RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9283
(242 letters)
>2dof_A Transcription elongation regulator 1; FF domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: a.159.2.1
Length = 85
Score = 62.3 bits (151), Expect = 4e-13
Identities = 37/71 (52%), Positives = 52/71 (73%), Gaps = 2/71 (2%)
Query: 11 KARQEASLREREKEVQRTLA--VRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNE 68
+ R++ E + + L+ VR+S+++W + +R LRKDHRW+S LL+R+EKEKLFNE
Sbjct: 9 REREQHKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLFNE 68
Query: 69 HIEELTKKKRE 79
HIE LTKKKRE
Sbjct: 69 HIEALTKKKRE 79
Score = 25.3 bits (55), Expect = 7.5
Identities = 14/64 (21%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 68 EHIEELTKKKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDR-RCEREFKD 126
E + ++ + F+ LL++ + SW D R+ +++D R+ S +R E+ F +
Sbjct: 10 EREQHKREEAIQNFKALLSDMVRSS-DVSWSDTRRTLRKDHRWESGSLLEREEKEKLFNE 68
Query: 127 YLKD 130
+++
Sbjct: 69 HIEA 72
>3hfh_A Transcription elongation regulator 1; helix bundle, activator,
alternative splicing, coiled coil, nucleus,
phosphoprotein, repressor; HET: MLY; 2.70A {Homo
sapiens} PDB: 2kis_A 2e71_A 2kiq_A
Length = 190
Score = 53.2 bits (127), Expect = 5e-09
Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 15/111 (13%)
Query: 30 AVRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEEL-----------TKKKR 78
A N T+ E D R+ + + ++E LFNE + +
Sbjct: 84 AXFNPRATFSEFAAXHAXDSRFXAIEX--MXDREALFNEFVAAARXXEXEDSXTRGEXIX 141
Query: 79 EKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLK 129
F ELL+ + S W + ++ DPRY SS R E F Y++
Sbjct: 142 SDFFELLSNH-HLDSQSRWSXVXDXVESDPRYXAVDSSSMR-EDLFXQYIE 190
Score = 34.7 bits (79), Expect = 0.012
Identities = 24/132 (18%), Positives = 46/132 (34%), Gaps = 14/132 (10%)
Query: 74 TKKKRE-KFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKT 132
R +F ++L E V+ S+W+ I DPRY + +R F Y+ +
Sbjct: 3 LGSARMXQFXDMLLE-RGVSAFSTWEXELHXIVFDPRYLLLNPXERXQ--VFDQYVXTRA 59
Query: 133 STAKAEFRELLQETKLISHKSLGLLHENEN-----YLSEIEEILRNDKRFLSLEHIPEER 187
+ E + + + + + E SE D RF ++E +R
Sbjct: 60 EEERREXXNXIMQ----AXEDFXXMMEEAXFNPRATFSEFAAXHAXDSRFXAIE-XMXDR 114
Query: 188 TQIILTYLDELE 199
+ ++
Sbjct: 115 EALFNEFVAAAR 126
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 5e-05
Identities = 31/167 (18%), Positives = 56/167 (33%), Gaps = 47/167 (28%)
Query: 30 AVRNSELTWREAKRQLRKDHRWDSADLLDRDEKEK--LFNEHIEELTKKKREKFRELLNE 87
A ++ W A + + + D++ + F E K+ RE + ++ E
Sbjct: 1641 AAQD---VWNRADNHFKDTYGFSILDIVINNPVNLTIHFG---GEKGKRIRENYSAMIFE 1694
Query: 88 TSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTS--------TAKAEF 139
T + K +++ + YT F S K L T KA F
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYT-FRSE--------KGLL-SATQFTQPALTLMEKAAF 1744
Query: 140 RELLQETKLIS------HKSLGLLHENE--------NYLSEIEEILR 172
+L + + + H SLG E + +S IE ++
Sbjct: 1745 EDLKSKGLIPADATFAGH-SLG-----EYAALASLADVMS-IESLVE 1784
Score = 36.6 bits (84), Expect = 0.006
Identities = 26/222 (11%), Positives = 60/222 (27%), Gaps = 93/222 (41%)
Query: 69 HIEELTKKKREKFRELLNETSEVTLSSSWKDIRKLIKEDP--------RYTKF------- 113
+L +E+F ++L E +E D ++P ++ +
Sbjct: 29 IASQL----QEQFNKILPEPTE----GFAAD------DEPTTPAELVGKFLGYVSSLVEP 74
