTGMTLDEARDILDIKQLDPKEIKQRYEFL 82 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~~~~~Ik~~yr~L 82 (120)
..+||..++.+.|||+..+-..+.++|+.-
T Consensus 31 ~~G~s~~~iA~~~~Vs~~tV~r~i~r~~e~ 60 (128)
T cd00131 31 QSGIRPCDISRQLRVSHGCVSKILNRYYET 60 (128)
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 457999999999999999888888888864
No 109
>COG3415 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=33.85 E-value=24 Score=25.90 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=25.0
Q ss_pred cCCCCHHHHHHHcCCCCCCHHHHHHHHHH
Q psy9282 53 RTGMTLDEARDILDIKQLDPKEIKQRYEF 81 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~~~~~Ik~~yr~ 81 (120)
..+||..||.++|||+..|--.-.++|++
T Consensus 19 ~~G~S~re~Ak~~gvs~sTvy~wv~r~~e 47 (138)
T COG3415 19 GEGLSCREAAKRFGVSISTVYRWVRRYRE 47 (138)
T ss_pred HcCccHHHHHHHhCccHHHHHHHHHHhcc
Confidence 45799999999999998887777788886
No 110
>PRK05626 rpsO 30S ribosomal protein S15; Reviewed
Probab=33.83 E-value=1.1e+02 Score=20.81 Aligned_cols=33 Identities=15% Similarity=0.255 Sum_probs=19.4
Q ss_pred CCCCCCCHHHHHHHHHHH-HHHHHHHhhhhCCCC
Q psy9282 87 DSSKGGSFYIQSKVVRAK-ERIDQEVKKVSGDYS 119 (120)
Q Consensus 87 hPDkgGS~yl~~ki~~A~-e~L~~~~~~~~~~~~ 119 (120)
||..-||++.|--+--++ ..|.++++....|++
T Consensus 18 ~~~DTGS~eVQiA~LT~rI~~L~~Hlk~~~KD~~ 51 (89)
T PRK05626 18 HEGDTGSPEVQVALLTERINHLTEHLKEHKKDHH 51 (89)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHcccchh
Confidence 454466777776665555 456666665555543
No 111
>PRK12527 RNA polymerase sigma factor; Reviewed
Probab=33.33 E-value=50 Score=23.12 Aligned_cols=18 Identities=11% Similarity=0.342 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy9282 96 IQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 96 l~~ki~~A~e~L~~~~~~ 113 (120)
+-+++.+|...|.+.+..
T Consensus 138 v~~~l~ra~~~Lr~~l~~ 155 (159)
T PRK12527 138 VEKHIVNAMKHCRVRMRQ 155 (159)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344566666666666553
No 112
>PRK09647 RNA polymerase sigma factor SigE; Reviewed
Probab=33.32 E-value=51 Score=24.74 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=21.9
Q ss_pred cCCCCHHHHHHHcCCCCCCH----HHHHHHHHHHHHhcCCC
Q psy9282 53 RTGMTLDEARDILDIKQLDP----KEIKQRYEFLFNANDSS 89 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~~~----~~Ik~~yr~L~~~nhPD 89 (120)
..+++..|..++||+++.+- ...++..++.+...-||
T Consensus 152 ~~g~s~~EIA~~Lgis~~tV~~~l~RArk~Lr~~l~~~~~~ 192 (203)
T PRK09647 152 IEGLSYEEIAATLGVKLGTVRSRIHRGRQQLRAALAAHAPH 192 (203)
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 45677777777777776631 44455555555555554
No 113
>PF02042 RWP-RK: RWP-RK domain; InterPro: IPR003035 This domain is named RWP-RK after a conserved motif at the C terminus of the domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development [].
Probab=32.88 E-value=29 Score=21.47 Aligned_cols=18 Identities=17% Similarity=0.191 Sum_probs=14.8
Q ss_pred CCCHHHHHHHcCCCCCCH
Q psy9282 55 GMTLDEARDILDIKQLDP 72 (120)
Q Consensus 55 ~Ms~~EA~~ILgv~~~~~ 72 (120)
.|+.+||.+-|||...+.
T Consensus 15 hlp~~eAA~~Lgv~~T~L 32 (52)
T PF02042_consen 15 HLPIKEAAKELGVSVTTL 32 (52)
T ss_pred CCCHHHHHHHhCCCHHHH
Confidence 389999999999986543
No 114
>PRK12542 RNA polymerase sigma factor; Provisional
Probab=32.78 E-value=37 Score=24.56 Aligned_cols=19 Identities=16% Similarity=0.307 Sum_probs=13.8
Q ss_pred cCCCCHHHHHHHcCCCCCC
Q psy9282 53 RTGMTLDEARDILDIKQLD 71 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~~ 71 (120)
..+||..|..++||+++.+
T Consensus 136 ~~g~s~~EIA~~lgis~~t 154 (185)
T PRK12542 136 FYNLTYQEISSVMGITEAN 154 (185)
T ss_pred HcCCCHHHHHHHHCCCHHH
Confidence 4467888888888887764
No 115
>TIGR02947 SigH_actino RNA polymerase sigma-70 factor, TIGR02947 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and (with the exception of a paralog in Thermobifida fusca YX) one-to-a-genome distribution, to represent a conserved family. This family is restricted to the Actinobacteria and each gene examined is followed by an anti-sigma factor in an apparent operon.
Probab=32.66 E-value=61 Score=23.60 Aligned_cols=20 Identities=15% Similarity=0.127 Sum_probs=16.1
Q ss_pred ccCCCCHHHHHHHcCCCCCC
Q psy9282 52 LRTGMTLDEARDILDIKQLD 71 (120)
Q Consensus 52 ~~~~Ms~~EA~~ILgv~~~~ 71 (120)
+..+||..|..++||++..+
T Consensus 144 ~~~g~s~~EIA~~lgis~~t 163 (193)
T TIGR02947 144 DVEGFAYKEIAEIMGTPIGT 163 (193)
T ss_pred hhcCCCHHHHHHHHCCCHHH
Confidence 45678999999999998874
No 116
>PRK11923 algU RNA polymerase sigma factor AlgU; Provisional
Probab=32.28 E-value=40 Score=24.47 Aligned_cols=17 Identities=6% Similarity=0.288 Sum_probs=9.5
Q ss_pred CCCCHHHHHHHcCCCCC
Q psy9282 54 TGMTLDEARDILDIKQL 70 (120)
Q Consensus 54 ~~Ms~~EA~~ILgv~~~ 70 (120)
.+||.+|-..+||+++.
T Consensus 153 ~g~s~~eIA~~lgis~~ 169 (193)
T PRK11923 153 DGLSYEDIASVMQCPVG 169 (193)
T ss_pred cCCCHHHHHHHHCCCHH
Confidence 34555666666665543
No 117
>smart00422 HTH_MERR helix_turn_helix, mercury resistance.
Probab=32.00 E-value=28 Score=21.12 Aligned_cols=17 Identities=12% Similarity=0.153 Sum_probs=14.3
Q ss_pred CCHHHHHHHcCCCCCCH
Q psy9282 56 MTLDEARDILDIKQLDP 72 (120)
Q Consensus 56 Ms~~EA~~ILgv~~~~~ 72 (120)
||..|+++++||++.+.
