Query psy9283
Match_columns 242
No_of_seqs 119 out of 505
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 23:31:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9283.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9283hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hfh_A Transcription elongatio 100.0 6.1E-31 2.1E-35 222.4 11.4 161 20-196 6-190 (190)
2 3hfh_A Transcription elongatio 99.8 1.1E-19 3.7E-24 153.3 9.2 118 8-129 45-190 (190)
3 2dof_A Transcription elongatio 99.3 7.4E-13 2.5E-17 96.7 2.2 61 22-82 20-82 (85)
4 2doe_A Transcription elongatio 99.2 3.2E-11 1.1E-15 88.7 8.0 66 132-208 16-81 (83)
5 2doe_A Transcription elongatio 99.2 4.6E-11 1.6E-15 87.8 7.3 57 75-133 17-73 (83)
6 2cqn_A Formin-binding protein 99.2 1.1E-10 3.9E-15 84.5 8.4 60 75-135 9-69 (77)
7 1uzc_A Hypothetical protein FL 99.1 5.3E-11 1.8E-15 85.0 6.1 54 18-73 14-69 (71)
8 1uzc_A Hypothetical protein FL 99.1 2.5E-10 8.6E-15 81.4 7.8 55 75-131 15-69 (71)
9 2dod_A Transcription elongatio 99.1 1.4E-10 4.8E-15 85.0 6.3 59 17-78 15-75 (82)
10 2b7e_A PRE-mRNA processing pro 99.0 2.5E-10 8.5E-15 78.2 5.2 52 20-72 4-58 (59)
11 2cqn_A Formin-binding protein 99.0 6.2E-10 2.1E-14 80.6 6.7 62 131-202 7-69 (77)
12 2dod_A Transcription elongatio 99.0 1.4E-09 4.7E-14 79.7 8.1 56 76-134 18-73 (82)
13 2juc_A PRE-mRNA-splicing facto 98.8 3.6E-09 1.2E-13 72.4 4.9 51 77-129 8-58 (59)
14 2dof_A Transcription elongatio 98.8 1.2E-08 3.9E-13 74.5 7.3 64 132-205 16-80 (85)
15 2b7e_A PRE-mRNA processing pro 98.8 1.1E-08 3.8E-13 70.0 5.9 54 76-130 4-58 (59)
16 2juc_A PRE-mRNA-splicing facto 98.4 3.6E-07 1.2E-11 62.5 5.8 46 24-71 11-58 (59)
17 2kfd_A PRE-mRNA-processing pro 95.5 0.068 2.3E-06 37.0 7.4 57 72-128 8-67 (69)
18 2kfd_A PRE-mRNA-processing pro 91.7 0.79 2.7E-05 31.6 7.0 34 36-70 34-67 (69)
19 2k85_A Glucocorticoid receptor 91.1 0.4 1.4E-05 33.3 5.1 58 133-200 9-68 (69)
20 2k85_A Glucocorticoid receptor 89.8 0.34 1.2E-05 33.6 3.7 45 31-75 23-68 (69)
21 3bsu_A Ribonuclease H1, RNAse 36.8 30 0.001 22.3 3.0 31 35-67 17-49 (53)
22 2jxc_B Stonin-2, stoned B; end 26.1 36 0.0012 21.0 1.9 17 212-228 24-40 (45)
23 1qhk_A RNAse HI, protein (ribo 23.5 43 0.0015 21.0 1.9 28 36-65 16-45 (47)
No 1
>3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A
Probab=99.97 E-value=6.1e-31 Score=222.39 Aligned_cols=161 Identities=16% Similarity=0.324 Sum_probs=122.5
Q ss_pred HHHHHHHHHhc--CCCCCCCHHHHHHHHhhCCCcccCCCCCHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHh
Q psy9283 20 EREKEVQRTLA--VRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTKK-----------KREKFRELLN 86 (242)
Q Consensus 20 eRe~e~~~~~~--~~~~~~sW~ea~~~l~~DpR~~~~~~L~~~ere~lF~eyi~~l~~k-----------~r~~F~~LL~ 86 (242)
++.+.+..+|. +|+|+|+|+.+++.|++||||.+| +.++|+++|++||..+.+. .+++|.+||.
