RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9282
(120 letters)
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16;
DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A
{Saccharomyces cerevisiae}
Length = 65
Score = 79.1 bits (195), Expect = 3e-21
Identities = 30/62 (48%), Positives = 41/62 (66%), Gaps = 4/62 (6%)
Query: 56 MTLDEARDILDIK----QLDPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEV 111
MTLDE+ IL+I+ L+ +I R+ +LF ND KGGSFY+QSKV RA ER+ E+
Sbjct: 1 MTLDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKWEL 60
Query: 112 KK 113
+
Sbjct: 61 AQ 62
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14;
DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A
{Saccharomyces cerevisiae}
Length = 71
Score = 54.3 bits (131), Expect = 2e-11
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 56 MTLDEARDILDIKQ--LDPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEVKK 113
M EA IL++ + L K++K+ + + AN KGGS ++ +K+ AK+ +++
Sbjct: 11 MNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLEKRGIS 70
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 2e-05
Identities = 18/110 (16%), Positives = 37/110 (33%), Gaps = 24/110 (21%)
Query: 20 FAKALRQEYAASQEAAKR---------AGGGRQGTAQASENLRTGMTLDEARDILD--IK 68
K L A R G A +N + + D+ I++ +
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT-WDNWKH-VNCDKLTTIIESSLN 364
Query: 69 QLDPKEIKQRYE--FLFNANDSSKGGSFYIQSKVVRA--KERIDQEVKKV 114
L+P E ++ ++ +F S+ I + ++ + I +V V
Sbjct: 365 VLEPAEYRKMFDRLSVF--PPSAH-----IPTILLSLIWFDVIKSDVMVV 407
Score = 31.4 bits (70), Expect = 0.069
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 40 GGRQGTAQASENLRTGMTLDEARDI----LDIKQLD-PKEIKQ 77
T + ++ +T DE + + LD + D P+E+
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 4e-05
Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 40/121 (33%)
Query: 12 GAQVVGRAFAKALRQEYAASQEAAKRAGGGRQGTAQASENLRTGMTLDEARDILDIKQLD 71
G+Q G L + A+Q+ RA + G + ILDI +
Sbjct: 1625 GSQEQGMG--MDLYKTSKAAQDVWNRAD------NHFKDTY--GFS------ILDIVINN 1668
Query: 72 PKE------------IKQRY-EFLFNANDSSKGGSFYIQSKVVRAKERIDQEVKKVSGDY 118
P I++ Y +F ++ G E+I +E+ + S Y
Sbjct: 1669 PVNLTIHFGGEKGKRIRENYSAMIF---ETIVDGKL--------KTEKIFKEINEHSTSY 1717
Query: 119 S 119
+
Sbjct: 1718 T 1718
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET:
NAG BMA MAN; 1.67A {Botrytis aclada}
Length = 580
Score = 28.9 bits (65), Expect = 0.32
Identities = 6/24 (25%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 77 QRYEFLFNANDSSKGGSFYIQSKV 100
QRY+ + AN ++ +++I+
Sbjct: 309 QRYDVIVEANAAA--DNYWIRGNW 330
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus
lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Length = 521
Score = 29.2 bits (66), Expect = 0.33
Identities = 7/24 (29%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 77 QRYEFLFNANDSSKGGSFYIQSKV 100
QRY + AN + G+++I++
Sbjct: 268 QRYSVVVEANQAV--GNYWIRANP 289
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein
4, UIP4, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: g.44.1.1
Length = 94
Score = 27.9 bits (62), Expect = 0.35
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 66 DIKQLDPKEIKQRYE-FLFNANDSSKG 91
+I+ + EI QRY+ F + S G
Sbjct: 68 EIECMVAAEIMQRYKKLQFERSGPSSG 94
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum
ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Length = 495
Score = 28.8 bits (65), Expect = 0.37
Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 77 QRYEFLFNANDSSKGGSFYIQSKV 100
QRY F+ NAN G+++I++
Sbjct: 245 QRYSFVLNANQPV--GNYWIRANP 266
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2
Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB:
3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A*
2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A*
4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Length = 499
Score = 28.8 bits (65), Expect = 0.42
Identities = 7/24 (29%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 77 QRYEFLFNANDSSKGGSFYIQSKV 100
QRY F+ +AN + +++I++
Sbjct: 242 QRYSFVLDANQAV--DNYWIRANP 263
>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural
genomics, PSI-2, protein structure initiative; HET:
NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10
c.2.1.6
Length = 276
Score = 28.6 bits (63), Expect = 0.46
Identities = 6/39 (15%), Positives = 15/39 (38%), Gaps = 6/39 (15%)
Query: 6 IQIAVLGAQVVGRAFAKALRQE------YAASQEAAKRA 38
+ + +G + R F + L+ + S + A+
Sbjct: 3 LVLNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNL 41
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper
depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A
{Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB:
1a65_A*
Length = 503
Score = 28.4 bits (64), Expect = 0.52
Identities = 7/20 (35%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
Query: 77 QRYEFLFNANDSSKGGSFYI 96
QRY F+ +AN +++I
Sbjct: 241 QRYSFVLDANQPV--DNYWI 258
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A
{Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB:
1aso_A* 1asp_A* 1asq_A*
Length = 552
Score = 28.4 bits (64), Expect = 0.59
Identities = 2/22 (9%), Positives = 9/22 (40%), Gaps = 1/22 (4%)
Query: 77 QRYEFLFNANDSSKGGSFYIQS 98
+ Y L + + ++++
Sbjct: 260 ESYSVLITTDQNP-SENYWVSV 280
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG
MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3
b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A*
2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Length = 559
Score = 28.1 bits (63), Expect = 0.67
Identities = 4/24 (16%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Query: 77 QRYEFLFNANDSSKGGSFYIQSKV 100
QRY+ + +A+ + +++
Sbjct: 271 QRYDVVIDASRAP--DNYWFNVTF 292
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, MCSG; 2.19A {Bacteroides fragilis}
Length = 266
Score = 27.8 bits (61), Expect = 0.76
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 9/47 (19%)
Query: 1 MAKYI--IQIAVLGAQVVGRAFAKALRQE-------YAASQEAAKRA 38
M + I I ++GA + AKAL ++ Y+ ++E+A+
Sbjct: 4 MKRSIEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESAREL 50
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 27.7 bits (61), Expect = 0.99
Identities = 12/72 (16%), Positives = 18/72 (25%), Gaps = 12/72 (16%)
Query: 8 IAVLGAQVVGRAFAKAL------------RQEYAASQEAAKRAGGGRQGTAQASENLRTG 55
IAVLG VGR A AL + ++ G
Sbjct: 22 IAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHL 81
Query: 56 MTLDEARDILDI 67
+ ++
Sbjct: 82 AAFADVAAGAEL 93
>2nqw_A CBS domain protein; PFAM03471, hemolysins, CBS domains,
transporter associated D CORC_HLYC, structural
genomics, PSI-2; 1.30A {Porphyromonas gingivalis} SCOP:
d.145.1.4
Length = 93
Score = 26.8 bits (60), Expect = 1.0
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 56 MTLDEARDILDIKQLDPKEIKQRYE 80
