Query psy9282
Match_columns 120
No_of_seqs 143 out of 749
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 23:29:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9282.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9282hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2guz_B Mitochondrial import in 99.9 2.7E-27 9.2E-32 153.0 7.5 60 56-115 1-64 (65)
2 2guz_A Mitochondrial import in 99.8 3.1E-20 1.1E-24 120.4 8.3 64 47-110 2-67 (71)
3 1faf_A Large T antigen; J doma 99.6 2.1E-15 7.1E-20 99.5 6.4 63 55-117 7-72 (79)
4 1iur_A KIAA0730 protein; DNAJ 99.4 2E-13 6.8E-18 92.0 7.2 61 53-113 10-76 (88)
5 2yua_A Williams-beuren syndrom 99.3 2E-12 6.8E-17 87.9 6.9 62 51-112 9-75 (99)
6 2ys8_A RAB-related GTP-binding 99.3 2.1E-12 7.2E-17 86.6 6.5 57 59-115 27-87 (90)
7 2dn9_A DNAJ homolog subfamily 99.3 4.5E-12 1.5E-16 82.4 6.3 58 56-113 4-66 (79)
8 2ctr_A DNAJ homolog subfamily 99.3 5.4E-12 1.8E-16 84.0 5.6 57 56-112 4-64 (88)
9 2ctw_A DNAJ homolog subfamily 99.3 9.2E-12 3.1E-16 86.1 6.8 61 52-112 10-75 (109)
10 2o37_A Protein SIS1; HSP40, J- 99.3 8E-12 2.7E-16 83.8 6.1 56 57-112 6-63 (92)
11 2ctp_A DNAJ homolog subfamily 99.3 3.8E-12 1.3E-16 82.6 4.1 57 56-112 4-64 (78)
12 1gh6_A Large T antigen; tumor 99.3 3.9E-12 1.3E-16 89.4 4.3 58 58-115 7-67 (114)
13 1wjz_A 1700030A21RIK protein; 99.2 3.1E-12 1E-16 85.5 3.0 58 53-110 10-78 (94)
14 2och_A Hypothetical protein DN 99.2 2.4E-11 8.1E-16 78.0 7.0 54 60-113 9-64 (73)
15 2ej7_A HCG3 gene; HCG3 protein 99.2 1.1E-11 3.7E-16 81.0 4.8 54 59-112 9-68 (82)
16 2dmx_A DNAJ homolog subfamily 99.2 1.8E-11 6.2E-16 81.8 5.7 55 59-113 9-69 (92)
17 2cug_A Mkiaa0962 protein; DNAJ 99.2 2.8E-11 9.7E-16 80.4 6.6 54 59-112 17-74 (88)
18 2pf4_E Small T antigen; PP2A, 99.2 9.1E-12 3.1E-16 93.5 2.4 58 57-114 9-69 (174)
19 2ctq_A DNAJ homolog subfamily 99.1 5.9E-11 2E-15 82.2 6.2 57 56-112 17-78 (112)
20 1hdj_A Human HSP40, HDJ-1; mol 99.1 4.8E-11 1.6E-15 77.2 5.4 53 60-112 4-60 (77)
21 2lgw_A DNAJ homolog subfamily 99.1 1.6E-10 5.6E-15 78.8 7.2 53 60-112 3-61 (99)
22 2l6l_A DNAJ homolog subfamily 99.1 1.3E-10 4.4E-15 84.2 4.8 59 54-112 5-74 (155)
23 2qsa_A DNAJ homolog DNJ-2; J-d 99.1 1.8E-10 6.1E-15 79.2 5.3 55 59-113 15-78 (109)
24 1bq0_A DNAJ, HSP40; chaperone, 99.0 1.2E-10 4.2E-15 79.4 1.1 54 60-113 4-62 (103)
25 2qwo_B Putative tyrosine-prote 99.0 1.9E-10 6.4E-15 78.3 2.0 49 61-109 35-91 (92)
26 3apq_A DNAJ homolog subfamily 98.9 2E-09 6.8E-14 79.3 5.2 53 60-112 3-60 (210)
27 3ag7_A Putative uncharacterize 98.8 9.6E-10 3.3E-14 76.1 1.5 49 61-109 43-102 (106)
28 3lz8_A Putative chaperone DNAJ 98.8 5.3E-10 1.8E-14 90.5 0.0 61 53-113 22-86 (329)
29 3hho_A CO-chaperone protein HS 98.8 8.3E-09 2.8E-13 76.6 5.4 53 60-112 5-69 (174)
30 1fpo_A HSC20, chaperone protei 98.7 1.3E-08 4.5E-13 75.4 5.3 52 61-112 3-66 (171)
31 1n4c_A Auxilin; four helix bun 98.7 3.7E-09 1.3E-13 79.8 1.8 54 59-112 117-178 (182)
32 3bvo_A CO-chaperone protein HS 98.6 3.4E-08 1.2E-12 75.3 5.9 54 59-112 43-108 (207)
33 3uo3_A J-type CO-chaperone JAC 98.4 1E-07 3.5E-12 71.4 3.1 53 60-112 12-73 (181)
34 3apo_A DNAJ homolog subfamily 98.3 1.5E-07 5E-12 81.2 1.5 57 57-113 19-80 (780)
35 2y4t_A DNAJ homolog subfamily 96.7 0.00086 3E-08 51.4 3.1 52 61-112 384-443 (450)
36 2jpc_A SSRB; DNA binding prote 49.1 8.2 0.00028 21.9 1.6 30 53-82 11-41 (61)
37 2lr8_A CAsp8-associated protei 51.2 4.5 0.00015 25.8 0.0 20 71-90 49-68 (70)
38 3hug_A RNA polymerase sigma fa 44.2 13 0.00045 23.1 2.2 20 52-71 50-69 (92)
39 1ug2_A 2610100B20RIK gene prod 43.5 11 0.00039 25.2 1.8 19 71-89 69-87 (95)
40 2ou3_A Tellurite resistance pr 42.2 10 0.00035 26.4 1.5 36 58-95 119-161 (161)
41 2i8b_A Minor nucleoprotein VP3 41.9 13 0.00043 26.6 1.9 21 72-96 84-104 (152)
42 2o8x_A Probable RNA polymerase 41.3 16 0.00056 20.9 2.2 31 52-82 28-59 (70)
43 1je8_A Nitrate/nitrite respons 39.6 14 0.00047 22.8 1.7 30 53-82 34-64 (82)
44 1tc3_C Protein (TC3 transposas 39.1 5.9 0.0002 20.8 -0.2 20 53-72 19-38 (51)
45 1ku3_A Sigma factor SIGA; heli 39.1 19 0.00064 21.4 2.2 30 54-83 29-59 (73)
46 3c57_A Two component transcrip 38.2 19 0.00063 22.8 2.2 31 53-83 40-71 (95)
47 2p1m_A SKP1-like protein 1A; F 38.2 37 0.0013 23.7 4.0 27 54-80 126-156 (160)
48 1x3u_A Transcriptional regulat 37.5 17 0.00057 21.5 1.8 32 53-87 29-60 (79)
49 2p7v_B Sigma-70, RNA polymeras 37.5 14 0.00047 21.7 1.4 30 53-82 23-53 (68)
50 1fse_A GERE; helix-turn-helix 36.4 22 0.00076 20.6 2.2 30 53-82 24-54 (74)
51 1j9i_A GPNU1 DBD;, terminase s 35.7 9.8 0.00034 22.7 0.5 17 56-72 3-19 (68)
52 4a5u_B 30S ribosomal protein S 35.6 45 0.0015 21.8 3.8 33 87-119 17-50 (88)
53 3v7d_A Suppressor of kinetocho 35.4 1E+02 0.0035 21.7 6.0 47 5-72 106-153 (169)
54 1tty_A Sigma-A, RNA polymerase 35.2 24 0.00082 21.8 2.3 30 54-83 37-67 (87)
55 1pdo_A Mannose permease; phosp 33.9 58 0.002 21.9 4.3 32 65-96 33-74 (135)
56 2ast_A S-phase kinase-associat 33.3 1.2E+02 0.004 20.9 6.7 25 54-78 127-155 (159)
57 3t72_q RNA polymerase sigma fa 31.8 32 0.0011 22.4 2.6 32 54-85 38-70 (99)
58 2lfw_A PHYR sigma-like domain; 31.2 33 0.0011 23.1 2.7 35 52-86 106-141 (157)
59 2cqr_A RSGI RUH-043, DNAJ homo 31.1 67 0.0023 19.9 3.9 14 71-84 55-68 (73)
60 3ulq_B Transcriptional regulat 30.3 23 0.0008 22.4 1.7 29 54-82 43-72 (90)
61 2rnj_A Response regulator prot 30.1 14 0.00048 23.0 0.5 30 53-82 42-72 (91)
62 1p4w_A RCSB; solution structur 30.1 29 0.00098 22.5 2.1 30 53-82 47-77 (99)
63 2ket_A Cathelicidin-6; antimic 29.2 47 0.0016 16.9 2.4 17 73-89 4-20 (27)
64 3mzy_A RNA polymerase sigma-H 28.9 30 0.001 22.5 2.1 18 53-70 122-139 (164)
65 1xsv_A Hypothetical UPF0122 pr 27.6 47 0.0016 21.8 2.9 31 52-82 38-69 (113)
66 1l3l_A Transcriptional activat 26.7 34 0.0012 24.7 2.2 30 53-82 186-216 (234)
67 2q0o_A Probable transcriptiona 26.5 34 0.0012 24.7 2.2 30 53-82 188-218 (236)
68 3e02_A Uncharacterized protein 25.2 34 0.0012 27.0 2.1 18 53-70 289-306 (311)
69 3e49_A Uncharacterized protein 25.2 34 0.0012 27.0 2.1 18 53-70 289-306 (311)
70 1s7o_A Hypothetical UPF0122 pr 25.1 39 0.0013 22.3 2.1 30 53-82 36-66 (113)
71 2y7e_A 3-keto-5-aminohexanoate 24.6 34 0.0012 26.7 1.9 16 53-68 266-281 (282)
72 1i2t_A HYD protein; four alpha 24.4 68 0.0023 19.5 2.9 17 94-110 44-60 (61)
73 3lot_A Uncharacterized protein 24.1 33 0.0011 27.1 1.8 18 53-70 292-309 (314)
74 3lfh_A Manxa, phosphotransfera 24.1 1.8E+02 0.006 19.9 6.3 27 71-97 42-78 (144)
75 2cqq_A RSGI RUH-037, DNAJ homo 24.0 65 0.0022 19.9 2.9 22 70-91 43-64 (72)
76 3no5_A Uncharacterized protein 23.0 38 0.0013 26.2 1.9 15 53-67 260-274 (275)
77 1pdn_C Protein (PRD paired); p 22.7 46 0.0016 20.8 2.0 28 54-81 32-59 (128)
78 3chv_A Prokaryotic domain of u 22.3 45 0.0015 26.0 2.2 17 53-69 264-280 (284)
79 2elh_A CG11849-PA, LD40883P; s 22.2 1E+02 0.0035 18.8 3.6 34 54-87 37-70 (87)
80 1or7_A Sigma-24, RNA polymeras 21.7 51 0.0017 22.3 2.2 19 53-71 154-172 (194)
81 1ztd_A Hypothetical protein PF 21.7 1.1E+02 0.0038 21.2 3.9 34 52-85 82-123 (133)
82 3v7o_A Minor nucleoprotein VP3 21.7 45 0.0015 25.6 2.0 20 73-96 160-179 (227)
83 3c6c_A 3-keto-5-aminohexanoate 21.4 41 0.0014 26.7 1.8 17 53-69 298-314 (316)
84 1y6u_A XIS, excisionase from t 21.2 32 0.0011 21.2 1.0 27 53-86 14-40 (70)
85 2cjj_A Radialis; plant develop 21.1 1.4E+02 0.0047 19.3 4.1 15 71-85 45-59 (93)
86 1rp3_A RNA polymerase sigma fa 20.8 55 0.0019 22.7 2.3 19 53-71 201-219 (239)
87 3szt_A QCSR, quorum-sensing co 20.7 42 0.0014 24.4 1.7 30 53-82 188-218 (237)
No 1
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.7e-27 Score=153.04 Aligned_cols=60 Identities=48% Similarity=0.800 Sum_probs=56.4
Q ss_pred CCHHHHHHHcCCCCC----CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhh
Q psy9282 56 MTLDEARDILDIKQL----DPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEVKKVS 115 (120)
Q Consensus 56 Ms~~EA~~ILgv~~~----~~~~Ik~~yr~L~~~nhPDkgGS~yl~~ki~~A~e~L~~~~~~~~ 115 (120)
||++||++||||++. +.++|+++||+||..||||+||||||++|||+|+|+|+.++...+
T Consensus 1 mt~~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~yl~~ki~~Ake~l~~~~~~~~ 64 (65)
T 2guz_B 1 MTLDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKWELAQRE 64 (65)
T ss_dssp CCHHHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 899999999999987 569999999999999999999999999999999999999987653