Query: 114 SSSDRRCE------REF-KDYLKDK------------TSTAKAEFRELLQ---ETKLISH 151
S + + EF YL+ T + +EL++ ++++
Sbjct: 75 SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAK 134
Query: 152 KSLGLLHE-----------------------NENYLSEIEE------------ILRNDKR 176
+ ++Y E+ + I + +
Sbjct: 135 RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAET 194
Query: 177 FLSLEHIPEERTQI------ILTYLDELEKRGPPPPPTASEP 212
L + ++ IL +L+ P S P
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLENPSNT-PDKDYLLSIP 235
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 5e-05
Identities = 31/187 (16%), Positives = 64/187 (34%), Gaps = 45/187 (24%)
Query: 22 EKEVQRTLAVRNS-ELTWR------EAKRQLRKD---HR-----------WDSADLLDRD 60
K + +L + E T E K +L + HR +DS DL+
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 61 EKEKLFNE---HIEELTK-KKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSS 116
+ ++ H++ + ++ FR + L + + +K+ + + S
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVF-------LDFRFLE-QKIRHDSTAWNASGSI 520
Query: 117 DRRCE--REFKDYLKDKTSTAKAEFRELLQ-----ETKLISHKS-----LGLLHENENYL 164
+ + +K Y+ D + +L E LI K + L+ E+E
Sbjct: 521 LNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580
Query: 165 SEIEEIL 171
E + +
Sbjct: 581 EEAHKQV 587
Score = 42.9 bits (100), Expect = 6e-05
Identities = 44/243 (18%), Positives = 77/243 (31%), Gaps = 65/243 (26%)
Query: 15 EASLREREKE--VQRTLAVRNSELTWREAKR----------QLRKDH--RWDSADLLDRD 60
+L E + + + L R +L RE + +D WD+ ++ D
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLP-REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353
Query: 61 EKEKLFNEHIEELT-KKKREKFREL--LNETSEV---TLSSSWKDI-------------- 100
+ + + L + R+ F L ++ + LS W D+
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 101 RKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTSTAKAEFRELL---QETKLISHKSLGLL 157
L+++ P+ + S E LK K A R ++ K L
Sbjct: 414 YSLVEKQPKESTISIPSIYLE------LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 158 HENENY--------LSEIE-----EILRN---DKRFLS--LEH--IPEERTQIILTYLDE 197
+ + Y L IE + R D RFL + H + IL L +
Sbjct: 468 YL-DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526
Query: 198 LEK 200
L+
Sbjct: 527 LKF 529
Score = 32.1 bits (72), Expect = 0.15
Identities = 35/234 (14%), Positives = 81/234 (34%), Gaps = 61/234 (26%)
Query: 6 KDADKKARQEASLRE--REKEVQRTLAVRNSE-----LTWR-EAKRQ----------LRK 47
+ D K Q+ + ++E+ + +++ L W +K++ LR
Sbjct: 31 DNFDCKDVQD-MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89
Query: 48 DHRW----------DSADLLDR--DEKEKLFNE-------HI--EELTKKKREKFRELLN 86
++++ + + +++++L+N+ ++ + K R+ EL
Sbjct: 90 NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL-R 148
Query: 87 ETSEVTLSS------SWKDIRKLIKEDPRYTKFSSSDRRCEREFKDY-LKDKTSTAKAEF 139
V + +W + + S +C+ +FK + L K +
Sbjct: 149 PAKNVLIDGVLGSGKTW-----VALDVCL-----SYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 140 RELLQET-KLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEHIPEERTQIIL 192
E+LQ+ I + N I I +R L + P E ++L
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK--PYENCLLVL 250
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 36.2 bits (84), Expect = 0.009
Identities = 25/157 (15%), Positives = 51/157 (32%), Gaps = 14/157 (8%)
