BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9283
(242 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FQG|A Chain A, Crystal Structure Of The Tcerg1 Ff4-6 Tandem Repeat Domain
pdb|4FQG|B Chain B, Crystal Structure Of The Tcerg1 Ff4-6 Tandem Repeat Domain
Length = 190
Score = 215 bits (547), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 100/171 (58%), Positives = 147/171 (85%)
Query: 31 VRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTKKKREKFRELLNETSE 90
VR+S+++W + +R LRKDHRW+S LL+R+EKEKLFNEHIE LTKKKRE FR+LL+ETS
Sbjct: 20 VRSSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLFNEHIEALTKKKREHFRQLLDETSA 79
Query: 91 VTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTSTAKAEFRELLQETKLIS 150
+TL+S+WK+++K+IKEDPR KFSSSDR+ +REF++Y++DK TAKA+FR LL+ETK I+
Sbjct: 80 ITLTSTWKEVKKIIKEDPRCIKFSSSDRKKQREFEEYIRDKYITAKADFRTLLKETKFIT 139
Query: 151 HKSLGLLHENENYLSEIEEILRNDKRFLSLEHIPEERTQIILTYLDELEKR 201
++S L+ E++ +L ++E+IL+NDKR+L L+ +PEER ++I+ Y+D+L++R
Sbjct: 140 YRSKKLIQESDQHLKDVEKILQNDKRYLVLDCVPEERRKLIVAYVDDLDRR 190
>pdb|2DOF|A Chain A, Solution Structure Of The Fourth Ff Domain Of Human
Transcription Factor Ca150
Length = 85
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 43/49 (87%)
Query: 31 VRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTKKKRE 79
VR+S+++W + +R LRKDHRW+S LL+R+EKEKLFNEHIE LTKKKRE
Sbjct: 31 VRSSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLFNEHIEALTKKKRE 79
>pdb|2LKS|A Chain A, Ff11-60
Length = 50
Score = 30.4 bits (67), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 78 REKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFS 114
++ F+ELL E V ++SW+ K+I DPRY+ +
Sbjct: 8 KQAFKELLKE-KRVPSNASWEQAMKMIINDPRYSALA 43
>pdb|1UZC|A Chain A, The Structure Of An Ff Domain From Human HypaFBP11
pdb|2KZG|A Chain A, A Transient And Low Populated Protein Folding Intermediate
At Atomic Resolution
Length = 71
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 78 REKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFS 114
++ F+ELL E V ++SW+ K+I DPRY+ +
Sbjct: 18 KQAFKELLKE-KRVPSNASWEQAMKMIINDPRYSALA 53
>pdb|3EUC|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase
(Yp_297314.1) From Ralstonia Eutropha Jmp134 At 2.05 A
Resolution
pdb|3EUC|B Chain B, Crystal Structure Of Histidinol-Phosphate Aminotransferase
(Yp_297314.1) From Ralstonia Eutropha Jmp134 At 2.05 A
Resolution
Length = 367
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 165 SEIEEILRNDKRFLSLEHIPEERTQIILTYLDELEKRGPPPPPTASEPNRRLGNNYVNTF 224
S IE I+R+D R H+P+ L LD E PP SE RLG +N
Sbjct: 8 SLIERIIRDDVRAXGAYHVPDSHG---LVKLDAXENPYRLPPALRSELAARLGEVALNR- 63
Query: 225 GAYPKP 230
YP P
Sbjct: 64 --YPVP 67
>pdb|1OXJ|A Chain A, Crystal Structure Of The Smaug Rna Binding Domain
Length = 173
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 124 FKDYLKDKTSTAKAEFRELLQETKLISHKSLGL----LHENENYLSEIEEILRNDKRFLS 179
FK+ ++ +F + + TK SHK L L L E N L+ +E+ L + + +
Sbjct: 26 FKNMTYEEMLLITEDFLQSVGVTKGASHK-LALCIDKLKERANILNRVEQELLSGQ--ME 82
Query: 180 LEHIPEERTQIILTYLDELEKRGPP 204
L EE T I+LT + LE GPP
Sbjct: 83 LSTAVEELTNIVLTPMKPLESPGPP 107
>pdb|2L9V|A Chain A, Nmr Structure Of The Ff Domain L24a Mutant's Folding
Transition State
Length = 49
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 78 REKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFS 114
++ F+E L E V ++SW+ K+I DPRY+ +
Sbjct: 8 KQAFKEALKE-KRVPSNASWEQAMKMIINDPRYSALA 43
>pdb|2B5O|A Chain A, Ferredoxin-nadp Reductase
pdb|2B5O|B Chain B, Ferredoxin-nadp Reductase
Length = 402
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 36 LTWREAKRQLRKDHRW 51
L W E +R ++K+HRW
Sbjct: 382 LNWEEMRRSMKKEHRW 397
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.130 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,469,239
Number of Sequences: 62578
Number of extensions: 310605
Number of successful extensions: 1343
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 1319
Number of HSP's gapped (non-prelim): 59
length of query: 242
length of database: 14,973,337
effective HSP length: 96
effective length of query: 146
effective length of database: 8,965,849
effective search space: 1309013954
effective search space used: 1309013954
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.9 bits)