T Consensus 6 e~~~~F~~lL~~~~V~~~~~We~~~~~i~~Dpry~al---~~~eRk~~f~~y~~~r~~ee~~ek~~~~~~ar~~F~~lL~ 82 (190)
T 3hfh_A 6 ARMXQFXDMLLERGVSAFSTWEXELHXIVFDPRYLLL---NPXERXQVFDQYVXTRAEEERREXXNXIMQAXEDFXXMME 82 (190)
T ss_dssp HHHHHHHHHHHHTTCCSSSCHHHHGGGTTTSGGGGGS---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHcCcCCCCchhhhhhhhccCcchhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777776 999999999999999999999987 5699999999999986533 3589999999
Q ss_pred hcCCCCCCCCHHHHHHHHhcChhhccCCCChHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhhcccccccccc
Q psy9283 87 ETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTS-----------TAKAEFRELLQETKLISHKSLG 155 (242)
Q Consensus 87 e~~~i~~~t~W~ev~~~i~~Dprf~~l~~~d~~re~lF~eyi~~l~~-----------kare~F~elL~E~~~i~~~t~~ 155 (242)
+++ |+|.++|.++...|.+||+|.+++. +.+|+.+|++|+..+.. +++++|.+||.+. .|++.|
T Consensus 83 e~~-i~~~~~w~~~~~~~~~Dpr~~~~~~-~~eR~~lF~eyi~~lkk~e~e~~~~~r~~~~~~f~~lL~~~-~l~~~t-- 157 (190)
T 3hfh_A 83 EAX-FNPRATFSEFAAXHAXDSRFXAIEX-MXDREALFNEFVAAARXXEXEDSXTRGEXIXSDFFELLSNH-HLDSQS-- 157 (190)
T ss_dssp -------------------TCCTTTTSCT-TTTTTTTHHHHHHHHSTTTTTHHHHTHHHHHHHHHHHHHTS-CCCTTC--
T ss_pred HcC-CCCCCCHHHHHHHhCCCchhhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhC-CCCCCC--
Confidence 876 9999999999999999999999974 45789999999999753 6889999999999 699999
Q ss_pred ccccccccHHHHHHHHhcChhhhhccCCchHHHHHHHHHHH
Q psy9283 156 LLHENENYLSEIEEILRNDKRFLSLEHIPEERTQIILTYLD 196 (242)
Q Consensus 156 ~i~e~~~~w~ei~~~L~~D~Ry~~l~~~~~eR~~Lf~dyi~ 196 (242)
+|.+++..|.+||||.+|... .+|+.+|++||+
T Consensus 158 -------~W~~~~~~l~~D~ry~~v~~~-~~R~~~F~eyi~ 190 (190)
T 3hfh_A 158 -------RWSXVXDXVESDPRYXAVDSS-SMREDLFXQYIE 190 (190)
T ss_dssp -------CHHHHHHHHSSSHHHHTSCCH-HHHHHHHHHHHC
T ss_pred -------CHHHHHHHHhhChHhhcCCCH-HHHHHHHHHHhC
Confidence 999999999999999998752 379999999983
No 2
>3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A
Probab=99.80 E-value=1.1e-19 Score=153.30 Aligned_cols=118 Identities=24% Similarity=0.410 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---------------hc--CCCCCCCHHHHHHHHhhCCCcccCCCCCHHHHHHHHHHHH
Q psy9283 8 ADKKARQEASLREREKEVQRT---------------LA--VRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHI 70 (242)
Q Consensus 8 ~~k~~~~e~~~reRe~e~~~~---------------~~--~~~~~~sW~ea~~~l~~DpR~~~~~~L~~~ere~lF~eyi 70 (242)
.+||+.++..+..|.++.+.+ |. +++|.++|+++++.+++||||.+++. ..+|+++|++||
T Consensus 45 ~eRk~~f~~y~~~r~~ee~~ek~~~~~~ar~~F~~lL~e~~i~~~~~w~~~~~~~~~Dpr~~~~~~--~~eR~~lF~eyi 122 (190)
T 3hfh_A 45 XERXQVFDQYVXTRAEEERREXXNXIMQAXEDFXXMMEEAXFNPRATFSEFAAXHAXDSRFXAIEX--MXDREALFNEFV 122 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---------------------TCCTTTTSCT--TTTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHhCCCchhhcCcc--chHHHHHHHHHH
Confidence 566777766666655444322 22 79999999999999999999999984 499999999999
Q ss_pred HHHHH-----------HHHHHHHHHHhhcCCCCCCCCHHHHHHHHhcChhhccCCCChHHHHHHHHHHHH
Q psy9283 71 EELTK-----------KKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLK 129 (242)
Q Consensus 71 ~~l~~-----------k~r~~F~~LL~e~~~i~~~t~W~ev~~~i~~Dprf~~l~~~d~~re~lF~eyi~ 129 (242)
..|++ +.+.+|.+||.+. .|++.|+|.+++..|.+||+|++|++++ .|+.+|++||.
