BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9283
(242 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O14776|TCRG1_HUMAN Transcription elongation regulator 1 OS=Homo sapiens GN=TCERG1 PE=1
SV=2
Length = 1098
Score = 242 bits (617), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 128/243 (52%), Positives = 184/243 (75%), Gaps = 29/243 (11%)
Query: 2 NETDKDADKKARQEASLREREKEVQRTLA-----------------------------VR 32
+E +K+ +++AR EASLRERE+EVQ+ + VR
Sbjct: 853 SEKEKELERQARIEASLREREREVQKARSEQTKEIDREREQHKREEAIQNFKALLSDMVR 912
Query: 33 NSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTKKKREKFRELLNETSEVT 92
+S+++W + +R LRKDHRW+S LL+R+EKEKLFNEHIE LTKKKRE FR+LL+ETS +T
Sbjct: 913 SSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLFNEHIEALTKKKREHFRQLLDETSAIT 972
Query: 93 LSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTSTAKAEFRELLQETKLISHK 152
L+S+WK+++K+IKEDPR KFSSSDR+ +REF++Y++DK TAKA+FR LL+ETK I+++
Sbjct: 973 LTSTWKEVKKIIKEDPRCIKFSSSDRKKQREFEEYIRDKYITAKADFRTLLKETKFITYR 1032
Query: 153 SLGLLHENENYLSEIEEILRNDKRFLSLEHIPEERTQIILTYLDELEKRGPPPPPTASEP 212
S L+ E++ +L ++E+IL+NDKR+L L+ +PEER ++I+ Y+D+L++RGPPPPPTASEP
Sbjct: 1033 SKKLIQESDQHLKDVEKILQNDKRYLVLDCVPEERRKLIVAYVDDLDRRGPPPPPTASEP 1092
Query: 213 NRR 215
RR
Sbjct: 1093 TRR 1095
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 15/107 (14%)
Query: 33 NSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTKKKREK-----------F 81
N T+ E + KD R+ + + + ++E LFNE + KK++E F
Sbjct: 742 NPRATFSEFAAKHAKDSRFKAIEKMK--DREALFNEFVAAARKKEKEDSKTRGEKIKSDF 799
Query: 82 RELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYL 128
ELL+ + S W ++ ++ DPRY SS R E FK Y+
Sbjct: 800 FELLS-NHHLDSQSRWSKVKDKVESDPRYKAVDSSSMR-EDLFKQYI 844
>sp|Q8CGF7|TCRG1_MOUSE Transcription elongation regulator 1 OS=Mus musculus GN=Tcerg1 PE=1
SV=2
Length = 1100
Score = 241 bits (616), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 128/243 (52%), Positives = 184/243 (75%), Gaps = 29/243 (11%)
Query: 2 NETDKDADKKARQEASLREREKEVQRTLA-----------------------------VR 32
+E +K+ +++AR EASLRERE+EVQ+ + VR
Sbjct: 855 SEKEKELERQARIEASLREREREVQKARSEQTKEIDREREQHKREEAIQNFKALLSDMVR 914
Query: 33 NSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTKKKREKFRELLNETSEVT 92
+S+++W + +R LRKDHRW+S LL+R+EKEKLFNEHIE LTKKKRE FR+LL+ETS +T
Sbjct: 915 SSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLFNEHIEALTKKKREHFRQLLDETSAIT 974
Query: 93 LSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTSTAKAEFRELLQETKLISHK 152
L+S+WK+++K+IKEDPR KFSSSDR+ +REF++Y++DK TAKA+FR LL+ETK I+++
Sbjct: 975 LTSTWKEVKKIIKEDPRCIKFSSSDRKKQREFEEYIRDKYITAKADFRTLLKETKFITYR 1034
Query: 153 SLGLLHENENYLSEIEEILRNDKRFLSLEHIPEERTQIILTYLDELEKRGPPPPPTASEP 212
S L+ E++ +L ++E+IL+NDKR+L L+ +PEER ++I+ Y+D+L++RGPPPPPTASEP