+L + R LD+ + E+ +
Sbjct: 23 TSLSDVRHYLDLPENAFGELGDEVD 47
>3fbg_A Putative arginate lyase; structural genomics, unknown function,
PSI-2, protein structure initiative; 1.60A
{Staphylococcus haemolyticus}
Length = 346
Score = 27.6 bits (62), Expect = 1.1
Identities = 14/105 (13%), Positives = 30/105 (28%), Gaps = 27/105 (25%)
Query: 6 IQIA-VLGAQVVG-------RAFAKAL--------RQEYAASQEAAKRAG--------GG 41
QIA G +V+ + K + ++ +
Sbjct: 168 TQIAKAYGLRVITTASRNETIEWTKKMGADIVLNHKESLLNQFKTQGIELVDYVFCTFNT 227
Query: 42 RQGTAQASENLRTG---MTLDEARDILDIKQLDPKEIKQRYEFLF 83
+ ++ T+ + D+ L PK + +EF+F
Sbjct: 228 DMYYDDMIQLVKPRGHIATIVAFENDQDLNALKPKSLSFSHEFMF 272
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate
isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Length = 365
Score = 27.5 bits (61), Expect = 1.3
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 15/73 (20%)
Query: 1 MAKYIIQIAVLGAQVVG--RAFAKALRQEYAASQEAAKRAGGGRQGTAQASENLRTGMTL 58
+ K + VLGA+ VG R + + Q S E+LR M
Sbjct: 293 IIKAL----VLGAKAVGLSRTMLELVEQH---SVHEVIAI------VNGWKEDLRLIMCA 339
Query: 59 DEARDILDIKQLD 71
+ I +++ +D
Sbjct: 340 LNCQTIAELRNVD 352
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta
strands, dimer, cavity, oxidoreductase; 2.30A
{Pseudomonas putida}
Length = 430
Score = 27.2 bits (59), Expect = 1.4
Identities = 10/57 (17%), Positives = 16/57 (28%)
Query: 7 QIAVLGAQVVGRAFAKALRQEYAASQEAAKRAGGGRQGTAQASENLRTGMTLDEARD 63
+I ++GA G LRQ R G + +T+
Sbjct: 24 RIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRLLNTVAHNAVTVQREVA 80
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 27.1 bits (61), Expect = 1.5
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 12/57 (21%)
Query: 40 GGRQGTAQASENLR--TGMTLDEARDILDIKQLDP----------KEIKQRYEFLFN 84
G ++++ +++ + D L+ L P KEI+ R FL +
Sbjct: 451 AGESKGEHGAKSIAEVCELSIADCADFLNALTLGPREQAIAGQVLKEIRSRLGFLLD 507
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc;
HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Length = 534
Score = 26.9 bits (60), Expect = 1.6
Identities = 6/20 (30%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 77 QRYEFLFNANDSSKGGSFYI 96
QRY L + + + +F I
Sbjct: 234 QRYTVLVHTKNDT-DKNFAI 252
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding
domain, monofunctional, oxidoreductase; 2.80A
{Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB:
1ee9_A*
Length = 320
Score = 26.9 bits (60), Expect = 1.8
Identities = 5/32 (15%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 13 AQVV-GRAFAKALRQEYAASQEAAKRAGGGRQ 43
+ + A+ E + E K+ G+
Sbjct: 5 GRTILASKVAETFNTEIINNVEEYKKTHNGQG 36
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase,
arginine degradation pathway, giardia lamblia, drug
target; 2.00A {Giardia intestinalis}
Length = 328
Score = 26.8 bits (60), Expect = 1.8
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 55 GMTLDEARDILDIKQLDPKEIKQ 77
GM + R +L I L PKE+
Sbjct: 1 GMPFKQTRHLLTISALCPKELAY 23
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural
genomics, riken structural genomics/P initiative, RSGI;
HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1
PDB: 1vcg_A* 3dh7_A*
Length = 332
Score = 26.5 bits (58), Expect = 2.3
Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 16/71 (22%)
Query: 1 MAKYIIQIAVLGAQVVG--RAFAKALRQEYAASQEAAKRAGGGRQGTAQASENLRTGMTL 58
AK + LGA ++ R + + E E LRT +
Sbjct: 271 GAKAL----ALGADLLAVARPLLRPALE----GAERVAAW------IGDYLEELRTALFA 316
