BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy929
(483 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 118 bits (295), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 121/201 (60%), Gaps = 18/201 (8%)
Query: 92 CIAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGK-WNFGFMMCNLWVSFD 150
C+AV R L+ NYL+VSLAV+DL VA LVMP + EV+G WNF + C+++V+ D
Sbjct: 60 CMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLD 119
Query: 151 VLSCTASILNLCMISVDRYYAITKPLEY--GVKRTP-KRMILCVVFVWLGAACISLPPLI 207
V+ CTASI NLC IS+DRY A+ P+ Y G ++ +R+ L + VW+ A +S P +
Sbjct: 120 VMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCP--L 177
Query: 208 VLGNDYREDNGVSFCSVCQNYGYQIYATLGSFYIPLTVMITVYYKIFCAARKIVAEEKRA 267
+ G + D V CS+ N + IY+++ SFY+P V + VY +I+ +V +++R
Sbjct: 178 LFGFNTTGDPTV--CSI-SNPDFVIYSSVVSFYLPFGVTVLVYARIY-----VVLKQRRR 229
Query: 268 QSHIIM----EHCYLQIHNNS 284
++ M E L+I+ ++
Sbjct: 230 KNIFEMLRIDEGLRLKIYKDT 250
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 105/198 (53%), Gaps = 14/198 (7%)
Query: 94 AVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLS 153
A+ ++L+ N + SLA +DL V +LV+P V G W +G +C LW S DVL
Sbjct: 35 AIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLC 94
Query: 154 CTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDY 213
TASI LC+I++DRY AIT P Y T R + + VW +A +S P+++ + +
Sbjct: 95 VTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMM--HWW 152
Query: 214 REDNGVSF--------CSVCQNYGYQIYATLGSFYIPLTVMITVYYKIFCAA----RKIV 261
R+++ + C N Y I +++ SFYIPL +MI V +++ A RKI
Sbjct: 153 RDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIRKID 212
Query: 262 AEEKRAQSHIIMEHCYLQ 279
KR + ++ EH L+
Sbjct: 213 RASKRKRVMLMREHKALK 230
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 106/200 (53%), Gaps = 16/200 (8%)
Query: 94 AVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLS 153
A+ ++L+ N + SLA +DL V +LV+P V G W +G +C LW S DVL
Sbjct: 35 AIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLC 94
Query: 154 CTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDY 213
TASI LC+I++DRY AIT P Y T R + + VW +A +S P+++ + +
Sbjct: 95 VTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMM--HWW 152
Query: 214 REDNGVSF--------CSVCQNYGYQIYATLGSFYIPLTVMITVYYKIFCAA----RKIV 261
R+++ + C N Y I +++ SFYIPL +MI V +++ A RKI
Sbjct: 153 RDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIRKID 212
Query: 262 AEEKRAQSHIIM--EHCYLQ 279
KR S +++ EH L+
Sbjct: 213 RASKRKTSRVMLMREHKALK 232
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 98/185 (52%), Gaps = 10/185 (5%)
Query: 94 AVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLS 153
A+ +L+ NY + SLA +DL + + V+P + ++ W FG C W S DVL
Sbjct: 206 AIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLC 265
Query: 154 CTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDY 213
TASI LC+I+VDRY+AIT P +Y T + + ++ VW+ + S P+ + + Y
Sbjct: 266 VTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQM--HWY 323
Query: 214 REDNGVSF--------CSVCQNYGYQIYATLGSFYIPLTVMITVYYKIFCAARKIVAEEK 265
R + + C N Y I +++ SFY+PL +M+ VY ++F A++ + +
Sbjct: 324 RATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKID 383
Query: 266 RAQSH 270
+++
Sbjct: 384 KSEGR 388
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 92/174 (52%), Gaps = 10/174 (5%)
Query: 94 AVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLS 153
A+ +L+ NY + SLA +DL + + V+P + + W FG C W S DVL
Sbjct: 65 AIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLC 124
Query: 154 CTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDY 213
TASI LC+I+VDRY+AIT P +Y T + + ++ VW+ + S P+ + + Y
Sbjct: 125 VTASIWTLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQM--HWY 182
Query: 214 REDNGVSF--------CSVCQNYGYQIYATLGSFYIPLTVMITVYYKIFCAARK 259
R + + C N Y I +++ SFY+PL +M+ VY ++F A++
Sbjct: 183 RATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKR 236
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 92/174 (52%), Gaps = 10/174 (5%)
Query: 94 AVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLS 153
A+ +L+ NY + SLA +DL + + V+P + + W FG C W S DVL
Sbjct: 65 AIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLC 124
Query: 154 CTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDY 213
TASI LC+I+VDRY+AIT P +Y T + + ++ VW+ + S P+ + + Y
Sbjct: 125 VTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQM--HWY 182