T Consensus 1 ~s~~eva~~~gvs~~tl 17 (70)
T smart00422 1 YTIGEVAKLAGVSVRTL 17 (70)
T ss_pred CCHHHHHHHHCcCHHHH
Confidence 68899999999997643
No 118
>PRK12522 RNA polymerase sigma factor; Provisional
Probab=31.49 E-value=50 Score=23.57 Aligned_cols=20 Identities=20% Similarity=0.195 Sum_probs=15.4
Q ss_pred ccCCCCHHHHHHHcCCCCCC
Q psy9282 52 LRTGMTLDEARDILDIKQLD 71 (120)
Q Consensus 52 ~~~~Ms~~EA~~ILgv~~~~ 71 (120)
+..+||.+|...+||++..+
T Consensus 132 ~~~~~s~~EIA~~lgis~~t 151 (173)
T PRK12522 132 YYEQYSYKEMSEILNIPIGT 151 (173)
T ss_pred HHcCCCHHHHHHHhCCCHHH
Confidence 34578888888888888764
No 119
>PRK09635 sigI RNA polymerase sigma factor SigI; Provisional
Probab=31.10 E-value=1.4e+02 Score=23.96 Aligned_cols=51 Identities=8% Similarity=-0.040 Sum_probs=29.2
Q ss_pred cCCCCHHHHHHHcCCCCCCH-HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q psy9282 53 RTGMTLDEARDILDIKQLDP-KEIKQRYEFLFNANDSSKGGSFYIQSKVVRAK 104 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~~~-~~Ik~~yr~L~~~nhPDkgGS~yl~~ki~~A~ 104 (120)
..+||..|..++||+++.+- .-+.++-++|-. ..|.....+--..++.+++
T Consensus 132 ~~g~s~~EIA~~Lgis~~tVr~~l~RAr~~Lr~-~~~~~~~~~~~~~~~~~~f 183 (290)
T PRK09635 132 IFGLPYQQIATTIGSQASTCRQLAHRARRKINE-SRIAASVEPAQHRVVTRAF 183 (290)
T ss_pred HhCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHh-hCCCCCCChHHHHHHHHHH
Confidence 34799999999999998865 334444444433 3443233443334444333
No 120
>PRK07037 extracytoplasmic-function sigma-70 factor; Validated
Probab=30.91 E-value=47 Score=23.26 Aligned_cols=34 Identities=12% Similarity=0.060 Sum_probs=18.0
Q ss_pred CCCCHHHHHHHcCCCCCCH----HHHHHHHHHHHHhcC
Q psy9282 54 TGMTLDEARDILDIKQLDP----KEIKQRYEFLFNAND 87 (120)
Q Consensus 54 ~~Ms~~EA~~ILgv~~~~~----~~Ik~~yr~L~~~nh 87 (120)
.+||.+|-.++||++..+- ...++..|+.+...|
T Consensus 124 ~~~s~~EIA~~lgis~~tV~~~l~ra~~~lr~~l~~~~ 161 (163)
T PRK07037 124 HGETQKDIARELGVSPTLVNFMIRDALVHCRKCLDACH 161 (163)
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 4566777777777766532 333344444444444
No 121
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=30.76 E-value=1.3e+02 Score=23.66 Aligned_cols=51 Identities=16% Similarity=-0.005 Sum_probs=29.5
Q ss_pred cCCCCHHHHHHHcCCCCCCH-HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q psy9282 53 RTGMTLDEARDILDIKQLDP-KEIKQRYEFLFNANDSSKGGSFYIQSKVVRAK 104 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~~~-~~Ik~~yr~L~~~nhPDkgGS~yl~~ki~~A~ 104 (120)
..+||.+|-.++||+++.+- .-+.++-++|-.. -|.....+.-...+.+++
T Consensus 129 ~~g~s~~EIA~~lg~s~~tVk~~l~RAr~~Lr~~-~~~~~~~~~~~~~~v~~f 180 (293)
T PRK09636 129 VFGVPFDEIASTLGRSPAACRQLASRARKHVRAA-RPRFPVSDEEGAELVEAF 180 (293)
T ss_pred HhCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-CCCCCCCchHHHHHHHHH
Confidence 34799999999999998864 4444444444443 342223333344444443
No 122
>smart00351 PAX Paired Box domain.
Probab=30.52 E-value=40 Score=23.70 Aligned_cols=30 Identities=17% Similarity=0.076 Sum_probs=25.4
Q ss_pred cCCCCHHHHHHHcCCCCCCHHHHHHHHHHH
Q psy9282 53 RTGMTLDEARDILDIKQLDPKEIKQRYEFL 82 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~~~~~Ik~~yr~L 82 (120)
..++|..|.++.|||+..+-..+.++|+.-
T Consensus 31 ~~G~s~~~iA~~~gvs~~tV~kwi~r~~~~ 60 (125)
T smart00351 31 QNGVRPCDISRQLCVSHGCVSKILGRYYET 60 (125)
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 356899999999999999888888888763
No 123
>COG2452 Predicted site-specific integrase-resolvase [DNA replication, recombination, and repair]
Probab=29.86 E-value=34 Score=26.70 Aligned_cols=14 Identities=29% Similarity=0.354 Sum_probs=10.7
Q ss_pred CCHHHHHHHcCCCC
Q psy9282 56 MTLDEARDILDIKQ 69 (120)
Q Consensus 56 Ms~~EA~~ILgv~~ 69 (120)
|++.|++++|||+.
T Consensus 2 m~~~e~~~~lgis~ 15 (193)
T COG2452 2 LRPKEACQLLGISY 15 (193)
T ss_pred CCHHHHHHHhCcCH
Confidence 77788888888764
No 124
>PRK09645 RNA polymerase sigma factor SigL; Provisional
Probab=29.81 E-value=62 Score=22.92 Aligned_cols=18 Identities=17% Similarity=0.119 Sum_probs=12.3
Q ss_pred CCCCHHHHHHHcCCCCCC
Q psy9282 54 TGMTLDEARDILDIKQLD 71 (120)
Q Consensus 54 ~~Ms~~EA~~ILgv~~~~ 71 (120)
.+||.+|..++||++..+
T Consensus 133 ~g~s~~EIA~~lgis~~t 150 (173)
T PRK09645 133 RGWSTAQIAADLGIPEGT 150 (173)
T ss_pred cCCCHHHHHHHHCcCHHH
Confidence 467777777777777654
No 125
>PF00196 GerE: Bacterial regulatory proteins, luxR family; InterPro: IPR000792 This domain is a DNA-binding, helix-turn-helix (HTH) domain of about 65 amino acids, present in transcription regulators of the LuxR/FixJ family of response regulators. The domain is named after Vibrio fischeri luxR, a transcriptional activator for quorum-sensing control of luminescence. LuxR-type HTH domain proteins occur in a variety of organisms. The DNA-binding HTH domain is usually located in the C-terminal region; the N-terminal region often containing an autoinducer-binding domain or a response regulatory domain. Most luxR-type regulators act as transcription activators, but some can be repressors or have a dual role for different sites. LuxR-type HTH regulators control a wide variety of activities in various biological processes. The luxR-type, DNA-binding HTH domain forms a four-helical bundle structure. The HTH motif comprises the second and third helices, known as the scaffold and recognition helix, respectively. The HTH binds DNA in the major groove, where the N-terminal part of the recognition helix makes most of the DNA contacts. The fourth helix is involved in dimerisation of gerE and traR. Signalling events by one of the four activation mechanisms described below lead to multimerisation of the regulator. The regulators bind DNA as multimers [, , ]. LuxR-type HTH proteins can be activated by one of four different mechanisms: 1) Regulators which belong to a two-component sensory transduction system where the protein is activated by its phosphorylation, generally on an aspartate residue, by a transmembrane kinase [, ]. Some proteins that belong to this category are: Rhizobiaceae fixJ (global regulator inducing expression of nitrogen-fixation genes in microaerobiosis) Escherichia coli and Salmonella typhimurium uhpA (activates hexose phosphate transport gene uhpT) E. coli narL and narP (activate nitrate reductase operon) Enterobacteria rcsB (regulation of exopolysaccharide biosynthesis in enteric and plant pathogenesis) Bordetella pertussis bvgA (virulence factor) Bacillus subtilis coma (involved in expression of late-expressing competence genes) 2) Regulators which are activated, or in very rare cases repressed, when bound to N-acyl homoserine lactones, which are used as quorum sensing molecules in a variety of Gram-negative bacteria []: V. fischeri luxR (activates bioluminescence operon) Agrobacterium tumefaciens traR (regulation of Ti plasmid transfer) Erwinia carotovora carR (control of carbapenem antibiotics biosynthesis) E. carotovora expR (virulence factor for soft rot disease; activates plant tissue macerating enzyme genes) Pseudomonas aeruginosa lasR (activates elastase gene lasB) Erwinia chrysanthemi echR and Erwinia stewartii esaR Pseudomonas chlororaphis phzR (positive regulator of phenazine antibiotic production) Pseudomonas aeruginosa rhlR (activates rhlAB operon and lasB gene) 3) Autonomous effector domain regulators, without a regulatory domain, represented by gerE []. B. subtilis gerE (transcription activator and repressor for the regulation of spore formation) 4) Multiple ligand-binding regulators, exemplified by malT []. E. coli malT (activates maltose operon; MalT binds ATP and maltotriose); GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3SZT_A 3CLO_A 1H0M_A 1L3L_A 3C57_B 1ZLK_B 1ZLJ_H 3C3W_B 1RNL_A 1ZG1_A ....
