Query psy9283
Match_columns 242
No_of_seqs 119 out of 505
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 23:30:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9283.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9283hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0155|consensus 99.9 6.1E-22 1.3E-26 185.3 15.7 169 17-201 240-432 (617)
2 KOG0155|consensus 99.9 3.5E-22 7.5E-27 186.9 12.6 148 6-153 437-613 (617)
3 COG5104 PRP40 Splicing factor 99.8 1.4E-19 3.1E-24 167.0 15.2 170 20-201 147-423 (590)
4 KOG0152|consensus 99.5 3.4E-14 7.4E-19 135.1 6.1 173 31-216 40-312 (463)
5 KOG4271|consensus 99.3 8.9E-12 1.9E-16 123.9 10.1 188 37-226 141-358 (1100)
6 PF01846 FF: FF domain; Inter 99.2 5.2E-11 1.1E-15 80.2 6.0 51 76-127 1-51 (51)
7 smart00441 FF Contains two con 99.1 1.6E-10 3.5E-15 78.8 5.9 53 76-129 2-54 (55)
8 PF01846 FF: FF domain; Inter 99.1 1.7E-10 3.7E-15 77.7 5.7 51 134-194 1-51 (51)
9 smart00441 FF Contains two con 99.0 5.6E-10 1.2E-14 76.1 5.9 53 134-196 2-54 (55)
10 COG5104 PRP40 Splicing factor 98.7 2.4E-07 5.2E-12 86.7 11.8 111 77-199 148-269 (590)
11 KOG0152|consensus 98.5 2E-07 4.3E-12 89.2 8.0 137 77-226 28-175 (463)
12 KOG4271|consensus 96.9 0.0075 1.6E-07 61.6 10.7 150 21-181 54-248 (1100)
13 KOG4031|consensus 42.8 1.1E+02 0.0023 26.7 6.7 38 77-114 159-196 (216)
14 PHA03298 envelope glycoprotein 35.8 13 0.00028 30.1 0.2 20 221-241 63-82 (167)
15 PF03980 Nnf1: Nnf1 ; InterPr 23.8 3.2E+02 0.0069 20.5 6.6 30 120-149 4-33 (109)
16 PF14473 RD3: RD3 protein 20.2 2.9E+02 0.0063 22.3 5.3 66 13-89 37-107 (133)
No 1
>KOG0155|consensus
Probab=99.88 E-value=6.1e-22 Score=185.33 Aligned_cols=169 Identities=22% Similarity=0.441 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHHhc--CCCCCCCHHHHHHHHhhCCCcccCCCCCHHHHHHHHHHHHHHHHHH-----------HHHHHHH
Q psy9283 17 SLREREKEVQRTLA--VRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTKK-----------KREKFRE 83 (242)
Q Consensus 17 ~~reRe~e~~~~~~--~~~~~~sW~ea~~~l~~DpR~~~~~~L~~~ere~lF~eyi~~l~~k-----------~r~~F~~ 83 (242)
.+.+|-.+|..+|. +|++..+|+...+.|..||||..|. ..+|+++|++||....+. ..+.|.+
T Consensus 240 plEer~kqFkEMLkERgVsafStWEkel~KivfDpR~~~l~---s~~Rk~vFeqyvKtr~eee~~ekr~r~k~AkEeF~k 316 (617)
T KOG0155|consen 240 PLEERRKQFKEMLKERGVSAFSTWEKELPKIVFDPRYLLLN---SGERKQVFEQYVKTRAEEEKREKRKRRKEAKEEFKK 316 (617)
T ss_pred CHHHHHHHHHHHHHhcCCcccchHHHhhhhccCCcceeccC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999998 9999999999999999999999875 459999999999975432 2389999
Q ss_pred HHhhcCCCCCCCCHHHHHHHHhcChhhccCCCChHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhhccccccc
Q psy9283 84 LLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTS-----------TAKAEFRELLQETKLISHK 152 (242)
Q Consensus 84 LL~e~~~i~~~t~W~ev~~~i~~Dprf~~l~~~d~~re~lF~eyi~~l~~-----------kare~F~elL~E~~~i~~~ 152 (242)
||.++. +++.++|..+...+.+|+||++++.+ +.+|.+|++||-.+.+ +++.+|..||.+.. |+..
T Consensus 317 LL~e~~-~n~rs~y~~F~~K~gkD~Rfkaver~-rDrE~lFNeFv~~lkkkekd~~r~~kek~ks~fv~ll~e~~-l~~~ 393 (617)
T KOG0155|consen 317 LLAEAE-LNGRSSYSSFKSKYGKDSRFKAVERN-RDREDLFNEFVGELKKKEKDKKRAKKEKLKSDFVKLLEEQE-LTRK 393 (617)
T ss_pred HHHhCc-CCcccchHHHHHHhccCchhhhhhhh-hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhcccch-hhhh
Confidence 999988 89999999999999999999999765 6789999999998653 68889999999887 8888
Q ss_pred cccccccccccHHHHHHHHhcChhhhhccCCchHHHHHHHHHHHHHHhc
Q psy9283 153 SLGLLHENENYLSEIEEILRNDKRFLSLEHIPEERTQIILTYLDELEKR 201 (242)
Q Consensus 153 t~~~i~e~~~~w~ei~~~L~~D~Ry~~l~~~~~eR~~Lf~dyi~~L~~~ 201 (242)
| .|+.++..|.+++||.+|++. +.|+.||.+||..|...