Query: 59 DEARDILDIKQ 69
AR+ + +
Sbjct: 317 IGARNPKEARG 327
>3py9_A Protein kinase; pasta, muropeptide binding, phosphorylation,
membran transferase; 2.20A {Staphylococcus aureus
subsp} PDB: 3m9g_A
Length = 294
Score = 26.4 bits (58), Expect = 2.3
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 54 TGMTLDEARDILDIKQLDPKEIKQRY 79
G ++ EA I + L +I + Y
Sbjct: 13 IGKSVKEAEQIFNKNNLKLGKISRSY 38
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 26.3 bits (59), Expect = 2.5
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 10/41 (24%)
Query: 54 TGMTLDEARDILDIKQLDP----------KEIKQRYEFLFN 84
T M++ EA D +L +EI+ R FL N
Sbjct: 148 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQN 188
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm;
oxidoreductase, hydrolase, leishmaniasis; 2.70A
{Leishmania major}
Length = 300
Score = 26.3 bits (59), Expect = 2.7
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 13 AQVV-GRAFAKALRQEYAASQEAAKRAGGGRQ 43
AQ++ G+A A A+R E A + GGR
Sbjct: 6 AQIIDGKAIAAAIRSELKDKVAALRELYGGRV 37
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl
diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus
shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A*
3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Length = 368
Score = 26.4 bits (58), Expect = 2.9
Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 16/73 (21%)
Query: 1 MAKYIIQIAVLGAQVVG--RAFAKALRQEYAASQEAAKRAGGGRQGTAQASENLRTGMTL 58
AK I LGA + G K+ + +E+ ++ + L+ M L
Sbjct: 282 AAKAI----ALGADIAGMALPVLKSAIE----GKESLEQF------FRKIIFELKAAMML 327
Query: 59 DEARDILDIKQLD 71
++D+ +K+
Sbjct: 328 TGSKDVDALKKTS 340
>3gpv_A Transcriptional regulator, MERR family; protein structure
initiative II(PSI II), NYSGXRC, structural genomics;
1.90A {Bacillus thuringiensis serovarkonkukian}
Length = 148
Score = 25.8 bits (57), Expect = 3.1
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 53 RTGMTLDEARDILDIKQLDPKEIKQRYEFL 82
TGM + + + +D I R + +
Sbjct: 71 NTGMPIQKIKQFIDWSMEGDSTILHRLKLM 100
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 25.5 bits (56), Expect = 3.4
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 72 PKEIKQRYEFLFNANDSSKGGSFYIQSKVVRA 103
P+ + +Y LFN++D + G ++ R
Sbjct: 9 PQSSRLKYRQLFNSHDKTMSG--HLTGPQART 38
>2kue_A PKNB, serine/threonine-protein kinase PKNB; external domain,
signaling, STPK, resuscitation, transferase; NMR
{Mycobacterium tuberculosis}
Length = 138
Score = 25.7 bits (57), Expect = 3.4
Identities = 4/26 (15%), Positives = 7/26 (26%)
Query: 54 TGMTLDEARDILDIKQLDPKEIKQRY 79
+ +T EA L +
Sbjct: 14 STLTYAEAVKKLTAAGFGRFKQANSP 39
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 26.3 bits (59), Expect = 3.4
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 10/41 (24%)
Query: 54 TGMTLDEARDILDIKQLDP----------KEIKQRYEFLFN 84
T +++ E + L L KEI++R EFL +
Sbjct: 410 TELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFLVD 450
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 25.9 bits (58), Expect = 3.5
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 10/41 (24%)
Query: 54 TGMTLDEARDILDIKQLDP----------KEIKQRYEFLFN 84
T M++ EA D +L +EI+ R FL N
Sbjct: 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQN 490
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 26.0 bits (57), Expect = 3.6
Identities = 19/105 (18%), Positives = 33/105 (31%), Gaps = 23/105 (21%)