Sbjct: 1035 SKKLIQESDQHLKDVEKILQNDKRYLVLDCVPEERRKLIVAYVDDLDRRGPPPPPTASEP 1094
Query: 213 NRR 215
RR
Sbjct: 1095 TRR 1097
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 15/107 (14%)
Query: 33 NSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTKKKREK-----------F 81
N T+ E + KD R+ + + + ++E LFNE + KK++E F
Sbjct: 744 NPRATFSEFAAKHAKDSRFKAIEKMK--DREALFNEFVAAARKKEKEDSKTRGEKIKSDF 801
Query: 82 RELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYL 128
ELL+ + S W ++ ++ DPRY SS R E FK Y+
Sbjct: 802 FELLS-NHHLDSQSRWSKVKDKVESDPRYKAVDSSSMR-EDLFKQYI 846
>sp|Q13017|RHG05_HUMAN Rho GTPase-activating protein 5 OS=Homo sapiens GN=ARHGAP5 PE=1
SV=2
Length = 1502
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 87/184 (47%), Gaps = 10/184 (5%)
Query: 18 LREREKEVQRTLAVRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTKKK 77
L E+ + Q V + W E + + R DLL E EK++ H++ L +K
Sbjct: 367 LMEKRADFQLCFVVL-EKTPWDETDHIDKINDRRIPFDLLSTLEAEKVYQNHVQHLISEK 425
Query: 78 R-----EKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKT 132
R EKF++ L + ++ W+++ + ED Y + +D + + + ++
Sbjct: 426 RRVEMKEKFKKTLEKIQFISPGQPWEEVMCFVMEDEAYKYITEADSK--EVYGRHQREIV 483
Query: 133 STAKAEFRELLQE-TKLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEHIPEERTQII 191
AK EF+E+L E ++L L ++ +SEI +L + R+ +L+ + +R ++
Sbjct: 484 EKAKEEFQEMLFEHSELFYDLDLNATPSSDK-MSEIHTVLSEEPRYKALQKLAPDRESLL 542
Query: 192 LTYL 195
L ++
Sbjct: 543 LKHI 546
>sp|P97393|RHG05_MOUSE Rho GTPase-activating protein 5 OS=Mus musculus GN=Arhgap5 PE=2
SV=2
Length = 1501
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 87/184 (47%), Gaps = 10/184 (5%)
Query: 18 LREREKEVQRTLAVRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTKKK 77
L E+ + Q V + W E + + R DLL E EK++ H++ L +K
Sbjct: 367 LMEKRADFQLCFVVL-EKTPWDETDHIDKINDRRIPFDLLSTLEAEKVYQNHVQHLISEK 425
Query: 78 R-----EKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKT 132
R EKF++ L + ++ W+++ + ED + + +D + + + ++
Sbjct: 426 RRIEMKEKFKKTLEKIQFISPGQPWEEVMCFVMEDEAFKYITEADSK--EVYGRHQREIV 483
Query: 133 STAKAEFRELLQE-TKLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEHIPEERTQII 191
AK EF+E+L E ++L L ++ +SEI +L + R+ +L+ + +R ++
Sbjct: 484 EKAKEEFQEMLFEHSELFYDLDLNATPSSDK-MSEIHTVLSEEPRYKALQKLAPDRESLL 542
Query: 192 LTYL 195
L ++
Sbjct: 543 LKHI 546
>sp|Q9NRY4|RHG35_HUMAN Rho GTPase-activating protein 35 OS=Homo sapiens GN=ARHGAP35 PE=1
SV=3
Length = 1499
Score = 38.9 bits (89), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 69/146 (47%), Gaps = 7/146 (4%)
Query: 55 DLLDRDEKEKLFNEHIEELTKKK-----REKFRELLNETSEVTLSSSWKDIRKLIKEDPR 109
DL+D E+L+ H+E+L ++ R F+E L + +T W++ R I +
Sbjct: 405 DLMDTVPAEQLYEAHLEKLRNERKRVEMRRAFKENLETSPFITPGKPWEEARSFIMNEDF 464
