Query psy9284
Match_columns 82
No_of_seqs 156 out of 916
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 23:32:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9284.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9284hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04281 ZnMc_BMP1_TLD Zinc-dep 100.0 9.5E-32 2.1E-36 182.3 6.1 80 2-81 111-192 (200)
2 cd04282 ZnMc_meprin Zinc-depen 100.0 1.3E-31 2.9E-36 184.8 5.7 80 2-81 144-223 (230)
3 cd04283 ZnMc_hatching_enzyme Z 100.0 5.6E-30 1.2E-34 171.6 5.4 75 2-81 101-175 (182)
4 cd04280 ZnMc_astacin_like Zinc 100.0 1.2E-29 2.7E-34 169.0 5.2 78 2-81 98-175 (180)
5 KOG3714|consensus 100.0 7.4E-30 1.6E-34 187.6 4.6 80 2-81 183-262 (411)
6 PF01400 Astacin: Astacin (Pep 99.9 1.3E-27 2.8E-32 160.5 4.4 80 2-81 103-182 (191)
7 cd04327 ZnMc_MMP_like_3 Zinc-d 99.6 7E-16 1.5E-20 103.8 1.5 49 18-81 143-192 (198)
8 cd04268 ZnMc_MMP_like Zinc-dep 98.1 2.9E-06 6.3E-11 54.7 2.7 39 29-81 122-160 (165)
9 smart00235 ZnMc Zinc-dependent 96.8 0.00087 1.9E-08 42.3 1.8 31 2-39 110-140 (140)
10 cd00203 ZnMc Zinc-dependent me 96.1 0.0052 1.1E-07 39.3 2.5 33 31-81 130-162 (167)
11 PF12253 CAF1A: Chromatin asse 37.7 37 0.00081 19.8 2.3 16 8-23 6-21 (77)
12 PF11097 DUF2883: Protein of u 31.2 17 0.00037 20.9 0.1 10 37-46 62-71 (75)
13 PF04930 FUN14: FUN14 family; 24.9 17 0.00037 21.8 -0.7 16 3-18 41-56 (100)
14 PF05880 Fiji_64_capsid: Fijiv 23.3 28 0.00061 27.3 0.1 21 30-50 213-240 (561)
15 COG1445 FrwB Phosphotransferas 20.8 81 0.0017 20.1 1.8 17 66-82 41-57 (122)
No 1
>cd04281 ZnMc_BMP1_TLD Zinc-dependent metalloprotease; BMP1/TLD-like subfamily. BMP1 (Bone morphogenetic protein 1) and TLD (tolloid)-like metalloproteases play vital roles in extracellular matrix formation, by cleaving precursor proteins such as enzymes, structural proteins, and proteins involved in the mineralization of the extracellular matrix. The drosophila protein tolloid and its Xenopus homologue xolloid cleave and inactivate Sog and chordin, respectively, which are inhibitors of Dpp (the Drosophila decapentaplegic gene product) and its homologue BMP4, involved in dorso-ventral patterning.
