BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9284
(82 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EDH|A Chain A, Crystal Structure Of Bone Morphogenetic Protein 1 Protease
Domain In Complex With Partially Bound Dmso
Length = 201
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 7 VLTENIGPGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYP--GA 64
++ ENI PG E+N + V + YD+ SIMHY+ FS+ TIVP Y G
Sbjct: 116 IVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGV 175
Query: 65 EDTMGQRDAMSRVD 78
+ +GQR +S+ D
Sbjct: 176 KPPIGQRTRLSKGD 189
>pdb|3EDG|A Chain A, Crystal Structure Of Bone Morphogenetic Protein 1 Protease
Domain
Length = 202
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 7 VLTENIGPGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYP--GA 64
++ ENI PG E+N + V + YD+ SIMHY+ FS+ TIVP Y G
Sbjct: 117 IVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGV 176
Query: 65 EDTMGQRDAMSRVD 78
+ +GQR +S+ D
Sbjct: 177 KPPIGQRTRLSKGD 190
>pdb|3LQB|A Chain A, Crystal Structure Of The Hatching Enzyme Zhe1 From The
Zebrafish Danio Rerio
Length = 199
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 10 ENIGPGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMG 69
NI PG +N ++ + T PYDYGS+MHY AF+ +TI P+ P +G
Sbjct: 125 NNISPGMAYNFLKQKTNNQNT---PYDYGSLMHYGKTAFAIQPGLETITPI-PDENVQIG 180
Query: 70 QRDAMSRVDQKR 81
QR +S++D R
Sbjct: 181 QRQGLSKIDILR 192
>pdb|3EDI|A Chain A, Crystal Structure Of Tolloid-Like Protease 1 (Tll-1)
Protease Domain
Length = 201
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 7 VLTENIGPGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYP--GA 64
++ ENI PG E+N + G V + YD+ SIMHY+ FS+ TI+P G
Sbjct: 116 IIRENIQPGQEYNFLKMEPGEVNSLGERYDFDSIMHYARNTFSRGMFLDTILPSRDDNGI 175
Query: 65 EDTMGQRDAMSRVD 78
+GQR +S+ D
Sbjct: 176 RPAIGQRTRLSKGD 189
>pdb|4GWN|A Chain A, Crystal Structure Of Human Mature Meprin Beta
Length = 553
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 6 QVLTENIGPGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAE 65
+++ + I G E N + ++PYDY S+MHYS AF ++G TIV E
Sbjct: 113 RIMWDRILSGREHNFNTYSDDISDSLNVPYDYTSVMHYSKTAF-QNGTEPTIVTRISDFE 171
Query: 66 DTMGQRDAMSRVD 78
D +GQR S D
Sbjct: 172 DVIGQRMDFSDSD 184
>pdb|4GWM|A Chain A, Crystal Structure Of Human Promeprin Beta
pdb|4GWM|B Chain B, Crystal Structure Of Human Promeprin Beta
Length = 592
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 6 QVLTENIGPGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAE 65
+++ + I G E N + ++PYDY S+MHYS AF ++G TIV E
Sbjct: 152 RIMWDRILSGREHNFNTYSDDISDSLNVPYDYTSVMHYSKTAF-QNGTEPTIVTRISDFE 210
Query: 66 DTMGQRDAMSRVD 78
D +GQR S D
Sbjct: 211 DVIGQRMDFSDSD 223
>pdb|1AST|A Chain A, Structure Of Astacin And Implications For Activation Of
Astacins And Zinc-Ligation Of Collagenases
pdb|1IAA|A Chain A, Crystal Structures, Spectroscopic Features, And Catalytic
Properties Of Cobalt(Ii), Copper(Ii), Nickel(Ii), And
Mercury(Ii) Derivatives Of The Zinc Endopeptidase
Astacin. A Correlation Of Structure And Proteolytic
Activity
pdb|1IAB|A Chain A, Crystal Structures, Spectroscopic Features, And Catalytic
Properties Of Cobalt(Ii), Copper(Ii), Nickel(Ii), And
Mercury(Ii) Derivatives Of The Zinc Endopeptidase
Astacin. A Correlation Of Structure And Proteolytic
Activity
pdb|1IAC|A Chain A, Refined 1.8 Angstroms X-Ray Crystal Structure Of Astacin,
A Zinc-Endopeptidase From The Crayfish Astacus Astacus
L. Structure Determination, Refinement, Molecular
Structure And Comparison With Thermolysin
pdb|1IAD|A Chain A, Refined 1.8 Angstroms X-Ray Crystal Structure Of Astacin,
A Zinc-Endopeptidase From The Crayfish Astacus Astacus
L. Structure Determination, Refinement, Molecular
Structure And Comparison To Thermolysin
pdb|1IAE|A Chain A, Crystal Structures, Spectroscopic Features, And Catalytic
Properties Of Cobalt(Ii), Copper(Ii), Nickel(Ii), And
Mercury(Ii) Derivatives Of The Zinc Endopeptidase
Astacin. A Correlation Of Structure And Proteolytic
Activity
pdb|1QJI|A Chain A, Structure Of Astacin With A Transition-State Analogue
Inhibitor
pdb|1QJJ|A Chain A, Structure Of Astacin With A Hydroxamic Acid Inhibitor
Length = 200
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 35 YDYGSIMHYSGIAFS-KDGVSKTIVPLYPGAEDT 67
Y Y SIMHY +FS + GV +TIVPL G + T
Sbjct: 141 YQYYSIMHYGKYSFSIQWGVLETIVPLQNGIDLT 174
>pdb|3LQ0|A Chain A, Zymogen Structure Of Crayfish Astacin Metallopeptidase
Length = 235
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 35 YDYGSIMHYSGIAFS-KDGVSKTIVPLYPGAEDT 67
Y Y SIMHY +FS + GV +TIVPL G + T
Sbjct: 175 YQYYSIMHYGKYSFSIQWGVLETIVPLQNGIDLT 208
>pdb|1FOK|A Chain A, Structure Of Restriction Endonuclease Foki Bound To Dna
Length = 576
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 15 GHEFNLERRPAGSVRTFSMPYDYGSIMH---YSG 45
G R+P G++ T P DYG I+ YSG
Sbjct: 437 GKHLGGSRKPDGAIYTVGSPIDYGVIVDTKAYSG 470
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 43 YSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDQ 79
YSG S++GV + ++PL G+ T+ + M + D
Sbjct: 268 YSGADVSREGVQRDLLPLVEGS--TVSTKHGMVKTDH 302
>pdb|2FOK|A Chain A, Structure Of Restriction Endonuclease Foki
pdb|2FOK|B Chain B, Structure Of Restriction Endonuclease Foki
Length = 579
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 15 GHEFNLERRPAGSVRTFSMPYDYGSIMH---YSG 45
G R+P G++ T P DYG I+ YSG
Sbjct: 440 GKHLGGSRKPDGAIYTVGSPIDYGVIVDTKAYSG 473
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 43 YSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDQ 79
YSG S++GV + ++PL G+ T+ + M + D
Sbjct: 134 YSGADVSREGVQRDLLPLVEGS--TVSTKHGMVKTDH 168
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,542,970
Number of Sequences: 62578
Number of extensions: 89619
Number of successful extensions: 172
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 164
Number of HSP's gapped (non-prelim): 12
length of query: 82
length of database: 14,973,337
effective HSP length: 51
effective length of query: 31
effective length of database: 11,781,859
effective search space: 365237629
effective search space used: 365237629
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)