No 2
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.82 E-value=3.1e-20 Score=120.39 Aligned_cols=64 Identities=25% Similarity=0.378 Sum_probs=59.5
Q ss_pred cccccccCCCCHHHHHHHcCCCC-C-CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHH
Q psy9282 47 QASENLRTGMTLDEARDILDIKQ-L-DPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQE 110 (120)
Q Consensus 47 ~~~~~~~~~Ms~~EA~~ILgv~~-~-~~~~Ik~~yr~L~~~nhPDkgGS~yl~~ki~~A~e~L~~~ 110 (120)
++.++|...|+.+||++||||++ . +.++|+++||+|++.+|||+||+++.+++|++||++|.+.
T Consensus 2 ~~~g~~~~~m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~~~~f~~i~~Aye~L~~~ 67 (71)
T 2guz_A 2 FLKGGFDPKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLEKR 67 (71)
T ss_dssp CCCSCCCSSCCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhhh
Confidence 45678999999999999999997 4 6799999999999999999999999999999999999875
No 3
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.59 E-value=2.1e-15 Score=99.53 Aligned_cols=63 Identities=16% Similarity=0.167 Sum_probs=56.0
Q ss_pred CCCHHHHHHHcCCCCC---CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhCC
Q psy9282 55 GMTLDEARDILDIKQL---DPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEVKKVSGD 117 (120)
Q Consensus 55 ~Ms~~EA~~ILgv~~~---~~~~Ik~~yr~L~~~nhPDkgGS~yl~~ki~~A~e~L~~~~~~~~~~ 117 (120)
.+...++++||||++. +.++|+++||+|.+.+|||++|++..+.+|++||++|.+.+.....+
T Consensus 7 ~~~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~~~~f~~i~~AYe~L~~~~~r~~~~ 72 (79)
T 1faf_A 7 RADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLRMN 72 (79)
T ss_dssp HHHHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred chhHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 3566789999999987 46999999999999999999999999999999999999987766544
No 4
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.45 E-value=2e-13 Score=92.01 Aligned_cols=61 Identities=13% Similarity=0.111 Sum_probs=54.3
Q ss_pred cCCCCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCC-----HHHHHHHHHHHHHHHHHHhh
Q psy9282 53 RTGMTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGS-----FYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS-----~yl~~ki~~A~e~L~~~~~~ 113 (120)
-..|+..|+++||||++. +.++|+++||+|.+.+|||++++ ...+.+|++||++|.+....
T Consensus 10 ~~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 10 PRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL 76 (88)
T ss_dssp CSSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccc
Confidence 356899999999999988 56999999999999999999765 57899999999999998754
No 5
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=2e-12 Score=87.88 Aligned_cols=62 Identities=10% Similarity=0.038 Sum_probs=53.7
Q ss_pred cccCCCCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHHHHHHh
Q psy9282 51 NLRTGMTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGS----FYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 51 ~~~~~Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS----~yl~~ki~~A~e~L~~~~~ 112 (120)
.....|+..+.+.||||++. +.++|+++||+|++..|||+.+. ...+.+|++||++|.+...
T Consensus 9 ~~~~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~ 75 (99)
T 2yua_A 9 QGDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATL 75 (99)
T ss_dssp CCCCSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHH
T ss_pred CCCCCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHH
Confidence 44567888999999999988 57999999999999999999764 6789999999999976544
No 6
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=2.1e-12 Score=86.60 Aligned_cols=57 Identities=23% Similarity=0.244 Sum_probs=50.9
Q ss_pred HHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCC---CCHHHHHHHHHHHHHHHHHHhhhh
Q psy9282 59 DEARDILDIKQL-DPKEIKQRYEFLFNANDSSKG---GSFYIQSKVVRAKERIDQEVKKVS 115 (120)
Q Consensus 59 ~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkg---GS~yl~~ki~~A~e~L~~~~~~~~ 115 (120)
.+.++||||++. +.++|+++||+|++.+|||+. +....+.+|++||++|.+..+...
T Consensus 27 ~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 27 KDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp SSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccC
Confidence 568999999988 579999999999999999997 778999999999999998876543
No 7
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=4.5e-12 Score=82.37 Aligned_cols=58 Identities=24% Similarity=0.224 Sum_probs=49.7
Q ss_pred CCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHHHHHHhh
Q psy9282 56 MTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGS----FYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 56 Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS----~yl~~ki~~A~e~L~~~~~~ 113 (120)
++....+.||||++. +.++|+++||+|++..|||+.++ ...+.+|++||++|.+....
T Consensus 4 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R 66 (79)
T 2dn9_A 4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKR 66 (79)
T ss_dssp SCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHH
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHH
Confidence 455578999999988 57999999999999999999764 57889999999999875543
No 8
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=5.4e-12 Score=83.96 Aligned_cols=57 Identities=18% Similarity=0.163 Sum_probs=48.8
Q ss_pred CCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHHHHHHh
Q psy9282 56 MTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGS---FYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 56 Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS---~yl~~ki~~A~e~L~~~~~ 112 (120)
++....++||||++. +.++|+++||+|++..|||+.++ ...+.+|++||++|.+...
T Consensus 4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~ 64 (88)
T 2ctr_A 4 GSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANR 64 (88)
T ss_dssp CCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHH
T ss_pred CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHH
Confidence 344578999999988 67999999999999999999887 4688899999999976443
No 9
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.27 E-value=9.2e-12 Score=86.09 Aligned_cols=61 Identities=13% Similarity=0.114 Sum_probs=51.7
Q ss_pred ccCCCCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHHHHHHh
Q psy9282 52 LRTGMTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGS----FYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 52 ~~~~Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS----~yl~~ki~~A~e~L~~~~~ 112 (120)
....++....++||||++. +.++|+++||+|.+..|||+.+. ...+.+|++||++|.+..+
T Consensus 10 r~~~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~ 75 (109)
T 2ctw_A 10 RSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATK 75 (109)
T ss_dssp CCTTSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHH
T ss_pred cccCCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHH
Confidence 3445666789999999988 67999999999999999999765 5788999999999976544
No 10
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.26 E-value=8e-12 Score=83.85 Aligned_cols=56 Identities=18% Similarity=0.178 Sum_probs=49.7
Q ss_pred CHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHHHHHHHHh
Q psy9282 57 TLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKG-GSFYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 57 s~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkg-GS~yl~~ki~~A~e~L~~~~~ 112 (120)
.....++||||++. +.++|+++|++|++..|||+. ++...+.+|++||++|.+..+
T Consensus 6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~ 63 (92)
T 2o37_A 6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQK 63 (92)
T ss_dssp SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHH
T ss_pred cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHH
Confidence 44579999999988 679999999999999999995 789999999999999976544
No 11
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=3.8e-12 Score=82.64 Aligned_cols=57 Identities=14% Similarity=0.092 Sum_probs=49.3
Q ss_pred CCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHHHHHHHHh
Q psy9282 56 MTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG---SFYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 56 Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG---S~yl~~ki~~A~e~L~~~~~ 112 (120)
++..+.+.||||++. +.++|+++|++|++..|||+.+ +...+.+|++||++|.+...
