RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9284
(82 letters)
>gnl|CDD|239807 cd04280, ZnMc_astacin_like, Zinc-dependent metalloprotease,
astacin_like subfamily or peptidase family M12A, a group
of zinc-dependent proteolytic enzymes with a HExxH
zinc-binding site/active site. Members of this family
may have an amino terminal propeptide, which is cleaved
to yield the active protease domain, which is
consequently always found at the N-terminus in
multi-domain architectures. This family includes:
astacin, a digestive enzyme from Crayfish; meprin, a
multiple domain membrane component that is constructed
from a homologous alpha and beta chain, proteins
involved in (bone) morphogenesis, tolloid from
drosophila, and the sea urchin SPAN protein, which may
also play a role in development.
Length = 180
Score = 89.9 bits (224), Expect = 2e-24
Identities = 35/76 (46%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Query: 6 QVLTENIGPGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAE 65
+ ENI PG+E N ++ +V T+ +PYDYGS+MHY AFSK+G TIVP PG +
Sbjct: 102 TINWENIQPGYEHNFDKYSPDTVTTYGVPYDYGSVMHYGPTAFSKNG-KPTIVPKDPGYQ 160
Query: 66 DTMGQRDAMSRVDQKR 81
+GQR+ +S +D K+
Sbjct: 161 I-IGQREGLSFLDIKK 175
>gnl|CDD|201773 pfam01400, Astacin, Astacin (Peptidase family M12A). The members
of this family are enzymes that cleave peptides. These
proteases require zinc for catalysis. Members of this
family contain two conserved disulphide bridges, these
are joined 1-4 and 2-3. Members of this family have an
amino terminal propeptide which is cleaved to give the
active protease domain. All other linked domains are
found to the carboxyl terminus of this domain. This
family includes: Astacin, a digestive enzyme from
Crayfish. Meprin, a multiple domain membrane component
that is constructed from a homologous alpha and beta
chain. Proteins involved in morphogenesis such as human
bone morphogenetic protein 1, and Tolloid from
Drosophila melanogaster.
Length = 191
Score = 88.5 bits (220), Expect = 7e-24
Identities = 34/72 (47%), Positives = 43/72 (59%)
Query: 7 VLTENIGPGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAED 66
+ +NI PG E N E+ V + +PYDYGSIMHY AFSK+G TIVP +
Sbjct: 108 INWQNIDPGQEGNFEKYDPDEVDSLGVPYDYGSIMHYGPYAFSKNGYLPTIVPKDNDYQA 167
Query: 67 TMGQRDAMSRVD 78
T+GQRD +S D
Sbjct: 168 TIGQRDKLSFGD 179
>gnl|CDD|239810 cd04283, ZnMc_hatching_enzyme, Zinc-dependent metalloprotease,
hatching enzyme-like subfamily. Hatching enzymes are
secreted by teleost embryos to digest the egg envelope
or chorion. In some teleosts, the hatching enzyme may be
a system consisting of two evolutionary related
metalloproteases, high choriolytic enzyme and low
choriolytic enzyme (HCE and LCE), which may have
different substrate specificities and cooperatively
digest the chorion.
Length = 182
Score = 63.4 bits (155), Expect = 3e-14
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 6 QVLTENIGPGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAE 65
++ ENI P +N +++ ++ T PYDY S+MHY AFS +G TIVP+ P
Sbjct: 105 RINWENIIPDQLYNFDKQDTNNLGT---PYDYSSVMHYGRYAFSING-KPTIVPI-PDPN 159
Query: 66 DTMGQRDAMSRVDQKR 81
+GQR MS +D R
Sbjct: 160 VPIGQRQGMSNLDILR 175
>gnl|CDD|239808 cd04281, ZnMc_BMP1_TLD, Zinc-dependent metalloprotease;
BMP1/TLD-like subfamily. BMP1 (Bone morphogenetic
protein 1) and TLD (tolloid)-like metalloproteases play
vital roles in extracellular matrix formation, by
cleaving precursor proteins such as enzymes, structural
proteins, and proteins involved in the mineralization of
the extracellular matrix. The drosophila protein tolloid
and its Xenopus homologue xolloid cleave and inactivate
Sog and chordin, respectively, which are inhibitors of
Dpp (the Drosophila decapentaplegic gene product) and
its homologue BMP4, involved in dorso-ventral
patterning.
Length = 200
Score = 60.9 bits (148), Expect = 3e-13
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 6 QVLTENIGPGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLY--PG 63
++ ENI PG E+N + V + PYD+ SIMHY+ FS+ TI+P G
Sbjct: 115 TIIRENIQPGQEYNFLKMEPEEVDSLGEPYDFDSIMHYARNTFSRGMFLDTILPKRDPNG 174
Query: 64 AEDTMGQRDAMSRVD 78
+GQR +S D
Sbjct: 175 VRPEIGQRTRLSEGD 189
>gnl|CDD|239809 cd04282, ZnMc_meprin, Zinc-dependent metalloprotease, meprin_like
subfamily. Meprins are membrane-bound or secreted
extracellular proteases, which cleave a variety of
targets, including peptides such as parathyroid hormone,
gastrin, and cholecystokinin, cytokines such as
osteopontin, and proteins such as collagen IV,
fibronectin, casein and gelatin. Meprins may also be
able to release proteins from the cell surface. Closely
related meprin alpha- and beta-subunits form homo- and
hetero-oligomers; these complexes are found on
epithelial cells of the intestine, for example, and are
also expressed in certain cancer cells.