Query: 214 REDNGVSF--------CSVCQNYGYQIYATLGSFYIPLTVMITVYYKIFCAARK 259
R + + C N Y I +++ SFY+PL +M+ VY ++F A++
Sbjct: 183 RATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKR 236
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 92/174 (52%), Gaps = 10/174 (5%)
Query: 94 AVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLS 153
A+ +L+ NY + SLA +DL + + V+P + + W FG C W S DVL
Sbjct: 64 AIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLC 123
Query: 154 CTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDY 213
TASI LC+I+VDRY+AIT P +Y T + + ++ VW+ + S P+ + + Y
Sbjct: 124 VTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQM--HWY 181
Query: 214 REDNGVSF--------CSVCQNYGYQIYATLGSFYIPLTVMITVYYKIFCAARK 259
R + + C N Y I +++ SFY+PL +M+ VY ++F A++
Sbjct: 182 RATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKR 235
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 105 bits (262), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 97/184 (52%), Gaps = 10/184 (5%)
Query: 94 AVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLS 153
A+ +L+ NY + SLA +DL + + V+P + + W FG C W S DVL
Sbjct: 58 AIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLC 117
Query: 154 CTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDY 213
TASI LC+I+VDRY+AIT P +Y T + + ++ VW+ + S P+ + + Y
Sbjct: 118 VTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQM--HWY 175
Query: 214 REDNGVSF--------CSVCQNYGYQIYATLGSFYIPLTVMITVYYKIFCAARKIVAEEK 265
R + + C N Y I +++ SFY+PL +M+ VY ++F A++ + +
Sbjct: 176 RATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKID 235
Query: 266 RAQS 269
+++
Sbjct: 236 KSEG 239
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 105 bits (262), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 97/184 (52%), Gaps = 10/184 (5%)
Query: 94 AVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLS 153
A+ +L+ NY + SLA +DL + + V+P + + W FG C W S DVL
Sbjct: 57 AIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLC 116
Query: 154 CTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDY 213
TASI LC+I+VDRY+AIT P +Y T + + ++ VW+ + S P+ + + Y
Sbjct: 117 VTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQM--HWY 174
Query: 214 REDNGVSF--------CSVCQNYGYQIYATLGSFYIPLTVMITVYYKIFCAARKIVAEEK 265
R + + C N Y I +++ SFY+PL +M+ VY ++F A++ + +
Sbjct: 175 RATHQEAINCYANETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKID 234
Query: 266 RAQS 269
+++
Sbjct: 235 KSEG 238
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 97/184 (52%), Gaps = 10/184 (5%)
Query: 94 AVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLS 153
A+ +L+ NY + SLA +DL + + V+P + + W FG C W S DVL
Sbjct: 34 AIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLC 93
Query: 154 CTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDY 213
TASI LC+I+VDRY+AIT P +Y T + + ++ VW+ + S P+ + + Y
Sbjct: 94 VTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQM--HWY 151
Query: 214 REDNGVSF--------CSVCQNYGYQIYATLGSFYIPLTVMITVYYKIFCAARKIVAEEK 265
R + + C N Y I +++ SFY+PL +M+ VY ++F A++ + +
Sbjct: 152 RATHQEAINCYANETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKID 211
Query: 266 RAQS 269
+++
Sbjct: 212 KSEG 215
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 93/174 (53%), Gaps = 10/174 (5%)
Query: 94 AVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLS 153
A+ +L+ NY + SLA +DL + + V+P + ++ W FG C W S DVL
Sbjct: 29 AIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLC 88
Query: 154 CTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDY 213
TASI LC+I+VDRY+AIT P +Y T + + ++ VW+ + S P+ + + Y
Sbjct: 89 VTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQM--HWY 146
Query: 214 REDNGVSF--------CSVCQNYGYQIYATLGSFYIPLTVMITVYYKIFCAARK 259
R + + C N Y I +++ SFY+PL +M+ VY ++F A++
Sbjct: 147 RATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKR 200
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 91/174 (52%), Gaps = 10/174 (5%)
Query: 94 AVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLS 153
A+ +L+ NY + SLA +DL + + V+P + W FG C W S DVL
Sbjct: 33 AIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAACILMKMWTFGNFWCEFWTSIDVLC 92
Query: 154 CTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDY 213
TASI LC+I+VDRY+AIT P +Y T + + ++ VW+ + S P+ + + Y