T Consensus 4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~ 64 (78)
T 2ctp_A 4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEK 64 (78)
T ss_dssp SCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHH
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHH
Confidence 555678999999988 5699999999999999999974 46789999999999976544
No 12
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.25 E-value=3.9e-12 Score=89.39 Aligned_cols=58 Identities=16% Similarity=0.125 Sum_probs=51.7
Q ss_pred HHHHHHHcCCCCC-CH--HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhh
Q psy9282 58 LDEARDILDIKQL-DP--KEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEVKKVS 115 (120)
Q Consensus 58 ~~EA~~ILgv~~~-~~--~~Ik~~yr~L~~~nhPDkgGS~yl~~ki~~A~e~L~~~~~~~~ 115 (120)
....+.||||++. +. ++|+++||+|.+..|||++|+...+.+|++||++|....+...
T Consensus 7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~~e~f~~I~~AYevL~d~~~R~~ 67 (114)
T 1gh6_A 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAH 67 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHHHHHSCC
T ss_pred hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHHCCHHHHHH
Confidence 3578999999987 45 8999999999999999999999999999999999998776543
No 13
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.23 E-value=3.1e-12 Score=85.52 Aligned_cols=58 Identities=16% Similarity=0.125 Sum_probs=50.2
Q ss_pred cCCCCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC----------CHHHHHHHHHHHHHHHHH
Q psy9282 53 RTGMTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG----------SFYIQSKVVRAKERIDQE 110 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG----------S~yl~~ki~~A~e~L~~~ 110 (120)
...|+....++||||++. +.++|+++||+|++..|||+.. ....+.+|++||++|.+.
T Consensus 10 ~~~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~ 78 (94)
T 1wjz_A 10 LEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78 (94)
T ss_dssp CSSSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred cccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCH
Confidence 455788899999999988 5799999999999999999943 457899999999999753
No 14
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.23 E-value=2.4e-11 Score=78.05 Aligned_cols=54 Identities=20% Similarity=0.203 Sum_probs=47.5
Q ss_pred HHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHHHHHHHhh
Q psy9282 60 EARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG-SFYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 60 EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG-S~yl~~ki~~A~e~L~~~~~~ 113 (120)
..+.||||++. +.++|+++|++|+...|||+++ ....+.+|++||++|.+....
T Consensus 9 ~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R 64 (73)
T 2och_A 9 GYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKR 64 (73)
T ss_dssp CHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHH
T ss_pred CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHH
Confidence 58999999988 5799999999999999999965 478999999999999765543
No 15
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=1.1e-11 Score=81.05 Aligned_cols=54 Identities=20% Similarity=0.182 Sum_probs=46.7
Q ss_pred HHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCCH-----HHHHHHHHHHHHHHHHHh
Q psy9282 59 DEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGSF-----YIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 59 ~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS~-----yl~~ki~~A~e~L~~~~~ 112 (120)
...+.||||++. +.++|+++|++|++..|||+.++. ..+.+|++||++|.+...
T Consensus 9 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~ 68 (82)
T 2ej7_A 9 VDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKK 68 (82)
T ss_dssp CCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTH
T ss_pred cCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHH
Confidence 478999999988 679999999999999999997653 578999999999976433
No 16
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=1.8e-11 Score=81.79 Aligned_cols=55 Identities=20% Similarity=0.200 Sum_probs=47.7
Q ss_pred HHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCC-----HHHHHHHHHHHHHHHHHHhh
Q psy9282 59 DEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGS-----FYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 59 ~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS-----~yl~~ki~~A~e~L~~~~~~ 113 (120)
...++||||++. +.++|+++||+|++..|||+.++ ...+.+|++||++|.+....
T Consensus 9 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R 69 (92)
T 2dmx_A 9 ANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKR 69 (92)
T ss_dssp CCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred cCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHH
Confidence 468999999988 56999999999999999999765 46889999999999876543
No 17
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.21 E-value=2.8e-11 Score=80.43 Aligned_cols=54 Identities=19% Similarity=0.186 Sum_probs=47.5
Q ss_pred HHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHHHHHHHHh
Q psy9282 59 DEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG---SFYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 59 ~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG---S~yl~~ki~~A~e~L~~~~~ 112 (120)
...++||||++. +.++|+++||+|++..|||+.+ ....+.+|++||++|.+...
T Consensus 17 ~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~ 74 (88)
T 2cug_A 17 FDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEK 74 (88)
T ss_dssp SCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHH
T ss_pred CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHH
Confidence 478999999988 5799999999999999999975 46789999999999986544
No 18
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.15 E-value=9.1e-12 Score=93.49 Aligned_cols=58 Identities=16% Similarity=0.120 Sum_probs=48.9
Q ss_pred CHHHHHHHcCCCCC-C--HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhh
Q psy9282 57 TLDEARDILDIKQL-D--PKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEVKKV 114 (120)
Q Consensus 57 s~~EA~~ILgv~~~-~--~~~Ik~~yr~L~~~nhPDkgGS~yl~~ki~~A~e~L~~~~~~~ 114 (120)
...++++||||++. + .++|+++||+|.+..|||++|++..+.+|++||++|.+..+..
T Consensus 9 ~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~e~F~~I~~AYevLsdp~kR~ 69 (174)
T 2pf4_E 9 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYA 69 (174)
T ss_dssp HHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CCTTTTHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 34679999999987 3 4999999999999999999999999999999999998876653
No 19
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=5.9e-11 Score=82.25 Aligned_cols=57 Identities=16% Similarity=0.150 Sum_probs=49.8
Q ss_pred CCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHHHHHHh
Q psy9282 56 MTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGS----FYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 56 Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS----~yl~~ki~~A~e~L~~~~~ 112 (120)
+.....++||||++. +.++|+++||+|.+..|||+.+. ...+.+|++||++|.+..+
T Consensus 17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~ 78 (112)
T 2ctq_A 17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEES 78 (112)
T ss_dssp CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHH
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHH
Confidence 455789999999988 57999999999999999999774 6889999999999976544
No 20
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.15 E-value=4.8e-11 Score=77.20 Aligned_cols=53 Identities=15% Similarity=0.102 Sum_probs=46.1
Q ss_pred HHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHHHHHHHHh
Q psy9282 60 EARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG---SFYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 60 EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG---S~yl~~ki~~A~e~L~~~~~ 112 (120)
..+.||||++. +.++|+++|++|+...|||+.+ +...+.+|++||++|.+...
T Consensus 4 ~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~ 60 (77)
T 1hdj_A 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRK 60 (77)
T ss_dssp CSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHH
Confidence 35899999988 5699999999999999999975 46889999999999976544
No 21
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.12 E-value=1.6e-10 Score=78.77 Aligned_cols=53 Identities=21% Similarity=0.167 Sum_probs=46.2
Q ss_pred HHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCC-----HHHHHHHHHHHHHHHHHHh
Q psy9282 60 EARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGS-----FYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 60 EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS-----~yl~~ki~~A~e~L~~~~~ 112 (120)
..++||||++. +.++|+++||+|+...|||+.++ ...+.+|++||++|.+..+
T Consensus 3 d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~ 61 (99)
T 2lgw_A 3 SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHK 61 (99)
T ss_dssp CHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHH
T ss_pred CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHH
Confidence 46899999988 67999999999999999999765 3688999999999977544
No 22
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.06 E-value=1.3e-10 Score=84.20 Aligned_cols=59 Identities=17% Similarity=0.135 Sum_probs=49.9
Q ss_pred CCCCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCCH----------HHHHHHHHHHHHHHHHHh
Q psy9282 54 TGMTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGSF----------YIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 54 ~~Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS~----------yl~~ki~~A~e~L~~~~~ 112 (120)
+.|+....+.||||++. +.++|+++||+|.+..|||+.++. ..+.+|++||++|.+..+
T Consensus 5 ~~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~ 74 (155)
T 2l6l_A 5 EQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEET 74 (155)
T ss_dssp CCCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHH
T ss_pred ccCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 34666789999999988 579999999999999999996543 788999999999975443
No 23
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.06 E-value=1.8e-10 Score=79.15 Aligned_cols=55 Identities=15% Similarity=0.242 Sum_probs=47.8
Q ss_pred HHHHHHcCCCCC--CHHHHHHHHHHHHHhcCCCCCCC-------HHHHHHHHHHHHHHHHHHhh
Q psy9282 59 DEARDILDIKQL--DPKEIKQRYEFLFNANDSSKGGS-------FYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 59 ~EA~~ILgv~~~--~~~~Ik~~yr~L~~~nhPDkgGS-------~yl~~ki~~A~e~L~~~~~~ 113 (120)
...+.||||++. +.++|+++||+|....|||+.++ ...+.+|++||++|.+..+.