Query: 110 YTKFSSSDRRCEREFKDYLKDKTSTAKAEFRELLQETKLISHKSLGLLHENENYLSEIEE 169
Y S + + K AK EF+ELL E + ++ ++ + I++
Sbjct: 465 YQWLEESVYM--DIYGKHQKQIIDKAKEEFQELLLEYSELFYELELDAKPSKEKMGVIQD 522
Query: 170 ILRNDKRFLSLEHIPEERTQIILTYL 195
+L ++RF +L+ + ER +IL ++
Sbjct: 523 VLGEEQRFKALQKLQAERDALILKHI 548
>sp|P83509|RHG35_CANFA Rho GTPase-activating protein 35 OS=Canis familiaris GN=ARHGAP35
PE=2 SV=1
Length = 1500
Score = 38.9 bits (89), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 69/146 (47%), Gaps = 7/146 (4%)
Query: 55 DLLDRDEKEKLFNEHIEELTKKK-----REKFRELLNETSEVTLSSSWKDIRKLIKEDPR 109
DL+D E+L+ H+E+L ++ R F+E L + +T W++ R I +
Sbjct: 405 DLMDTVPAEQLYEAHLEKLRNERKRAEMRRAFKENLETSPFITPGKPWEEARSFIMNEDF 464
Query: 110 YTKFSSSDRRCEREFKDYLKDKTSTAKAEFRELLQETKLISHKSLGLLHENENYLSEIEE 169
Y S + + K AK EF+ELL E + ++ ++ + I++
Sbjct: 465 YQWLEESVYM--DIYGKHQKQIIDKAKEEFQELLLEYSELFYELELDAKPSKEKMGVIQD 522
Query: 170 ILRNDKRFLSLEHIPEERTQIILTYL 195
+L ++RF +L+ + ER +IL ++
Sbjct: 523 VLGEEQRFKALQKLQAERDALILKHI 548
>sp|Q9VX32|RG190_DROME Rho GTPase-activating protein 190 OS=Drosophila melanogaster
GN=RhoGAPp190 PE=1 SV=2
Length = 1561
Score = 38.9 bits (89), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 71/151 (47%), Gaps = 17/151 (11%)
Query: 55 DLLDRDEKEKLFNEHIEELTKKKR-----EKFRELLNETSEVTLSSSWKDIRKLIKEDPR 109
D+L+ E E +F ++ + + K+ ++F+ LL E+ VT ++R L
Sbjct: 402 DVLETSEAETVFRNYLNSVQQDKKKIGWKQQFKMLLEESGFVTPGKQLSEVRVLFMGREC 461
Query: 110 YTKFSSSDRRCEREFKDYLKDKTSTAKAEFRELLQETKLISHKSLGLLHENENYLSE--- 166
+ S D C++ + + D +K F ELL E H L +N + +++
Sbjct: 462 FEALSEHD--CQQIYDIHQDDIIEKSKQNFVELLLE-----HAQYFLQFKNVDNITQEDV 514
Query: 167 --IEEILRNDKRFLSLEHIPEERTQIILTYL 195
I ++++ D R+ L+ + +ER +++ +L
Sbjct: 515 RQITDVIQEDSRYKMLDRLDQERRLMLVQHL 545
>sp|P81128|RHG35_RAT Rho GTPase-activating protein 35 OS=Rattus norvegicus GN=Arhgap35
PE=1 SV=2
Length = 1513
Score = 38.5 bits (88), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 69/146 (47%), Gaps = 7/146 (4%)
Query: 55 DLLDRDEKEKLFNEHIEELTKKK-----REKFRELLNETSEVTLSSSWKDIRKLIKEDPR 109
DL+D E+L+ H+E+L ++ R F+E L + +T W++ R I +
Sbjct: 405 DLMDTVPAEQLYETHLEKLRNERKRAEMRRAFKENLETSPFITPGKPWEEARSFIMNEDF 464
Query: 110 YTKFSSSDRRCEREFKDYLKDKTSTAKAEFRELLQETKLISHKSLGLLHENENYLSEIEE 169
Y S + + K AK EF+ELL E + ++ ++ + I++
Sbjct: 465 YQWLEESVYM--DIYGKHQKQIIDRAKEEFQELLLEYSELFYELELDAKPSKEKMGVIQD 522
Query: 170 ILRNDKRFLSLEHIPEERTQIILTYL 195
+L ++RF +L+ + ER +IL ++
Sbjct: 523 VLGEEQRFKALQKLQAERDALILKHI 548
>sp|Q91YM2|RHG35_MOUSE Rho GTPase-activating protein 35 OS=Mus musculus GN=Arhgap35 PE=1
SV=3
Length = 1499
Score = 38.5 bits (88), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 69/146 (47%), Gaps = 7/146 (4%)
Query: 55 DLLDRDEKEKLFNEHIEELTKKK-----REKFRELLNETSEVTLSSSWKDIRKLIKEDPR 109