T Consensus 123 ~~lkk~e~e~~~~~r~~~~~~f~~lL~~~-~l~~~t~W~~~~~~l~~D~ry~~v~~~~-~R~~~F~eyi~ 190 (190)
T 3hfh_A 123 AAARXXEXEDSXTRGEXIXSDFFELLSNH-HLDSQSRWSXVXDXVESDPRYXAVDSSS-MREDLFXQYIE 190 (190)
T ss_dssp HHHSTTTTTHHHHTHHHHHHHHHHHHHTS-CCCTTCCHHHHHHHHSSSHHHHTSCCHH-HHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhC-CCCCCCCHHHHHHHHhhChHhhcCCCHH-HHHHHHHHHhC
Confidence 99864 3458999999998 5999999999999999999999997653 68899999983
No 3
>2dof_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=99.28 E-value=7.4e-13 Score=96.69 Aligned_cols=61 Identities=57% Similarity=0.961 Sum_probs=55.5
Q ss_pred HHHHHHHhc--CCCCCCCHHHHHHHHhhCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9283 22 EKEVQRTLA--VRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTKKKREKFR 82 (242)
Q Consensus 22 e~e~~~~~~--~~~~~~sW~ea~~~l~~DpR~~~~~~L~~~ere~lF~eyi~~l~~k~r~~F~ 82 (242)
+..|+..|. |.+|+.||.++.+.|.+||||..++.|+..+++.||++||..|.++.+.+|+
T Consensus 20 ~~~F~aLL~DlIr~pd~sW~Eakr~LrKD~R~~~~~~Ld~~ekE~LF~eHi~~L~~K~r~~f~ 82 (85)
T 2dof_A 20 IQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLFNEHIEALTKKKRESGP 82 (85)
T ss_dssp HHHHHHHHHHHTCCSSCCHHHHHHHHHHSSTHHHHTTSCHHHHHHHHHHHHHHHHHHCSSCCC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHhccCcccccCCcCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455666676 9999999999999999999999888999999999999999999999887775
No 4
>2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=99.22 E-value=3.2e-11 Score=88.66 Aligned_cols=66 Identities=20% Similarity=0.430 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhhccccccccccccccccccHHHHHHHHhcChhhhhccCCchHHHHHHHHHHHHHHhcCCCCCCC
Q psy9283 132 TSTAKAEFRELLQETKLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEHIPEERTQIILTYLDELEKRGPPPPPT 208 (242)
Q Consensus 132 ~~kare~F~elL~E~~~i~~~t~~~i~e~~~~w~ei~~~L~~D~Ry~~l~~~~~eR~~Lf~dyi~~L~~~~~~~~~~ 208 (242)
..+++++|..||.+.+ |+..| +|..+.++|.+||||.++.. +.+|++||++||.+|.+++....|.
T Consensus 16 ~~k~~~~F~~mL~e~~-I~~~s---------~W~~~~~~i~~Dpry~av~~-~~eRe~lF~eYi~~l~~~e~~e~~~ 81 (83)
T 2doe_A 16 GEKIKSDFFELLSNHH-LDSQS---------RWSKVKDKVESDPRYKAVDS-SSMREDLFKQYIEKIAKNLDSSGPS 81 (83)
T ss_dssp HHHHHHHHHHHHHHTT-CCTTC---------CHHHHHHHHTTSTHHHHCCC-HHHHHHHHHHHHHHHHSCCCCCSTT
T ss_pred HHHHHHHHHHHHhhCC-CCCCC---------cHHHHHHHHccCHHHHhcCC-HHHHHHHHHHHHHHHHHHHhcccCC
Confidence 4589999999999999 99999 99999999999999998864 4789999999999999887776665
No 5
>2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=99.18 E-value=4.6e-11 Score=87.83 Aligned_cols=57 Identities=28% Similarity=0.550 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCHHHHHHHHhcChhhccCCCChHHHHHHHHHHHHHHHH
Q psy9283 75 KKKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTS 133 (242)
Q Consensus 75 ~k~r~~F~~LL~e~~~i~~~t~W~ev~~~i~~Dprf~~l~~~d~~re~lF~eyi~~l~~ 133 (242)
.+.+++|..||.+++ |+++++|++|++.|.+||+|.+++. +.+|+++|++||..+..