T Consensus 15 ~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R 78 (109)
T 2qsa_A 15 ENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAK 78 (109)
T ss_dssp SCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred CCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHH
Confidence 468999999986 45999999999999999999876 57899999999999865543
No 24
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=98.95 E-value=1.2e-10 Score=79.37 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=46.1
Q ss_pred HHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHHHHHHhh
Q psy9282 60 EARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGS----FYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 60 EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS----~yl~~ki~~A~e~L~~~~~~ 113 (120)
..++||||++. +.++|+++||+|++..|||+.++ ...+.+|++||++|.+..+.
T Consensus 4 ~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R 62 (103)
T 1bq0_A 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62 (103)
T ss_dssp CSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHH
T ss_pred CHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHH
Confidence 46889999988 57999999999999999999764 46889999999999765443
No 25
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=98.95 E-value=1.9e-10 Score=78.30 Aligned_cols=49 Identities=16% Similarity=0.220 Sum_probs=42.5
Q ss_pred HHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCC-CC------HHHHHHHHHHHHHHHH
Q psy9282 61 ARDILDIKQL-DPKEIKQRYEFLFNANDSSKG-GS------FYIQSKVVRAKERIDQ 109 (120)
Q Consensus 61 A~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkg-GS------~yl~~ki~~A~e~L~~ 109 (120)
-+++|||++. +.++|+++||+|...+|||+. |. ...|..|++|||+|.+
T Consensus 35 ~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 35 KWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp SCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 4899999988 679999999999999999994 33 3578999999999975
No 26
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=98.87 E-value=2e-09 Score=79.31 Aligned_cols=53 Identities=21% Similarity=0.173 Sum_probs=45.5
Q ss_pred HHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC----CHHHHHHHHHHHHHHHHHHh
Q psy9282 60 EARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG----SFYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 60 EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG----S~yl~~ki~~A~e~L~~~~~ 112 (120)
..+.||||++. +.++|+++||+|.+..|||+.+ ....+.+|++||++|.+...
T Consensus 3 ~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~ 60 (210)
T 3apq_A 3 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDL 60 (210)
T ss_dssp CHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHH
T ss_pred CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHH
Confidence 46899999988 5799999999999999999974 25678899999999976544
No 27
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=98.81 E-value=9.6e-10 Score=76.13 Aligned_cols=49 Identities=10% Similarity=0.150 Sum_probs=42.0
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHHhcCCCC----CCC-------HHHHHHHHHHHHHHHH
Q psy9282 61 ARDILDIKQLDPKEIKQRYEFLFNANDSSK----GGS-------FYIQSKVVRAKERIDQ 109 (120)
Q Consensus 61 A~~ILgv~~~~~~~Ik~~yr~L~~~nhPDk----gGS-------~yl~~ki~~A~e~L~~ 109 (120)
-+.|||++..+.++||++||+|...+|||+ |.+ ...|.+|++||++|.+
T Consensus 43 ~Y~vl~~~~As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd 102 (106)
T 3ag7_A 43 WKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNT 102 (106)
T ss_dssp CCCCCGGGSCSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcC
Confidence 467899987678999999999999999998 334 5678999999999965
No 28
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=98.80 E-value=5.3e-10 Score=90.45 Aligned_cols=61 Identities=21% Similarity=0.224 Sum_probs=0.0
Q ss_pred cCCCCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHHHHHHHHhh
Q psy9282 53 RTGMTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG---SFYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG---S~yl~~ki~~A~e~L~~~~~~ 113 (120)
...|+..+.++||||+++ +.++|+++||+|.+.+|||+.. ....+.+|++||++|.+..+.
T Consensus 22 ~~~m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R 86 (329)
T 3lz8_A 22 SNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRR 86 (329)
T ss_dssp -----------------------------------------------------------------
T ss_pred cccccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhh
Confidence 456899999999999998 5699999999999999999854 367889999999999875443
No 29
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=98.76 E-value=8.3e-09 Score=76.61 Aligned_cols=53 Identities=6% Similarity=0.100 Sum_probs=44.7
Q ss_pred HHHHHcCCCCC-C--HHHHHHHHHHHHHhcCCCCCC--C-------HHHHHHHHHHHHHHHHHHh
Q psy9282 60 EARDILDIKQL-D--PKEIKQRYEFLFNANDSSKGG--S-------FYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 60 EA~~ILgv~~~-~--~~~Ik~~yr~L~~~nhPDkgG--S-------~yl~~ki~~A~e~L~~~~~ 112 (120)
..+.||||++. + .++|+++||+|...+|||+.+ + ...+.+|++||++|.+...
T Consensus 5 d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~ 69 (174)
T 3hho_A 5 NYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLR 69 (174)
T ss_dssp CHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHH
T ss_pred CHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHH
Confidence 46899999987 4 799999999999999999943 2 2578999999999977544
No 30
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=98.72 E-value=1.3e-08 Score=75.40 Aligned_cols=52 Identities=12% Similarity=0.115 Sum_probs=43.8
Q ss_pred HHHHcCCCCC---CHHHHHHHHHHHHHhcCCCCCC--CH-------HHHHHHHHHHHHHHHHHh
Q psy9282 61 ARDILDIKQL---DPKEIKQRYEFLFNANDSSKGG--SF-------YIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 61 A~~ILgv~~~---~~~~Ik~~yr~L~~~nhPDkgG--S~-------yl~~ki~~A~e~L~~~~~ 112 (120)
.+.||||++. +.++|+++||+|....|||+.+ +. ..+.+|++||++|.+...
T Consensus 3 ~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~ 66 (171)
T 1fpo_A 3 YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLM 66 (171)
T ss_dssp HHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence 5899999987 5799999999999999999943 22 478999999999986444
No 31
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=98.70 E-value=3.7e-09 Score=79.76 Aligned_cols=54 Identities=13% Similarity=0.171 Sum_probs=46.1
Q ss_pred HHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC-C------HHHHHHHHHHHHHHHHHHh
Q psy9282 59 DEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG-S------FYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 59 ~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG-S------~yl~~ki~~A~e~L~~~~~ 112 (120)
+..++||||++. +.++|+++||+|.+..|||+.. . ...+.+|++||++|.+...
T Consensus 117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~k 178 (182)
T 1n4c_A 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQ 178 (182)
T ss_dssp CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHh
Confidence 357999999987 6799999999999999999943 2 3589999999999988654
No 32
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=98.65 E-value=3.4e-08 Score=75.34 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=44.4
Q ss_pred HHHHHHcCCCCC---CHHHHHHHHHHHHHhcCCCCCCC---------HHHHHHHHHHHHHHHHHHh
Q psy9282 59 DEARDILDIKQL---DPKEIKQRYEFLFNANDSSKGGS---------FYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 59 ~EA~~ILgv~~~---~~~~Ik~~yr~L~~~nhPDkgGS---------~yl~~ki~~A~e~L~~~~~ 112 (120)
...+.||||++. +.++|+++||+|....|||+.++ ...+.+|++||++|.+..+
T Consensus 43 ~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~ 108 (207)
T 3bvo_A 43 RDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLS 108 (207)
T ss_dssp CCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHH
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHH
Confidence 357999999985 57999999999999999999542 1356899999999986443
No 33
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=98.42 E-value=1e-07 Score=71.36 Aligned_cols=53 Identities=9% Similarity=0.168 Sum_probs=44.5
Q ss_pred HHHHHcC------CCC-C-CHHHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHHHHHHHh
Q psy9282 60 EARDILD------IKQ-L-DPKEIKQRYEFLFNANDSSKGG-SFYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 60 EA~~ILg------v~~-~-~~~~Ik~~yr~L~~~nhPDkgG-S~yl~~ki~~A~e~L~~~~~ 112 (120)
.-+.||| +.+ . +.++|+++||+|....|||+.+ +...+.+|++||++|.+...
T Consensus 12 d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~~ 73 (181)
T 3uo3_A 12 TFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLR 73 (181)
T ss_dssp CTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHHH
T ss_pred CHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChHH
Confidence 5689994 554 3 6799999999999999999966 77889999999999976543
No 34
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=98.30 E-value=1.5e-07 Score=81.21 Aligned_cols=57 Identities=19% Similarity=0.156 Sum_probs=30.2
Q ss_pred CHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC-C---HHHHHHHHHHHHHHHHHHhh
Q psy9282 57 TLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG-S---FYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 57 s~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG-S---~yl~~ki~~A~e~L~~~~~~ 113 (120)
.-...+.||||++. +.++|+++||+|.+..|||+.+ + ...+.+|++||++|.+..+.