Probab=29.46 E-value=35 Score=20.35 Aligned_cols=29 Identities=17% Similarity=0.176 Sum_probs=18.6
Q ss_pred cCCCCHHHHHHHcCCCCCCH-HHHHHHHHH
Q psy9282 53 RTGMTLDEARDILDIKQLDP-KEIKQRYEF 81 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~~~-~~Ik~~yr~ 81 (120)
-.++|..|-...||+++.+- ..++..++|
T Consensus 16 ~~G~~~~eIA~~l~is~~tV~~~~~~i~~K 45 (58)
T PF00196_consen 16 AQGMSNKEIAEELGISEKTVKSHRRRIMKK 45 (58)
T ss_dssp HTTS-HHHHHHHHTSHHHHHHHHHHHHHHH
T ss_pred HhcCCcchhHHhcCcchhhHHHHHHHHHHH
Confidence 35699999999999987653 333333333
No 126
>TIGR02954 Sig70_famx3 RNA polymerase sigma-70 factor, TIGR02954 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is found in certain Bacillus and Clostridium species.
Probab=29.25 E-value=73 Score=22.54 Aligned_cols=19 Identities=11% Similarity=0.251 Sum_probs=11.1
Q ss_pred cCCCCHHHHHHHcCCCCCC
Q psy9282 53 RTGMTLDEARDILDIKQLD 71 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~~ 71 (120)
..+||..|..++||++..+
T Consensus 133 ~~g~s~~eiA~~lgis~~t 151 (169)
T TIGR02954 133 YHDLTIKEIAEVMNKPEGT 151 (169)
T ss_pred HcCCCHHHHHHHHCCCHHH
Confidence 3456666666666665543
No 127
>PRK00118 putative DNA-binding protein; Validated
Probab=29.15 E-value=60 Score=22.67 Aligned_cols=36 Identities=11% Similarity=0.070 Sum_probs=24.7
Q ss_pred ccCCCCHHHHHHHcCCCCCCH----HHHHHHHHHHHHhcC
Q psy9282 52 LRTGMTLDEARDILDIKQLDP----KEIKQRYEFLFNAND 87 (120)
Q Consensus 52 ~~~~Ms~~EA~~ILgv~~~~~----~~Ik~~yr~L~~~nh 87 (120)
+..+||..|..++||+++.+- ...++.-+..+...|
T Consensus 30 y~eg~S~~EIAe~lGIS~~TV~r~L~RArkkLr~~~~~~~ 69 (104)
T PRK00118 30 YLDDYSLGEIAEEFNVSRQAVYDNIKRTEKLLEDYEEKLH 69 (104)
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHC
Confidence 456899999999999999853 334444444444444
No 128
>TIGR03879 near_KaiC_dom probable regulatory domain. This model describes a common domain shared by two different families of proteins, each of which occurs regularly next to its corresponding partner family, a probable regulatory with homology to KaiC. By implication, this protein family likely is also involved in sensory transduction and/or regulation.
Probab=29.03 E-value=64 Score=21.27 Aligned_cols=19 Identities=21% Similarity=0.214 Sum_probs=16.5
Q ss_pred cCCCCHHHHHHHcCCCCCC
Q psy9282 53 RTGMTLDEARDILDIKQLD 71 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~~ 71 (120)
..+||..|-.++||+++.+
T Consensus 30 ~eGlS~kEIAe~LGIS~~T 48 (73)
T TIGR03879 30 EAGKTASEIAEELGRTEQT 48 (73)
T ss_pred HcCCCHHHHHHHHCcCHHH
Confidence 4779999999999999764
No 129
>PRK09642 RNA polymerase sigma factor SigW; Reviewed
Probab=28.63 E-value=66 Score=22.49 Aligned_cols=18 Identities=11% Similarity=-0.077 Sum_probs=10.8
Q ss_pred CCCCHHHHHHHcCCCCCC
Q psy9282 54 TGMTLDEARDILDIKQLD 71 (120)
Q Consensus 54 ~~Ms~~EA~~ILgv~~~~ 71 (120)
.+||.+|..++||++..+
T Consensus 121 ~g~s~~EIA~~lgis~~t 138 (160)
T PRK09642 121 EEKSYQEIALQEKIEVKT 138 (160)
T ss_pred hCCCHHHHHHHHCCCHHH
Confidence 456666666666666553
No 130
>PRK05602 RNA polymerase sigma factor; Reviewed
Probab=28.37 E-value=68 Score=23.12 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=8.6
Q ss_pred CCCCHHHHHHHcCCCCC
Q psy9282 54 TGMTLDEARDILDIKQL 70 (120)
Q Consensus 54 ~~Ms~~EA~~ILgv~~~ 70 (120)
.+||.+|..++||++..
T Consensus 143 ~g~s~~EIA~~lgis~~ 159 (186)
T PRK05602 143 QGLSNIEAAAVMDISVD 159 (186)
T ss_pred cCCCHHHHHHHhCcCHH
Confidence 34555555555555544
No 131
>PRK15088 PTS system mannose-specific transporter subunits IIAB; Provisional
Probab=28.33 E-value=1.2e+02 Score=25.13 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=25.0
Q ss_pred HHHcCCCCC-CHHHHHHHHHHHHHhcCC-CC--------CCCHHH
Q psy9282 62 RDILDIKQL-DPKEIKQRYEFLFNANDS-SK--------GGSFYI 96 (120)
Q Consensus 62 ~~ILgv~~~-~~~~Ik~~yr~L~~~nhP-Dk--------gGS~yl 96 (120)
...+++.+. +.+++.+++++++...+. |. |||||-
T Consensus 31 v~~v~~~~~~~~~~~~~~l~~~i~~~~~~d~vlILtDl~GGSP~N 75 (322)
T PRK15088 31 VAWIDFVPGENAETLIEKYNAQLAKLDTSKGVLFLVDTWGGSPFN 75 (322)
T ss_pred eEEEEccCCCCHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHH
Confidence 445666665 568899999998887643 32 999983
No 132
>PF08673 RsbU_N: Phosphoserine phosphatase RsbU, N-terminal domain; InterPro: IPR014787 The phosphoserine phosphatase RsbU acts as a positive regulator of the general stress-response factor of Gram-positive organisms, sigma-B. RsbU dephosphorylates rsbV in response to environmental stress conveyed from the rsbXST module. The phosphatase activity of RsbU is stimulated during the stress response by associating with the RsbT kinase. This association leads to the induction of sigmaB activity. The N-terminal domain forms a helix-swapped dimer that is otherwise similar to the KaiA domain dimer. Deletions in the N-terminal domain are deleterious to the activity of RsbU. The C-terminal domain of RsbU is similar to the catalytic domains of PP2C-type phosphatases [].; PDB: 2J6Y_D 2J6Z_A 2J70_A 1W53_A.