Probab=99.97 E-value=9.5e-32 Score=182.30 Aligned_cols=80 Identities=33% Similarity=0.537 Sum_probs=74.5
Q ss_pred CceEEEecCCCcccccccceecCCCCcccCCCCccccccCCCCCcccccCCCcceEEeCCCC--CccCCCcCCCCCHHHH
Q psy9284 2 SLTCQVLTENIGPGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPG--AEDTMGQRDAMSRVDQ 79 (82)
Q Consensus 2 D~yV~I~~~NI~~~~~~nF~k~~~~~~~~~g~pYDy~SvMHY~~~afs~~~~~~Ti~~~~~~--~~~~iGqr~~lS~~Di 79 (82)
|+||+|+|+||.|+.++||+|++...++++|+||||+|||||++++||+++..|||+|+.+. ++..||||.+||+.||
T Consensus 111 D~yV~I~~~nI~~~~~~nF~k~~~~~~~~~g~pYDy~SiMHY~~~aFs~~~~~~Ti~p~~~~~~~~~~iGqr~~lS~~Di 190 (200)
T cd04281 111 DDHVTIIRENIQPGQEYNFLKMEPEEVDSLGEPYDFDSIMHYARNTFSRGMFLDTILPKRDPNGVRPEIGQRTRLSEGDI 190 (200)
T ss_pred cceEEEeecccCcchhhhhhhcCccccccCCCccCCCccccCCCCccccCCCCCceEECCCcccccccccccCCCCHHHH
Confidence 89999999999999999999999988889999999999999999999999877999998763 4468999999999999
Q ss_pred hc
Q psy9284 80 KR 81 (82)
Q Consensus 80 ~k 81 (82)
+|
T Consensus 191 ~~ 192 (200)
T cd04281 191 IQ 192 (200)
T ss_pred HH
Confidence 86
No 2
>cd04282 ZnMc_meprin Zinc-dependent metalloprotease, meprin_like subfamily. Meprins are membrane-bound or secreted extracellular proteases, which cleave a variety of targets, including peptides such as parathyroid hormone, gastrin, and cholecystokinin, cytokines such as osteopontin, and proteins such as collagen IV, fibronectin, casein and gelatin. Meprins may also be able to release proteins from the cell surface. Closely related meprin alpha- and beta-subunits form homo- and hetero-oligomers; these complexes are found on epithelial cells of the intestine, for example, and are also expressed in certain cancer cells.
Probab=99.97 E-value=1.3e-31 Score=184.76 Aligned_cols=80 Identities=31% Similarity=0.497 Sum_probs=75.1
Q ss_pred CceEEEecCCCcccccccceecCCCCcccCCCCccccccCCCCCcccccCCCcceEEeCCCCCccCCCcCCCCCHHHHhc
Q psy9284 2 SLTCQVLTENIGPGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDQKR 81 (82)
Q Consensus 2 D~yV~I~~~NI~~~~~~nF~k~~~~~~~~~g~pYDy~SvMHY~~~afs~~~~~~Ti~~~~~~~~~~iGqr~~lS~~Di~k 81 (82)
|+||+|+|+||.++.++||+|+....+.++|+||||+|||||++++||+++..|||+|+++.++..||||.+||+.||+|
T Consensus 144 D~yV~I~~~nI~~~~~~nF~k~~~~~~~~~g~pYDy~SIMHY~~~aFs~~~~~pTi~~~~~~~~~~iGqr~~lS~~Di~~ 223 (230)
T cd04282 144 DDYVKIWWDQILSGREHNFNKYDDSFSTDLNTPYDYESVMHYSPFSFNKGASEPTITTKIPEFNDIIGQRLDFSDIDLER 223 (230)
T ss_pred ccceEEeecccCchHHHHhhhcCccccccCCCCCCcccccccCCCccccCCCCceeeecCCcccccccccCCCCHHHHHH
Confidence 89999999999999999999999988889999999999999999999999445999999987766899999999999986
No 3
>cd04283 ZnMc_hatching_enzyme Zinc-dependent metalloprotease, hatching enzyme-like subfamily. Hatching enzymes are secreted by teleost embryos to digest the egg envelope or chorion. In some teleosts, the hatching enzyme may be a system consisting of two evolutionary related metalloproteases, high choriolytic enzyme and low choriolytic enzyme (HCE and LCE), which may have different substrate specificities and cooperatively digest the chorion.