DL+D E+L+ H+E+L ++ R F+E L + +T W++ R I +
Sbjct: 405 DLMDTVPAEQLYETHLEKLRNERKRAEMRRAFKENLETSPFITPGKPWEEARSFIMNEDF 464
Query: 110 YTKFSSSDRRCEREFKDYLKDKTSTAKAEFRELLQETKLISHKSLGLLHENENYLSEIEE 169
Y S + + K AK EF+ELL E + ++ ++ + I++
Sbjct: 465 YQWLEESVYM--DIYGKHQKQIIDRAKEEFQELLLEYSELFYELELDAKPSKEKMGVIQD 522
Query: 170 ILRNDKRFLSLEHIPEERTQIILTYL 195
+L ++RF +L+ + ER +IL ++
Sbjct: 523 VLGEEQRFKALQKLQAERDALILKHI 548
>sp|F4JCC1|PR35B_ARATH Pre-mRNA-processing protein 40B OS=Arabidopsis thaliana GN=PRP40B
PE=1 SV=1
Length = 992
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 13/89 (14%)
Query: 33 NSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHI---------EELTKKKR--EKF 81
S+ TW +A R++ D R+ + L E+++ FNE + E L ++K+ E F
Sbjct: 467 GSDWTWEQAMREIINDKRYGALRTLG--ERKQAFNEFLLQTKRAAEEERLARQKKLYEDF 524
Query: 82 RELLNETSEVTLSSSWKDIRKLIKEDPRY 110
+ +L E E+T S+ W + ++D R+
Sbjct: 525 KRMLEECVELTPSTRWSKTVTMFEDDERF 553
Score = 31.2 bits (69), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 73/176 (41%), Gaps = 30/176 (17%)
Query: 38 WREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELT------------------KKKRE 79
WR+ + +L D R + +D+ E +F E++ +L +K R+
Sbjct: 608 WRKVQDRLEVDERCSRLEKIDQLE---IFQEYLRDLEREEEEKKKIQKEELKKVERKHRD 664
Query: 80 KFRELLNE---TSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTSTAK 136
+F LL+E T E+T + W+D +K+ P Y+ +S+ KD +D K
Sbjct: 665 EFHGLLDEHIATGELTAKTIWRDYLMKVKDLPVYSAIASNSSGATP--KDLFEDAVEDLK 722
Query: 137 AEFRELLQETKLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEHIPEERTQIIL 192
EL + K + L L N + S +E + + IP+ R +++
Sbjct: 723 KRDHELKSQIKDV----LKLRKVNLSAGSTFDEFKVSISEDIGFPLIPDVRLKLVF 774
>sp|B6EUA9|PR40A_ARATH Pre-mRNA-processing protein 40A OS=Arabidopsis thaliana GN=PRP40A
PE=1 SV=1
Length = 958
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 18/109 (16%)
Query: 33 NSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEEL-----------TKKKREKF 81
+S+ TW + +++ D R+ + L E+++ FNE++ + KK RE+F
Sbjct: 421 HSDWTWEQTLKEIVHDKRYGALRTLG--ERKQAFNEYLGQRKKVEAEERRRRQKKAREEF 478
Query: 82 RELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCERE--FKDYL 128
++L E E++ S W L + D R F + DR +RE F +Y+
Sbjct: 479 VKMLEECEELSSSLKWSKAMSLFENDQR---FKAVDRPRDREDLFDNYI 524
Score = 35.0 bits (79), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 15/107 (14%)
Query: 33 NSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTKKKREK-----------F 81
+S L W +A D R+ + D RD +E LF+ +I EL +K+REK +
Sbjct: 489 SSSLKWSKAMSLFENDQRFKAVD-RPRD-REDLFDNYIVELERKEREKAAEEHRQYMADY 546
Query: 82 RELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYL 128
R+ L + + W+ I+ +++D R + DR F++Y+
Sbjct: 547 RKFLETCDYIKAGTQWRKIQDRLEDDDRCSCLEKIDRLI--GFEEYI 591