Query: 10 KKARQEASLREREKEVQRTLAVRNSELTWR------------EAKRQLRKDHRWDSADLL 57
KK + EA ER K++ L + +L + E L + ++ L
Sbjct: 907 KKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLR 966
Query: 58 DRDEKEKLFNEHIEELTKKKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSD 117
E+ ++ E + T + E+ E L + + + + + +Y +
Sbjct: 967 SDVERLRMSEEEAKNATNRVLSLQEEIAKLRKE--LHQTQTEKKTIEEWADKYKHETEQL 1024
Query: 118 RRCEREFKDYLKDKTSTAKAEFRELLQETKLISHKSL 154
+E LK + + +E K L
Sbjct: 1025 VSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKL 1061
Score = 31.6 bits (72), Expect = 0.24
Identities = 18/107 (16%), Positives = 48/107 (44%), Gaps = 5/107 (4%)
Query: 1 MNETDKDADKKARQEASLREREKEVQRTLAVRNSELTWREAKRQLRKDHRWDSADLLDR- 59
+ ++++A + SL+E ++++ L +E ++ + ++ ++ L+
Sbjct: 972 LRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTE---KKTIEEWADKYKHETEQLVSEL 1028
Query: 60 DEKEKLFNEHIEELTKKKREKFRELLNETSEVTLSSSWKDIRKLIKE 106
E+ L EEL ++ ++ +E + ET E L K + + +
Sbjct: 1029 KEQNTLLKTEKEELNRRIHDQAKE-ITETMEKKLVEETKQLELDLND 1074
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure,
transcription, phosphopeptide recognition, RNA
polymerase II carboxyl- terminal domain; NMR {Homo
sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Length = 71
Score = 32.9 bits (75), Expect = 0.010
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 67 NEHIEELTKKKREK-FRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFK 125
+ TK++ ++ F+ELL E V ++SW+ K+I DPRY+ + + + F
Sbjct: 6 KKTYTWNTKEEAKQAFKELLKE-KRVPSNASWEQAMKMIINDPRYSALAKLSEKKQ-AFN 63
Query: 126 DYLKDK 131
Y
Sbjct: 64 AYKVQT 69
>2dod_A Transcription elongation regulator 1; FF domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
a.159.2.1
Length = 82
Score = 33.0 bits (75), Expect = 0.014
Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 68 EHIEELTKKKR-EKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKD 126
+ + R ++F+++L E V+ S+W+ I DPRY + +R+ + F
Sbjct: 9 RERAIVPLEARMKQFKDMLLE-RGVSAFSTWEKELHKIVFDPRYLLLNPKERK--QVFDQ 65
Query: 127 YLKDKTSTAKAEFR 140
Y+K + +
Sbjct: 66 YVKTRAEEERRSGP 79
>2doe_A Transcription elongation regulator 1; FF domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
a.159.2.1
Length = 83
Score = 33.0 bits (75), Expect = 0.014
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 75 KKKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTST 134
+K + F ELL+ + S W ++ ++ DPRY SS R E FK Y++
Sbjct: 17 EKIKSDFFELLSN-HHLDSQSRWSKVKDKVESDPRYKAVDSSSMR-EDLFKQYIEKIAKN 74
Query: 135 AKAEFRE 141
+
Sbjct: 75 LDSSGPS 81
Score = 29.5 bits (66), Expect = 0.22
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 33 NSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTKKKREKFRE 83
+S+ W + K ++ D R+ + D +E LF ++IE++ K
Sbjct: 33 DSQSRWSKVKDKVESDPRYKAVD--SSSMREDLFKQYIEKIAKNLDSSGPS 81
>2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue,
haloacid dehalogenase superfamily, isomerase,
phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis}
PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A*
1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A
Length = 221
Score = 34.5 bits (80), Expect = 0.017
Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 26 QRTLAVRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTKKKREKFRELL 85