Probab=99.96 E-value=5.6e-30 Score=171.59 Aligned_cols=75 Identities=37% Similarity=0.614 Sum_probs=69.1
Q ss_pred CceEEEecCCCcccccccceecCCCCcccCCCCccccccCCCCCcccccCCCcceEEeCCCCCccCCCcCCCCCHHHHhc
Q psy9284 2 SLTCQVLTENIGPGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDQKR 81 (82)
Q Consensus 2 D~yV~I~~~NI~~~~~~nF~k~~~~~~~~~g~pYDy~SvMHY~~~afs~~~~~~Ti~~~~~~~~~~iGqr~~lS~~Di~k 81 (82)
|+||+|+|+||.|+.++||+|+.. .++|+||||+|||||++++||++++ |||+|+++.. ..||||.+||+.||++
T Consensus 101 D~yV~I~~~nI~~~~~~nF~~~~~---~~~~~pYDy~SiMHY~~~afs~~g~-~Ti~~~~~~~-~~iGqr~~lS~~Di~~ 175 (182)
T cd04283 101 DKYVRINWENIIPDQLYNFDKQDT---NNLGTPYDYSSVMHYGRYAFSINGK-PTIVPIPDPN-VPIGQRQGMSNLDILR 175 (182)
T ss_pred CceEEEehhhcCchHHhhhhhccc---cccCCcccceeeeccCCcccccCCC-CeEEECCccc-ccccCCCCCCHHHHHH
Confidence 899999999999999999999975 4689999999999999999999988 9999998654 3899999999999986
No 4
>cd04280 ZnMc_astacin_like Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the active protease domain, which is consequently always found at the N-terminus in multi-domain architectures. This family includes: astacin, a digestive enzyme from Crayfish; meprin, a multiple domain membrane component that is constructed from a homologous alpha and beta chain, proteins involved in (bone) morphogenesis, tolloid from drosophila, and the sea urchin SPAN protein, which may also play a role in development.
Probab=99.96 E-value=1.2e-29 Score=168.99 Aligned_cols=78 Identities=45% Similarity=0.755 Sum_probs=73.5
Q ss_pred CceEEEecCCCcccccccceecCCCCcccCCCCccccccCCCCCcccccCCCcceEEeCCCCCccCCCcCCCCCHHHHhc
Q psy9284 2 SLTCQVLTENIGPGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDQKR 81 (82)
Q Consensus 2 D~yV~I~~~NI~~~~~~nF~k~~~~~~~~~g~pYDy~SvMHY~~~afs~~~~~~Ti~~~~~~~~~~iGqr~~lS~~Di~k 81 (82)
|+||+|+|+||.++.+.||+|++...+.++|+||||+|||||++++||++++ |||+|+++... .+|||.+||+.|+++
T Consensus 98 D~yv~i~~~ni~~~~~~nf~~~~~~~~~~~~~~YDy~SiMhY~~~~fs~~~~-~ti~~~~~~~~-~~g~~~~~S~~D~~~ 175 (180)
T cd04280 98 DDYVTINWENIQPGYEHNFDKYSPDTVTTYGVPYDYGSVMHYGPTAFSKNGK-PTIVPKDPGYQ-IIGQREGLSFLDIKK 175 (180)
T ss_pred CCeEEEeecccChhHHHHhhhcCcccccccCCcCCcceEeccCCcccccCCC-ceEEECCchhh-cccCCCCCCHHHHHH
Confidence 8999999999999999999999998888899999999999999999999977 99999998775 389999999999986
No 5
>KOG3714|consensus
Probab=99.96 E-value=7.4e-30 Score=187.57 Aligned_cols=80 Identities=44% Similarity=0.748 Sum_probs=76.7
Q ss_pred CceEEEecCCCcccccccceecCCCCcccCCCCccccccCCCCCcccccCCCcceEEeCCCCCccCCCcCCCCCHHHHhc
Q psy9284 2 SLTCQVLTENIGPGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDQKR 81 (82)
Q Consensus 2 D~yV~I~~~NI~~~~~~nF~k~~~~~~~~~g~pYDy~SvMHY~~~afs~~~~~~Ti~~~~~~~~~~iGqr~~lS~~Di~k 81 (82)
|+||+|+|+||.++.++||+|++...+.++|+||||+|||||++++||+++..|||+|+....+.+||||.+||+.|+.|
T Consensus 183 D~yV~I~~~ni~~~~~~nF~k~~~~~~~~~~~pYDygSvMHY~~~afs~~~~~~ti~~~~~~~~~~mGqr~~~S~~Di~~ 262 (411)
T KOG3714|consen 183 DNYVSINWDNIDPGQEYNFEKYSPDEVTTYGVPYDYGSVMHYAPYAFSKNGSLPTIVPKDNGFQNTMGQRERLSFYDIRK 262 (411)
T ss_pred cCceEEeeccCChhhhhhhhhcChhhhhccCCcccCCcccccCCcccCcCCCCCceecccccccccccccCcCCHHHHHH
Confidence 89999999999999999999999988899999999999999999999999998899999988766899999999999986
No 6