T Consensus 394 S---------~ws~tk~~le~eery~aldsS-s~re~lf~eyia~l~~~ 432 (617)
T KOG0155|consen 394 S---------KWSKTKDTLEDEERYIALDSS-STRESLFREYIANLGDE 432 (617)
T ss_pred h---------hhhHHHHHhcccHHHhhhccc-chHHHHHHHHHHHHHhh
Confidence 8 999999999999999999974 57899999999999764
No 2
>KOG0155|consensus
Probab=99.88 E-value=3.5e-22 Score=186.95 Aligned_cols=148 Identities=44% Similarity=0.824 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-----------------------------CCCCCCCHHHHHHHHhhCCCcccCCC
Q psy9283 6 KDADKKARQEASLREREKEVQRTLA-----------------------------VRNSELTWREAKRQLRKDHRWDSADL 56 (242)
Q Consensus 6 ~~~~k~~~~e~~~reRe~e~~~~~~-----------------------------~~~~~~sW~ea~~~l~~DpR~~~~~~ 56 (242)
.+.+|..+.++.||+|+.+|+.+++ +.++..+|.++.+.|.+||||..++.
T Consensus 437 ~e~er~~r~ea~lrererev~k~~~~q~~e~~rerek~k~~e~~~~y~all~d~irs~e~sw~e~rrilrkd~r~as~~~ 516 (617)
T KOG0155|consen 437 IEQEREKRLEAQLREREREVEKELGNQLRERTREREKQKRGEAEDTYRALLIDLIRSTENSWHEARRILRKDERYASCDM 516 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHhHHHhhcccccccCcc
Confidence 4788899999999999999997766 99999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHhcChhhccCCCChHHHHHHHHHHHHHHHHHHH
Q psy9283 57 LDRDEKEKLFNEHIEELTKKKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTSTAK 136 (242)
Q Consensus 57 L~~~ere~lF~eyi~~l~~k~r~~F~~LL~e~~~i~~~t~W~ev~~~i~~Dprf~~l~~~d~~re~lF~eyi~~l~~kar 136 (242)
|...+++.||++||..|..++|.+|.+||+++..|++.+.|.+++++|..+++|..+.++++..+.-|++|+.....-+.
T Consensus 517 le~~~keklf~dhiksl~~k~re~f~qllde~~~it~~~~w~e~kkii~e~~t~~k~~ss~rk~~r~f~d~~~~~~~~~~ 596 (617)
T KOG0155|consen 517 LEKTRKEKLFDDHIKSLERKRREAFFQLLDEHEKITPMMRWREAKKIIQEEETFVKIASSERKVERDFRDWQERRHDHLT 596 (617)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHhhHHHhhhHHHHHHHhhhhhhhccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888889999999999999999
Q ss_pred HHHHHHHhhcccccccc
Q psy9283 137 AEFRELLQETKLISHKS 153 (242)
Q Consensus 137 e~F~elL~E~~~i~~~t 153 (242)
++|++||.|+.+|++.+
T Consensus 597 d~fr~~l~etk~it~~s 613 (617)
T KOG0155|consen 597 DEFREMLSETKIITHKS 613 (617)
T ss_pred HHHHHHHHhhhHHhhhh
Confidence 99999999999999987
No 3
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=99.82 E-value=1.4e-19 Score=166.97 Aligned_cols=170 Identities=22% Similarity=0.354 Sum_probs=146.4
Q ss_pred HHHHHHHHHhc--CCCCCCCHHHHHHHHhhCCCcccCCCCCHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHh
Q psy9283 20 EREKEVQRTLA--VRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTKK-----------KREKFRELLN 86 (242)
Q Consensus 20 eRe~e~~~~~~--~~~~~~sW~ea~~~l~~DpR~~~~~~L~~~ere~lF~eyi~~l~~k-----------~r~~F~~LL~ 86 (242)
+-|.++.-+|. .|+|+|+|+.++..| -||||..+.. ++-.|+.+|..|+.+..+. -+.+|..||.
T Consensus 147 ~AEk~F~~~L~e~qVdstw~~~r~i~el-~D~r~~~V~~-DP~~rK~~f~kY~~n~~~dq~~~e~n~~~k~~~ef~kml~ 224 (590)
T COG5104 147 EAEKEFITMLKENQVDSTWPIFRAIEEL-RDPRYWMVDT-DPLWRKDLFKKYFENQEKDQREEEENKQRKYINEFCKMLA 224 (590)
T ss_pred HHHHHHHHHHhhccCCCcccHHHHHHHh-cCccceeecC-ChHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHhc
Confidence 34555666666 999999999999999 8999998865 7889999999999875432 2489999999
Q ss_pred hcCCCCCCCCHHHHHHHHhcChhhccCCCChHHHHHHHHHHHHHHH----------------------------------
Q psy9283 87 ETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKT---------------------------------- 132 (242)
Q Consensus 87 e~~~i~~~t~W~ev~~~i~~Dprf~~l~~~d~~re~lF~eyi~~l~---------------------------------- 132 (242)
....|+..|.|-+++..|..+|.|+++ .+..+..++|.+|++.+.