+ R+ QL+ R DS + +K+ E +EL K+K + + +++
Sbjct: 25 KALAEEIGINGVDRQFNEQLKGVSREDSLQKILDLADKKVSAEEFKELAKRKNDNYVKMI 84
Query: 86 NETSEVTLSSSWKDIRKLIKE 106
+ S + + I +L+K+
Sbjct: 85 QDVSPADV---YPGILQLLKD 102
>2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima}
SCOP: a.4.1.9 a.121.1.1 PDB: 3ih2_A 3ih3_A 3ih4_A
1zkg_A* 2iek_A* 1z77_A*
Length = 202
Score = 34.4 bits (79), Expect = 0.019
Identities = 11/88 (12%), Positives = 32/88 (36%), Gaps = 4/88 (4%)
Query: 62 KEKLFNEHIEELTKKKREKFRELLNETSEVT----LSSSWKDIRKLIKEDPRYTKFSSSD 117
KE+L+ + +T+K +++F L + + + + P F +
Sbjct: 49 KEELYYQAYMSVTEKLQKEFENFLMKNRNRDIFDFMERWIEKKLEYSASHPEEADFLITL 108
Query: 118 RRCEREFKDYLKDKTSTAKAEFRELLQE 145
+ + + ++ F + ++E
Sbjct: 109 VSVDEGLRKRILLDLEKSQRVFFDFVRE 136
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.1 bits (72), Expect = 0.10
Identities = 14/86 (16%), Positives = 30/86 (34%), Gaps = 11/86 (12%)
Query: 10 KKARQEA-SLRE-REKEVQRTLAVRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFN 67
+ QE S+R+ RE+ + L +A + + W D +E + +
Sbjct: 78 DRLTQEPESIRKWREE--------QRKRLQELDAASK-VMEQEWREKAKKDLEEWNQRQS 128
Query: 68 EHIEELTKKKREKFRELLNETSEVTL 93
E +E+ R + + +
Sbjct: 129 EQVEKNKINNRIADKAFYQQPDADII 154
Score = 29.7 bits (66), Expect = 0.53
Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 20/93 (21%)
Query: 14 QEASLREREKEVQRTLAVRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEEL 73
Q L + E E R WRE +++ R L + D K+ + E
Sbjct: 76 QADRLTQ-EPESIRK---------WRE-EQRKR---------LQELDAASKVMEQEWREK 115
Query: 74 TKKKREKFRELLNETSEVTLSSSWKDIRKLIKE 106
KK E++ + +E E ++ + ++
Sbjct: 116 AKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQ 148
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Length = 77
Score = 29.6 bits (66), Expect = 0.19
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 75 KKKREKFRELLNE-TSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKD 130
K+K F+ +L + + L + W+DIR+ ++P + + R +R FKD++
Sbjct: 9 KRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEPAFEDITLESER-KRIFKDFMHV 64
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin
repressor-like, C-terminal D homeodomain-like,
DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex
aeolicus}
Length = 179
Score = 31.0 bits (70), Expect = 0.20
Identities = 27/124 (21%), Positives = 47/124 (37%), Gaps = 17/124 (13%)
Query: 62 KEKLFNEHIEELTKKKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCE 121
KE+L E IE KK F E +T E L + +++ + + D C
Sbjct: 46 KEELITEIIERTHKKIISLFEENKEKTPEELL----EMFLEVLYREKKVVYIFLFDLLCS 101
Query: 122 REFKDYLKDKTSTAKAEFRELLQETK-------------LISHKSLGLLHENENYLSEIE 168
+F++ +K AK F + L++ + L + + E L ++
Sbjct: 102 EKFRNIYFEKIEDAKRRFEKFLEKHFPSKAEILSEIILGFLRQLILHYVIKEERELPFLK 161
Query: 169 EILR 172
E LR
Sbjct: 162 EKLR 165
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 30.0 bits (68), Expect = 0.64
Identities = 10/90 (11%), Positives = 28/90 (31%)
Query: 1 MNETDKDADKKARQEASLREREKEVQRTLAVRNSELTWREAKRQLRKDHRWDSADLLDRD 60
+ + K A + + + K + + + + +
Sbjct: 189 IEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVINNETEQLK 248
Query: 61 EKEKLFNEHIEELTKKKREKFRELLNETSE 90
+EK ++ KK++E F + + S+
Sbjct: 249 AEEKKILNQFLKIKKKRKELFEKTFDYVSD 278