Probab=28.10 E-value=1.8e+02 Score=19.16 Aligned_cols=35 Identities=14% Similarity=0.120 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy9282 71 DPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEV 111 (120)
Q Consensus 71 ~~~~Ik~~yr~L~~~nhPDkgGS~yl~~ki~~A~e~L~~~~ 111 (120)
+|+||-.-|++++..-.|+- -..|..+.++|.+-+
T Consensus 36 ~PEeIv~iH~~~v~~l~~~~------~~~v~~sld~LlEvm 70 (77)
T PF08673_consen 36 SPEEIVEIHKSAVQELSPSL------PEDVLDSLDFLLEVM 70 (77)
T ss_dssp -HHHHHHHHHHHHHHH-TTS-------HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcccc------HHHHHHHHHHHHHHH
Confidence 68999999999999999974 556777888877643
No 133
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=27.90 E-value=1.7e+02 Score=18.74 Aligned_cols=47 Identities=13% Similarity=0.129 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCCCHHHHHHHcCCCCC-CH
Q psy9282 5 IIQIAVLGAQVVGRAFAKALRQEYAASQEAAKRAGGGRQGTAQASENLRTGMTLDEARDILDIKQL-DP 72 (120)
Q Consensus 5 ia~l~v~g~~~~gra~~~A~rqa~~~~~~a~~~~~~~~~~~~~~~~~~~~~Ms~~EA~~ILgv~~~-~~ 72 (120)
+..|+.++.-+=.+.++..--+.+++. -.++|.+|-+++|||+.+ ++
T Consensus 16 L~~l~~AA~yL~I~~L~~~~~~~iA~~---------------------i~gks~eeir~~fgi~~d~t~ 63 (78)
T PF01466_consen 16 LFDLLNAANYLDIKGLLDLCCKYIANM---------------------IKGKSPEEIRKYFGIENDLTP 63 (78)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHH---------------------HTTS-HHHHHHHHT---TSSH
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHH---------------------hcCCCHHHHHHHcCCCCCCCH
Confidence 455556655555566655554433321 235899999999999876 54
No 134
>PF03874 RNA_pol_Rpb4: RNA polymerase Rpb4; InterPro: IPR005574 The eukaryotic RNA polymerase subunits RPB4 and RPB7 form a heterodimer that reversibly associates with the RNA polymerase II core. Archaeal cells contain a single RNAP made up of about 12 subunits, displaying considerable homology to the eukaryotic RNAPII subunits. The RPB4 and RPB7 homologs are called subunits F and E, respectively, and have been shown to form a stable heterodimer. While the RPB7 homologue is reasonably well conserved, the similarity between the eukaryotic RPB4 and the archaeal F subunit is barely detectable [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3AYH_A 3H3V_E 4A3C_D 3PO3_D 3HOX_D 2R92_D 3HOU_D 1Y77_D 2R7Z_D 3QT1_D ....
Probab=27.61 E-value=38 Score=23.11 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=16.6
Q ss_pred CCCHHHHHHHcCCCCCCHHHHH
Q psy9282 55 GMTLDEARDILDIKQLDPKEIK 76 (120)
Q Consensus 55 ~Ms~~EA~~ILgv~~~~~~~Ik 76 (120)
+++..|+++|+|+.|.+.++++
T Consensus 70 ~L~~~E~~qi~Nl~P~~~~El~ 91 (117)
T PF03874_consen 70 GLTEFEILQIINLRPTTAVELR 91 (117)
T ss_dssp TS-HHHHHHHHHH--SSHHHHH
T ss_pred cCCHHHHHHHhcCCCCCHHHHH
Confidence 4999999999999999887776
No 135
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=26.95 E-value=31 Score=19.68 Aligned_cols=16 Identities=19% Similarity=0.283 Sum_probs=11.6
Q ss_pred CHHHHHHHcCCCCCCH
Q psy9282 57 TLDEARDILDIKQLDP 72 (120)
Q Consensus 57 s~~EA~~ILgv~~~~~ 72 (120)
+..+|.+.|||+..+.
T Consensus 20 n~~~aA~~Lgisr~tL 35 (42)
T PF02954_consen 20 NVSKAARLLGISRRTL 35 (42)
T ss_dssp -HHHHHHHHTS-HHHH
T ss_pred CHHHHHHHHCCCHHHH
Confidence 4569999999997765
No 136
>PRK12523 RNA polymerase sigma factor; Reviewed
Probab=26.67 E-value=61 Score=23.13 Aligned_cols=30 Identities=17% Similarity=0.099 Sum_probs=21.1
Q ss_pred cCCCCHHHHHHHcCCCCCCH-HHHHHHHHHH
Q psy9282 53 RTGMTLDEARDILDIKQLDP-KEIKQRYEFL 82 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~~~-~~Ik~~yr~L 82 (120)
..+||..|..++||++..+- ..+.++-++|
T Consensus 133 ~~g~s~~EIA~~lgis~~tV~~~l~ra~~~~ 163 (172)
T PRK12523 133 LDGMGHAEIAERLGVSVSRVRQYLAQGLRQC 163 (172)
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 45788899999999887753 4455555554
No 137
>PRK12528 RNA polymerase sigma factor; Provisional
Probab=26.29 E-value=64 Score=22.64 Aligned_cols=31 Identities=13% Similarity=0.040 Sum_probs=22.0
Q ss_pred ccCCCCHHHHHHHcCCCCCCH-HHHHHHHHHH
Q psy9282 52 LRTGMTLDEARDILDIKQLDP-KEIKQRYEFL 82 (120)
Q Consensus 52 ~~~~Ms~~EA~~ILgv~~~~~-~~Ik~~yr~L 82 (120)
+..+||.+|-..+||++..+- ..+.++-++|
T Consensus 126 ~~~g~s~~EIA~~l~is~~tV~~~l~ra~~~~ 157 (161)
T PRK12528 126 QVDGLGYGEIATELGISLATVKRYLNKAAMRC 157 (161)
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 345789999999999887754 5555555554
No 138
>TIGR02957 SigX4 RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Probab=26.24 E-value=1.9e+02 Score=22.68 Aligned_cols=51 Identities=8% Similarity=-0.048 Sum_probs=29.6
Q ss_pred cCCCCHHHHHHHcCCCCCCH-HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q psy9282 53 RTGMTLDEARDILDIKQLDP-KEIKQRYEFLFNANDSSKGGSFYIQSKVVRAK 104 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~~~-~~Ik~~yr~L~~~nhPDkgGS~yl~~ki~~A~ 104 (120)
..+||.+|..++||+++.+- .-+.++-++|-.. -|...-++--+.++.+++
T Consensus 122 ~~g~s~~EIA~~lg~s~~tVr~~l~RAr~~Lr~~-~~~~~~~~~~~~~~~~~f 173 (281)
T TIGR02957 122 VFDYPYEEIASIVGKSEANCRQLVSRARRHLDAR-RPRFEVSREESRQLLERF 173 (281)
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-CCCCCCChHHHHHHHHHH
Confidence 35799999999999988764 4444444444433 232233444344444444
No 139
>TIGR00798 mtc tricarboxylate carrier. The MTC family consists of a limited number of homologues, all from eukaryotes. A single member of the family has been functionally characterized, the tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism.