T Consensus 225 ~n~~I~~yT~w~t~k~~fs~hP~y~s~-~nE~~krQ~F~~ykdkl~~~ek~~~k~~~~~al~~l~e~lr~l~~E~f~~w~ 303 (590)
T COG5104 225 GNSHIKYYTDWFTFKSIFSKHPYYSSV-VNEKTKRQTFQKYKDKLGCYEKYVGKHMGGTALGRLEEVLRSLGSETFIIWL 303 (590)
T ss_pred CCCccceeehhhhHHhhhccCcchhhh-cchHHHHHHHHHHHHHhhhHHHHHHHhhcccchHHHHHHHHhcCcccchhhh
Confidence 988899999999999999999999987 455678999999998711
Q ss_pred --------------------------------------------------------HHHHHHHHHHHhhc---ccccccc
Q psy9283 133 --------------------------------------------------------STAKAEFRELLQET---KLISHKS 153 (242)
Q Consensus 133 --------------------------------------------------------~kare~F~elL~E~---~~i~~~t 153 (242)
+.+|++|+.||.+. +.|+.++
T Consensus 304 l~~~~fd~~~ry~~n~~mk~l~~~d~L~~f~~~v~~lE~el~~~~~e~k~~~~~~~r~~rd~FrtLLr~l~~~~ki~~R~ 383 (590)
T COG5104 304 LNHYVFDSVVRYLKNKEMKPLDRKDILFSFIRYVRRLEKELLSAIEERKAAAAQNARHHRDEFRTLLRKLYSEGKIYYRM 383 (590)
T ss_pred hhhhhhcccHHHHhhcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhh
Confidence 15889999999987 7788899
Q ss_pred ccccccccccHHHHHHHHhcChhhhhccCCchHH-HHHHHHHHHHHHhc
Q psy9283 154 LGLLHENENYLSEIEEILRNDKRFLSLEHIPEER-TQIILTYLDELEKR 201 (242)
Q Consensus 154 ~~~i~e~~~~w~ei~~~L~~D~Ry~~l~~~~~eR-~~Lf~dyi~~L~~~ 201 (242)
+|++++++|++||||.+|.|..|+. ++||.|+|-+|+..
T Consensus 384 ---------kwk~~yp~iKddprfLnlLGr~gsspldlf~D~ivDlenm 423 (590)
T COG5104 384 ---------KWKNAYPLIKDDPRFLNLLGRTGSSPLDLFFDFIVDLENM 423 (590)
T ss_pred ---------hhhhhcccccCCHHHHHHhccCCCChHHHHHHHHHhHHHH
Confidence 9999999999999999999987666 99999999988754
No 4
>KOG0152|consensus
Probab=99.48 E-value=3.4e-14 Score=135.13 Aligned_cols=173 Identities=23% Similarity=0.384 Sum_probs=150.1
Q ss_pred CCCCCCCHHHHHHHHhhCCCcccCCCCCHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhhcCCCCCCCCHHH
Q psy9283 31 VRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELT-----------KKKREKFRELLNETSEVTLSSSWKD 99 (242)
Q Consensus 31 ~~~~~~sW~ea~~~l~~DpR~~~~~~L~~~ere~lF~eyi~~l~-----------~k~r~~F~~LL~e~~~i~~~t~W~e 99 (242)
.++++|+|+++++.+++||||.++. +..+++++|+.|+.... ++.+..|.+||.++..++..+.|.+
T Consensus 40 ~v~s~~n~~q~~~~~~~d~~~~~~~--~~~~~kqafn~~~~qr~~d~~~~~~~~~kk~k~d~~~~l~e~~~~~~~~~~~~ 117 (463)
T KOG0152|consen 40 NVPSNWNWDQAVRLISNDKRYNALR--DSSERKQAFNGYTLQRGRDRVLEESLDVKKAKEDFLQMLQEESKYKSSTEWKT 117 (463)
T ss_pred CCCCCCCHHHHHHhccCCCcccccc--CchhhHHhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhHhhcccccccccccc
Confidence 9999999999999999999999988 55999999999998821 3456999999999999999999999
Q ss_pred HHHHHhcChhhccCCCChHHHHHHHHHHHHHHH-----------------------------------------------
Q psy9283 100 IRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKT----------------------------------------------- 132 (242)
Q Consensus 100 v~~~i~~Dprf~~l~~~d~~re~lF~eyi~~l~----------------------------------------------- 132 (242)
+...+.+||+|+++...+ +..+|.+|+.++.