T Consensus 17 ~k~~~~F~~mL~e~~-I~~~s~W~~~~~~i~~Dpry~av~~-~~eRe~lF~eYi~~l~~ 73 (83)
T 2doe_A 17 EKIKSDFFELLSNHH-LDSQSRWSKVKDKVESDPRYKAVDS-SSMREDLFKQYIEKIAK 73 (83)
T ss_dssp HHHHHHHHHHHHHTT-CCTTCCHHHHHHHHTTSTHHHHCCC-HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhCC-CCCCCcHHHHHHHHccCHHHHhcCC-HHHHHHHHHHHHHHHHH
Confidence 456799999999999 9999999999999999999999954 45899999999998763
No 6
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=99.16 E-value=1.1e-10 Score=84.54 Aligned_cols=60 Identities=23% Similarity=0.572 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhhc-CCCCCCCCHHHHHHHHhcChhhccCCCChHHHHHHHHHHHHHHHHHH
Q psy9283 75 KKKREKFRELLNET-SEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTSTA 135 (242)
Q Consensus 75 ~k~r~~F~~LL~e~-~~i~~~t~W~ev~~~i~~Dprf~~l~~~d~~re~lF~eyi~~l~~ka 135 (242)
.+.+++|..||.+. +.|+++++|++|++.|.++|+|++++ ++.+|+.+|++||..+..++
T Consensus 9 rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~~~fkav~-~E~eR~~lFeeYi~~Lkekc 69 (77)
T 2cqn_A 9 KRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEPAFEDIT-LESERKRIFKDFMHVLEHEC 69 (77)
T ss_dssp HHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTSHHHHTCC-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHccCHHHHhcC-CHHHHHHHHHHHHHHHHHHH
Confidence 45679999999998 57999999999999999999999995 55589999999999998765
No 7
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=99.15 E-value=5.3e-11 Score=84.98 Aligned_cols=54 Identities=20% Similarity=0.320 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhc--CCCCCCCHHHHHHHHhhCCCcccCCCCCHHHHHHHHHHHHHHH
Q psy9283 18 LREREKEVQRTLA--VRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEEL 73 (242)
Q Consensus 18 ~reRe~e~~~~~~--~~~~~~sW~ea~~~l~~DpR~~~~~~L~~~ere~lF~eyi~~l 73 (242)
..+.++.+..+|. .|+|.++|+++++.|++||||.+|+ +.++|+++|++|+.+.
T Consensus 14 ~eea~~~F~~LL~e~~V~~~~tWe~~~~~i~~DpRY~al~--~~~eRk~~F~ey~~~r 69 (71)
T 1uzc_A 14 KEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALA--KLSEKKQAFNAYKVQT 69 (71)
T ss_dssp HHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHTSGGGGGCS--SHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCccccccC--CHHHHHHHHHHHHHHh
Confidence 3455666777777 9999999999999999999999998 6799999999999864
No 8
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=99.10 E-value=2.5e-10 Score=81.45 Aligned_cols=55 Identities=29% Similarity=0.591 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCHHHHHHHHhcChhhccCCCChHHHHHHHHHHHHHH
Q psy9283 75 KKKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDK 131 (242)
Q Consensus 75 ~k~r~~F~~LL~e~~~i~~~t~W~ev~~~i~~Dprf~~l~~~d~~re~lF~eyi~~l 131 (242)
+..+++|++||.+.+ |+|.++|+.+.+.|.+||||.+|. +..+|+++|++|+..+
T Consensus 15 eea~~~F~~LL~e~~-V~~~~tWe~~~~~i~~DpRY~al~-~~~eRk~~F~ey~~~r 69 (71)
T 1uzc_A 15 EEAKQAFKELLKEKR-VPSNASWEQAMKMIINDPRYSALA-KLSEKKQAFNAYKVQT 69 (71)
T ss_dssp HHHHHHHHHHHHHTT-CCTTCCHHHHHHHHHTSGGGGGCS-SHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcC-cCCCCCHHHHHHHHccCccccccC-CHHHHHHHHHHHHHHh
Confidence 456789999999988 999999999999999999999996 4458999999999864
No 9