Probab=26.00 E-value=73 Score=26.64 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=27.0
Q ss_pred cccCCCCHHHHHHHcCC-C-----CCCHHHHHHHHHHHHHhcCCCCC
Q psy9282 51 NLRTGMTLDEARDILDI-K-----QLDPKEIKQRYEFLFNANDSSKG 91 (120)
Q Consensus 51 ~~~~~Ms~~EA~~ILgv-~-----~~~~~~Ik~~yr~L~~~nhPDkg 91 (120)
.|.+.-.++||.++|.- + +.+.+|+-++=+-.=...|||.|
T Consensus 31 lf~s~~~L~~a~~ll~~yr~g~~~~~t~~~lW~Akk~~dS~~HPDTG 77 (318)
T TIGR00798 31 LFSSEKQLEKAREIVEDYKAGKASPLTVDELWRAKKLYDSAFHPDTG 77 (318)
T ss_pred hcCCHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhcCCCCC
Confidence 35556677888888762 2 12446776665656678899986
No 140
>PRK12518 RNA polymerase sigma factor; Provisional
Probab=25.98 E-value=81 Score=22.32 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=11.2
Q ss_pred CCCCHHHHHHHcCCCCCC
Q psy9282 54 TGMTLDEARDILDIKQLD 71 (120)
Q Consensus 54 ~~Ms~~EA~~ILgv~~~~ 71 (120)
.+||.+|..++||+++.+
T Consensus 135 ~g~s~~eIA~~lg~s~~t 152 (175)
T PRK12518 135 EDLPQKEIAEILNIPVGT 152 (175)
T ss_pred cCCCHHHHHHHHCCCHHH
Confidence 456666666666666553
No 141
>PRK12516 RNA polymerase sigma factor; Provisional
Probab=25.95 E-value=91 Score=22.88 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=12.7
Q ss_pred cCCCCHHHHHHHcCCCCCC
Q psy9282 53 RTGMTLDEARDILDIKQLD 71 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~~ 71 (120)
..+||..|..++||+++.+
T Consensus 130 ~~g~s~~EIA~~Lgis~~t 148 (187)
T PRK12516 130 ASGFAYEEAAEICGCAVGT 148 (187)
T ss_pred HcCCCHHHHHHHHCCCHHH
Confidence 3467777777777777653
No 142
>PRK12525 RNA polymerase sigma factor; Provisional
Probab=25.36 E-value=79 Score=22.48 Aligned_cols=31 Identities=13% Similarity=0.209 Sum_probs=21.2
Q ss_pred cCCCCHHHHHHHcCCCCCCH-HHHHHHHHHHH
Q psy9282 53 RTGMTLDEARDILDIKQLDP-KEIKQRYEFLF 83 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~~~-~~Ik~~yr~L~ 83 (120)
..+||.+|...+||++..+- ..+.++.+++.
T Consensus 132 ~eg~s~~EIA~~l~is~~tV~~~l~ra~~~~~ 163 (168)
T PRK12525 132 LEGLTYVEIGERLGVSLSRIHQYMVEAFKCCY 163 (168)
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 45788888888888887653 55555555543
No 143
>PRK10188 DNA-binding transcriptional activator SdiA; Provisional
Probab=25.28 E-value=61 Score=25.20 Aligned_cols=34 Identities=24% Similarity=0.096 Sum_probs=26.1
Q ss_pred cCCCCHHHHHHHcCCCCCCH-HHHHHHHHHHHHhc
Q psy9282 53 RTGMTLDEARDILDIKQLDP-KEIKQRYEFLFNAN 86 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~~~-~~Ik~~yr~L~~~n 86 (120)
-.++|..|-..|||+++.|- .-|+..++||=-.|
T Consensus 192 a~G~t~~eIa~~l~is~~TV~~h~~~~~~KL~~~n 226 (240)
T PRK10188 192 AEGKTSAEIAMILSISENTVNFHQKNMQKKFNAPN 226 (240)
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCC
Confidence 34799999999999998875 66777777774444
No 144
>PRK09415 RNA polymerase factor sigma C; Reviewed
Probab=24.65 E-value=83 Score=22.69 Aligned_cols=17 Identities=6% Similarity=0.317 Sum_probs=9.2
Q ss_pred CCCCHHHHHHHcCCCCC
Q psy9282 54 TGMTLDEARDILDIKQL 70 (120)
Q Consensus 54 ~~Ms~~EA~~ILgv~~~ 70 (120)
.+||.+|..++||++..
T Consensus 142 ~g~s~~EIA~~l~is~~ 158 (179)
T PRK09415 142 EELSIKEIAEVTGVNEN 158 (179)
T ss_pred cCCCHHHHHHHHCCCHH
Confidence 34555555555555444
No 145
>PRK09652 RNA polymerase sigma factor RpoE; Provisional
Probab=24.63 E-value=60 Score=22.74 Aligned_cols=16 Identities=19% Similarity=0.364 Sum_probs=7.3
Q ss_pred CCCHHHHHHHcCCCCC
Q psy9282 55 GMTLDEARDILDIKQL 70 (120)
Q Consensus 55 ~Ms~~EA~~ILgv~~~ 70 (120)
+||..|..+.||++..
T Consensus 144 ~~s~~eIA~~lgis~~ 159 (182)
T PRK09652 144 GLSYEEIAEIMGCPIG 159 (182)
T ss_pred CCCHHHHHHHHCCCHH
Confidence 4444444444444433
No 146
>PF13411 MerR_1: MerR HTH family regulatory protein; PDB: 2JML_A 3GP4_A 3GPV_B.
Probab=24.42 E-value=31 Score=20.93 Aligned_cols=30 Identities=17% Similarity=0.131 Sum_probs=20.6
Q ss_pred CCHHHHHHHcCCCCCCHHHHHHHHHHHHHhcCCCC
Q psy9282 56 MTLDEARDILDIKQLDPKEIKQRYEFLFNANDSSK 90 (120)
Q Consensus 56 Ms~~EA~~ILgv~~~~~~~Ik~~yr~L~~~nhPDk 90 (120)
||..|+.+++||++.+ -+.|.+... ..|.+
T Consensus 1 yti~eva~~~gvs~~t----lr~y~~~gl-l~~~~ 30 (69)
T PF13411_consen 1 YTIKEVAKLLGVSPST----LRYYEREGL-LPPPR 30 (69)
T ss_dssp EEHHHHHHHTTTTHHH----HHHHHHTTS-STTBE
T ss_pred CcHHHHHHHHCcCHHH----HHHHHHhcC-ccccc
Confidence 6889999999998543 345666555 45544
No 147
>PRK09644 RNA polymerase sigma factor SigM; Provisional
Probab=24.42 E-value=72 Score=22.51 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhC
Q psy9282 96 IQSKVVRAKERIDQEVKKVSG 116 (120)
Q Consensus 96 l~~ki~~A~e~L~~~~~~~~~ 116 (120)
+-+.+.+|+..|.+.+....+
T Consensus 141 v~~~l~Rar~~Lr~~l~~~~~ 161 (165)
T PRK09644 141 YKSHLFRGRKRLKALLKEEKS 161 (165)
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 344556666666665554443
No 148
>PF08951 EntA_Immun: Enterocin A Immunity; InterPro: IPR015046 Gram-positive lactobacilli produce bacteriocins to kill closely-related competitor species []. To protect themselves from the bacteriocidal activity of this molecule they co-express an immunity protein (for discussion of this operon see Bacteriocin_IIc PF10439 from PFAM). The immunity protein structure is a soluble, cytoplasmic, antiparallel four alpha-helical globular bundle with a fifth, more flexible and more divergent C-terminal helical hair-pin []. The C-terminal hair-pin recognises the C terminus of the producer bacteriocin and this interaction is sufficient to dis-orient the bacteriocin within the membrane and close up the permeabilising pore that on its own the bacteriocin creates []. These immunity proteins interact in the same way with other bacteriocins, family Bacteriocin_II, PF01721 from PFAM. Since many enterococci can produce more than one bacteriocin it seems likely that the whole operon can be carried on transferable plasmids []. ; PDB: 2BL8_C 2BL7_A 2K19_A 2FU2_A 1TDP_A 2IP6_A.
