RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9283
(242 letters)
>d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 49.0 bits (117), Expect = 7e-09
Identities = 37/71 (52%), Positives = 51/71 (71%), Gaps = 2/71 (2%)
Query: 11 KARQEASLREREKEVQRTL--AVRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNE 68
+ R++ E + + L VR+S+++W + +R LRKDHRW+S LL+R+EKEKLFNE
Sbjct: 2 REREQHKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLFNE 61
Query: 69 HIEELTKKKRE 79
HIE LTKKKRE
Sbjct: 62 HIEALTKKKRE 72
Score = 28.9 bits (65), Expect = 0.098
Identities = 13/57 (22%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 75 KKKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRC-EREFKDYLKD 130
++ + F+ LL++ + SW D R+ +++D R+ S +R E+ F ++++
Sbjct: 10 EEAIQNFKALLSD-MVRSSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLFNEHIEA 65
>d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 69
Score = 39.7 bits (93), Expect = 1e-05
Identities = 14/71 (19%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 11 KARQEASLREREKEVQRTL--AVRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNE 68
+ R L R K+ + L ++ TW + ++ D R+ LL+ E++++F++
Sbjct: 2 RERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYL---LLNPKERKQVFDQ 58
Query: 69 HIEELTKKKRE 79
+++ +++R
Sbjct: 59 YVKTRAEEERR 69
Score = 32.4 bits (74), Expect = 0.005
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 75 KKKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDK 131
+ + ++F+++L E V+ S+W+ I DPRY + +R ++ F Y+K +
Sbjct: 10 EARMKQFKDMLLER-GVSAFSTWEKELHKIVFDPRYLLLNPKER--KQVFDQYVKTR 63
>d2doea1 a.159.2.1 (A:784-853) Transcription elongation regulator
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 70
Score = 35.5 bits (82), Expect = 5e-04
Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 11 KARQEASLREREKEVQRTL--AVRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNE 68
K + + + + L +S+ W + K ++ D R+ + + +E LF +
Sbjct: 2 KEDSKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKA--VDSSSMREDLFKQ 59
Query: 69 HIEELTKKKR 78
+IE++ K
Sbjct: 60 YIEKIAKNLD 69
Score = 31.2 bits (71), Expect = 0.017
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 75 KKKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKD 130
+K + F ELL+ + S W ++ ++ DPRY SS R E FK Y++
Sbjct: 10 EKIKSDFFELLSNH-HLDSQSRWSKVKDKVESDPRYKAVDSSSMR-EDLFKQYIEK 63
>d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId:
9606]}
Length = 69
Score = 33.6 bits (77), Expect = 0.002
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 30 AVRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTK 75
S +W +A + + D R+ + L EK++ FN + + K
Sbjct: 26 KRVPSNASWEQAMKMIINDPRYSA--LAKLSEKKQAFNAYKVQTEK 69
Score = 33.6 bits (77), Expect = 0.002
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 75 KKKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDK 131
++ ++ F+ELL E V ++SW+ K+I DPRY+ + + ++ F Y
Sbjct: 13 EEAKQAFKELLKE-KRVPSNASWEQAMKMIINDPRYSALAKLSEK-KQAFNAYKVQT 67
>d2b7ea1 a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP40
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 56
Score = 28.5 bits (64), Expect = 0.10
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 81 FRELLNETSEVTLSSSW-KDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDK 131
F +L E ++V + S+ + I +L DPRY + F+ YL ++
Sbjct: 6 FITMLKE-NQVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYLSNR 56
Score = 25.9 bits (57), Expect = 1.1
Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
Query: 135 AKAEFRELLQETKLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEHIPEERTQIILTY 194
A+ EF +L+E ++ S ++ I E+ D R+ ++ P + ++ Y
Sbjct: 2 AEKEFITMLKENQVDS---------TWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKY 52
Query: 195 LDE 197
L
Sbjct: 53 LSN 55
>d2cqna1 a.159.2.1 (A:743-806) Hypa/FBP11 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 64
Score = 28.3 bits (63), Expect = 0.15
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 75 KKKREKFRELLNE-TSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYL 128