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=99.09 E-value=1.4e-10 Score=84.99 Aligned_cols=59 Identities=19% Similarity=0.339 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhc--CCCCCCCHHHHHHHHhhCCCcccCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy9283 17 SLREREKEVQRTLA--VRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTKKKR 78 (242)
Q Consensus 17 ~~reRe~e~~~~~~--~~~~~~sW~ea~~~l~~DpR~~~~~~L~~~ere~lF~eyi~~l~~k~r 78 (242)
...++++.+..+|. +|+|+|||+.+++.|++||||.+|+ ..+|+++|++|+.+..+.++
T Consensus 15 t~eea~~~Fk~LL~e~~V~p~~tWe~~~~~i~~DpRY~aL~---~~eRK~~F~~y~~~r~~eer 75 (82)
T 2dod_A 15 PLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLN---PKERKQVFDQYVKTRAEEER 75 (82)
T ss_dssp CHHHHHHHHHHHHHHTTCCSSSCHHHHHHHHHTCSGGGTSC---HHHHHHHHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCCccccCC---HHHHHHHHHHHHHHHHHHHH
Confidence 45677778888887 9999999999999999999999985 59999999999998876543
No 10
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=99.04 E-value=2.5e-10 Score=78.23 Aligned_cols=52 Identities=25% Similarity=0.298 Sum_probs=44.2
Q ss_pred HHHHHHHHHhc--CCCCCCCHHHHHHHH-hhCCCcccCCCCCHHHHHHHHHHHHHH
Q psy9283 20 EREKEVQRTLA--VRNSELTWREAKRQL-RKDHRWDSADLLDRDEKEKLFNEHIEE 72 (242)
Q Consensus 20 eRe~e~~~~~~--~~~~~~sW~ea~~~l-~~DpR~~~~~~L~~~ere~lF~eyi~~ 72 (242)
|.++.+..+|. .|+|+|||+++++.| ++||||.+|+. ++.+|+++|++|+.+
T Consensus 4 Eae~aF~~lL~~~~V~s~wsweqamr~i~i~DPrY~al~d-~~~eRK~~Fe~Y~~~ 58 (59)
T 2b7e_A 4 EAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDD-DPLWKKEMFEKYLSN 58 (59)
T ss_dssp HHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHSCC-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCccccccC-CHHHHHHHHHHHHhc
Confidence 34556666776 999999999999999 89999999982 279999999999864
No 11
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=99.01 E-value=6.2e-10 Score=80.64 Aligned_cols=62 Identities=18% Similarity=0.358 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHhhc-cccccccccccccccccHHHHHHHHhcChhhhhccCCchHHHHHHHHHHHHHHhcC
Q psy9283 131 KTSTAKAEFRELLQET-KLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEHIPEERTQIILTYLDELEKRG 202 (242)
Q Consensus 131 l~~kare~F~elL~E~-~~i~~~t~~~i~e~~~~w~ei~~~L~~D~Ry~~l~~~~~eR~~Lf~dyi~~L~~~~ 202 (242)
++++++++|..||++. +.|+..| +|.+|+++|.+||+|+++. .+.+|..||.+||..|+.+.
T Consensus 7 r~rrl~~~F~~mLk~~~p~I~~~s---------~We~vr~~~e~~~~fkav~-~E~eR~~lFeeYi~~Lkekc 69 (77)
T 2cqn_A 7 GMKRKESAFKSMLKQAAPPIELDA---------VWEDIRERFVKEPAFEDIT-LESERKRIFKDFMHVLEHEC 69 (77)
T ss_dssp SHHHHHHHHHHHHHTCSSCCCTTC---------CHHHHHHHHTTSHHHHTCC-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCC---------CHHHHHHHHccCHHHHhcC-CHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999 5899999 9999999999999999997 46789999999999998764
No 12
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=98.99 E-value=1.4e-09 Score=79.68 Aligned_cols=56 Identities=25% Similarity=0.511 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhhcCCCCCCCCHHHHHHHHhcChhhccCCCChHHHHHHHHHHHHHHHHH
Q psy9283 76 KKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTST 134 (242)
Q Consensus 76 k~r~~F~~LL~e~~~i~~~t~W~ev~~~i~~Dprf~~l~~~d~~re~lF~eyi~~l~~k 134 (242)
....+|+.||.+.+ |+|+++|+.+.+.|.+||||.+|+ ..+|+++|++|+..+...
