RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9282
(120 letters)
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Murine polyomavirus [TaxId: 10634]}
Length = 79
Score = 26.9 bits (59), Expect = 0.27
Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 6/64 (9%)
Query: 56 MTLDEARDILDIKQLDP------KEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQ 109
++ + +L++ +L ++Q Y+ KGGS + ++
Sbjct: 5 LSRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKT 64
Query: 110 EVKK 113
EV
Sbjct: 65 EVYN 68
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 26.6 bits (58), Expect = 0.37
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 53 RTGMTLDEARDILDIKQLDPKEIKQRYE-FLFNANDSSKG 91
L E +I+ + EI QRY+ F + S G
Sbjct: 59 PKQGHLQEN----EIECMVAAEIMQRYKKLQFERSGPSSG 94
>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase
SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}
Length = 335
Score = 27.3 bits (59), Expect = 0.53
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 8 IAVLGAQVVGRAFAKALRQEYAASQ----EAAKRAGG 40
IA++GA G AKAL E A Q E GG
Sbjct: 7 IAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGG 43
>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid
dehydrogenase (DAPDH) {Corynebacterium glutamicum
[TaxId: 1718]}
Length = 170
Score = 26.8 bits (58), Expect = 0.57
Identities = 7/26 (26%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 1 MAKYIIQIAVLGAQVVGRAFAKALRQ 26
M I++A++G +GR+ K + +
Sbjct: 1 MTN--IRVAIVGYGNLGRSVEKLIAK 24
>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 180
Score = 26.6 bits (57), Expect = 0.70
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 8 IAVLGAQVVGRAFAKAL 24
+++LGA +G A + L
Sbjct: 3 VSILGAGAMGSALSVPL 19
>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE
{Escherichia coli [TaxId: 562]}
Length = 167
Score = 26.4 bits (57), Expect = 0.74
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 8 IAVLGAQVVGRAFAKALRQ 26
I VLG +G+ + AL +
Sbjct: 3 ITVLGCGALGQLWLTALCK 21
>d1lmb3_ a.35.1.2 (3:) lambda C1 repressor, DNA-binding domain
{Bacteriophage lambda [TaxId: 10710]}
Length = 87
Score = 25.8 bits (56), Expect = 0.80
Identities = 12/58 (20%), Positives = 21/58 (36%)
Query: 18 RAFAKALRQEYAASQEAAKRAGGGRQGTAQASENLRTGMTLDEARDILDIKQLDPKEI 75
+A + + E SQE+ G Q A N + A + I ++ +E
Sbjct: 14 KAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEF 71
>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga
maritima [TaxId: 2336]}
Length = 153
Score = 26.1 bits (56), Expect = 1.0
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 8 IAVLGAQVVGRAFAKALRQEYAASQ 32
+ +G + R F + L+ Y
Sbjct: 2 LNFVGTGTLTRFFLECLKDRYEIGY 26
>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal
domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 246
Score = 26.0 bits (56), Expect = 1.1
Identities = 13/108 (12%), Positives = 39/108 (36%)
Query: 6 IQIAVLGAQVVGRAFAKALRQEYAASQEAAKRAGGGRQGTAQASENLRTGMTLDEARDIL 65
+++ V+GA V+G + A + + Y + + + T + ++ G+ +
Sbjct: 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVAAGLWQPYTSEPS 60
Query: 66 DIKQLDPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEVKK 113
+ ++ + + Y + ++ S +E + K
Sbjct: 61 NPQEANWNQQTFNYLLSHIGSPNAANMGLTPVSGYNLFREAVPDPYWK 108
>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase
{Trypanosome (Leishmania mexicana) [TaxId: 5665]}
Length = 189
Score = 25.9 bits (56), Expect = 1.2
Identities = 7/24 (29%), Positives = 9/24 (37%), Gaps = 4/24 (16%)
Query: 1 MAKYIIQIAVLGAQVVGRAFAKAL 24
+ K V G+ G A A L
Sbjct: 7 LNK----AVVFGSGAFGTALAMVL 26
>d1ml4a1 c.78.1.1 (A:2-151) Aspartate carbamoyltransferase
catalytic subunit {Archaeon Pyrococcus abyssi [TaxId:
29292]}
Length = 150
Score = 25.6 bits (55), Expect = 1.4
Identities = 4/16 (25%), Positives = 10/16 (62%)
Query: 62 RDILDIKQLDPKEIKQ 77
RD++ I+ ++I+