Probab=24.26 E-value=1.1e+02 Score=18.67 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Q psy9282 74 EIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERID 108 (120)
Q Consensus 74 ~Ik~~yr~L~~~nhPDkgGS~yl~~ki~~A~e~L~ 108 (120)
++......++ ++||...+.++..-+..|+..|+
T Consensus 5 ~l~~~i~~l~--~~~~~~~~~~lr~iL~~a~~~l~ 37 (75)
T PF08951_consen 5 ELLNIIYNLY--NDLDVKINEELRKILLKAKNELE 37 (75)
T ss_dssp HHHHHHHHHH--CCHCHHCGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hcccccCCHHHHHHHHHHHHHHh
Confidence 3444444455 66666666666666666665554
No 149
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=23.96 E-value=1.4e+02 Score=20.52 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=23.9
Q ss_pred HHHcCCCCC-CHHHHHHHHHHHHHhcCCCC---------CCCHHH
Q psy9282 62 RDILDIKQL-DPKEIKQRYEFLFNANDSSK---------GGSFYI 96 (120)
Q Consensus 62 ~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDk---------gGS~yl 96 (120)
...+++.+. +.+++.++.++++...+.+. ||||+-
T Consensus 29 i~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~viil~Dl~GGSp~n 73 (122)
T cd00006 29 VEAIDFPPGESPDDLLEKIKAALAELDSGEGVLILTDLFGGSPNN 73 (122)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCCcEEEEEeCCCCCHHH
Confidence 344555554 56888888888887765432 899984
No 150
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=23.90 E-value=49 Score=18.42 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=11.0
Q ss_pred CCCHHHHHHHcCCCCCC
Q psy9282 55 GMTLDEARDILDIKQLD 71 (120)
Q Consensus 55 ~Ms~~EA~~ILgv~~~~ 71 (120)
+||.+|=...||+...+
T Consensus 2 ~mtr~diA~~lG~t~ET 18 (32)
T PF00325_consen 2 PMTRQDIADYLGLTRET 18 (32)
T ss_dssp E--HHHHHHHHTS-HHH
T ss_pred CcCHHHHHHHhCCcHHH
Confidence 48899988999987544
No 151
>TIGR02983 SigE-fam_strep RNA polymerase sigma-70 factor, sigma-E family. This group of similar sigma-70 factors includes the sigE factor from Streptomyces coelicolor. The family appears to include a paralagous expansion in the Streptomycetes lineage, while related Actinomycetales have at most two representatives.
Probab=23.86 E-value=1e+02 Score=21.46 Aligned_cols=19 Identities=11% Similarity=0.087 Sum_probs=13.1
Q ss_pred cCCCCHHHHHHHcCCCCCC
Q psy9282 53 RTGMTLDEARDILDIKQLD 71 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~~ 71 (120)
..+||.+|...+||++..+
T Consensus 124 ~~g~s~~eIA~~lgis~~t 142 (162)
T TIGR02983 124 YEDLSEAQVAEALGISVGT 142 (162)
T ss_pred HhcCCHHHHHHHhCCCHHH
Confidence 4467777777777777654
No 152
>PRK12515 RNA polymerase sigma factor; Provisional
Probab=23.66 E-value=1.1e+02 Score=22.17 Aligned_cols=18 Identities=11% Similarity=0.440 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy9282 96 IQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 96 l~~ki~~A~e~L~~~~~~ 113 (120)
+.+.+.+|+..|...++.
T Consensus 164 V~~~l~Rar~~Lr~~l~~ 181 (189)
T PRK12515 164 VKTRMFYARKKLAELLKA 181 (189)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566666666665554
No 153
>PRK08570 rpl19e 50S ribosomal protein L19e; Reviewed
Probab=23.50 E-value=1.2e+02 Score=22.78 Aligned_cols=33 Identities=12% Similarity=-0.034 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q psy9282 72 PKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAK 104 (120)
Q Consensus 72 ~~~Ik~~yr~L~~~nhPDkgGS~yl~~ki~~A~ 104 (120)
.++|++-.+.=+..-.|.+|-|.+-..+..+++
T Consensus 38 R~dIR~LI~~G~I~~kp~kg~Sr~R~r~~~~~r 70 (150)
T PRK08570 38 REDIRELIKEGVIKAKPKKGISRGRARERHEKR 70 (150)
T ss_pred HHHHHHHHHCCCeeecCccCCChHHHHHHHHHH
Confidence 355655555555566899998887665555444
No 154
>PF04355 SmpA_OmlA: SmpA / OmlA family; InterPro: IPR007450 This is a bacterial outer membrane lipoprotein, possibly involved in maintaining the structural integrity of the cell envelope []. The lipid attachment site is a conserved N-terminal cysteine residue sometimes found adjacent to the OmpA domain (IPR006665 from INTERPRO).; GO: 0019867 outer membrane; PDB: 4DM5_C 2PXG_A 2YH9_B 2KXX_A 2KM7_A.
Probab=23.49 E-value=62 Score=20.09 Aligned_cols=19 Identities=32% Similarity=0.583 Sum_probs=14.3
Q ss_pred cccCCCCHHHHHHHcCCCC
Q psy9282 51 NLRTGMTLDEARDILDIKQ 69 (120)
Q Consensus 51 ~~~~~Ms~~EA~~ILgv~~ 69 (120)
....+||.+|-..+||-+.
T Consensus 11 ~i~~GmTk~qV~~lLG~P~ 29 (71)
T PF04355_consen 11 QIKPGMTKDQVRALLGSPS 29 (71)
T ss_dssp TT-TTSBHHHHHHHHTS-S
T ss_pred hhcCCCCHHHHHHhcCCCC
Confidence 3456799999999999654
No 155
>cd00481 Ribosomal_L19e Ribosomal protein L19e. L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.
Probab=23.45 E-value=1.2e+02 Score=22.57 Aligned_cols=34 Identities=18% Similarity=0.062 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q psy9282 71 DPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAK 104 (120)
Q Consensus 71 ~~~~Ik~~yr~L~~~nhPDkgGS~yl~~ki~~A~ 104 (120)
|.++|++-.+.=+..-.|.+|-|.+-..+..+++
T Consensus 34 tR~dIR~LIkdG~I~~kp~kg~Sr~R~r~~~~~r 67 (145)
T cd00481 34 TREDIRKLIKDGLIIKKPKKGHSRGRARKRHEAR 67 (145)
T ss_pred hHHHHHHHHHCCCeeecCCCCCChHHHHHHHHHH
Confidence 3455665555555566899998887666555554
No 156
>PRK09047 RNA polymerase factor sigma-70; Validated
Probab=23.25 E-value=79 Score=21.94 Aligned_cols=19 Identities=11% Similarity=0.115 Sum_probs=13.9
Q ss_pred cCCCCHHHHHHHcCCCCCC
Q psy9282 53 RTGMTLDEARDILDIKQLD 71 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~~ 71 (120)
..+||.+|...+||++..+
T Consensus 120 ~~g~s~~EIA~~lgis~~t 138 (161)
T PRK09047 120 WEDMDVAETAAAMGCSEGS 138 (161)
T ss_pred HhcCCHHHHHHHHCCCHHH
Confidence 4468888888888887664
No 157
>TIGR02999 Sig-70_X6 RNA polymerase sigma factor, TIGR02999 family. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found in a variety of species including Rhodopirellula baltica which encodes a paralogous group of five.