T Consensus 18 ea~~~Fk~LL~e~~-V~p~~tWe~~~~~i~~DpRY~aL~--~~eRK~~F~~y~~~r~~e 73 (82)
T 2dod_A 18 ARMKQFKDMLLERG-VSAFSTWEKELHKIVFDPRYLLLN--PKERKQVFDQYVKTRAEE 73 (82)
T ss_dssp HHHHHHHHHHHHTT-CCSSSCHHHHHHHHHTCSGGGTSC--HHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHcC-cCCCCCHHHHHHHHccCCccccCC--HHHHHHHHHHHHHHHHHH
Confidence 35688999999988 999999999999999999999996 458999999999987653
No 13
>2juc_A PRE-mRNA-splicing factor URN1; FF, helical bundle, solution, mRNA processing, nucleus, spliceosome, unknown function; NMR {Saccharomyces cerevisiae}
Probab=98.83 E-value=3.6e-09 Score=72.40 Aligned_cols=51 Identities=27% Similarity=0.445 Sum_probs=46.0
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHHHhcChhhccCCCChHHHHHHHHHHHH
Q psy9283 77 KREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLK 129 (242)
Q Consensus 77 ~r~~F~~LL~e~~~i~~~t~W~ev~~~i~~Dprf~~l~~~d~~re~lF~eyi~ 129 (242)
.+..|.+||.+.. |.|.++|.-....|.+||||.+|+ +...|+.+|++|++
T Consensus 8 ~k~~F~~LL~e~~-InPys~W~~e~~ki~~DpRY~~l~-s~~~R~e~F~ew~r 58 (59)
T 2juc_A 8 ERNIFFELFDRYK-LDKFSTWSLQSKKIENDPDFYKIR-DDTVRESLFEEWCG 58 (59)
T ss_dssp SHHHHHHHHHHTT-CCTTTCSHHHHHHHSSSTTGGGSS-CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC-CCCCCchhhhcccccCCCCeeecC-ChHHHHHHHHHHhh
Confidence 3578999999988 999999999999999999999996 44589999999985
No 14
>2dof_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=98.81 E-value=1.2e-08 Score=74.53 Aligned_cols=64 Identities=22% Similarity=0.358 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHhhccccccccccccccccccHHHHHHHHhcChhhhhccCCc-hHHHHHHHHHHHHHHhcCCCC
Q psy9283 132 TSTAKAEFRELLQETKLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEHIP-EERTQIILTYLDELEKRGPPP 205 (242)
Q Consensus 132 ~~kare~F~elL~E~~~i~~~t~~~i~e~~~~w~ei~~~L~~D~Ry~~l~~~~-~eR~~Lf~dyi~~L~~~~~~~ 205 (242)
...|...|+.||-+. |+.++.+|.+.+++|++||||..++.++ ++++.||.+||+.|.++....
T Consensus 16 r~EA~~~F~aLL~Dl----------Ir~pd~sW~Eakr~LrKD~R~~~~~~Ld~~ekE~LF~eHi~~L~~K~r~~ 80 (85)
T 2dof_A 16 REEAIQNFKALLSDM----------VRSSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLFNEHIEALTKKKRES 80 (85)
T ss_dssp HHHHHHHHHHHHHHH----------TCCSSCCHHHHHHHHHHSSTHHHHTTSCHHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHHH----------hcCCCCCHHHHHHHhccCcccccCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999854 3445569999999999999999887787 778999999999999876543
No 15
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=98.77 E-value=1.1e-08 Score=70.03 Aligned_cols=54 Identities=24% Similarity=0.396 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhhcCCCCCCCCHHHHHHHH-hcChhhccCCCChHHHHHHHHHHHHH
Q psy9283 76 KKREKFRELLNETSEVTLSSSWKDIRKLI-KEDPRYTKFSSSDRRCEREFKDYLKD 130 (242)
Q Consensus 76 k~r~~F~~LL~e~~~i~~~t~W~ev~~~i-~~Dprf~~l~~~d~~re~lF~eyi~~ 130 (242)
...++|++||.+++ |.|+++|..+.+.| .+||+|-+|..+..+|+++|+.|+..
T Consensus 4 Eae~aF~~lL~~~~-V~s~wsweqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y~~~ 58 (59)
T 2b7e_A 4 EAEKEFITMLKENQ-VDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYLSN 58 (59)
T ss_dssp HHHHHHHHHHHHTT-CCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC-CCCCCcHHHHHHHhccCCCccccccCCHHHHHHHHHHHHhc
Confidence 34589999999887 99999999999999 89999999964456899999999864
No 16
>2juc_A PRE-mRNA-splicing factor URN1; FF, helical bundle, solution, mRNA processing, nucleus, spliceosome, unknown function; NMR {Saccharomyces cerevisiae}
Probab=98.44 E-value=3.6e-07 Score=62.49 Aligned_cols=46 Identities=17% Similarity=0.253 Sum_probs=40.8
Q ss_pred HHHHHhc--CCCCCCCHHHHHHHHhhCCCcccCCCCCHHHHHHHHHHHHH
Q psy9283 24 EVQRTLA--VRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIE 71 (242)
Q Consensus 24 e~~~~~~--~~~~~~sW~ea~~~l~~DpR~~~~~~L~~~ere~lF~eyi~ 71 (242)
.+...|. .|+|.++|+-...+|.+||||.+|+ +.+.|+.+|++||.