Sbjct: 5 RDVISIRDFSKEDIET 20
>d1otha1 c.78.1.1 (A:34-184) Ornithine transcarbamoylase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 151
Score = 25.5 bits (55), Expect = 1.4
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 62 RDILDIKQLDPKEIKQ 77
RD+L +K +EIK
Sbjct: 7 RDLLTLKNFTGEEIKY 22
>d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller
protein C.AhdI {Aeromonas hydrophila [TaxId: 644]}
Length = 69
Score = 24.7 bits (54), Expect = 1.4
Identities = 10/54 (18%), Positives = 20/54 (37%)
Query: 22 KALRQEYAASQEAAKRAGGGRQGTAQASENLRTGMTLDEARDILDIKQLDPKEI 75
+ LR SQE G + E + ++L + ++P+E+
Sbjct: 15 RELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALDIEPREL 68
>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase
At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 184
Score = 25.7 bits (55), Expect = 1.5
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 6 IQIAVLGAQVVGRAFAKALRQ 26
I+I V+G + R ++A+
Sbjct: 2 IRIGVMGCADIARKVSRAIHL 22
>d1duvg1 c.78.1.1 (G:1-150) Ornithine transcarbamoylase
{Escherichia coli [TaxId: 562]}
Length = 150
Score = 25.6 bits (55), Expect = 1.6
Identities = 3/16 (18%), Positives = 6/16 (37%)
Query: 62 RDILDIKQLDPKEIKQ 77
+ L + P E+
Sbjct: 6 KHFLKLLDFTPAELNS 21
>gi|154685965|ref|YP_001421126.1|(1-144:304) aspartate
carbamoyltransferase catalytic subunit [Bacillus
amyloliquefaciens FZB42]
gi|166234047|sp|A7Z4G9.1|PYRB_BACA2 RecName:
Full=Aspartate carbamoyltransferase; AltName:
Full=Aspartate transcarbamylase; Short=ATCase
gi|154351816|gb|ABS73895.1| PyrB [Bacillus
amyloliquefaciens FZB42] E=3e-60 s/c=1.62 id=76%
cov=101%
Length = 144
Score = 25.2 bits (54), Expect = 1.7
Identities = 3/16 (18%), Positives = 7/16 (43%)
Query: 62 RDILDIKQLDPKEIKQ 77
+ + +L EI +
Sbjct: 2 NHLTAMSELSAAEITE 17
>d1c07a_ a.39.1.6 (A:) Eps15 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 25.0 bits (54), Expect = 1.9
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 72 PKEIKQRYEFLFNANDSSKGGSFY 95
K +Y+ +F D G
Sbjct: 5 SPAEKAKYDEIFLKTDKDMDGFVS 28
>d1utxa_ a.35.1.3 (A:) Putative transcription regulator CylR2
{Enterococcus faecalis [TaxId: 1351]}
Length = 66
Score = 24.0 bits (52), Expect = 2.0
Identities = 10/54 (18%), Positives = 18/54 (33%)
Query: 22 KALRQEYAASQEAAKRAGGGRQGTAQASENLRTGMTLDEARDILDIKQLDPKEI 75
K +R++ SQ + T E + +L A I ++I
Sbjct: 7 KLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDI 60
>d1vlva1 c.78.1.1 (A:1-152) Ornithine transcarbamoylase
{Thermotoga maritima [TaxId: 2336]}
Length = 152
Score = 25.2 bits (54), Expect = 2.1
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 62 RDILDIKQLDPKEIKQ 77
R +L + P+EI+
Sbjct: 8 RSLLTLLDFSPEEIRY 23
>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate
carbamoyltransferase catalytic subunit {Escherichia
coli [TaxId: 562]}
Length = 310
Score = 25.3 bits (54), Expect = 2.3
Identities = 3/16 (18%), Positives = 7/16 (43%)
Query: 62 RDILDIKQLDPKEIKQ 77
+ I+ I L ++
Sbjct: 7 KHIISINDLSRDDLNL 22
>d1dxha1 c.78.1.1 (A:1-150) Ornithine transcarbamoylase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 150
Score = 24.8 bits (53), Expect = 2.5
Identities = 3/16 (18%), Positives = 9/16 (56%)
Query: 62 RDILDIKQLDPKEIKQ 77
R++L + +E++
Sbjct: 7 RNLLSLMHHSTRELRY 22
>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 165
Score = 25.1 bits (53), Expect = 2.5
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 6 IQIAVLGAQVVGRAFAKALRQ 26
++I V+G ++G + A LR+
Sbjct: 1 MKIGVVGLGLIGASLAGDLRR 21
>d3b8pa1 d.58.60.1 (A:54-292) Chain length determinant protein WzzB
{Salmonella typhimurium [TaxId: 90371]}
Length = 239
Score = 24.9 bits (54), Expect = 3.1
Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 57 TLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEVKKVS 115
T A ++L E++ + F++ S+ S + ++ R K I+Q VK +