T Consensus 19 ~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r 80 (780)
T 3apo_A 19 HDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 80 (780)
T ss_dssp ----CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHH
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHH
Confidence 33568999999998 5699999999999999999974 2 45788999999999875543
No 35
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=96.72 E-value=0.00086 Score=51.43 Aligned_cols=52 Identities=19% Similarity=0.075 Sum_probs=43.0
Q ss_pred HHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCCHH-------HHHHHHHHHHHHHHHHh
Q psy9282 61 ARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGSFY-------IQSKVVRAKERIDQEVK 112 (120)
Q Consensus 61 A~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS~y-------l~~ki~~A~e~L~~~~~ 112 (120)
.+.+||+... +.++|++.|+++....|||+..++. .+..|.+||++|.+.-+
T Consensus 384 ~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 384 YYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp SGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 4677888776 4699999999999999999987654 88899999999976544
No 36
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=49.09 E-value=8.2 Score=21.90 Aligned_cols=30 Identities=17% Similarity=0.047 Sum_probs=20.6
Q ss_pred cCCCCHHHHHHHcCCCCCCH-HHHHHHHHHH
Q psy9282 53 RTGMTLDEARDILDIKQLDP-KEIKQRYEFL 82 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~~~-~~Ik~~yr~L 82 (120)
..+||..|-...||+++.+- .-+.+.+++|
T Consensus 11 ~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 11 DEGYTNHGISEKLHISIKTVETHRMNMMRKL 41 (61)
T ss_dssp HTSCCSHHHHHHTCSCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 35689999999999977653 4444444444
No 37
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=51.21 E-value=4.5 Score=25.84 Aligned_cols=20 Identities=25% Similarity=0.607 Sum_probs=17.7
Q ss_pred CHHHHHHHHHHHHHhcCCCC
Q psy9282 71 DPKEIKQRYEFLFNANDSSK 90 (120)
Q Consensus 71 ~~~~Ik~~yr~L~~~nhPDk 90 (120)
++++|+.+|+.||...|..+
T Consensus 49 s~~QV~~RF~~Lm~Lf~kSk 68 (70)
T 2lr8_A 49 NPNQVSERFQQLMKLFEKSK 68 (70)
Confidence 67999999999999988754
No 38
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=44.25 E-value=13 Score=23.14 Aligned_cols=20 Identities=15% Similarity=0.086 Sum_probs=17.3
Q ss_pred ccCCCCHHHHHHHcCCCCCC
Q psy9282 52 LRTGMTLDEARDILDIKQLD 71 (120)
Q Consensus 52 ~~~~Ms~~EA~~ILgv~~~~ 71 (120)
+..+||..|..++||++..+
T Consensus 50 ~~~g~s~~eIA~~lgis~~t 69 (92)
T 3hug_A 50 YYRGWSTAQIATDLGIAEGT 69 (92)
T ss_dssp HTSCCCHHHHHHHHTSCHHH
T ss_pred HHcCCCHHHHHHHHCcCHHH
Confidence 46779999999999999774
No 39
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=43.52 E-value=11 Score=25.22 Aligned_cols=19 Identities=21% Similarity=0.443 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHHhcCCC
Q psy9282 71 DPKEIKQRYEFLFNANDSS 89 (120)
Q Consensus 71 ~~~~Ik~~yr~L~~~nhPD 89 (120)
++++|+.+|+.||...|..
T Consensus 69 s~nqV~~RFq~Lm~Lf~~~ 87 (95)
T 1ug2_A 69 TPVEVSHRFRELMQLFHTA 87 (95)
T ss_dssp CHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 5799999999999988753
No 40
>2ou3_A Tellurite resistance protein of COG3793; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE I3A; 1.85A {Nostoc punctiforme} SCOP: a.287.1.1
Probab=42.17 E-value=10 Score=26.44 Aligned_cols=36 Identities=25% Similarity=0.233 Sum_probs=19.6
Q ss_pred HHHHHHHcCCCCCCHHHHHHHH-------HHHHHhcCCCCCCCHH
Q psy9282 58 LDEARDILDIKQLDPKEIKQRY-------EFLFNANDSSKGGSFY 95 (120)
Q Consensus 58 ~~EA~~ILgv~~~~~~~Ik~~y-------r~L~~~nhPDkgGS~y 95 (120)
+++.+..|||++...+.|+..+ ++-+...-| ||+||
T Consensus 119 L~~iA~~Lgls~~~~~~l~~~~~~~~~~~~~r~~~~~~--~~~~~ 161 (161)
T 2ou3_A 119 IRKMATILGIKEEIVDQLEQLYYYEAALRQKRLNLLYP--QKSPY 161 (161)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHCS--SCCCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhccCC--CCCCC
Confidence 3456777888876433333222 222355566 67776
No 41
>2i8b_A Minor nucleoprotein VP30; VP30 ebola virus protein, transcription, RNA binding, viral; HET: MSE; 2.00A {Zaire ebolavirus}
Probab=41.90 E-value=13 Score=26.61 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCHHH
Q psy9282 72 PKEIKQRYEFLFNANDSSKGGSFYI 96 (120)
Q Consensus 72 ~~~Ik~~yr~L~~~nhPDkgGS~yl 96 (120)
.+-|++-|.+| |.||||+|+-
T Consensus 84 ~~~vlevYqrl----HsDKGG~FEA 104 (152)
T 2i8b_A 84 AEPVLEVYQRL----HSDKGGSFEA 104 (152)
T ss_dssp HHHHHHHHHHH----HTCSSSHHHH
T ss_pred chHHHHHHHHH----hcccCccHHH
Confidence 37788888876 8899999864
No 42
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=41.35 E-value=16 Score=20.91 Aligned_cols=31 Identities=10% Similarity=0.087 Sum_probs=20.9
Q ss_pred ccCCCCHHHHHHHcCCCCCCH-HHHHHHHHHH
Q psy9282 52 LRTGMTLDEARDILDIKQLDP-KEIKQRYEFL 82 (120)
Q Consensus 52 ~~~~Ms~~EA~~ILgv~~~~~-~~Ik~~yr~L 82 (120)
+..++|..|...+||+++.+- .-+.++.++|
T Consensus 28 ~~~g~s~~eIA~~lgis~~tv~~~~~ra~~~l 59 (70)
T 2o8x_A 28 QLLGLSYADAAAVCGCPVGTIRSRVARARDAL 59 (70)
T ss_dssp HTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 356799999999999987643 3334443333
No 43
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=39.64 E-value=14 Score=22.78 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=20.6
Q ss_pred cCCCCHHHHHHHcCCCCCCH-HHHHHHHHHH
Q psy9282 53 RTGMTLDEARDILDIKQLDP-KEIKQRYEFL 82 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~~~-~~Ik~~yr~L 82 (120)
..+||..|-.++||++..+- .-+.+.+++|
T Consensus 34 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL 64 (82)
T 1je8_A 34 AQGLPNKMIARRLDITESTVKVHVKHMLKKM 64 (82)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 46799999999999976543 3444444444
No 44
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=39.11 E-value=5.9 Score=20.81 Aligned_cols=20 Identities=10% Similarity=-0.006 Sum_probs=16.0
Q ss_pred cCCCCHHHHHHHcCCCCCCH
Q psy9282 53 RTGMTLDEARDILDIKQLDP 72 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~~~ 72 (120)
..+||..|..+.||++..+-
T Consensus 19 ~~g~s~~~IA~~lgis~~Tv 38 (51)
T 1tc3_C 19 LLNVSLHEMSRKISRSRHCI 38 (51)
T ss_dssp HTTCCHHHHHHHHTCCHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHH
Confidence 34689999999999986654
No 45
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=39.10 E-value=19 Score=21.35 Aligned_cols=30 Identities=13% Similarity=0.061 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHcCCCCCCH-HHHHHHHHHHH
Q psy9282 54 TGMTLDEARDILDIKQLDP-KEIKQRYEFLF 83 (120)
Q Consensus 54 ~~Ms~~EA~~ILgv~~~~~-~~Ik~~yr~L~ 83 (120)
.+||..|-.++||+++.+- .-+.++.++|-
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 5799999999999988764 44555555554
No 46
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=38.22 E-value=19 Score=22.81 Aligned_cols=31 Identities=13% Similarity=0.070 Sum_probs=22.3
Q ss_pred cCCCCHHHHHHHcCCCCCCH-HHHHHHHHHHH
Q psy9282 53 RTGMTLDEARDILDIKQLDP-KEIKQRYEFLF 83 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~~~-~~Ik~~yr~L~ 83 (120)
..+||..|-.++||++..+- .-+.+.+++|-
T Consensus 40 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 40 SEGLTNKQIADRMFLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 46799999999999977653 44555555553
No 47
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=38.18 E-value=37 Score=23.68 Aligned_cols=27 Identities=30% Similarity=0.539 Sum_probs=20.2
Q ss_pred CCCCHHHHHHHcCCCCC-CH---HHHHHHHH
Q psy9282 54 TGMTLDEARDILDIKQL-DP---KEIKQRYE 80 (120)
Q Consensus 54 ~~Ms~~EA~~ILgv~~~-~~---~~Ik~~yr 80 (120)
+++|++|-++++|+..+ ++ ++|++-+.
T Consensus 126 kgkt~eeir~~f~I~nd~t~eEe~~ir~en~ 156 (160)
T 2p1m_A 126 KGKTPEEIRTTFNIKNDFTPEEEEEVRRENQ 156 (160)
T ss_dssp TTCCHHHHHHHTTCCCCCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHcCCCCCCCHHHHHHHHHhCc
Confidence 46899999999999766 65 45666543
No 48
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=37.54 E-value=17 Score=21.54 Aligned_cols=32 Identities=13% Similarity=0.082 Sum_probs=21.7
Q ss_pred cCCCCHHHHHHHcCCCCCCHHHHHHHHHHHHHhcC
Q psy9282 53 RTGMTLDEARDILDIKQLDPKEIKQRYEFLFNAND 87 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~~~~~Ik~~yr~L~~~nh 87 (120)
..+||..|...+||++.. .|+.+.++......