T Consensus 11 ~F~~LL~e~~InPys~W~~e~~ki~~DpRY~~l~--s~~~R~e~F~ew~r 58 (59)
T 2juc_A 11 IFFELFDRYKLDKFSTWSLQSKKIENDPDFYKIR--DDTVRESLFEEWCG 58 (59)
T ss_dssp HHHHHHHHTTCCTTTCSHHHHHHHSSSTTGGGSS--CHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCCchhhhcccccCCCCeeecC--ChHHHHHHHHHHhh
Confidence 3445555 8999999999999999999999999 77999999999985
No 17
>2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae}
Probab=95.51 E-value=0.068 Score=36.97 Aligned_cols=57 Identities=23% Similarity=0.361 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHhhcCCC--C-CCCCHHHHHHHHhcChhhccCCCChHHHHHHHHHHH
Q psy9283 72 ELTKKKREKFRELLNETSEV--T-LSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYL 128 (242)
Q Consensus 72 ~l~~k~r~~F~~LL~e~~~i--~-~~t~W~ev~~~i~~Dprf~~l~~~d~~re~lF~eyi 128 (242)
.+-++++.-|.-||...=.. + -..+|..+.+.|.+-|.|++|+..+.-++++|++|.
T Consensus 8 r~lEqKK~yF~llL~Rvy~~~~k~kPe~WE~A~~~I~~~~Ey~~l~~E~~v~~qif~~F~ 67 (69)
T 2kfd_A 8 RILEQKKHYFWLLLQRTYTKTGKPKPSTWDLASKELGESLEYKALGDEDNIRRQIFEDFK 67 (69)
T ss_dssp HHHHHHHHHHHHHHHHHSCSSSSCCCSSHHHHHHHHTTSTTSGGGTTSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHcccCCCCCccHHHHHHHHccCHHHHHhhccHHHHHHHHHhcC
Confidence 34456667788888763321 2 344999999999999999999766667899999873
No 18
>2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae}
Probab=91.75 E-value=0.79 Score=31.63 Aligned_cols=34 Identities=15% Similarity=0.392 Sum_probs=30.0
Q ss_pred CCHHHHHHHHhhCCCcccCCCCCHHHHHHHHHHHH
Q psy9283 36 LTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHI 70 (242)
Q Consensus 36 ~sW~ea~~~l~~DpR~~~~~~L~~~ere~lF~eyi 70 (242)
-+|+.|.+.|++-|-|.++.. ...-++++|+++.
T Consensus 34 e~WE~A~~~I~~~~Ey~~l~~-E~~v~~qif~~F~ 67 (69)
T 2kfd_A 34 STWDLASKELGESLEYKALGD-EDNIRRQIFEDFK 67 (69)
T ss_dssp SSHHHHHHHHTTSTTSGGGTT-SHHHHHHHHHHHC
T ss_pred ccHHHHHHHHccCHHHHHhhc-cHHHHHHHHHhcC
Confidence 499999999999999999853 6688999999873
No 19
>2k85_A Glucocorticoid receptor DNA-binding factor 1; FF domain, P190-A rhogap, protein phosphorylation, alternative splicing, anti-oncogene, cell cycle; NMR {Homo sapiens}
Probab=91.15 E-value=0.4 Score=33.30 Aligned_cols=58 Identities=12% Similarity=0.266 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhhccccccccccccccccccHHHHHHHHhcChhhhhccCCchHH--HHHHHHHHHHHHh
Q psy9283 133 STAKAEFRELLQETKLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEHIPEER--TQIILTYLDELEK 200 (242)
Q Consensus 133 ~kare~F~elL~E~~~i~~~t~~~i~e~~~~w~ei~~~L~~D~Ry~~l~~~~~eR--~~Lf~dyi~~L~~ 200 (242)
..|.+.|.-|..-. .-.++. .|..+-..|+..|-|.....+.|.. ..||..||..|+.