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase;
HET: FAD; 2.50A {Synechococcus SP}
Length = 402
Score = 30.2 bits (68), Expect = 0.64
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 22 EKEVQRTLA--VRNSELTWREAKRQLRKDHRW 51
+ + T L W E +R ++K+HRW
Sbjct: 366 QPPIDETFTAEAEKRGLNWEEMRRSMKKEHRW 397
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf
transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB:
3vox_A 3vok_A*
Length = 189
Score = 29.3 bits (65), Expect = 0.82
Identities = 20/124 (16%), Positives = 44/124 (35%), Gaps = 6/124 (4%)
Query: 60 DEKEKLFNEHIEELTKKKREKFRELLNETS-EVTLSSSWKDIRKLIKEDPRYT----KFS 114
++ + + + + T + + F LL + S E +L + + + + P+Y +F
Sbjct: 54 EDLKDAYFYVLSQETLEIHDLFFNLLKDNSIEESLDKYKYLLLENLIDSPQYKLYKYRFL 113
Query: 115 SSDRRCEREFKDYLKDKTSTAKAEFRELLQETKLISHKSLGLLHENENYLSEIEEILRND 174
ER++K T A + Q K + H + L E +
Sbjct: 114 DWTYELERDWKPQSS-ATVPASENDNPISQVLKSVVHNLVYRLFSENWTEKTFIENYDKE 172
Query: 175 KRFL 178
+ +
Sbjct: 173 IKLV 176
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR,
reductase reductase, phycobilisome, thylakoid; HET: FAD;
1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A*
2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A*
1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A*
1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Length = 304
Score = 28.9 bits (65), Expect = 1.4
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 22 EKEVQRTLA--VRNSELTWREAKRQLRKDHRW 51
E+ + L+ +TW + ++ L+K RW
Sbjct: 268 EEGIDAALSAAAAKEGVTWSDYQKDLKKAGRW 299
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase
(NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia
oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A*
1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A*
1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Length = 314
Score = 28.5 bits (64), Expect = 1.7
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 22 EKEVQRTLA--VRNSELTWREAKRQLRKDHRW 51
EK + + + W E KRQL+K +W
Sbjct: 278 EKGIDDIMVSLAAAEGIDWIEYKRQLKKAEQW 309
>2juc_A PRE-mRNA-splicing factor URN1; FF, helical bundle, solution, mRNA
processing, nucleus, spliceosome, unknown function; NMR
{Saccharomyces cerevisiae}
Length = 59
Score = 26.5 bits (58), Expect = 1.8
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 78 REKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDY 127
R F EL + ++ S+W K I+ DP + K R E F+++
Sbjct: 9 RNIFFELFDR-YKLDKFSTWSLQSKKIENDPDFYKIRDDTVR-ESLFEEW 56
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 28.7 bits (64), Expect = 1.9
Identities = 10/137 (7%), Positives = 35/137 (25%)
Query: 66 FNEHIEELTKKKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFK 125
+ + +K E +LL +I K ++ + + + + +
Sbjct: 137 IAKFLSLKPSEKLETVAKLLGIDEFEKCYQKMGEIVKEYEKRLERIEGELNYKEESLKAR 196
Query: 126 DYLKDKTSTAKAEFRELLQETKLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEHIPE 185
K + + ++ + + + I + S +P
Sbjct: 197 LKEMSNLEKEKEKLTKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPY 256
Query: 186 ERTQIILTYLDELEKRG 202
++ + +
Sbjct: 257 SFVELTKDFEVRVHAPN 273
>1m4u_A Noggin; BMP antagonist, BMP-7, bone morphogenetic protein, C knot,
hormone-growth factor complex; HET: NAG; 2.42A {Homo