T Consensus 118 ~~~~fa~~p~~~~~~~~~--~r~~~~nci~el~~~ek~k~~~~r~r~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 195 (463)
T KOG0152|consen 118 AKELFAGDPRWSEHISED--GRKIYENCITELSQREKEKKLEDRKRNLAADKHLLNSESSIGLDRDWRRAQGRLTEDSGF 195 (463)
T ss_pred cccccccccchhhccchh--hHHHHHHHHHHHHHhhhHHHHHHHHhhhHhhhcchhccccccccchHHHHhhhhhccccc
Confidence 999999999999986553 6799999999722
Q ss_pred --------------------------------------HHHHHHHHHHHhhcc---ccccccccccccccccHHHHHHHH
Q psy9283 133 --------------------------------------STAKAEFRELLQETK---LISHKSLGLLHENENYLSEIEEIL 171 (242)
Q Consensus 133 --------------------------------------~kare~F~elL~E~~---~i~~~t~~~i~e~~~~w~ei~~~L 171 (242)
++++++|..+|.++. .|+..| .|.++.+.+
T Consensus 196 ~~~ldked~l~~~e~~i~~~e~e~~~~~~~~~~~~~~~Rk~rD~~~~lL~~~~~~~ki~s~T---------~w~~~~~~i 266 (463)
T KOG0152|consen 196 SEDLDKEDALINFEEHIKDLEKEEDEKEQERKRNKRQERKNRDAFRSLLQELPATGKITSTT---------GWEDLFPSI 266 (463)
T ss_pred ccccchHHhhhhHHHHHhHHHHhhhhhcchhhhhhhhhhhhhhhhhhHHHhhcccccccccc---------CCccccchh
Confidence 157778888888874 788888 999999999
Q ss_pred hcChhhhhccCCchHH-HHHHHHHHHHHHhcCCCCCCCCCCccccc
Q psy9283 172 RNDKRFLSLEHIPEER-TQIILTYLDELEKRGPPPPPTASEPNRRL 216 (242)
Q Consensus 172 ~~D~Ry~~l~~~~~eR-~~Lf~dyi~~L~~~~~~~~~~~~~~~~~~ 216 (242)
..|+||..+...+|+. +.+|.|+|+.|.....+-+|-..+...-+
T Consensus 267 ~~~~r~~~~ln~sgstp~dlf~d~ve~l~~~~~~~~~~i~~~~~~~ 312 (463)
T KOG0152|consen 267 KDDPRSANALNQSGSTPLDLFEDPVEPLEPRYYEYPPLIKDCLKER 312 (463)
T ss_pred cCCcchHhhcCCCCCChhhcccccccccccccccchHHHHHHHHhh
Confidence 9999999999888888 99999999999998888887777655433
No 5
>KOG4271|consensus
Probab=99.30 E-value=8.9e-12 Score=123.94 Aligned_cols=188 Identities=22% Similarity=0.314 Sum_probs=159.7
Q ss_pred CHHHHHHHHhhCCCcccC-------------------------CCCCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHh
Q psy9283 37 TWREAKRQLRKDHRWDSA-------------------------DLLDRDEKEKLFNEHIEELTKKK-----REKFRELLN 86 (242)
Q Consensus 37 sW~ea~~~l~~DpR~~~~-------------------------~~L~~~ere~lF~eyi~~l~~k~-----r~~F~~LL~ 86 (242)
-|.++.+.++..|.|..+ +.|+..+..++|+.|+..+...+ +.+|...|.
T Consensus 141 ~~~~a~~~Me~~p~f~~lfv~le~~~w~~ts~i~k~e~~ripsdll~l~ea~kv~eq~~~~~~n~r~~i~~~~~fke~l~ 220 (1100)
T KOG4271|consen 141 LWSQARKLMECHPLFHVLFVVLELTPWDATSHIDKMENERIPSDLLDLVEAEKVYEQHLEKLRNERKRIEMRRAFKENLE 220 (1100)
T ss_pred HHHHHHHHHHhChhhhhhheeecccCCCCcchhhccCcccCCccccccccHHHHHHHHHHHhhhhhhhHHHHHHHHHhhh
Confidence 566999999998887643 56677899999999999887543 489999999
Q ss_pred hcCCCCCCCCHHHHHHHHhcChhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccHHH
Q psy9283 87 ETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTSTAKAEFRELLQETKLISHKSLGLLHENENYLSE 166 (242)
Q Consensus 87 e~~~i~~~t~W~ev~~~i~~Dprf~~l~~~d~~re~lF~eyi~~l~~kare~F~elL~E~~~i~~~t~~~i~e~~~~w~e 166 (242)
+.+.|+|+-+|.++..+|+++.-|+.++.+.-. .+|..|+..+..+|++.|+++|.|...+++....+..+...+...