Probab=23.17 E-value=78 Score=22.58 Aligned_cols=16 Identities=25% Similarity=0.578 Sum_probs=8.1
Q ss_pred CCCHHHHHHHcCCCCC
Q psy9282 55 GMTLDEARDILDIKQL 70 (120)
Q Consensus 55 ~Ms~~EA~~ILgv~~~ 70 (120)
+||..|...+||++..
T Consensus 150 g~s~~EIA~~lgis~~ 165 (183)
T TIGR02999 150 GLTVEEIAELLGVSVR 165 (183)
T ss_pred CCCHHHHHHHhCCCHH
Confidence 4555555555555544
No 158
>PRK08301 sporulation sigma factor SigE; Reviewed
Probab=23.16 E-value=80 Score=23.86 Aligned_cols=19 Identities=32% Similarity=0.254 Sum_probs=12.7
Q ss_pred cCCCCHHHHHHHcCCCCCC
Q psy9282 53 RTGMTLDEARDILDIKQLD 71 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~~ 71 (120)
..+||.+|..++||++..+
T Consensus 196 ~eg~s~~EIA~~lgis~~t 214 (234)
T PRK08301 196 GEEKTQKEVADMLGISQSY 214 (234)
T ss_pred CCCCCHHHHHHHHCCCHHH
Confidence 3567777777777777654
No 159
>PRK12530 RNA polymerase sigma factor; Provisional
Probab=22.94 E-value=78 Score=23.14 Aligned_cols=19 Identities=11% Similarity=0.095 Sum_probs=15.0
Q ss_pred cCCCCHHHHHHHcCCCCCC
Q psy9282 53 RTGMTLDEARDILDIKQLD 71 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~~ 71 (120)
..+||..|...+||+++.+
T Consensus 148 ~~g~s~~EIA~~lgis~~t 166 (189)
T PRK12530 148 YLELSSEQICQECDISTSN 166 (189)
T ss_pred HcCCCHHHHHHHHCCCHHH
Confidence 3478888888888888775
No 160
>PRK04217 hypothetical protein; Provisional
Probab=22.92 E-value=1e+02 Score=21.75 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=15.1
Q ss_pred cCCCCHHHHHHHcCCCCCCH
Q psy9282 53 RTGMTLDEARDILDIKQLDP 72 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~~~ 72 (120)
..+||.+|..++||++..+-
T Consensus 56 ~eGlS~~EIAk~LGIS~sTV 75 (110)
T PRK04217 56 YEGLTQEEAGKRMGVSRGTV 75 (110)
T ss_pred HcCCCHHHHHHHHCcCHHHH
Confidence 35678888888888887753
No 161
>PF03374 ANT: Phage antirepressor protein KilAC domain; InterPro: IPR005039 This entry is represented by Bacteriophage P1, Ant1 C-terminal domain, which represents the processed Ant2 chain. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Prophages P1 and P7 exist as unit copy DNA plasmids in the bacterial cell. Maintenance of the prophage state requires the continuous expression of two repressors: (i) C1 is a protein which negatively regulates the expression of lytic genes including the C1 inactivator gene coi, and (ii) C4 is an antisense RNA which specifically inhibits the synthesis of an anti-repressor Ant.; GO: 0003677 DNA binding
Probab=22.37 E-value=30 Score=23.36 Aligned_cols=32 Identities=19% Similarity=0.188 Sum_probs=21.5
Q ss_pred cCCCCHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q psy9282 53 RTGMTLDEARDILDIKQLDPKEIKQRYEFLFN 84 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~~~~~Ik~~yr~L~~ 84 (120)
...|+..|+.++||+.+...-++-....-|+.
T Consensus 22 ~~~~ti~~~AK~L~i~~~~l~~~Lr~~g~l~~ 53 (111)
T PF03374_consen 22 DGLYTIREAAKLLGIGRNKLFQWLREKGWLYR 53 (111)
T ss_pred CCCccHHHHHHHhCCCHHHHHHHHHhCCceEE
Confidence 36799999999999997655333333333333
No 162
>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C terminus of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [, ].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005634 nucleus; PDB: 1BH9_B 1BH8_B.
Probab=22.31 E-value=83 Score=21.50 Aligned_cols=12 Identities=25% Similarity=0.695 Sum_probs=9.2
Q ss_pred CHHHHHHHHHHH
Q psy9282 71 DPKEIKQRYEFL 82 (120)
Q Consensus 71 ~~~~Ik~~yr~L 82 (120)
.|..|+++||||
T Consensus 79 ~P~hlreA~rrL 90 (90)
T PF04719_consen 79 QPDHLREAYRRL 90 (90)
T ss_dssp -HHHHHHHHHHH
T ss_pred CcHHHHHHHHhC
Confidence 568888888886
No 163
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=22.26 E-value=1.9e+02 Score=24.12 Aligned_cols=50 Identities=22% Similarity=0.422 Sum_probs=32.3
Q ss_pred cCCCCHHHHHHHcCCCCCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHH
Q psy9282 53 RTGMTLDEARDILDIKQLDPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQ 109 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~~~~~Ik~~yr~L~~~nhPDkgGS~yl~~ki~~A~e~L~~ 109 (120)
...+|.+|=.+.+|+++ +++.|+|...=-..-+..|+.-++++|.+.|.+
T Consensus 234 e~plsl~~LA~~~~~S~-------R~leRlF~~~lG~sP~~yy~~lRL~~Ar~LL~~ 283 (328)
T COG4977 234 EEPLSLEELADRAGLSR-------RQLERLFRAELGVSPARYYLRLRLERARRLLEQ 283 (328)
T ss_pred cCCcCHHHHHHHhCCCH-------HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555553 345566666543333556999999999999865
No 164
>PF12523 DUF3725: Protein of unknown function (DUF3725); InterPro: IPR022199 This domain family is found in viruses, and is approximately 70 amino acids in length. The family is found in association with PF01577 from PFAM. There is a conserved FLE sequence motif.
Probab=22.05 E-value=68 Score=21.25 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9282 5 IIQIAVLGAQVVGRAFAKALRQ 26 (120)
Q Consensus 5 ia~l~v~g~~~~gra~~~A~rq 26 (120)
|+||++.+..=+||.|++-=|.
T Consensus 13 i~qLv~i~naE~gR~FLEg~~~ 34 (74)
T PF12523_consen 13 ILQLVQIGNAEVGRTFLEGNRF 34 (74)
T ss_pred hhhHHHhccHHHHHHHHhcchH
Confidence 6899999999999999976543
No 165
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=21.87 E-value=83 Score=24.89 Aligned_cols=17 Identities=18% Similarity=0.489 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHhcCC
Q psy9282 72 PKEIKQRYEFLFNANDS 88 (120)
Q Consensus 72 ~~~Ik~~yr~L~~~nhP 88 (120)
.+.|+++||.||..+-|
T Consensus 205 ~~~~~~~~~~~~~~~~~ 221 (255)
T PRK12461 205 IRALKRAYKIIYRSGLS 221 (255)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 47899999999976554
No 166
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=21.54 E-value=1.9e+02 Score=17.70 Aligned_cols=33 Identities=15% Similarity=0.311 Sum_probs=23.5
Q ss_pred CCCHHHHHHHcCCCCC---CHHHHHHHHHHHHHhcCC
Q psy9282 55 GMTLDEARDILDIKQL---DPKEIKQRYEFLFNANDS 88 (120)
Q Consensus 55 ~Ms~~EA~~ILgv~~~---~~~~Ik~~yr~L~~~nhP 88 (120)
.|+.+|-++.|+.+.. +.+|+.++- +.+-.|..