sapiens} SCOP: g.17.1.7
Length = 206
Score = 28.2 bits (62), Expect = 1.9
Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 2/92 (2%)
Query: 21 REKEVQRTLAVRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTKKKREK 80
++ A +E + ++ +++ + E L + L+KK R K
Sbjct: 59 EDRPGGGGGAAGGAEDLAELDQLLRQRPSGAMPSEIKGLEFSEGLAQGKKQRLSKKLRRK 118
Query: 81 FRELLNETSEVTLSSSWKDIRKLIKEDPRYTK 112
+ L + + +W D+ PRY K
Sbjct: 119 LQMWLWSQTFCPVLYAWNDLGSRFW--PRYVK 148
>3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics,
protein structure initiative, NEW research center for
structural genomics; 3.00A {Bacillus subtilis}
Length = 233
Score = 28.0 bits (63), Expect = 2.3
Identities = 10/70 (14%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 26 QRTLAVRNSELTWREAKRQLRKDHRWDSADLL--DRDEKEKLFNEHIEELTKKKREKFRE 83
+ + + +L+ R +S + + + K N +EL +K ++
Sbjct: 25 KHIAEQIDIPFDR-DMNERLKGISREESLESILIFGGAETKYTNAEKQELMHRKNRDYQM 83
Query: 84 LLNETSEVTL 93
L+++ + L
Sbjct: 84 LISKLTPEDL 93
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase,
FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB:
3lvb_A* 1jb9_A*
Length = 311
Score = 27.8 bits (62), Expect = 3.2
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 22 EKEVQRTLA--VRNSELTWREAKRQLRKDHRW 51
+Q TL +W + QL+K+ +W
Sbjct: 275 MPGIQDTLKKVAERRGESWDQKLAQLKKNKQW 306
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A
{Leptospira interrogans} PDB: 2rc6_A*
Length = 314
Score = 27.5 bits (61), Expect = 4.6
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 22 EKEVQRTL-AVRNSELTWREAKRQLRKDHRW 51
EK V + + + T+ E K L H+
Sbjct: 279 EKGVIEEIQKISGNTGTYEEFKHHLEGAHQL 309
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG;
3.00A {Homo sapiens} PDB: 4ap6_A*
Length = 408
Score = 27.4 bits (60), Expect = 4.6
Identities = 16/123 (13%), Positives = 39/123 (31%), Gaps = 4/123 (3%)
Query: 66 FNEHIEELTKKKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFK 125
F H+ E+ + R + ++ + W ++ + RR ++F
Sbjct: 221 FARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKMKVKLGSALGGPYLGVHLRR--KDFI 278
Query: 126 DYLKDKTSTAKAEFRELLQETKLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEHIPE 185
+ + + R++ K + + + E EE+ + + E E
Sbjct: 279 WGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRK--EYEELKKLLPEMVRFEPTWE 336
Query: 186 ERT 188
E
Sbjct: 337 ELE 339
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA,
ribosomal; 10.80A {Bos taurus}
Length = 537
Score = 27.2 bits (61), Expect = 5.4
Identities = 13/85 (15%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 9 DKKARQEASLREREKEVQRTLAVRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNE 68
+ +AR+ R+ E+E ++ E +++ ++ HR D KE+ + +
Sbjct: 261 EPRAREVVDWRKYEQEQEKNKEDLKLIE---EKRKEHQEAHRKDREKYGTVHWKERSYIK 317
Query: 69 HIEELTKKKREKFRELLNETSEVTL 93
+ E+ ++ + +L +++ + +
Sbjct: 318 YREKRQQQPLKPKEKLERDSNVLPV 342
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex,
hydrolase/DNA complex complex; 3.00A {Sulfolobus
solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Length = 500
Score = 27.1 bits (61), Expect = 6.3
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 68 EHIEELTKKKREKFRELLNETSEVTLSSSWKDIRKLIK 105
E I++L KR F+++++ S +++RK+I+