T Consensus 221 e~~~itpg~P~eea~~~~~n~d~~qklte~v~t--~vy~r~qk~i~ekak~~~qE~l~e~s~Lf~d~~~~a~~fsdKmet 298 (1100)
T KOG4271|consen 221 ESPFITPGKPWEEARSFIMNEDFYQKLTESVYT--DVYGRHQKQIIEKAKEEFQELLLEYSELFYDLELDAKPFSDKMET 298 (1100)
T ss_pred cCCccCCCCCHHHhhchhhhhhHHHhcccceee--ccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccchhHH
Confidence 999999999999999999999999999877644 999999999999999999999999987777544566677779999
Q ss_pred HHHHHhcChhhhhccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCcccccccccccccCC
Q psy9283 167 IEEILRNDKRFLSLEHIPEERTQIILTYLDELEKRGPPPPPTASEPNRRLGNNYVNTFGA 226 (242)
Q Consensus 167 i~~~L~~D~Ry~~l~~~~~eR~~Lf~dyi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (242)
|..+|.-++||.++..+-++|+.|+..||--..--.+.++|..+.=..++.-+.+|++.-
T Consensus 299 i~d~le~e~rye~~~~~Aperdalil~higfv~~~t~~tc~s~~~c~d~~~t~llss~~~ 358 (1100)
T KOG4271|consen 299 IQDVLEEEARYEAALKQAPERDALILKHIGFVYHPTKETCPSCPACVDAKITPLLSSVLG 358 (1100)
T ss_pred HHHHHHhHHHHHHHHHhCcchhhhhhhcCceeeCCCCCCCCCccchhhhccchhhhhhhc
Confidence 999999999999999998999999999998887666666666556556677777776543
No 6
>PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction []. It often occurs as multiple copies and often accompanies WW domains IPR001202 from INTERPRO. PRP40 from yeast encodes a novel, essential splicing component that associates with the yeast U1 small nuclear ribonucleoprotein particle [].; PDB: 3HFH_B 2KIS_A 2DOD_A 2JUC_A 2LKS_A 1UZC_A 2KZG_A 2L9V_A 2DOF_A 2KFD_A ....
Probab=99.18 E-value=5.2e-11 Score=80.22 Aligned_cols=51 Identities=39% Similarity=0.757 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhhcCCCCCCCCHHHHHHHHhcChhhccCCCChHHHHHHHHHH
Q psy9283 76 KKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDY 127 (242)
Q Consensus 76 k~r~~F~~LL~e~~~i~~~t~W~ev~~~i~~Dprf~~l~~~d~~re~lF~ey 127 (242)
+.+++|++||.++. |++.++|+++.+.|.+||+|.+++.+...|+++|++|
T Consensus 1 ~a~~~F~~lL~e~~-i~~~s~W~~~~~~l~~dpry~~i~~~~~~R~~lF~ey 51 (51)
T PF01846_consen 1 KAREAFKELLKEHK-ITPYSSWEEVKPKLSKDPRYKAIGDSESERESLFEEY 51 (51)
T ss_dssp HHHHHHHHHHHHTT-S-TTSSHHHHHHHHTTSCHHHHSTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCC-CCCCCcHHHHHHHHccCHHHHHhcCCHHHHHHHHHhC
Confidence 46789999999998 9999999999999999999999966667899999998
No 7
>smart00441 FF Contains two conserved F residues. A novel motif that often accompanies WW domains. Often contains two conserved Phe (F) residues.
Probab=99.11 E-value=1.6e-10 Score=78.85 Aligned_cols=53 Identities=36% Similarity=0.679 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhhcCCCCCCCCHHHHHHHHhcChhhccCCCChHHHHHHHHHHHH
Q psy9283 76 KKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLK 129 (242)
Q Consensus 76 k~r~~F~~LL~e~~~i~~~t~W~ev~~~i~~Dprf~~l~~~d~~re~lF~eyi~ 129 (242)
+.+++|..||.+.+.++++++|+++++.|.+||+|.++... ..++.+|++||.
T Consensus 2 ~~~~~F~~LL~e~~~~~~~~~W~~~~~~~~~d~ry~~l~~~-~~r~~lF~~~i~ 54 (55)
T smart00441 2 EAKEAFKELLKEHEVITPDTTWSEARKKLKNDPRYKALLSE-SEREQLFEDHIE 54 (55)
T ss_pred hHHHHHHHHHHhCCCCCCCCcHHHHHHHHhcChHHHHhcCh-HHHHHHHHHHHh
Confidence 46789999999998788999999999999999999998544 579999999986
No 8
>PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction []. It often occurs as multiple copies and often accompanies WW domains IPR001202 from INTERPRO. PRP40 from yeast encodes a novel, essential splicing component that associates with the yeast U1 small nuclear ribonucleoprotein particle [].; PDB: 3HFH_B 2KIS_A 2DOD_A 2JUC_A 2LKS_A 1UZC_A 2KZG_A 2L9V_A 2DOF_A 2KFD_A ....