T Consensus 3 ~~~~~~v~~~l~t~~~~GLs~~ev~~r~-~~~G~N~l 38 (69)
T PF00690_consen 3 QLSVEEVLKRLNTSSSQGLSSEEVEERR-KKYGPNEL 38 (69)
T ss_dssp TSSHHHHHHHHTTBTSSBBTHHHHHHHH-HHHSSSST
T ss_pred CCCHHHHHHHHCcCCCCCCCHHHHHHHH-Hhcccccc
Confidence 5889999999996655 567776654 45666763
No 167
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=21.24 E-value=51 Score=26.38 Aligned_cols=15 Identities=47% Similarity=0.485 Sum_probs=10.1
Q ss_pred cCCCCHHHHHHHcCC
Q psy9282 53 RTGMTLDEARDILDI 67 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv 67 (120)
+..+|.+||++|||+
T Consensus 258 revAt~~eaR~iLgl 272 (272)
T PF05853_consen 258 REVATPAEARAILGL 272 (272)
T ss_dssp -EB--HHHHHHHHT-
T ss_pred CCCCCHHHHHHHhCc
Confidence 456999999999996
No 168
>KOG2070|consensus
Probab=21.08 E-value=1.5e+02 Score=26.88 Aligned_cols=18 Identities=17% Similarity=0.257 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhcCCCCCC
Q psy9282 75 IKQRYEFLFNANDSSKGG 92 (120)
Q Consensus 75 Ik~~yr~L~~~nhPDkgG 92 (120)
+-+--.|-|..+|||+|.
T Consensus 246 lLQELERhme~~HpDrgD 263 (661)
T KOG2070|consen 246 LLQELERHMEDYHPDRGD 263 (661)
T ss_pred HHHHHHHhccccCCchHH
Confidence 444556779999999873
No 169
>CHL00027 rps15 ribosomal protein S15
Probab=20.89 E-value=1.9e+02 Score=19.81 Aligned_cols=29 Identities=7% Similarity=0.046 Sum_probs=13.5
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHHHHhh
Q psy9282 84 NANDSSKGGSFYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 84 ~~nhPDkgGS~yl~~ki~~A~e~L~~~~~~ 113 (120)
..|..|...---|...|.+=+ .|..++..
T Consensus 41 k~hkKD~~s~RgL~~lv~kRk-rLL~YL~r 69 (90)
T CHL00027 41 ELHKKDYSSQRGLRKILGKRQ-RLLAYLSK 69 (90)
T ss_pred HHCCCcchhHHHHHHHHHHHH-HHHHHHHh
Confidence 344455554455555554433 34444443
No 170
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=20.82 E-value=1.9e+02 Score=17.91 Aligned_cols=32 Identities=16% Similarity=0.381 Sum_probs=18.0
Q ss_pred CCHHHHHHHcCCCCC-CHHH-HHHHHHHHHHhcCCC
Q psy9282 56 MTLDEARDILDIKQL-DPKE-IKQRYEFLFNANDSS 89 (120)
Q Consensus 56 Ms~~EA~~ILgv~~~-~~~~-Ik~~yr~L~~~nhPD 89 (120)
-+..-|.+.||-.+. +.++ |+..++ ...+||+
T Consensus 27 Ad~~kA~~~LgW~p~~~L~~~i~~~w~--W~~~np~ 60 (62)
T PF13950_consen 27 ADISKAREELGWKPKYSLEDMIRDAWN--WQKKNPN 60 (62)
T ss_dssp B--HHHHHHC----SSSHHHHHHHHHH--HHHHSTT
T ss_pred CCHHHHHHHhCCCcCCCHHHHHHHHHH--HHHHCcC
Confidence 355679999999887 6655 555554 6788884
No 171
>PRK12520 RNA polymerase sigma factor; Provisional
Probab=20.82 E-value=60 Score=23.60 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=9.2
Q ss_pred CCCHHHHHHHcCCCCC
Q psy9282 55 GMTLDEARDILDIKQL 70 (120)
Q Consensus 55 ~Ms~~EA~~ILgv~~~ 70 (120)
+||.+|..++||++..
T Consensus 147 g~s~~EIA~~lgis~~ 162 (191)
T PRK12520 147 ELETEEICQELQITAT 162 (191)
T ss_pred CCCHHHHHHHHCCCHH
Confidence 4555565556665554
No 172
>PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function. ; PDB: 1ZTD_A.
Probab=20.71 E-value=1.6e+02 Score=21.20 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=21.7
Q ss_pred ccCCCCHHHHHHHcC--CCCC----C--HHHHHHHHHHHHH
Q psy9282 52 LRTGMTLDEARDILD--IKQL----D--PKEIKQRYEFLFN 84 (120)
Q Consensus 52 ~~~~Ms~~EA~~ILg--v~~~----~--~~~Ik~~yr~L~~ 84 (120)
..+.||.+||-.||- ++++ + .+.|-+++-.|++
T Consensus 71 Leg~it~eEaveil~~nl~~dv~~fsrkke~ig~Ala~Ll~ 111 (120)
T PF11469_consen 71 LEGKITIEEAVEILKANLTEDVLHFSRKKEAIGKALAELLK 111 (120)
T ss_dssp HTTSS-HHHHHHHHHCT--GGGG-TTTHHHHHHHHHHHHHH
T ss_pred HhccccHHHHHHHHHhcCchhhcchhHHHHHHHHHHHHHHH
Confidence 577899999999985 4433 2 2667777776665
No 173
>PRK07500 rpoH2 RNA polymerase factor sigma-32; Reviewed
Probab=20.68 E-value=1.1e+02 Score=24.36 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHcCCCCCCH----HHHHHHHHHHHHhcCCC
Q psy9282 54 TGMTLDEARDILDIKQLDP----KEIKQRYEFLFNANDSS 89 (120)
Q Consensus 54 ~~Ms~~EA~~ILgv~~~~~----~~Ik~~yr~L~~~nhPD 89 (120)
.+||..|-.++||++..+- ....++-|..+..++|+
T Consensus 244 ~~~t~~EIa~~lgvs~~~V~q~~~~Al~kLr~~l~~~~~~ 283 (289)
T PRK07500 244 DGATLEALGEELGISKERVRQIEARALEKLRRALLSQSPE 283 (289)
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 6788999889999987742 33344444445444443
No 174
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=20.14 E-value=99 Score=16.62 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=16.2
Q ss_pred cCCCCHHHHHHHcCCCCCCH
Q psy9282 53 RTGMTLDEARDILDIKQLDP 72 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~~~ 72 (120)
..+||..+....||++..+-
T Consensus 24 ~~~~~~~~ia~~~~~s~~~i 43 (55)
T cd06171 24 GEGLSYEEIAEILGISRSTV 43 (55)
T ss_pred hcCCCHHHHHHHHCcCHHHH
Confidence 36699999999999887654
No 175
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=20.01 E-value=1.7e+02 Score=20.34 Aligned_cols=29 Identities=21% Similarity=0.154 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHcCCCCCCHHHHHHHHHHH
Q psy9282 54 TGMTLDEARDILDIKQLDPKEIKQRYEFL 82 (120)
Q Consensus 54 ~~Ms~~EA~~ILgv~~~~~~~Ik~~yr~L 82 (120)
..|+..+|.+|-++-|.+.+|++.-|-.+
T Consensus 63 ~~l~e~~a~~I~nL~P~~~dElrai~~~~ 91 (112)
T PRK14981 63 EKMKEKTAVKIADILPETRDELRAIFAKE 91 (112)
T ss_pred cCCCHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 35899999999999999999999888766
Done!