Query: 12 GAQVVG---RAFAKAL----RQEYAASQEAAKRAGGGRQGTAQASENLRTGMTLDEARDI 64
G Q + A+ EY A A R+ A + GM +
Sbjct: 1451 GGQAIVVHPDYLYGAITEDRYNEYVAKVSA-------RE--KSAYKFFHNGMI---YNKL 1498
Query: 65 LDIKQLDPKEIKQRYEFLFN----ANDSSKGGSFYIQSKVVRAKE 105
K+ P + + + + K GS SK +++K+
Sbjct: 1499 FVSKEHAPYTDELEEDVYLDPLARVSKDKKSGSLTFNSKNIQSKD 1543
>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS
protein structure initiative, midwest center for
structural genomics; HET: MSE; 1.90A {Thermoplasma
volcanium GSS1} PDB: 3jsa_A*
Length = 331
Score = 26.0 bits (58), Expect = 3.7
Identities = 13/82 (15%), Positives = 22/82 (26%), Gaps = 8/82 (9%)
Query: 6 IQIAVLGAQVVGRAFAKALRQEYAASQEAAKRAGGGRQGTAQASENLRTGMTLDEARDIL 65
I +++ G VG + +R R G A +E DI
Sbjct: 7 INLSIFGLGNVGLNLLRIIRS-----FNEENRLGLKFNVVFVAD---SLHSYYNERIDIG 58
Query: 66 DIKQLDPKEIKQRYEFLFNAND 87
+ K E+ +
Sbjct: 59 KVISYKEKGSLDSLEYESISAS 80
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 26.2 bits (56), Expect = 3.8
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 8 IAVLGAQVVGRAFAKALRQEYAASQ--EAAKRAGG 40
IA++G + G + A+AL + ++ +GG
Sbjct: 5 IAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGG 39
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin
contain oxidoreductase, monoamine oxidase, NAD,
extracellular, oxidoreductase; HET: FAD; 2.50A {Homo
sapiens}
Length = 342
Score = 25.9 bits (55), Expect = 3.9
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 5 IIQIAVLGAQVVGRAFAKALRQEYAASQEAA----KRAGGGRQGT 45
+ Q+ ++GA + G A LR++ + A GGR T
Sbjct: 1 MAQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTT 45
>3ef8_A Putative scyalone dehydratase; YP_496742.1, structural genomics,
joint center for structural genomics, JCSG; HET: MSE
PGE PG4; 1.50A {Novosphingobium aromaticivorans
DSM12444} SCOP: d.17.4.28
Length = 150
Score = 25.5 bits (56), Expect = 4.3
Identities = 4/16 (25%), Positives = 9/16 (56%)
Query: 55 GMTLDEARDILDIKQL 70
GMT ++ I+++
Sbjct: 1 GMTDTNLVEMRAIERM 16
>3e02_A Uncharacterized protein DUF849; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE; 1.90A {Burkholderia xenovorans LB400}
Length = 311
Score = 25.9 bits (56), Expect = 4.5
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 56 MTLDEARDILDIKQLDP 72
T DEAR +L K +
Sbjct: 292 ATPDEARAMLKTKGANE 308
>3lot_A Uncharacterized protein; protein of unknown function, structural
genomics, joint CENT structural genomics, JCSG; HET:
MSE; 1.89A {Archaeoglobus fulgidus}
Length = 314
Score = 25.9 bits (56), Expect = 4.6
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 53 RTGMTLDEARDILDIKQLDP 72
+ T DE R+IL +K +
Sbjct: 292 KRPATPDEVREILGLKGKER 311
>3ded_A Probable hemolysin; structural genomics, P protein structure
initiative, midwest center for structural genomics,
MCSG, membrane; HET: MSE; 2.14A {Chromobacterium
violaceum} SCOP: d.145.1.4
Length = 113
Score = 24.9 bits (55), Expect = 4.9
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 56 MTLDEARDILDIKQLDPKEIKQRYE 80
++LD R+ +++ P E
Sbjct: 43 VSLDRFREFFELEAPLPGEAGGNIH 67
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 24.7 bits (54), Expect = 5.4
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 5/43 (11%)
Query: 72 PKEIKQRYEFLFNANDSSKGGSFYIQSKVVRA---KERIDQEV 111
K +Y+ +F D G ++ VR K + +
Sbjct: 5 SPAEKAKYDEIFLKTDKDMDG--FVSGLEVREIFLKTGLPSTL 45
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura
genomics, protein structure initiative; HET: FAD NDP;
2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5
PDB: 2gvc_A* 1vqw_A*
Length = 447
Score = 25.3 bits (55), Expect = 6.4
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 8 IAVLGAQVVGRAFAKALRQEYAASQ----EAAKRAGG 40
IA++GA G AKAL E A Q E GG
Sbjct: 9 IAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGG 45
>3rz2_A Protein tyrosine phosphatase type IVA 1; tyrosine phosphatase, dual
specific phosphatase, COMP with peptide, hydrolase;
2.80A {Rattus norvegicus} PDB: 1x24_A 1zcl_A
Length = 189
Score = 25.0 bits (54), Expect = 6.5
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Query: 37 RAGGGRQGTAQASENLRTGMTLDEARDILDIKQLDPKEI--KQRYEFL 82
AG GR A + GM ++A + I+Q KQ +L
Sbjct: 125 VAGLGRAPVLVALALIEGGMKYEDA--VQFIRQKRRGAFNSKQL-LYL 169
>1a4i_A Methylenetetrahydrofolate dehydrogenase /
methenyltetrahydrofolate cyclohydrolase...; THF,
bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo
sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A*
1dig_A*
Length = 301
Score = 25.2 bits (56), Expect = 6.5
Identities = 5/32 (15%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 13 AQVV-GRAFAKALRQEYAASQEAAKRAGGGRQ 43
A+++ G+ + +R K G
Sbjct: 4 AEILNGKEISAQIRARLKNQVTQLKEQVPGFT 35
>2kuf_A PKNB, serine/threonine-protein kinase PKNB; external domain,
signaling, STPK, resuscitation, transferase; NMR
{Mycobacterium tuberculosis}
Length = 139
Score = 25.0 bits (55), Expect = 6.6
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 54 TGMTLDEARDILDIKQLDPKEIKQRYE 80
G T+D A+ L++
Sbjct: 14 AGQTVDVAQKNLNVYGFTKFSQASVDS 40
>3e49_A Uncharacterized protein DUF849 with A TIM barrel; structural
genomics, joint center for structural genomics; HET:
MSE; 1.75A {Burkholderia xenovorans LB400}
Length = 311
Score = 25.1 bits (54), Expect = 6.7
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 53 RTGMTLDEARDILDIKQLDP 72
+ EAR +L +K
Sbjct: 289 LEVASPAEARTMLGLKGPQN 308
>3c6c_A 3-keto-5-aminohexanoate cleavage enzyme; DUF849 family protein, TIM
beta/alpha-barrel fold, structura genomics; HET: MSE;
1.72A {Ralstonia eutropha}
Length = 316
Score = 25.1 bits (54), Expect = 6.7
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 53 RTGMTLDEARDILDIKQ 69
+ T DEARDI+ + +
Sbjct: 298 MSVATPDEARDIMGLSR 314
>3fhd_A ORF 37; enase like PD-(D/E)XK superfamily, hydrolase; 1.85A {Human
herpesvirus 8 type M} PDB: 3pov_A*
Length = 508
Score = 25.1 bits (54), Expect = 6.9
Identities = 8/48 (16%), Positives = 16/48 (33%)
Query: 48 ASENLRTGMTLDEARDILDIKQLDPKEIKQRYEFLFNANDSSKGGSFY 95
S + + D + EIK R+++ F + + Y
Sbjct: 240 VSLDFAANVKTDTEGRLQFDPNCKVYEIKCRFKYTFAKMECDPIYAAY 287
>3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A
{Vibrio vulnificus}
Length = 648
Score = 25.2 bits (55), Expect = 7.0
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 59 DEARDILDIKQLDPKEIKQRYE 80
D D++ +D +I++ Y
Sbjct: 587 DTVEDMMRYVHIDVDQIRKNYH 608
>2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A
{Candidatus cloacamonas acidaminovoransorganism_taxid}
PDB: 2y7d_A 2y7f_A* 2y7g_A
Length = 282
Score = 25.0 bits (54), Expect = 7.3
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 53 RTGMTLDEARDILDIKQ 69
R T ++AR+IL + +
Sbjct: 266 RPLATPEQAREILALNK 282
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 24.9 bits (53), Expect = 7.6