Probab=99.11 E-value=1.7e-10 Score=77.68 Aligned_cols=51 Identities=31% Similarity=0.503 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhccccccccccccccccccHHHHHHHHhcChhhhhccCCchHHHHHHHHH
Q psy9283 134 TAKAEFRELLQETKLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEHIPEERTQIILTY 194 (242)
Q Consensus 134 kare~F~elL~E~~~i~~~t~~~i~e~~~~w~ei~~~L~~D~Ry~~l~~~~~eR~~Lf~dy 194 (242)
+|+++|++||.++. |++.| +|.++.+.|.+||||.++...+++|+++|++|
T Consensus 1 ~a~~~F~~lL~e~~-i~~~s---------~W~~~~~~l~~dpry~~i~~~~~~R~~lF~ey 51 (51)
T PF01846_consen 1 KAREAFKELLKEHK-ITPYS---------SWEEVKPKLSKDPRYKAIGDSESERESLFEEY 51 (51)
T ss_dssp HHHHHHHHHHHHTT-S-TTS---------SHHHHHHHHTTSCHHHHSTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCC-CCCCC---------cHHHHHHHHccCHHHHHhcCCHHHHHHHHHhC
Confidence 58999999999998 99999 99999999999999999933447899999998
No 9
>smart00441 FF Contains two conserved F residues. A novel motif that often accompanies WW domains. Often contains two conserved Phe (F) residues.
Probab=99.03 E-value=5.6e-10 Score=76.12 Aligned_cols=53 Identities=34% Similarity=0.518 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhhccccccccccccccccccHHHHHHHHhcChhhhhccCCchHHHHHHHHHHH
Q psy9283 134 TAKAEFRELLQETKLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEHIPEERTQIILTYLD 196 (242)
Q Consensus 134 kare~F~elL~E~~~i~~~t~~~i~e~~~~w~ei~~~L~~D~Ry~~l~~~~~eR~~Lf~dyi~ 196 (242)
+++++|.+||.+++.+++.| +|+++.+.|.+||||.++.+ ..+|+.||++||.
T Consensus 2 ~~~~~F~~LL~e~~~~~~~~---------~W~~~~~~~~~d~ry~~l~~-~~~r~~lF~~~i~ 54 (55)
T smart00441 2 EAKEAFKELLKEHEVITPDT---------TWSEARKKLKNDPRYKALLS-ESEREQLFEDHIE 54 (55)
T ss_pred hHHHHHHHHHHhCCCCCCCC---------cHHHHHHHHhcChHHHHhcC-hHHHHHHHHHHHh
Confidence 68999999999999898888 99999999999999998875 4688999999996
No 10
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=98.67 E-value=2.4e-07 Score=86.68 Aligned_cols=111 Identities=19% Similarity=0.266 Sum_probs=95.3
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHHHhcChhhccCCCChHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhh
Q psy9283 77 KREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDK-----------TSTAKAEFRELLQE 145 (242)
Q Consensus 77 ~r~~F~~LL~e~~~i~~~t~W~ev~~~i~~Dprf~~l~~~d~~re~lF~eyi~~l-----------~~kare~F~elL~E 145 (242)
...+|..||.++. |.|.++|..+...+ .||+|--+..+.--|..+|+.|+... .++-+.+|.+||..
T Consensus 148 AEk~F~~~L~e~q-Vdstw~~~r~i~el-~D~r~~~V~~DP~~rK~~f~kY~~n~~~dq~~~e~n~~~k~~~ef~kml~~ 225 (590)
T COG5104 148 AEKEFITMLKENQ-VDSTWPIFRAIEEL-RDPRYWMVDTDPLWRKDLFKKYFENQEKDQREEEENKQRKYINEFCKMLAG 225 (590)
T ss_pred HHHHHHHHHhhcc-CCCcccHHHHHHHh-cCccceeecCChHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHhcC
Confidence 3479999999876 99999999999998 89998877665556889999999873 34677999999999
Q ss_pred ccccccccccccccccccHHHHHHHHhcChhhhhccCCchHHHHHHHHHHHHHH
Q psy9283 146 TKLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEHIPEERTQIILTYLDELE 199 (242)
Q Consensus 146 ~~~i~~~t~~~i~e~~~~w~ei~~~L~~D~Ry~~l~~~~~eR~~Lf~dyi~~L~ 199 (242)
+.-|.+.| .|..+..++++.|-|.++.. ..+..++|.+|++.|-
T Consensus 226 n~~I~~yT---------~w~t~k~~fs~hP~y~s~~n-E~~krQ~F~~ykdkl~ 269 (590)
T COG5104 226 NSHIKYYT---------DWFTFKSIFSKHPYYSSVVN-EKTKRQTFQKYKDKLG 269 (590)
T ss_pred CCccceee---------hhhhHHhhhccCcchhhhcc-hHHHHHHHHHHHHHhh