K+K F+ +L + + L + W+DIR+ ++P + + R +R FKD++
Sbjct: 2 KRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEPAFEDITLESER-KRIFKDFM 55
>d1m4ua_ g.17.1.7 (A:) Noggin {Human (Homo sapiens) [TaxId: 9606]}
Length = 206
Score = 28.4 bits (63), Expect = 0.54
Identities = 10/50 (20%), Positives = 20/50 (40%)
Query: 50 RWDSADLLDRDEKEKLFNEHIEELTKKKREKFRELLNETSEVTLSSSWKD 99
+++ + E L + L+KK R K + L + + +W D
Sbjct: 88 GAMPSEIKGLEFSEGLAQGKKQRLSKKLRRKLQMWLWSQTFCPVLYAWND 137
>d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase
UGT71G1 {Medicago truncatula [TaxId: 3880]}
Length = 461
Score = 27.8 bits (60), Expect = 1.3
Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 50 RWDSADLLDRDEKEKLFNEHIEELTKKKREKFRELLNETSEVTLS---SSWKDIRKLIKE 106
+D++ +E EK + +++ +K +E+ E S + SS + KLI +
Sbjct: 401 YRKGSDVVAAEEIEKGLKDLMDK-DSIVHKKVQEM-KEMSRNAVVDGGSSLISVGKLIDD 458
>d1vqop1 a.94.1.1 (P:1-143) Ribosomal protein L19 (L19e) {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 143
Score = 26.6 bits (59), Expect = 1.8
Identities = 4/21 (19%), Positives = 12/21 (57%)
Query: 86 NETSEVTLSSSWKDIRKLIKE 106
++ + + +D+R+L+ E
Sbjct: 26 ERQGDIADAITREDVRELVDE 46
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 244
Score = 27.0 bits (58), Expect = 1.8
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 68 EHIEELTKKKREKFRELLNETSEVTLSSSWKDIRKLIK 105
E I++L KR F+++++ S +++RK+I+
Sbjct: 201 EKIDQLLAFKRSLFKDIISSGDSWITELSTEELRKVIE 238
>d2vvpa1 c.121.1.1 (A:3-158) Alternate ribose 5-phosphate isomerase
B, RpiB {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 156
Score = 26.1 bits (57), Expect = 2.6
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 175 KRFLSLEHIPEERTQIILTYLDELEKRGPPPP 206
F++ +R Q + L E E+ PP
Sbjct: 123 DAFVTTPWSKAQRHQRRIDILAEYERTHEAPP 154
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Length = 493
Score = 26.8 bits (59), Expect = 3.0
Identities = 25/162 (15%), Positives = 58/162 (35%), Gaps = 16/162 (9%)
Query: 45 LRKDHRWDSADLLDR---DEKEKLFNEHIEELTKKKREKFRELLNETSEVTLSSSWKDIR 101
+ + ++ DR E + +I+ + + R +T+ V ++
Sbjct: 333 VTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVA 392
Query: 102 KLIK--EDPRYTKFSSSDRRCEREFKDYLKDKTSTAKAEFRELLQETKLISHKSLGLLHE 159
+++ D R+ YL ++ + A + R L + T L E
Sbjct: 393 AMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLR-LQKLTGL----------E 441
Query: 160 NENYLSEIEEILRNDKRFLSLEHIPEERTQIILTYLDELEKR 201
+E L E +E+L L + + ++I L+ + ++
Sbjct: 442 HEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQ 483
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 477
Score = 26.4 bits (58), Expect = 3.2
Identities = 19/124 (15%), Positives = 44/124 (35%), Gaps = 8/124 (6%)
Query: 54 ADLLDRDEKEKLFNEHIEELTKKKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKF 113
A+LL D+ + +E K+ + F L + L S + + L++ K
Sbjct: 100 AELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKL 159
Query: 114 SSSDRRCEREFKDYLKDKTSTAKAEFRE----LLQETKLISHKSLGLLHENENYLSEIEE 169
+ + + + + + LLQE +I + + ++ + +
Sbjct: 160 VEKLLK----NNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFK 215
Query: 170 ILRN 173
IL+
Sbjct: 216 ILQR 219
>d2pgga1 e.8.1.4 (A:31-804) Viral RNA polymerase {Avian infectious
bursal disease virus [TaxId: 10995]}
Length = 774
Score = 25.7 bits (56), Expect = 6.5
Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 195 LDELEKRGPPPPPTASEPNRRLGNNYVN---TFGAYPKP 230
L EL K PP PP + P G V+ G Y
Sbjct: 660 LAELNKPVPPKPPNVNRPVNTGGLKAVSNALKTGRYRNE 698
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.130 0.366
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 916,643
Number of extensions: 45188
Number of successful extensions: 217
Number of sequences better than 10.0: 1
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 58
Length of query: 242
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 159
Effective length of database: 1,268,006
Effective search space: 201612954
Effective search space used: 201612954
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.3 bits)