>PF01400 Astacin: Astacin (Peptidase family M12A) This Prosite motif covers only the active site.; InterPro: IPR001506 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12A (astacin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The astacin () family of metalloendopeptidases encompasses a range of proteins found in hydra to humans, in mature and developmental systems []. Their functions include activation of growth factors, degradation of polypeptides, and processing of extracellular proteins []. The proteins are synthesised with N-terminal signal and pro-enzyme sequences, and many contain multiple domains C-terminal to the protease domain. They are either secreted from cells, or are associated with the plasma membrane. The astacin molecule adopts a kidney shape, with a deep active-site cleft between its N- and C-terminal domains []. The zinc ion, which lies at the bottom of the cleft, exhibits a unique penta-coordinated mode of binding, involving 3 histidine residues, a tyrosine and a water molecule (which is also bound to the carboxylate side chain of Glu93) []. The N-terminal domain comprises 2 alpha-helices and a 5-stranded beta-sheet. The overall topology of this domain is shared by the archetypal zinc-endopeptidase thermolysin. Astacin protease domains also share common features with serralysins, matrix metalloendopeptidases, and snake venom proteases; they cleave peptide bonds in polypeptides such as insulin B chain and bradykinin, and in proteins such as casein and gelatin; and they have arylamidase activity [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3LQB_A 3EDH_A 3EDG_A 3EDI_A 1IAE_A 1IAB_A 1IAA_A 1AST_A 1IAC_A 1QJJ_A ....
Probab=99.94 E-value=1.3e-27 Score=160.54 Aligned_cols=80 Identities=43% Similarity=0.692 Sum_probs=57.5
Q ss_pred CceEEEecCCCcccccccceecCCCCcccCCCCccccccCCCCCcccccCCCcceEEeCCCCCccCCCcCCCCCHHHHhc
Q psy9284 2 SLTCQVLTENIGPGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDQKR 81 (82)
Q Consensus 2 D~yV~I~~~NI~~~~~~nF~k~~~~~~~~~g~pYDy~SvMHY~~~afs~~~~~~Ti~~~~~~~~~~iGqr~~lS~~Di~k 81 (82)
|+||+|+|+||.++.+.||.+.+...+.++++||||+|||||++.+|++++..|||+|+++.....||||.+||+.|+++
T Consensus 103 d~yi~i~~~~i~~~~~~~f~~~~~~~~~~~~~pYD~~SIMHY~~~~~s~~~~~~ti~~~~~~~~~~iG~~~~lS~~D~~~ 182 (191)
T PF01400_consen 103 DNYITINWDNIQPGYKHNFDKYPPSEWSTYGSPYDYGSIMHYSSYAFSKNGSQPTITPKDPKYQETIGQRNRLSFTDIKQ 182 (191)
T ss_dssp GGTEEE-GGGB-TTSGGGG---SGGGBE-TTS---TT-TT---TTTTBSSTTS-SEEESSTTCTS-GGG-SS--HHHHHH
T ss_pred ccEEEEehhcchhhhhhhhhccccccccccCCCcCccCeecccCcccccCCCCCeEEecCCCCcccccccCCCCHHHHHH
Confidence 89999999999999999999999878888999999999999999999999966999999987667999999999999986
No 7
>cd04327 ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MMP_like sub-family 3. A group of bacterial and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=99.56 E-value=7e-16 Score=103.82 Aligned_cols=49 Identities=27% Similarity=0.342 Sum_probs=42.5
Q ss_pred ccceecCCCCcccCCCCccccccCCCC-CcccccCCCcceEEeCCCCCccCCCcCCCCCHHHHhc
Q psy9284 18 FNLERRPAGSVRTFSMPYDYGSIMHYS-GIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDQKR 81 (82)
Q Consensus 18 ~nF~k~~~~~~~~~g~pYDy~SvMHY~-~~afs~~~~~~Ti~~~~~~~~~~iGqr~~lS~~Di~k 81 (82)
.+|.|+... ..+|+||||+|||||+ +.+|++++. +| |++.+||..|+++
T Consensus 143 ~~f~~~~~~--~~~~~~yD~~SIMHY~~~~~~t~~g~-~t------------~~~~~lS~~D~~~ 192 (198)
T cd04327 143 NVFAKLDDG--DVAYSPYDPDSIMHYPFPGSLTLDGE-EV------------PPNRTLSDKDKAF 192 (198)
T ss_pred hhhhccccc--cccCCCCCcHHHHcCCCcHHhhcCCc-cc------------CCCCCCCHHHHHH
Confidence 679998753 4689999999999999 899999887 55 6889999999986
No 8
>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.