Sbjct: 457 EKIDQLLAFKRSLFKDIISSGDSWITELSTEELRKVIE 494
>4a17_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila}
Length = 185
Score = 26.5 bits (58), Expect = 7.3
Identities = 11/21 (52%), Positives = 18/21 (85%)
Query: 86 NETSEVTLSSSWKDIRKLIKE 106
NE+SE+++++S IRKLIK+
Sbjct: 27 NESSEISMANSRASIRKLIKD 47
>2k85_A Glucocorticoid receptor DNA-binding factor 1; FF domain, P190-A
rhogap, protein phosphorylation, alternative splicing,
anti-oncogene, cell cycle; NMR {Homo sapiens}
Length = 69
Score = 25.0 bits (54), Expect = 8.7
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 31 VRNSELTWREAKRQLRKDHRW-DSADLLDRDEKEKLFNEHIEEL 73
V+N W R+++ + D L + +KLF +HI L
Sbjct: 23 VKNHNENWLSVSRKMQASPEYQDYVYLEGTQKAKKLFLQHIHRL 66
>2fqh_A Hypothetical protein TA0938; structural genomics, Zn-binding,,
ontario centre for structural proteomics, OCSP, unknown
function; NMR {Thermoplasma acidophilum}
Length = 109
Score = 25.5 bits (55), Expect = 8.8
Identities = 9/60 (15%), Positives = 21/60 (35%)
Query: 82 RELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTSTAKAEFRE 141
E +N E ++ ++ +L + + + E + Y+K EF+
Sbjct: 48 AEFMNMMDEAFKHTARHNVDELHIDGNYQLGRNVLLKNGEDRLRFYVKFGPGAVIKEFKI 107
>3pas_A TETR family transcription regulator; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Length = 195
Score = 26.2 bits (58), Expect = 9.4
Identities = 8/86 (9%), Positives = 29/86 (33%), Gaps = 3/86 (3%)
Query: 62 KEKLFNEHIEELTKKKREKFRELLNETSEV--TLSSSWKDIRKLIKEDPRYTKFSSSDRR 119
KE+L ++ + + + + ++ L W + ++ E P ++ +
Sbjct: 52 KEQLLLATFYYVSDQVIDAALDSFSRGKDLREGLRRQWHTLFRIGLERPELFRYHET-FT 110
Query: 120 CEREFKDYLKDKTSTAKAEFRELLQE 145
++ + + A + +
Sbjct: 111 HSAWMTPEIQARNESRAANLLNAVDQ 136
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural
genomics, PSI, protein structure initiative; 2.80A
{Escherichia coli} SCOP: d.144.1.6
Length = 328
Score = 26.2 bits (57), Expect = 9.6
Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 10/78 (12%)
Query: 159 ENENYLSEIEE-----ILRNDKRFLSLEHIPEERTQIILTYLDELEKRGPPPPPTASEPN 213
EN Y + E+ + + + I EE + +L P +
Sbjct: 38 ENRVYQFQDEDRRRFVVKFYRPERWTADQILEE-----HQFALQLVNDEVPVAAPVAFNG 92
Query: 214 RRLGNNYVNTFGAYPKPG 231
+ L N+ F +P G
Sbjct: 93 QTLLNHQGFYFAVFPSVG 110
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 26.3 bits (57), Expect = 9.9
Identities = 13/88 (14%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 9 DKKARQEASLREREKEVQR--TLAVRNSELTWREAKRQLRKDHRWDSADLLDR----DEK 62
+++ A +++ E E+++ + V+ ++++ +L++ H +L + +EK
Sbjct: 322 EERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEK 381
Query: 63 EKLFNEHIEELTKKKREKFRELLNETSE 90
+ F + ++R ++ + T E
Sbjct: 382 RRQFEDEKANWEAQQRILEQQNSSRTLE 409
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.130 0.366
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,732,504
Number of extensions: 222285
Number of successful extensions: 765
Number of sequences better than 10.0: 1
Number of HSP's gapped: 739
Number of HSP's successfully gapped: 120
Length of query: 242
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 151
Effective length of database: 4,160,982
Effective search space: 628308282
Effective search space used: 628308282
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (25.9 bits)