Length = 230
Score = 52.1 bits (125), Expect = 1e-09
Identities = 25/70 (35%), Positives = 33/70 (47%)
Query: 12 IGPGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQR 71
I G E N + + PYDY S+MHYS +F+K TI P D +GQR
Sbjct: 154 ILSGREHNFNKYDDSFSTDLNTPYDYESVMHYSPFSFNKGASEPTITTKIPEFNDIIGQR 213
Query: 72 DAMSRVDQKR 81
S +D +R
Sbjct: 214 LDFSDIDLER 223
>gnl|CDD|239796 cd04268, ZnMc_MMP_like, Zinc-dependent metalloprotease, MMP_like
subfamily. This group contains matrix metalloproteinases
(MMPs), serralysins, and the astacin_like family of
proteases.
Length = 165
Score = 30.2 bits (68), Expect = 0.077
Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 9/64 (14%)
Query: 11 NIGPGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQ 70
+G H F R +V + D S+M Y+ FS G + T+G
Sbjct: 105 ALGLRHNFAASDR-DDNVDLLAEKGDTSSVMDYAPSNFSIQLG--------DGQKYTIGP 155
Query: 71 RDAM 74
D
Sbjct: 156 YDIA 159
>gnl|CDD|233618 TIGR01887, dipeptidaselike, dipeptidase, putative. This model
represents a clade of probable zinc dipeptidases,
closely related to the characterized non-specific
dipeptidase, PepV. Many enzymes in this clade have been
given names including the terms "Xaa-His" and
"carnosinase" due to the early mis-characterization of
the Lactobacillus delbrueckii PepV enzyme. These names
are likely too specific.
Length = 447
Score = 29.3 bits (66), Expect = 0.19
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 55 KTIV---PLYPGAEDTMGQRDAMSRVDQ 79
V L+PG EDTM Q + +D
Sbjct: 408 PNGVAFGALFPGEEDTMHQANEYIMIDD 435
>gnl|CDD|238124 cd00203, ZnMc, Zinc-dependent metalloprotease. This super-family of
metalloproteases contains two major branches, the
astacin-like proteases and the
adamalysin/reprolysin-like proteases. Both branches have
wide phylogenetic distribution, and contain
sub-families, which are involved in vertebrate
development and disease.
Length = 167
Score = 26.3 bits (58), Expect = 1.5
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 11 NIGPGHEFNLERR---PAGSVRTFSMPYDYGSIMHY 43
+G H+ + + R P + DY S+M Y
Sbjct: 107 ALGFYHDHDRKDRDDYPTIDDTLNAEDDDYYSVMSY 142
>gnl|CDD|182098 PRK09828, PRK09828, putative fimbrial outer membrane usher protein;
Provisional.
Length = 865
Score = 26.2 bits (58), Expect = 2.3
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 29 RTFSMPYDYGSIMHYSGIAFSKDGVSKT---IVPLYPGAE 65
R +S+ D G ++H G+ FS D S + + PGA+
Sbjct: 670 RQYSLSTDGGFVLHSGGLTFSNDSFSDSDTLALVKAPGAK 709
>gnl|CDD|180965 PRK07408, PRK07408, RNA polymerase sigma factor SigF; Reviewed.
Length = 256
Score = 25.7 bits (57), Expect = 3.3
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 18 FNLERRPAGSVRTFSMPYDYGSIMHY 43
F+ + A S +F++PY G I HY
Sbjct: 71 FDPSKGHAFS--SFAIPYIRGEIQHY 94
>gnl|CDD|235988 PRK07318, PRK07318, dipeptidase PepV; Reviewed.
Length = 466
Score = 25.2 bits (56), Expect = 4.0
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 59 PLYPGAEDTMGQRDAMSRVDQ 79
++PG+EDTM Q + +D
Sbjct: 429 AMFPGSEDTMHQANEYIEIDD 449
>gnl|CDD|163426 TIGR03714, secA2, accessory Sec system translocase SecA2. Members
of this protein family are homologous to SecA and part
of the accessory Sec system. This system, including both
five core proteins for export and a variable number of
proteins for glycosylation, operates in certain
Gram-positive pathogens for the maturation and delivery
of serine-rich glycoproteins such as the cell surface
glycoprotein GspB in Streptococcus gordonii [Protein
fate, Protein and peptide secretion and trafficking].
Length = 762
Score = 25.0 bits (55), Expect = 5.3
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 18/58 (31%)
Query: 34 PYD---YGSI-MHYSGIAFSKDGVSKTIV---PLY------PGA-----EDTMGQRDA 73
PYD G+I +H IA K G KT+ PLY GA D + +RDA
Sbjct: 71 PYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDA 128
>gnl|CDD|239819 cd04327, ZnMc_MMP_like_3, Zinc-dependent metalloprotease; MMP_like
sub-family 3. A group of bacterial and fungal
metalloproteinase domains similar to matrix
metalloproteinases and astacin.
Length = 198
Score = 24.3 bits (53), Expect = 8.5
Identities = 8/11 (72%), Positives = 8/11 (72%)
Query: 34 PYDYGSIMHYS 44
PYD SIMHY
Sbjct: 157 PYDPDSIMHYP 167
>gnl|CDD|180055 PRK05398, PRK05398, formyl-coenzyme A transferase; Provisional.
Length = 416
Score = 24.2 bits (53), Expect = 8.9
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 4 TCQVLTENIGPG 15
VL EN GPG
Sbjct: 89 EADVLVENFGPG 100
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.399
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,044,534
Number of extensions: 310186
Number of successful extensions: 216
Number of sequences better than 10.0: 1
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 14
Length of query: 82
Length of database: 10,937,602
Length adjustment: 51
Effective length of query: 31
Effective length of database: 8,675,548
Effective search space: 268941988
Effective search space used: 268941988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.1 bits)