T Consensus 29 ~~g~s~~eIA~~l~is~~---tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 29 VAGLPNKSIAYDLDISPR---TVEVHRANVMAKMK 60 (79)
T ss_dssp TTTCCHHHHHHHTTSCHH---HHHHHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHH---HHHHHHHHHHHHHc
Confidence 467999999999999764 44444444444443
No 49
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=37.53 E-value=14 Score=21.67 Aligned_cols=30 Identities=20% Similarity=0.186 Sum_probs=20.8
Q ss_pred cCCCCHHHHHHHcCCCCCCH-HHHHHHHHHH
Q psy9282 53 RTGMTLDEARDILDIKQLDP-KEIKQRYEFL 82 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~~~-~~Ik~~yr~L 82 (120)
..+||..|-.++||+++.+- .-+.++.++|
T Consensus 23 ~~g~s~~eIA~~lgis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDVTRERIRQIEAKALRKL 53 (68)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHHHHHHHGG
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 36799999999999987653 3344444443
No 50
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=36.44 E-value=22 Score=20.55 Aligned_cols=30 Identities=20% Similarity=0.084 Sum_probs=20.1
Q ss_pred cCCCCHHHHHHHcCCCCCCH-HHHHHHHHHH
Q psy9282 53 RTGMTLDEARDILDIKQLDP-KEIKQRYEFL 82 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~~~-~~Ik~~yr~L 82 (120)
..++|..|-.+.||+++.+- ..+.+.+++|
T Consensus 24 ~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl 54 (74)
T 1fse_A 24 VQDKTTKEIASELFISEKTVRNHISNAMQKL 54 (74)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 46789999999999976543 3344434443
No 51
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=35.67 E-value=9.8 Score=22.68 Aligned_cols=17 Identities=12% Similarity=0.077 Sum_probs=15.1
Q ss_pred CCHHHHHHHcCCCCCCH
Q psy9282 56 MTLDEARDILDIKQLDP 72 (120)
Q Consensus 56 Ms~~EA~~ILgv~~~~~ 72 (120)
||..|++++|||++.|.
T Consensus 3 lt~~e~a~~LgvS~~Tl 19 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTI 19 (68)
T ss_dssp EEHHHHHHHTTCCHHHH
T ss_pred cCHHHHHHHHCcCHHHH
Confidence 78899999999998765
No 52
>4a5u_B 30S ribosomal protein S15; transferase-RNA binding protein complex, cysteine proteinase; 2.00A {Escherichia coli} PDB: 1p6g_O 1p87_O 2ykr_O* 3j18_O 3oar_O 3oaq_O 3ofb_O 3ofa_O 3ofp_O 3ofx_O 3ofy_O 3ofo_O 3r8o_O 3r8n_O 4gd1_O 4gd2_O 3i1m_O 2qan_O* 2qb9_O* 2qbb_O* ...
Probab=35.65 E-value=45 Score=21.79 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=16.4
Q ss_pred CCCCCCCHHHHHHHHHHH-HHHHHHHhhhhCCCC
Q psy9282 87 DSSKGGSFYIQSKVVRAK-ERIDQEVKKVSGDYS 119 (120)
Q Consensus 87 hPDkgGS~yl~~ki~~A~-e~L~~~~~~~~~~~~ 119 (120)
||..-||++.|--+--++ ..|.++++....|.+
T Consensus 17 ~~~DTGS~EvQiA~LT~rI~~L~~Hlk~hkKD~~ 50 (88)
T 4a5u_B 17 DANDTGSTEVQVALLTAQINHLQGHFAEHKKDHH 50 (88)
T ss_dssp STTCTTCHHHHHHHHHHHHHHHHHHC--------
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHcccchh
Confidence 555577888777666665 456666665555443
No 53
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=35.37 E-value=1e+02 Score=21.69 Aligned_cols=47 Identities=17% Similarity=0.161 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCCCHHHHHHHcCCCCC-CH
Q psy9282 5 IIQIAVLGAQVVGRAFAKALRQEYAASQEAAKRAGGGRQGTAQASENLRTGMTLDEARDILDIKQL-DP 72 (120)
Q Consensus 5 ia~l~v~g~~~~gra~~~A~rqa~~~~~~a~~~~~~~~~~~~~~~~~~~~~Ms~~EA~~ILgv~~~-~~ 72 (120)
+..|+.++--+=.+.++..--+.+++. -+++|++|-+++||++.+ |+
T Consensus 106 LfeLi~AAnyLdIk~Lldl~c~~vA~~---------------------ikgktpeeiR~~f~I~nd~t~ 153 (169)
T 3v7d_A 106 LYEIILAANYLNIKPLLDAGCKVVAEM---------------------IRGRSPEEIRRTFNIVNDFTP 153 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------HTTCCHHHHHHHHTCCCCCCH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHH---------------------HcCCCHHHHHHHcCCCCCCCH
Confidence 455566555555566655554444331 245899999999999876 66
No 54
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=35.20 E-value=24 Score=21.78 Aligned_cols=30 Identities=13% Similarity=0.064 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHcCCCCCCH-HHHHHHHHHHH
Q psy9282 54 TGMTLDEARDILDIKQLDP-KEIKQRYEFLF 83 (120)
Q Consensus 54 ~~Ms~~EA~~ILgv~~~~~-~~Ik~~yr~L~ 83 (120)
.+||..|-..+||++..+- .-+.++.++|-
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr 67 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALRKLR 67 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHB
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 6799999999999988754 44555555553
No 55
>1pdo_A Mannose permease; phosphoenolpyruvate dependent phosphotransferase system, phosphotransferase; 1.70A {Escherichia coli} SCOP: c.54.1.1 PDB: 1vrc_A 1vsq_A* 2jzo_A 2jzn_A
Probab=33.88 E-value=58 Score=21.86 Aligned_cols=32 Identities=22% Similarity=0.405 Sum_probs=23.0
Q ss_pred cCCCCC-CHHHHHHHHHHHHHhcCCCC---------CCCHHH
Q psy9282 65 LDIKQL-DPKEIKQRYEFLFNANDSSK---------GGSFYI 96 (120)
Q Consensus 65 Lgv~~~-~~~~Ik~~yr~L~~~nhPDk---------gGS~yl 96 (120)
+++.+. +++++.++.+..+...+.+. ||||+-
T Consensus 33 i~~~~~~~~~~~~~~i~~~i~~~~~~~gvliLtDl~GGSp~n 74 (135)
T 1pdo_A 33 IDFVPGENAETLIEKYNAQLAKLDTTKGVLFLVDTWGGSPFN 74 (135)
T ss_dssp ECBCTTCCHHHHHHHHHHHHTTSCCTTCEEEEESSTTSHHHH
T ss_pred EEeeCCCCHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHH
Confidence 344433 56889999999998877633 799984
No 56
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=33.30 E-value=1.2e+02 Score=20.86 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=18.8
Q ss_pred CCCCHHHHHHHcCCCCC-CH---HHHHHH
Q psy9282 54 TGMTLDEARDILDIKQL-DP---KEIKQR 78 (120)
Q Consensus 54 ~~Ms~~EA~~ILgv~~~-~~---~~Ik~~ 78 (120)
+++|++|-++++|+..+ ++ ++|++-
T Consensus 127 ~gkt~eeir~~f~I~~d~t~eEe~~ir~e 155 (159)
T 2ast_A 127 KGKTPEEIRKTFNIKNDFTEEEEAQVRKE 155 (159)
T ss_dssp SSCCHHHHHHHTTCCCCSCTTHHHHHHHH
T ss_pred cCCCHHHHHHHcCCCCCCCHHHHHHHHHh
Confidence 45899999999999866 54 445543
No 57
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=31.79 E-value=32 Score=22.41 Aligned_cols=32 Identities=19% Similarity=0.154 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHcCCCCCCH-HHHHHHHHHHHHh
Q psy9282 54 TGMTLDEARDILDIKQLDP-KEIKQRYEFLFNA 85 (120)
Q Consensus 54 ~~Ms~~EA~~ILgv~~~~~-~~Ik~~yr~L~~~ 85 (120)
.+||.+|-.++||++..+- ..+.++.++|-..
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~ 70 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHP 70 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 6799999999999998754 4455555555433
No 58
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=31.18 E-value=33 Score=23.12 Aligned_cols=35 Identities=6% Similarity=0.166 Sum_probs=24.3
Q ss_pred ccCCCCHHHHHHHcCCCCCCH-HHHHHHHHHHHHhc
Q psy9282 52 LRTGMTLDEARDILDIKQLDP-KEIKQRYEFLFNAN 86 (120)
Q Consensus 52 ~~~~Ms~~EA~~ILgv~~~~~-~~Ik~~yr~L~~~n 86 (120)
+..+||..|..++||+++.+- ..+.++-++|-...
T Consensus 106 ~~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l 141 (157)
T 2lfw_A 106 AMEGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQT 141 (157)
T ss_dssp SSSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTS
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999988753 55555555554443
No 59
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=31.12 E-value=67 Score=19.93 Aligned_cols=14 Identities=21% Similarity=0.503 Sum_probs=11.6
Q ss_pred CHHHHHHHHHHHHH
Q psy9282 71 DPKEIKQRYEFLFN 84 (120)
Q Consensus 71 ~~~~Ik~~yr~L~~ 84 (120)
+..+++.+|..|+.
