RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9284
         (82 letters)



>d1asta_ d.92.1.8 (A:) Astacin {European fresh water crayfish
           (Astacus astacus) [TaxId: 6715]}
          Length = 200

 Score = 56.7 bits (136), Expect = 4e-12
 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 4/79 (5%)

Query: 5   CQVLTENIGPGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKD-GVSKTIVPLYPG 63
             +  +N+ P    N +       R     Y Y SIMHY   +FS   GV +TIVPL  G
Sbjct: 113 VTINYQNVDPSMTSNFDIDT--YSRYVGEDYQYYSIMHYGKYSFSIQWGVLETIVPLQNG 170

Query: 64  AEDTM-GQRDAMSRVDQKR 81
            + T    +  M + D  +
Sbjct: 171 IDLTDPYDKAHMLQTDANQ 189


>d1bqqm_ d.92.1.11 (M:) Membrane-type matrix metalloproteinase
           (CDMT1-MMP) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 174

 Score = 29.6 bits (65), Expect = 0.025
 Identities = 7/42 (16%), Positives = 11/42 (26%)

Query: 4   TCQVLTENIGPGHEFNLERRPAGSVRTFSMPYDYGSIMHYSG 45
              V  E++     F +     G         D  +IM    
Sbjct: 107 PWTVRNEDLNGNDIFLVAVHELGHALGLEHSSDPSAIMAPFY 148


>d1ly2a2 g.18.1.1 (A:67-129) Complement receptor 2, cr2 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 63

 Score = 21.8 bits (46), Expect = 9.3
 Identities = 6/21 (28%), Positives = 10/21 (47%)

Query: 24 PAGSVRTFSMPYDYGSIMHYS 44
          P G     S PY +G  + ++
Sbjct: 11 PGGYKIRGSTPYRHGDSVTFA 31


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0450    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 289,591
Number of extensions: 11050
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 4
Length of query: 82
Length of database: 2,407,596
Length adjustment: 48
Effective length of query: 34
Effective length of database: 1,748,556
Effective search space: 59450904
Effective search space used: 59450904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.6 bits)