RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy9284
         (82 letters)



>3edh_A Bone morphogenetic protein 1; vicinal disulfide, alternative
           splicing, calcium, chondrogenesis, cleavage on PAIR of
           basic residues, cytokine; 1.25A {Homo sapiens} PDB:
           3edg_A 3edi_A
          Length = 201

 Score = 89.8 bits (223), Expect = 2e-24
 Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 6   QVLTENIGPGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYP--G 63
            ++ ENI PG E+N  +     V +    YD+ SIMHY+   FS+     TIVP Y   G
Sbjct: 115 SIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNG 174

Query: 64  AEDTMGQRDAMSRVDQKR 81
            +  +GQR  +S+ D  +
Sbjct: 175 VKPPIGQRTRLSKGDIAQ 192


>3lqb_A Hatching enzyme, LOC792177 protein; hydrolase, metalloprotease,
           astacin, metal- protease; 1.10A {Danio rerio}
          Length = 199

 Score = 82.1 bits (203), Expect = 1e-21
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 4/76 (5%)

Query: 6   QVLTENIGPGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAE 65
           ++   NI PG  +N  ++        + PYDYGS+MHY   AF+     +TI P+ P   
Sbjct: 121 RINWNNISPGMAYNFLKQ---KTNNQNTPYDYGSLMHYGKTAFAIQPGLETITPI-PDEN 176

Query: 66  DTMGQRDAMSRVDQKR 81
             +GQR  +S++D  R
Sbjct: 177 VQIGQRQGLSKIDILR 192


>3lq0_A Proastacin; metallopeptidase, zymogen activation, proenzyme,
           protease, Z disulfide bond, hydrolase, metal-binding,
           metalloprotease,; 1.45A {Astacus astacus} PDB: 1iab_A
           1iaa_A 1ast_A 1iac_A 1iad_A 1iae_A 1qji_A* 1qjj_A
          Length = 235

 Score = 82.6 bits (204), Expect = 3e-21
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 6   QVLTENIGPGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDG-VSKTIVPLYPGA 64
            +  +N+ P    N +             Y Y SIMHY   +FS    V +TIVPL  G 
Sbjct: 148 TINYQNVDPSMTSNFDIDTYSR--YVGEDYQYYSIMHYGKYSFSIQWGVLETIVPLQNGI 205

Query: 65  EDT-MGQRDAMSRVDQKR 81
           + T    +  M + D  +
Sbjct: 206 DLTDPYDKAHMLQTDANQ 223


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
          programmed cell death; HET: DTP; 6.90A {Drosophila
          melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 26.4 bits (57), Expect = 1.2
 Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 14/69 (20%)

Query: 16 HEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKD----GVSKTIVPLYPGAE--DTMG 69
          H  + E        T    Y Y  I+     AF  +     V      +    E    + 
Sbjct: 5  HHMDFE--------TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIM 56

Query: 70 QRDAMSRVD 78
           +DA+S   
Sbjct: 57 SKDAVSGTL 65


>3qc2_A Glycosyl hydrolase; 5-bladed beta propeller fold, structural
           genomics, joint CEN structural genomics, JCSG, protein
           structure initiative; HET: PGE; 2.30A {Bacteroides
           ovatus}
          Length = 364

 Score = 25.1 bits (54), Expect = 3.5
 Identities = 9/48 (18%), Positives = 10/48 (20%), Gaps = 3/48 (6%)

Query: 34  PYDYGSIMHYSGIAFSKDGVSKTIVP---LYPGAEDTMGQRDAMSRVD 78
               G      G A S DG           YP  +            D
Sbjct: 76  GVGIGHRTSRLGYATSTDGTHFQREKTPVFYPDNDSQKELEWPGGCED 123


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0513    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,217,480
Number of extensions: 59924
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 5
Length of query: 82
Length of database: 6,701,793
Length adjustment: 51
Effective length of query: 31
Effective length of database: 5,277,822
Effective search space: 163612482
Effective search space used: 163612482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.9 bits)