>sp|Q9LT25|PR40C_ARATH Pre-mRNA-processing protein 40C OS=Arabidopsis thaliana GN=MED35C
PE=1 SV=1
Length = 835
Score = 35.4 bits (80), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 57/115 (49%), Gaps = 15/115 (13%)
Query: 38 WREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTKKKREKFRELLNETS-------- 89
+R K++ D R+++ ++R E+E L NE + L + +K +E+ +
Sbjct: 546 YRAFKKKWGNDLRFEA---IERKEREGLLNERVLSLKRSAEQKAQEIRAAAASDFKTMLR 602
Query: 90 --EVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTSTAKAEFREL 142
E++++S W ++ ++ +PRY + DR E + +Y+ + + + + E+
Sbjct: 603 EREISINSHWSKVKDSLRNEPRYRSVAHEDR--EVFYYEYIAELKAAQRGDDHEM 655
>sp|O14176|PRP40_SCHPO Pre-mRNA-processing protein prp40 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=prp40 PE=1 SV=1
Length = 695
Score = 35.4 bits (80), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
Query: 73 LTKKKREKFRELLNE---TSEVTLSSSWKDIRKLIKEDPRY 110
+ +K R+ FR LL + ++TL + WK++ +IK+DPRY
Sbjct: 404 IERKNRDAFRALLQDLRVQKKITLRTKWKELYPIIKDDPRY 444
>sp|P33203|PRP40_YEAST Pre-mRNA-processing protein PRP40 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PRP40 PE=1 SV=1
Length = 583
Score = 34.7 bits (78), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 63 EKLFNEHIEELTKKKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCER 122
++L EH E T K +E F+++L S + + W ++LI ++P Y +++ +
Sbjct: 192 DQLLKEHNE--TSKFKEAFQKMLQNNSHIKYYTRWPTAKRLIADEPIYKHSVVNEKTKRQ 249
Query: 123 EFKDYLKDKTSTAK 136
F+DY+ T K
Sbjct: 250 TFQDYIDTLIDTQK 263
Score = 34.3 bits (77), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 3/102 (2%)
Query: 78 REKFRELLNETS-EVTLSSSWKDIRKLIKEDPRYTK-FSSSDRRCEREFKDYLKDKTSTA 135
R+ F+ LL E ++ ++ W DI IK DPR+ + C F D++ ++
Sbjct: 359 RDNFKSLLREVPIKIKANTRWSDIYPHIKSDPRFLHMLGRNGSSCLDLFLDFVDEQRMYI 418
Query: 136 KAEFRELLQETKLISHKSLGLLHENENYLSEIEEILRNDKRF 177
A+ R + Q+T + + +E IE++L ND++F
Sbjct: 419 FAQ-RSIAQQTLIDQNFEWNDADSDEITKQNIEKVLENDRKF 459
>sp|O75400|PR40A_HUMAN Pre-mRNA-processing factor 40 homolog A OS=Homo sapiens GN=PRPF40A
PE=1 SV=2
Length = 957
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 11/77 (14%)
Query: 78 REKFRELLNETSEVTLSSSWKDIRKLIKEDPRYT----------KFSSSDRRCEREFKDY 127
++ F+ELL E V ++SW+ K+I DPRY+ F++ + E+E K+
Sbjct: 397 KQAFKELLKE-KRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEE 455
Query: 128 LKDKTSTAKAEFRELLQ 144
+ K AK F+ L+
Sbjct: 456 ARSKYKEAKESFQRFLE 472
>sp|Q9R1C7|PR40A_MOUSE Pre-mRNA-processing factor 40 homolog A OS=Mus musculus GN=Prpf40a
PE=1 SV=1
Length = 953
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 11/77 (14%)
Query: 78 REKFRELLNETSEVTLSSSWKDIRKLIKEDPRYT----------KFSSSDRRCEREFKDY 127
++ F+ELL E V ++SW+ K+I DPRY+ F++ + E+E K+
Sbjct: 393 KQAFKELLKE-KRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEE 451