T Consensus 9 ~satd~~e~LIr~~-Vtd~~~---------~W~~~skkL~~~pE~~~yv~L~G~~kaqrlF~rHi~kLk~ 68 (69)
T 2k85_A 9 ATAKDKYEWLVSRI-VKNHNE---------NWLSVSRKMQASPEYQDYVYLEGTQKAKKLFLQHIHRLKH 68 (69)
T ss_dssp THHHHHHHHHHHHH-CSSSCS---------CHHHHHHHHTTSHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhhHHH---------HhHHHHHHHhcCccHHHHHHHhChHHHHHHHHHHHHHhhc
Confidence 35677788776522 223555 8999999999999998887777555 9999999999975
No 20
>2k85_A Glucocorticoid receptor DNA-binding factor 1; FF domain, P190-A rhogap, protein phosphorylation, alternative splicing, anti-oncogene, cell cycle; NMR {Homo sapiens}
Probab=89.75 E-value=0.34 Score=33.65 Aligned_cols=45 Identities=24% Similarity=0.471 Sum_probs=38.4
Q ss_pred CCCCCCCHHHHHHHHhhCCCcccCC-CCCHHHHHHHHHHHHHHHHH
Q psy9283 31 VRNSELTWREAKRQLRKDHRWDSAD-LLDRDEKEKLFNEHIEELTK 75 (242)
Q Consensus 31 ~~~~~~sW~ea~~~l~~DpR~~~~~-~L~~~ere~lF~eyi~~l~~ 75 (242)
+.+...+|..+.+.|...|.|..+- .-...-.+.+|..||..|+.
T Consensus 23 Vtd~~~~W~~~skkL~~~pE~~~yv~L~G~~kaqrlF~rHi~kLk~ 68 (69)
T 2k85_A 23 VKNHNENWLSVSRKMQASPEYQDYVYLEGTQKAKKLFLQHIHRLKH 68 (69)
T ss_dssp CSSSCSCHHHHHHHHTTSHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHhHHHHHHHhcCccHHHHHHHhChHHHHHHHHHHHHHhhc
Confidence 8999999999999999999998541 22568889999999999874
No 21
>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens}
Probab=36.79 E-value=30 Score=22.30 Aligned_cols=31 Identities=26% Similarity=0.446 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHhh--CCCcccCCCCCHHHHHHHHH
Q psy9283 35 ELTWREAKRQLRK--DHRWDSADLLDRDEKEKLFN 67 (242)
Q Consensus 35 ~~sW~ea~~~l~~--DpR~~~~~~L~~~ere~lF~ 67 (242)
..+|++++..+.. .+.|+.+. |..|.+..+.
T Consensus 17 y~sW~ec~~qV~g~~ga~yK~F~--t~~eA~~~l~ 49 (53)
T 3bsu_A 17 FLTWNECRAQVDRFPAARFKKFA--TEDEAWAFVR 49 (53)
T ss_dssp ESSHHHHHHHHTTCTTCEEEEES--SHHHHHHHHH
T ss_pred ECCHHHHHHHhcCCCCCccCCCC--CHHHHHHHHH
Confidence 3599999999975 78999998 6688877664
No 22
>2jxc_B Stonin-2, stoned B; endocytosis, calcium, chromosomal rearrangement, cytoplasm, membrane, phosphorylation, polymorphism, proto-oncogene; NMR {Homo sapiens}
Probab=26.08 E-value=36 Score=20.99 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=12.9
Q ss_pred cccccccccccccCCCC
Q psy9283 212 PNRRLGNNYVNTFGAYP 228 (242)
Q Consensus 212 ~~~~~~~~~~~~~~~~~ 228 (242)
-.+..+-.+||+|+||-
T Consensus 24 ~l~dvqPSPINPFsafF 40 (45)
T 2jxc_B 24 TLQDVQPSPINPFSAFF 40 (45)
T ss_dssp TTSCCCCCTTCSCTTHH
T ss_pred hHHhCCCCCCChHHHhh
Confidence 34456778999999984
No 23
>1qhk_A RNAse HI, protein (ribonuclease HI); ribonuclease HI N-terminal domain, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.100.1.2
Probab=23.55 E-value=43 Score=20.95 Aligned_cols=28 Identities=18% Similarity=0.385 Sum_probs=22.7
Q ss_pred CCHHHHHHHHhh--CCCcccCCCCCHHHHHHH
Q psy9283 36 LTWREAKRQLRK--DHRWDSADLLDRDEKEKL 65 (242)
Q Consensus 36 ~sW~ea~~~l~~--DpR~~~~~~L~~~ere~l 65 (242)
.+|++++..+.. .+.|+.++ |..|.+..
T Consensus 16 ~sW~ec~~qV~g~~ga~yK~F~--t~~eA~~~ 45 (47)
T 1qhk_A 16 NTWNECKNQVDGYGGAIYKKFN--SYEQAKSF 45 (47)
T ss_dssp EEHHHHHHHSSSCSSCCCEEES--CHHHHHHH
T ss_pred CCHHHHHHHhcCCCCCccCCCC--CHHHHHHH
Confidence 489999999975 78999988 66777654
Done!