Identities = 5/18 (27%), Positives = 9/18 (50%), Gaps = 5/18 (27%)
Query: 105 ERIDQEVKKVSGD---YS 119
E+ Q +KK+ Y+
Sbjct: 18 EK--QALKKLQASLKLYA 33
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding,
nucleotide-binding, DN protein; 1.70A {Thermus
thermophilus}
Length = 83
Score = 24.0 bits (53), Expect = 7.7
Identities = 8/21 (38%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Query: 51 NLRTGMTLDEARDILDIKQLD 71
+LR G+T+ EA +D + L+
Sbjct: 8 DLR-GLTVAEALLEVD-QALE 26
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes}
SCOP: c.66.1.45
Length = 344
Score = 25.1 bits (55), Expect = 7.7
Identities = 4/40 (10%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 58 LDEARDILDIKQLDPKEIKQ--RYEFLFNANDSSKGGSFY 95
L + + ++++ +EI++ + L +
Sbjct: 70 LQASYESIELENFSNEEIRKGLQLALLKGMKHGIQVNHQM 109
>1k7c_A Rhamnogalacturonan acetylesterase; N-linked glycosylation,
SGNH-hydrolase, hydrolase; HET: NAG MAN; 1.12A
{Aspergillus aculeatus} SCOP: c.23.10.4 PDB: 1dex_A*
1deo_A* 1pp4_A* 3c1u_A*
Length = 233
Score = 25.0 bits (54), Expect = 7.8
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 12 GAQVVGRAFAKALRQEYAA 30
GA+VV AF KA+ +
Sbjct: 200 GAEVVAEAFLKAVVCTGTS 218
>3gp4_A Transcriptional regulator, MERR family; structural genomics,
DNA-BI transcription regulator, PSI-2; 1.85A {Listeria
monocytogenes str}
Length = 142
Score = 24.6 bits (54), Expect = 8.1
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 53 RTGMTLDEARDILDIKQLDPKEIKQRYEFL 82
R G++++ D L + + ++ R E L
Sbjct: 57 RAGLSIEALIDYLALFREGEHTLEARAELL 86
>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine
dehydrogenase, structural G joint center for structural
genomics, JCSG; 2.20A {Archaeoglobus fulgidus}
Length = 327
Score = 24.8 bits (55), Expect = 8.4
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 5 IIQIAVLGAQVVGRAFAKALRQEYAASQEAAKRAG 39
+I+IA++G VG+ A+ L ++ +E K G
Sbjct: 2 MIKIAIVGFGTVGQGVAELLIRK---REEIEKAIG 33
>1rxd_A Protein tyrosine phosphatase type IVA, member 1; protein tyrosine
phosphatase IVA1...; structural genomics, NYSGXRC,
unknown function, PSI; 1.90A {Homo sapiens} SCOP:
c.45.1.1 PDB: 1xm2_A 1zck_A 1r6h_A 1v3a_A
Length = 159
Score = 24.6 bits (53), Expect = 8.9
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 37 RAGGGRQGTAQASENLRTGMTLDEA 61
AG GR A + GM ++A
Sbjct: 104 VAGLGRAPVLVALALIEGGMKYEDA 128
>3fvy_A Dipeptidyl-peptidase 3; SGC, DPP3, alternative splicing,
aminopeptidase, cytoplasm, hydrolase, metal-binding,
metalloprotease, phosphoprotein; 1.90A {Homo sapiens}
PDB: 3t6b_A 3t6j_A
Length = 728
Score = 24.8 bits (53), Expect = 9.2
Identities = 9/54 (16%), Positives = 19/54 (35%)
Query: 67 IKQLDPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEVKKVSGDYSS 120
+ + E K YE + S+ + +++ E + GDY+
Sbjct: 202 LFKEVDGEGKPYYEVRLASVLGSEPSLDSEVTSKLKSYEFRGSPFQVTRGDYAP 255
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.129 0.340
Gapped
Lambda K H
0.267 0.0821 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,796,513
Number of extensions: 102757
Number of successful extensions: 442
Number of sequences better than 10.0: 1
Number of HSP's gapped: 438
Number of HSP's successfully gapped: 106
Length of query: 120
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 38
Effective length of database: 4,412,271
Effective search space: 167666298
Effective search space used: 167666298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.3 bits)