Query: 128 LKDKTSTAKAEFRELLQ 144
+ K AK F+ L+
Sbjct: 452 ARSKYKEAKESFQRFLE 468
>sp|Q3B807|TCRGL_MOUSE Transcription elongation regulator 1-like protein OS=Mus musculus
GN=Tcerg1l PE=2 SV=3
Length = 590
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 14/79 (17%)
Query: 81 FRELLNETSEVTLSSSW-KDIRKLIKEDPRYTKFSSSDR----------RCEREFKDYLK 129
FR++L E V+ S+W K++ K++ DPRY +S +R R + E+K+ K
Sbjct: 461 FRDMLLERG-VSAFSTWEKELHKIVF-DPRYLLLNSEERKQIFEQFVKTRIKEEYKER-K 517
Query: 130 DKTSTAKAEFRELLQETKL 148
K AK EF++LL+E+K+
Sbjct: 518 SKLLLAKEEFKKLLEESKV 536
>sp|P34600|YO61_CAEEL WW domain-containing protein ZK1098.1 OS=Caenorhabditis elegans
GN=ZK1098.1 PE=1 SV=2
Length = 724
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 72 ELTKKKREKFRELLNET---SEVTLSSSWKDIRKLIKEDPRY 110
EL K++ E+FRELL + ++T + +W K I+ DPR+
Sbjct: 222 ELKKRQSERFRELLRDKYNDGKITTNCNWDQAVKWIQNDPRF 263
>sp|Q9ZF25|IF2_ENTCL Translation initiation factor IF-2 OS=Enterobacter cloacae GN=infB
PE=3 SV=1
Length = 897
Score = 31.2 bits (69), Expect = 6.3, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 8/96 (8%)
Query: 30 AVRNSELTWREAKRQLRKDHRWDSADLLDRD--EKEKLFNEHIEELTKKKREKFRELLNE 87
A R +EL +A+R+ + + D++D RD EK+K+ N+ +E+TK + + NE
Sbjct: 125 AKREAEL---KAEREAAEKAKRDASDKAKRDAAEKDKVSNQQTDEMTKTAQTEKARRENE 181
Query: 88 TSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCERE 123
+E+ + ++ R+ ++ED R + + RR E
Sbjct: 182 AAELKRKAE-EEARRKLEEDAR--RVAEEARRMAEE 214
>sp|Q0I3P5|IF2_HAES1 Translation initiation factor IF-2 OS=Haemophilus somnus (strain
129Pt) GN=infB PE=3 SV=1
Length = 831
Score = 31.2 bits (69), Expect = 6.9, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 57/111 (51%), Gaps = 4/111 (3%)
Query: 7 DADKKARQEASLREREKEVQRTLAVRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLF 66
D ++KA+++A L+ +E+ +R + +E REA++ + + + A + E+ K
Sbjct: 49 DLERKAQEQAKLKAKEEAEKRAAEEKLAEKAKREAEKAKAEQIKVEKA----KAEQAKAS 104
Query: 67 NEHIEELTKKKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSD 117
++++ +K+R + EL + EV + + +K +E RY F SD
Sbjct: 105 KKNVDVEKEKRRAEEAELRRKADEVARQKAEEKAQKAAEEAKRYADFDDSD 155
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.130 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,888,919
Number of Sequences: 539616
Number of extensions: 4232349
Number of successful extensions: 21210
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 771
Number of HSP's that attempted gapping in prelim test: 19580
Number of HSP's gapped (non-prelim): 1874
length of query: 242
length of database: 191,569,459
effective HSP length: 114
effective length of query: 128
effective length of database: 130,053,235
effective search space: 16646814080
effective search space used: 16646814080
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)