T Consensus 55 T~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 55 SKEDCIARYKLLVS 68 (73)
T ss_dssp CHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHH
Confidence 77999999998853
No 60
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=30.34 E-value=23 Score=22.37 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=20.0
Q ss_pred CCCCHHHHHHHcCCCCCCH-HHHHHHHHHH
Q psy9282 54 TGMTLDEARDILDIKQLDP-KEIKQRYEFL 82 (120)
Q Consensus 54 ~~Ms~~EA~~ILgv~~~~~-~~Ik~~yr~L 82 (120)
.+||..|-...||++..+- .-+++.|++|
T Consensus 43 ~G~s~~eIA~~L~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 43 KGFTNQEIADALHLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 5799999999999987543 4444444444
No 61
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=30.13 E-value=14 Score=23.01 Aligned_cols=30 Identities=13% Similarity=0.077 Sum_probs=20.0
Q ss_pred cCCCCHHHHHHHcCCCCCCH-HHHHHHHHHH
Q psy9282 53 RTGMTLDEARDILDIKQLDP-KEIKQRYEFL 82 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~~~-~~Ik~~yr~L 82 (120)
..+||..|-.++||++..+- .-+.+.+++|
T Consensus 42 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL 72 (91)
T 2rnj_A 42 AKGYSNQEIASASHITIKTVKTHVSNILSKL 72 (91)
T ss_dssp HTTCCTTHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 45799999999999976543 3344444443
No 62
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=30.08 E-value=29 Score=22.46 Aligned_cols=30 Identities=17% Similarity=0.079 Sum_probs=20.0
Q ss_pred cCCCCHHHHHHHcCCCCCCH-HHHHHHHHHH
Q psy9282 53 RTGMTLDEARDILDIKQLDP-KEIKQRYEFL 82 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~~~-~~Ik~~yr~L 82 (120)
..+||..|-.+.||++..+- .-+.+.+++|
T Consensus 47 ~~G~s~~EIA~~L~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 47 AEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 35799999999999976543 3344444443
No 63
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=29.17 E-value=47 Score=16.94 Aligned_cols=17 Identities=18% Similarity=0.448 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhcCCC
Q psy9282 73 KEIKQRYEFLFNANDSS 89 (120)
Q Consensus 73 ~~Ik~~yr~L~~~nhPD 89 (120)
...++.|++||+...|-
T Consensus 4 krfrkkfkklfkklspv 20 (27)
T 2ket_A 4 KRFRKKFKKLFKKLSPV 20 (27)
T ss_dssp HHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHhcCcc
Confidence 34678899999998883
No 64
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=28.89 E-value=30 Score=22.50 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=11.6
Q ss_pred cCCCCHHHHHHHcCCCCC
Q psy9282 53 RTGMTLDEARDILDIKQL 70 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~ 70 (120)
..+||..|-.++||++..
T Consensus 122 ~~g~s~~EIA~~lgis~~ 139 (164)
T 3mzy_A 122 IRGYSYREIATILSKNLK 139 (164)
T ss_dssp TTTCCHHHHHHHHTCCHH
T ss_pred HcCCCHHHHHHHHCCCHH
Confidence 456677777777776654
No 65
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=27.56 E-value=47 Score=21.76 Aligned_cols=31 Identities=13% Similarity=0.292 Sum_probs=21.9
Q ss_pred ccCCCCHHHHHHHcCCCCCCH-HHHHHHHHHH
Q psy9282 52 LRTGMTLDEARDILDIKQLDP-KEIKQRYEFL 82 (120)
Q Consensus 52 ~~~~Ms~~EA~~ILgv~~~~~-~~Ik~~yr~L 82 (120)
+..+||..|...+||+++.+- .-+.++.++|
T Consensus 38 ~~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kL 69 (113)
T 1xsv_A 38 YLEDYSLSEIADTFNVSRQAVYDNIRRTGDLV 69 (113)
T ss_dssp HTSCCCHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 456799999999999998753 3344444444
No 66
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=26.71 E-value=34 Score=24.69 Aligned_cols=30 Identities=17% Similarity=0.292 Sum_probs=21.5
Q ss_pred cCCCCHHHHHHHcCCCCCCH-HHHHHHHHHH
Q psy9282 53 RTGMTLDEARDILDIKQLDP-KEIKQRYEFL 82 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~~~-~~Ik~~yr~L 82 (120)
..++|..|-.++||+++.|- .-+++.++||
T Consensus 186 ~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl 216 (234)
T 1l3l_A 186 AVGKTMEEIADVEGVKYNSVRVKLREAMKRF 216 (234)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 45799999999999987653 4455555554
No 67
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=26.47 E-value=34 Score=24.69 Aligned_cols=30 Identities=13% Similarity=0.118 Sum_probs=21.8
Q ss_pred cCCCCHHHHHHHcCCCCCCH-HHHHHHHHHH
Q psy9282 53 RTGMTLDEARDILDIKQLDP-KEIKQRYEFL 82 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~~~-~~Ik~~yr~L 82 (120)
..++|..|-.++||+++.|- .-+++.++||
T Consensus 188 ~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl 218 (236)
T 2q0o_A 188 SKGKTASVTANLTGINARTVQHYLDKARAKL 218 (236)
T ss_dssp HTTCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 45799999999999987653 4455555555
No 68
>3e02_A Uncharacterized protein DUF849; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia xenovorans LB400}
Probab=25.25 E-value=34 Score=27.01 Aligned_cols=18 Identities=39% Similarity=0.285 Sum_probs=15.0
Q ss_pred cCCCCHHHHHHHcCCCCC
Q psy9282 53 RTGMTLDEARDILDIKQL 70 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~ 70 (120)
..-+|.+||++|||+...
T Consensus 289 r~vATp~EAR~iLgl~~~ 306 (311)
T 3e02_A 289 LDIATPDEARAMLKTKGA 306 (311)
T ss_dssp CCBCCHHHHHHHHTCCCG
T ss_pred CCCCCHHHHHHHhCCCcc
Confidence 456999999999999753
No 69
>3e49_A Uncharacterized protein DUF849 with A TIM barrel; structural genomics, joint center for structural genomics; HET: MSE; 1.75A {Burkholderia xenovorans LB400}
Probab=25.23 E-value=34 Score=27.00 Aligned_cols=18 Identities=28% Similarity=0.235 Sum_probs=15.0
Q ss_pred cCCCCHHHHHHHcCCCCC
Q psy9282 53 RTGMTLDEARDILDIKQL 70 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~ 70 (120)
..-+|.+||++|||+...
T Consensus 289 r~vATp~EAR~iLgl~~~ 306 (311)
T 3e49_A 289 LEVASPAEARTMLGLKGP 306 (311)
T ss_dssp CCBCCHHHHHHHHTCCCT
T ss_pred CCCCCHHHHHHHhCCCcc
Confidence 456999999999999754
No 70
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=25.06 E-value=39 Score=22.31 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=21.1
Q ss_pred cCCCCHHHHHHHcCCCCCCH-HHHHHHHHHH
Q psy9282 53 RTGMTLDEARDILDIKQLDP-KEIKQRYEFL 82 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~~~-~~Ik~~yr~L 82 (120)
..+||..|..++||+++.+- .-+.++.++|
T Consensus 36 ~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kL 66 (113)
T 1s7o_A 36 ADDYSLAEIADEFGVSRQAVYDNIKRTEKIL 66 (113)
T ss_dssp HTCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 46799999999999998753 3344444433
No 71
>2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A {Candidatus cloacamonas acidaminovoransorganism_taxid} PDB: 2y7d_A 2y7f_A* 2y7g_A
Probab=24.61 E-value=34 Score=26.69 Aligned_cols=16 Identities=38% Similarity=0.530 Sum_probs=12.9
Q ss_pred cCCCCHHHHHHHcCCC
Q psy9282 53 RTGMTLDEARDILDIK 68 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~ 68 (120)
+.-+|.+||++|||+.
T Consensus 266 r~vAtp~eAR~iLgl~ 281 (282)
T 2y7e_A 266 RPLATPEQAREILALN 281 (282)
T ss_dssp CCBCCHHHHHHHTTC-
T ss_pred CCCCCHHHHHHHhCCC
Confidence 3459999999999985
No 72
>1i2t_A HYD protein; four alpha-helical domain, ligase; 1.04A {Homo sapiens} SCOP: a.144.1.1 PDB: 3ntw_A
Probab=24.36 E-value=68 Score=19.50 Aligned_cols=17 Identities=24% Similarity=0.108 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9282 94 FYIQSKVVRAKERIDQE 110 (120)
Q Consensus 94 ~yl~~ki~~A~e~L~~~ 110 (120)
..|.+||.+|.++|..+
T Consensus 44 e~L~~kv~EA~~vl~~~ 60 (61)
T 1i2t_A 44 DSLRARVDEAMELIIAH 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 47999999999998754
No 73
>3lot_A Uncharacterized protein; protein of unknown function, structural genomics, joint CENT structural genomics, JCSG; HET: MSE; 1.89A {Archaeoglobus fulgidus}
Probab=24.12 E-value=33 Score=27.12 Aligned_cols=18 Identities=39% Similarity=0.505 Sum_probs=14.9
Q ss_pred cCCCCHHHHHHHcCCCCC
Q psy9282 53 RTGMTLDEARDILDIKQL 70 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~ 70 (120)
..-+|.+||++|||+...
T Consensus 292 r~vATp~EAR~iLgl~~~ 309 (314)
T 3lot_A 292 KRPATPDEVREILGLKGK 309 (314)
T ss_dssp CEECCHHHHHHHHTCCCG
T ss_pred CCCCCHHHHHHHhCCCCc
Confidence 446999999999999753
No 74
>3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis} SCOP: c.54.1.0
Probab=24.10 E-value=1.8e+02 Score=19.90 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHHhc-CCCC---------CCCHHHH
Q psy9282 71 DPKEIKQRYEFLFNAN-DSSK---------GGSFYIQ 97 (120)
Q Consensus 71 ~~~~Ik~~yr~L~~~n-hPDk---------gGS~yl~ 97 (120)
+++++.++++..+... ..+. ||||+-.