Confidence 98899999 99999999999999997763 4556999999999884
No 11
>KOG0152|consensus
Probab=98.55 E-value=2e-07 Score=89.18 Aligned_cols=137 Identities=22% Similarity=0.372 Sum_probs=110.4
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHHHhcChhhccCCCChHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhh
Q psy9283 77 KREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKT-----------STAKAEFRELLQE 145 (242)
Q Consensus 77 ~r~~F~~LL~e~~~i~~~t~W~ev~~~i~~Dprf~~l~~~d~~re~lF~eyi~~l~-----------~kare~F~elL~E 145 (242)
...+|+.||.... +.+.++|+.+.+.+.+||+|.++.... .+.+.|+.|...+. ++++++|..+|.+
T Consensus 28 a~~~f~~~lrd~~-v~s~~n~~q~~~~~~~d~~~~~~~~~~-~~kqafn~~~~qr~~d~~~~~~~~~kk~k~d~~~~l~e 105 (463)
T KOG0152|consen 28 AKRAFKELLRDAN-VPSNWNWDQAVRLISNDKRYNALRDSS-ERKQAFNGYTLQRGRDRVLEESLDVKKAKEDFLQMLQE 105 (463)
T ss_pred hHHHHHHHHhhcC-CCCCCCHHHHHHhccCCCccccccCch-hhHHhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhHhh
Confidence 4589999999876 999999999999999999999996554 68899999988722 3799999999999
Q ss_pred ccccccccccccccccccHHHHHHHHhcChhhhhccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCcccccccccccccC
Q psy9283 146 TKLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEHIPEERTQIILTYLDELEKRGPPPPPTASEPNRRLGNNYVNTFG 225 (242)
Q Consensus 146 ~~~i~~~t~~~i~e~~~~w~ei~~~L~~D~Ry~~l~~~~~eR~~Lf~dyi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (242)
...+...+ .|+.....+..||+|.++.. .++..+|.+||.+|.+++.+-.---...+-..-++.+|.++
T Consensus 106 ~~~~~~~~---------~~~~~~~~fa~~p~~~~~~~--~~~r~~~~nci~el~~~ek~k~~~~r~r~~~~~~~~~~~~~ 174 (463)
T KOG0152|consen 106 ESKYKSST---------EWKTAKELFAGDPRWSEHIS--EDGRKIYENCITELSQREKEKKLEDRKRNLAADKHLLNSES 174 (463)
T ss_pred cccccccc---------cccccccccccccchhhccc--hhhHHHHHHHHHHHHHhhhHHHHHHHHhhhHhhhcchhccc
Confidence 98888888 89999999999999998875 37999999999999987665443322233334455555544
Q ss_pred C
Q psy9283 226 A 226 (242)
Q Consensus 226 ~ 226 (242)
-
T Consensus 175 ~ 175 (463)
T KOG0152|consen 175 S 175 (463)
T ss_pred c
Confidence 3
No 12
>KOG4271|consensus
Probab=96.91 E-value=0.0075 Score=61.58 Aligned_cols=150 Identities=19% Similarity=0.347 Sum_probs=109.0
Q ss_pred HHHHHHHHhc-CCCCCCCHHHHHHHHhhCCCcccCCC-CCHHHHHHHHHHHHHHHHHH-----HH-------HHHHHHHh
Q psy9283 21 REKEVQRTLA-VRNSELTWREAKRQLRKDHRWDSADL-LDRDEKEKLFNEHIEELTKK-----KR-------EKFRELLN 86 (242)
Q Consensus 21 Re~e~~~~~~-~~~~~~sW~ea~~~l~~DpR~~~~~~-L~~~ere~lF~eyi~~l~~k-----~r-------~~F~~LL~ 86 (242)
-+.++.-.++ ++.-.+.|-.+...|...|.|..+-. -...-...+|..||.+++.. +| .+|..||.
T Consensus 54 ~k~~f~~lvs~~v~~~~~w~~v~~~~~~hpd~~~~v~l~gtr~a~~~~~~~i~~~k~~~~~~r~~~~~~~l~~~f~~~l~ 133 (1100)
T KOG4271|consen 54 AKDKFETLVSQAVPLHTYWNQVSAKIDRHPDYMNYVTLEGTRKAFEMFERHISELKEEHIINRRRTYVPRLPEAFQVLLP 133 (1100)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhcCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444554444 66667789999999999999986532 24566788999999998753 22 78998887
Q ss_pred hcCCCCCCCCHHHHHHHHhcChhhccCCC----------------------C----hHHHHHHHHHHHHHHHH-----HH
Q psy9283 87 ETSEVTLSSSWKDIRKLIKEDPRYTKFSS----------------------S----DRRCEREFKDYLKDKTS-----TA 135 (242)
Q Consensus 87 e~~~i~~~t~W~ev~~~i~~Dprf~~l~~----------------------~----d~~re~lF~eyi~~l~~-----ka 135 (242)
....| ..-|.+++++++..|.|..+-. + .-+-+++|+.|+..+.. ..