Probab=98.07 E-value=2.9e-06 Score=54.66 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=32.9
Q ss_pred ccCCCCccccccCCCCCcccccCCCcceEEeCCCCCccCCCcCCCCCHHHHhc
Q psy9284 29 RTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDQKR 81 (82)
Q Consensus 29 ~~~g~pYDy~SvMHY~~~afs~~~~~~Ti~~~~~~~~~~iGqr~~lS~~Di~k 81 (82)
..++.+||+.|||||....|+.+ ..+|++.+||..||+.
T Consensus 122 ~~~~~~~~~~SvM~y~~~~~~~~--------------~~~~~~~~~~~~Di~a 160 (165)
T cd04268 122 DLLAEKGDTSSVMDYAPSNFSIQ--------------LGDGQKYTIGPYDIAA 160 (165)
T ss_pred hhhccCCCCcccCCCCccccccc--------------cccccCCCCCHHHHHH
Confidence 46788999999999999999875 1568889999999974
No 9
>smart00235 ZnMc Zinc-dependent metalloprotease. Neutral zinc metallopeptidases. This alignment represents a subset of known subfamilies. Highest similarity occurs in the HExxH zinc-binding site/ active site.
Probab=96.75 E-value=0.00087 Score=42.25 Aligned_cols=31 Identities=29% Similarity=0.466 Sum_probs=25.5
Q ss_pred CceEEEecCCCcccccccceecCCCCcccCCCCccccc
Q psy9284 2 SLTCQVLTENIGPGHEFNLERRPAGSVRTFSMPYDYGS 39 (82)
Q Consensus 2 D~yV~I~~~NI~~~~~~nF~k~~~~~~~~~g~pYDy~S 39 (82)
|+||.|+|+|+ ..+|.+... +.+|+||||+|
T Consensus 110 d~~~~~~~~~~----~~~~~~~~~---~~~~~~~~yg~ 140 (140)
T smart00235 110 DNYMYINYTNI----TRNFDLSND---DSLGIPYDYGS 140 (140)
T ss_pred cCeEEEehhhh----hhccccccc---cCCCchhccCc
Confidence 78999999999 557777643 67889999987
No 10
>cd00203 ZnMc Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which are involved in vertebrate development and disease.
Probab=96.07 E-value=0.0052 Score=39.31 Aligned_cols=33 Identities=36% Similarity=0.463 Sum_probs=25.3
Q ss_pred CCCCccccccCCCCCcccccCCCcceEEeCCCCCccCCCcCCCCCHHHHhc
Q psy9284 31 FSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDQKR 81 (82)
Q Consensus 31 ~g~pYDy~SvMHY~~~afs~~~~~~Ti~~~~~~~~~~iGqr~~lS~~Di~k 81 (82)
.+.+|++.|||||....|+ ++++..||..|+.+
T Consensus 130 ~~~~~~~~siM~y~~~~~~------------------~~~~~~fS~~d~~~ 162 (167)
T cd00203 130 NAEDDDYYSVMSYTKGSFS------------------DGQRKDFSQCDIDQ 162 (167)
T ss_pred cCCCCCCCeEeccCccccC------------------cccCCCcCHHHHHH
Confidence 5669999999999876553 56777788888654
No 11
>PF12253 CAF1A: Chromatin assembly factor 1 subunit A; InterPro: IPR022043 The CAF-1 or chromatin assembly factor-1 consists of three subunits, and this is the first, or A []. The A domain is uniquely required for the progression of S phase in mouse cells [], independent of its ability to promote histone deposition [] but dependent on its ability to interact with HP1 - heterochromatin protein 1-rich heterochromatin domains next to centromeres that are crucial for chromosome segregation during mitosis. This HP1-CAF-1 interaction module functions as a built-in replication control for heterochromatin, which, like a control barrier, has an impact on S-phase progression in addition to DNA-based checkpoints [].