T Consensus 42 ~~~~~~~~i~~~i~~~~~~~~gvliLtDl~GGSp~n~ 78 (144)
T 3lfh_A 42 NIEVVRKEVEKIIKEKLQEDKEIIIVVDLFGGSPFNI 78 (144)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCEEEEEESSSSSHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCCCCcEEEEEeCCCCCHHHH
Confidence 5688999999988887 5433 8999843
No 75
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=23.99 E-value=65 Score=19.89 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHHHHHhcCCCCC
Q psy9282 70 LDPKEIKQRYEFLFNANDSSKG 91 (120)
Q Consensus 70 ~~~~~Ik~~yr~L~~~nhPDkg 91 (120)
.+.+||+++|+.|......+.|
T Consensus 43 Rt~~eV~~~y~~L~~d~~~~~G 64 (72)
T 2cqq_A 43 RSVTDVTTKAKQLKDSVTCSPG 64 (72)
T ss_dssp SCHHHHHHHHHHHHHSCCCCSC
T ss_pred CCHHHHHHHHHHHHHhcCccCC
Confidence 4789999999999888766644
No 76
>3no5_A Uncharacterized protein; PFAM DUF849 domain containing protein, structural genomics, center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha}
Probab=23.05 E-value=38 Score=26.24 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=12.9
Q ss_pred cCCCCHHHHHHHcCC
Q psy9282 53 RTGMTLDEARDILDI 67 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv 67 (120)
+.-+|.+||++|||+
T Consensus 260 r~vAtp~eAR~iLgl 274 (275)
T 3no5_A 260 RPVATAAQAREIMSL 274 (275)
T ss_dssp CCBCCHHHHHHHTTC
T ss_pred CCCCCHHHHHHHhCC
Confidence 456999999999997
No 77
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=22.70 E-value=46 Score=20.78 Aligned_cols=28 Identities=18% Similarity=0.135 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHcCCCCCCHHHHHHHHHH
Q psy9282 54 TGMTLDEARDILDIKQLDPKEIKQRYEF 81 (120)
Q Consensus 54 ~~Ms~~EA~~ILgv~~~~~~~Ik~~yr~ 81 (120)
.++|..|..+.||++..+-....++|+.
T Consensus 32 ~g~s~~~ia~~lgis~~Tv~~w~~~~~~ 59 (128)
T 1pdn_C 32 DGIRPCVISRQLRVSHGCVSKILNRYQE 59 (128)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 4689999999999987776666677765
No 78
>3chv_A Prokaryotic domain of unknown function (DUF849) W barrel fold; TIM barrel fold, structural genomics, joint center for struc genomics; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3} PDB: 3fa5_A
Probab=22.31 E-value=45 Score=26.01 Aligned_cols=17 Identities=29% Similarity=0.474 Sum_probs=14.2
Q ss_pred cCCCCHHHHHHHcCCCC
Q psy9282 53 RTGMTLDEARDILDIKQ 69 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~ 69 (120)
+.-+|.+||++|||+.+
T Consensus 264 r~vAtp~eAR~iLgl~~ 280 (284)
T 3chv_A 264 RPVASWQQAREILGLPA 280 (284)
T ss_dssp CCBCCHHHHHHHTTCCS
T ss_pred CCCCCHHHHHHHcCCCc
Confidence 34599999999999974
No 79
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=22.18 E-value=1e+02 Score=18.81 Aligned_cols=34 Identities=6% Similarity=-0.042 Sum_probs=24.2
Q ss_pred CCCCHHHHHHHcCCCCCCHHHHHHHHHHHHHhcC
Q psy9282 54 TGMTLDEARDILDIKQLDPKEIKQRYEFLFNAND 87 (120)
Q Consensus 54 ~~Ms~~EA~~ILgv~~~~~~~Ik~~yr~L~~~nh 87 (120)
.++|..|.+..|||++.+.-...+.|+..-...+
T Consensus 37 ~g~s~~~iA~~~gIs~sTl~rW~k~~~~~~~~~~ 70 (87)
T 2elh_A 37 DGESKASVARDIGVPESTLRGWCKNEDKLRFMSR 70 (87)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHhcccccc
Confidence 3478999999999977766666667776544443
No 80
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=21.73 E-value=51 Score=22.26 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=12.5
Q ss_pred cCCCCHHHHHHHcCCCCCC
Q psy9282 53 RTGMTLDEARDILDIKQLD 71 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~~ 71 (120)
..+||..|..++||+++.+
T Consensus 154 ~~g~s~~EIA~~lgis~~t 172 (194)
T 1or7_A 154 LDGLSYEEIAAIMDCPVGT 172 (194)
T ss_dssp TTCCCHHHHHHHTTSCHHH
T ss_pred HcCCCHHHHHHHHCCCHHH
Confidence 3467777777777776553
No 81
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2
Probab=21.68 E-value=1.1e+02 Score=21.24 Aligned_cols=34 Identities=18% Similarity=0.134 Sum_probs=24.4
Q ss_pred ccCCCCHHHHHHHcC--CCCC----C--HHHHHHHHHHHHHh
Q psy9282 52 LRTGMTLDEARDILD--IKQL----D--PKEIKQRYEFLFNA 85 (120)
Q Consensus 52 ~~~~Ms~~EA~~ILg--v~~~----~--~~~Ik~~yr~L~~~ 85 (120)
+.+.||.+||-+||- ++++ + .|-|-+++-.|+..
T Consensus 82 leG~is~eEaveilk~nl~~dv~hfsrkKE~iG~A~~~ll~~ 123 (133)
T 1ztd_A 82 LMGLISEREAVEIIKKNLYPEVLDFSKKKEAIGRALAPLLVI 123 (133)
T ss_dssp HTTSSCHHHHHHHHHTTCCGGGGCTTTHHHHHHHHHHHHHHH
T ss_pred HhccccHHHHHHHHHhcCcHhhcchhHHHHHHHHHHHHHHHH
Confidence 577899999999995 4443 2 26777777766654
No 82
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=21.67 E-value=45 Score=25.59 Aligned_cols=20 Identities=35% Similarity=0.594 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHH
Q psy9282 73 KEIKQRYEFLFNANDSSKGGSFYI 96 (120)
Q Consensus 73 ~~Ik~~yr~L~~~nhPDkgGS~yl 96 (120)
+-|.+-|.+| |.||||.|+-
T Consensus 160 ~~~~~~y~~~----h~dkgg~fea 179 (227)
T 3v7o_A 160 DSVLEVYQRL----HSDKGGNFEA 179 (227)
T ss_dssp HHHHHHHHHH----HTCCTTHHHH
T ss_pred hHHHHHHHHH----hccCCccHHH
Confidence 6688888776 8999999864
No 83
>3c6c_A 3-keto-5-aminohexanoate cleavage enzyme; DUF849 family protein, TIM beta/alpha-barrel fold, structura genomics; HET: MSE; 1.72A {Ralstonia eutropha}
Probab=21.40 E-value=41 Score=26.72 Aligned_cols=17 Identities=41% Similarity=0.538 Sum_probs=14.3
Q ss_pred cCCCCHHHHHHHcCCCC
Q psy9282 53 RTGMTLDEARDILDIKQ 69 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~ 69 (120)
+.-+|.+||++|||+..
T Consensus 298 r~vATp~eAR~iLgL~~ 314 (316)
T 3c6c_A 298 MSVATPDEARDIMGLSR 314 (316)
T ss_dssp CEECCHHHHHHHHTCCC
T ss_pred CCCCCHHHHHHHhCCCC
Confidence 35599999999999964
No 84
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=21.24 E-value=32 Score=21.18 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=19.4
Q ss_pred cCCCCHHHHHHHcCCCCCCHHHHHHHHHHHHHhc
Q psy9282 53 RTGMTLDEARDILDIKQLDPKEIKQRYEFLFNAN 86 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~~~~~Ik~~yr~L~~~n 86 (120)
..-+|.+||.+.|||..+ .-++|...+
T Consensus 14 K~~LTi~EaAeylgIg~~-------~l~~L~~~~ 40 (70)
T 1y6u_A 14 RYTLTIEEASKYFRIGEN-------KLRRLAEEN 40 (70)
T ss_dssp SSEEEHHHHHHHTCSCHH-------HHHHHHHHC
T ss_pred cceeCHHHHHHHHCcCHH-------HHHHHHHcC
Confidence 345899999999999954 344566554
No 85
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=21.06 E-value=1.4e+02 Score=19.34 Aligned_cols=15 Identities=40% Similarity=0.842 Sum_probs=12.7
Q ss_pred CHHHHHHHHHHHHHh
Q psy9282 71 DPKEIKQRYEFLFNA 85 (120)
Q Consensus 71 ~~~~Ik~~yr~L~~~ 85 (120)
|.++|+++|..|+..
T Consensus 45 T~~q~k~ry~~l~~d 59 (93)
T 2cjj_A 45 TPEEVKKHYEILVED 59 (93)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 779999999999744
No 86
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=20.76 E-value=55 Score=22.73 Aligned_cols=19 Identities=16% Similarity=0.167 Sum_probs=14.3
Q ss_pred cCCCCHHHHHHHcCCCCCC
Q psy9282 53 RTGMTLDEARDILDIKQLD 71 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~~ 71 (120)
..+||..|..++||++..+
T Consensus 201 ~~g~s~~EIA~~lgis~~~ 219 (239)
T 1rp3_A 201 YEELPAKEVAKILETSVSR 219 (239)
T ss_dssp TSCCCHHHHHHHTTSCHHH
T ss_pred hcCCCHHHHHHHhCCCHHH
Confidence 4578888888888887654
No 87
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=20.68 E-value=42 Score=24.42 Aligned_cols=30 Identities=30% Similarity=0.192 Sum_probs=21.4
Q ss_pred cCCCCHHHHHHHcCCCCCCH-HHHHHHHHHH
Q psy9282 53 RTGMTLDEARDILDIKQLDP-KEIKQRYEFL 82 (120)
Q Consensus 53 ~~~Ms~~EA~~ILgv~~~~~-~~Ik~~yr~L 82 (120)
..++|..|-..+||+++.|- .-+++.++||
T Consensus 188 ~~G~s~~eIa~~l~is~~tV~~~~~~~~~kl 218 (237)
T 3szt_A 188 AVGKTYGEIGLILSIDQRTVKFHIVNAMRKL 218 (237)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 45799999999999987653 4455555554
Done!