T Consensus 134 ~ld~~--e~~~~~a~~~Me~~p~f~~lfv~le~~~w~~ts~i~k~e~~ripsdll~l~ea~kv~eq~~~~~~n~r~~i~~ 211 (1100)
T KOG4271|consen 134 NLDEI--EHLWSQARKLMECHPLFHVLFVVLELTPWDATSHIDKMENERIPSDLLDLVEAEKVYEQHLEKLRNERKRIEM 211 (1100)
T ss_pred cHHHH--HHHHHHHHHHHHhChhhhhhheeecccCCCCcchhhccCcccCCccccccccHHHHHHHHHHHhhhhhhhHHH
Confidence 55544 4556699998888876533200 0 11247899998887543 57
Q ss_pred HHHHHHHHhhccccccccccccccccccHHHHHHHHhcChhhhhcc
Q psy9283 136 KAEFRELLQETKLISHKSLGLLHENENYLSEIEEILRNDKRFLSLE 181 (242)
Q Consensus 136 re~F~elL~E~~~i~~~t~~~i~e~~~~w~ei~~~L~~D~Ry~~l~ 181 (242)
+.+|.+.|.+..+|+..- .|.++...+.++.-|+-+.
T Consensus 212 ~~~fke~l~e~~~itpg~---------P~eea~~~~~n~d~~qklt 248 (1100)
T KOG4271|consen 212 RRAFKENLEESPFITPGK---------PWEEARSFIMNEDFYQKLT 248 (1100)
T ss_pred HHHHHHhhhcCCccCCCC---------CHHHhhchhhhhhHHHhcc
Confidence 899999999999998876 7999988888888876553
No 13
>KOG4031|consensus
Probab=42.76 E-value=1.1e+02 Score=26.71 Aligned_cols=38 Identities=21% Similarity=0.444 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHHHhcChhhccCC
Q psy9283 77 KREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFS 114 (242)
Q Consensus 77 ~r~~F~~LL~e~~~i~~~t~W~ev~~~i~~Dprf~~l~ 114 (242)
.+.+=..++.+..+.+++|+|..|.+++.-+|--..-+
T Consensus 159 nk~eee~~~~e~~~~~~gTeWErv~kL~D~n~k~sk~g 196 (216)
T KOG4031|consen 159 NKAEEEALVKENEEFSPGTEWERVAKLCDFNPKSSKQG 196 (216)
T ss_pred hHHHHHHHHHhhcccCCCchHHHHHHHHcCCccchhcc
Confidence 34444555666777899999999999999888655443
No 14
>PHA03298 envelope glycoprotein L; Provisional
Probab=35.83 E-value=13 Score=30.09 Aligned_cols=20 Identities=35% Similarity=0.471 Sum_probs=16.7
Q ss_pred ccccCCCCCCCCCCCCCCccC
Q psy9283 221 VNTFGAYPKPGIGGSGDMFED 241 (242)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~ 241 (242)
.|+.+-|- |+|--|||||||
T Consensus 63 daa~~ifg-pey~pgg~mfe~ 82 (167)
T PHA03298 63 DAAARIFG-PEYLPGGDMFED 82 (167)
T ss_pred ccceeeeC-CccCCCccHHHh
Confidence 36667777 999999999997
No 15
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=23.82 E-value=3.2e+02 Score=20.54 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy9283 120 CEREFKDYLKDKTSTAKAEFRELLQETKLI 149 (242)
Q Consensus 120 re~lF~eyi~~l~~kare~F~elL~E~~~i 149 (242)
.+.++...+..+...++.+|..++.|....
T Consensus 4 L~~~~~Q~~~~l~~~~~~Ef~~I~~Er~v~ 33 (109)
T PF03980_consen 4 LESVHQQMIEFLEENCKKEFEEILEERDVV 33 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 468899999999999999999999998643
No 16
>PF14473 RD3: RD3 protein
Probab=20.16 E-value=2.9e+02 Score=22.30 Aligned_cols=66 Identities=26% Similarity=0.361 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhhCC-CcccCCCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHhh
Q psy9283 13 RQEASLREREKEVQRTLAVRNSELTWREAKRQLRKDH-RWDSADLLDRDEKEKLFNEHIEELTKK----KREKFRELLNE 87 (242)
Q Consensus 13 ~~e~~~reRe~e~~~~~~~~~~~~sW~ea~~~l~~Dp-R~~~~~~L~~~ere~lF~eyi~~l~~k----~r~~F~~LL~e 87 (242)
+.|...++|+.++++...+++. +| |.+.| |-.. .|+.+|+.+| ++-|..+.-- --.-|+++|.+
T Consensus 37 e~Er~~~Ere~E~r~~~tgvDY--sW------L~s~~~r~~~--~i~~~ErlqL-E~lCski~P~~~g~vI~RFRellae 105 (133)
T PF14473_consen 37 ERERQQRERENEERKRKTGVDY--SW------LASYPTRPSY--QISPGERLQL-EDLCSKIPPCECGPVISRFRELLAE 105 (133)
T ss_pred HHHHHHHHHHHHHHHHhhCCCc--ch------hcCCCCCccC--CCCHHHHHHH-HHHHhcCChhhhHHHHHHHHHHHHc
Confidence 3456678888888888666666 55 67777 4332 3588999886 2333333211 12567777765
Q ss_pred cC
Q psy9283 88 TS 89 (242)
Q Consensus 88 ~~ 89 (242)
..
T Consensus 106 ~e 107 (133)
T PF14473_consen 106 NE 107 (133)
T ss_pred cC
Confidence 44
Done!