Probab=37.71 E-value=37 Score=19.80 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=11.8
Q ss_pred ecCCCcccccccceec
Q psy9284 8 LTENIGPGHEFNLERR 23 (82)
Q Consensus 8 ~~~NI~~~~~~nF~k~ 23 (82)
+.+|++|.+..-+.|.
T Consensus 6 F~e~~RPpY~GT~~k~ 21 (77)
T PF12253_consen 6 FHENVRPPYYGTWTKK 21 (77)
T ss_pred eCCCCCCCEeeEEccC
Confidence 3589999887776664
No 12
>PF11097 DUF2883: Protein of unknown function (DUF2883); InterPro: IPR020112 This group of proteins currently have no known function and are found primarily in the T4-like bacteriophages.
Probab=31.24 E-value=17 Score=20.86 Aligned_cols=10 Identities=30% Similarity=0.441 Sum_probs=7.5
Q ss_pred ccccCCCCCc
Q psy9284 37 YGSIMHYSGI 46 (82)
Q Consensus 37 y~SvMHY~~~ 46 (82)
-+|||||-+.
T Consensus 62 ~~~~mhykp~ 71 (75)
T PF11097_consen 62 RAFVMHYKPR 71 (75)
T ss_pred ccceeecccc
Confidence 3789999753
No 13
>PF04930 FUN14: FUN14 family; InterPro: IPR007014 This is a family of short proteins found in eukaryotes and some archaea. Although the function of these proteins is not known they may contain transmembrane helices.
Probab=24.85 E-value=17 Score=21.76 Aligned_cols=16 Identities=6% Similarity=-0.166 Sum_probs=12.4
Q ss_pred ceEEEecCCCcccccc
Q psy9284 3 LTCQVLTENIGPGHEF 18 (82)
Q Consensus 3 ~yV~I~~~NI~~~~~~ 18 (82)
-||+|||+.+......
T Consensus 41 G~i~Vnw~kl~~~~~~ 56 (100)
T PF04930_consen 41 GYIKVNWDKLEKDVKK 56 (100)
T ss_pred CeEEECHHHHHHHHHH
Confidence 4899999998775544
No 14
>PF05880 Fiji_64_capsid: Fijivirus 64 kDa capsid protein; InterPro: IPR008618 This family consists of several Fijivirus 64 kDa capsid proteins.
Probab=23.25 E-value=28 Score=27.30 Aligned_cols=21 Identities=33% Similarity=0.602 Sum_probs=16.4
Q ss_pred cCCCCccc------cccCCCCCcc-ccc
Q psy9284 30 TFSMPYDY------GSIMHYSGIA-FSK 50 (82)
Q Consensus 30 ~~g~pYDy------~SvMHY~~~a-fs~ 50 (82)
.++..||| .||||||.+. |+.
T Consensus 213 r~~gGyd~n~~ssttdit~yG~y~~~s~ 240 (561)
T PF05880_consen 213 RIDGGYDFNCPSSTTDITEYGGYDQFSI 240 (561)
T ss_pred EeccceeccCccccchhhhhCCHhHHHH
Confidence 35667998 8999999885 664
No 15
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=20.83 E-value=81 Score=20.11 Aligned_cols=17 Identities=12% Similarity=0.259 Sum_probs=14.5
Q ss_pred cCCCcCCCCCHHHHhcC
Q psy9284 66 DTMGQRDAMSRVDQKRG 82 (82)
Q Consensus 66 ~~iGqr~~lS~~Di~k~ 82 (82)
..+|-.+.||..||.+|
T Consensus 41 Gs~G~eN~LT~edI~~A 57 (122)
T COG1445 41 GAVGIENRLTAEDIAAA 57 (122)
T ss_pred CcccccCcCCHHHHHhC
Confidence 36888899999999876
Done!