Sbjct: 19 TYTNALNVLYGGNAPKISEVQANFISRFSSAFSAL--SEVLDNQKEREKLTIEQSVKGQA 76
Query: 116 GDYS 119
S
Sbjct: 77 LPLS 80
>d1pg5a1 c.78.1.1 (A:1-146) Aspartate carbamoyltransferase
catalytic subunit {Archaeon Sulfolobus acidocaldarius
[TaxId: 2285]}
Length = 146
Score = 24.7 bits (53), Expect = 3.2
Identities = 2/16 (12%), Positives = 6/16 (37%)
Query: 62 RDILDIKQLDPKEIKQ 77
+ I+ E++
Sbjct: 2 KHIISAYNFSRDELED 17
>d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus
caldolyticus [TaxId: 1394]}
Length = 77
Score = 23.6 bits (51), Expect = 3.6
Identities = 10/59 (16%), Positives = 18/59 (30%)
Query: 22 KALRQEYAASQEAAKRAGGGRQGTAQASENLRTGMTLDEARDILDIKQLDPKEIKQRYE 80
K +R + SQE G + E ++L I + ++ E
Sbjct: 16 KKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDIPASTFFRKME 74
>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline
dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}
Length = 184
Score = 24.5 bits (52), Expect = 3.7
Identities = 9/19 (47%), Positives = 9/19 (47%)
Query: 8 IAVLGAQVVGRAFAKALRQ 26
AVLG G AFA L
Sbjct: 4 YAVLGLGNGGHAFAAYLAL 22
>d1ekxa1 c.78.1.1 (A:1-150) Aspartate carbamoyltransferase
catalytic subunit {Escherichia coli [TaxId: 562]}
Length = 150
Score = 24.3 bits (52), Expect = 3.8
Identities = 3/16 (18%), Positives = 7/16 (43%)
Query: 62 RDILDIKQLDPKEIKQ 77
+ I+ I L ++
Sbjct: 7 KHIISINDLSRDDLNL 22
>d1pvva1 c.78.1.1 (A:1-150) Ornithine transcarbamoylase {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 150
Score = 24.2 bits (52), Expect = 4.0
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 62 RDILDIKQLDPKEIKQ 77
RD+L ++ +EI
Sbjct: 7 RDLLCLQDYTAEEIWT 22
>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice
blast fungus (Magnaporthe grisea) [TaxId: 148305]}
Length = 182
Score = 23.8 bits (50), Expect = 5.6
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 8 IAVLGAQVVGRAFAKALRQE 27
+ +LG+ V R L
Sbjct: 5 VLMLGSGFVTRPTLDVLTDS 24
>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha
subunit, middle domain {Pseudomonas fragi [TaxId: 296]}
Length = 186
Score = 23.7 bits (50), Expect = 6.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 2 AKYIIQIAVLGAQVVGRAFA 21
AK + Q AVLGA ++G A
Sbjct: 1 AKDVKQAAVLGAGIMGGGIA 20
>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId:
1423]}
Length = 134
Score = 23.7 bits (50), Expect = 6.4
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 7 QIAVLGAQVVGRAFAKALRQE 27
Q AV+G G + K L +
Sbjct: 2 QFAVIGLGRFGGSIVKELHRM 22
>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain
{Salmonella bacteriophage P22 [TaxId: 10754]}
Length = 66
Score = 22.9 bits (49), Expect = 6.7
Identities = 9/54 (16%), Positives = 16/54 (29%)
Query: 22 KALRQEYAASQEAAKRAGGGRQGTAQASENLRTGMTLDEARDILDIKQLDPKEI 75
+A R++ Q A + G E T + + Q P +
Sbjct: 9 RARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYL 62
>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 152
Score = 23.3 bits (49), Expect = 8.9
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 7 QIAVLGAQVVGRAFAKALRQ 26
++ +G V + A LR
Sbjct: 2 RVGFIGFGEVAQTLASRLRS 21
>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 168
Score = 23.1 bits (49), Expect = 9.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 6 IQIAVLGAQVVGRAFAKALRQE 27
+ +AV+GA VVG AF L
Sbjct: 5 VNVAVIGAGVVGSAFLDQLLAM 26
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.129 0.340
Gapped
Lambda K H
0.267 0.0590 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 409,947
Number of extensions: 17363
Number of successful extensions: 120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 45
Length of query: 120
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 46
Effective length of database: 1,391,576
Effective search space: 64012496
Effective search space used: 64012496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.2 bits)