Sbjct: 93 VTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQM--HWY 150
Query: 214 REDNGVSF--------CSVCQNYGYQIYATLGSFYIPLTVMITVYYKIFCAARK 259
R + + C N Y I +++ SFY+PL +M+ VY ++F A++
Sbjct: 151 RATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKR 204
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 97/200 (48%), Gaps = 5/200 (2%)
Query: 63 SPYSPLQAXXXXXXXXXXXXXXXXXXXXXCIAVCIVRKLRRPCNYLLVSLAVSDLCVAIL 122
SPY + +++ + R L+ NY L SLA +DL + +
Sbjct: 16 SPYKTFEVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVF 75
Query: 123 VMPMALLYEVSGKWNFGFMMCNLWVSFDVLSCTASILNLCMISVDRYYAITKPLEYGVKR 182
M + LY V G W G ++C+LW++ D + AS++NL +IS DRY+ +TKPL Y VKR
Sbjct: 76 SMNLYTLYTVIGYWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKR 135
Query: 183 TPKRMILCVVFVWLGAACISLPPLI----VLGNDYREDNGVSFCSVCQNYGYQIYATLGS 238
T K + + W+ + + P ++ ++G ED G + N + +
Sbjct: 136 TTKMAGMMIAAAWVLSFILWAPAILFWQFIVGVRTVED-GECYIQFFSNAAVTFGTAIAA 194
Query: 239 FYIPLTVMITVYYKIFCAAR 258
FY+P+ +M +Y+ I A++
Sbjct: 195 FYLPVIIMTVLYWHISRASK 214
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 92/171 (53%), Gaps = 3/171 (1%)
Query: 93 IAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVL 152
+A + ++L+ NY L+SLA +DL + ++ M + Y + +W G + C+LW+S D +
Sbjct: 35 VAFKVNKQLKTVNNYFLLSLACADLIIGVISMNLFTTYIIMNRWALGNLACDLWLSIDYV 94
Query: 153 SCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGND 212
+ AS++NL +IS DRY++IT+PL Y KRT KR + + W+ + + P ++
Sbjct: 95 ASNASVMNLLVISFDRYFSITRPLTYRAKRTTKRAGVMIGLAWVISFVLWAPAILFWQYF 154
Query: 213 YREDN---GVSFCSVCQNYGYQIYATLGSFYIPLTVMITVYYKIFCAARKI 260
+ G F + +FY+P+T+M +Y++I+ K+
Sbjct: 155 VGKRTVPPGECFIQFLSEPTITFGTAIAAFYMPVTIMTILYWRIYKETEKM 205
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 90/167 (53%), Gaps = 9/167 (5%)
Query: 99 RKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLSCTASI 158
RKL N +VSL+V+DL V +VMPM +LY + KW+ G +C W+S D ++ TASI
Sbjct: 37 RKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLCLFWLSMDYVASTASI 96
Query: 159 LNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLG-NDYREDN 217
++ ++ +DRY ++ +PL Y RT R ++ W + +P +LG N + +
Sbjct: 97 FSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFLWVIP---ILGWNHFMQQT 153
Query: 218 GVSFCSVCQNYGY-----QIYATLGSFYIPLTVMITVYYKIFCAARK 259
V C+ Y ++ + +FY+P +M+ Y KI+ A R+
Sbjct: 154 SVRREDKCETDFYDVTWFKVMTAIINFYLPTLLMLWFYAKIYKAVRQ 200
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 83/185 (44%), Gaps = 15/185 (8%)
Query: 92 CIAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDV 151
C AV + L+ NY +VSLA +D+ V +L +P A+ +S + C F +
Sbjct: 53 CWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAI--TISTGFCAACHGCLFIACFVL 110
Query: 152 LSCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGN 211
+ +SI +L I++DRY AI PL Y T R + W+ + I L P++ N
Sbjct: 111 VLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNN 170
Query: 212 DYREDNGVSFCSVCQN------------YGYQIYAT-LGSFYIPLTVMITVYYKIFCAAR 258
+ G + C Y +Y +PL +M+ VY +IF AAR
Sbjct: 171 CGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAAR 230
Query: 259 KIVAE 263
+ +A+
Sbjct: 231 RQLAD 235
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 10/179 (5%)
Query: 99 RKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLSCTASI 158
+KLR P NY+L++LAV+DL + L + G + FG CNL F L ++
Sbjct: 67 KKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIAL 126
Query: 159 LNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDYREDNG 218
+L +++++RY + KP+ + I+ V F W+ A + PPL+ E
Sbjct: 127 WSLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQ 185
Query: 219 VSFCSV--------CQNYGYQIYATLGSFYIPLTVMITVYYKIFCAARKIVAEEKRAQS 269
S C + N + IY + F IPL V+ Y ++ ++ A+++ + +
Sbjct: 186 CS-CGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESAT 243
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 10/179 (5%)
Query: 99 RKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLSCTASI 158
+KLR P NY+L++LAV+DL + L + G + FG CNL F L ++
Sbjct: 66 KKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIAL 125
Query: 159 LNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDYREDNG 218
+L +++++RY + KP+ + I+ V F W+ A + PPL+ E
Sbjct: 126 WSLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQ 184
Query: 219 VSFCSV--------CQNYGYQIYATLGSFYIPLTVMITVYYKIFCAARKIVAEEKRAQS 269
S C + N + IY + F IPL V+ Y ++ ++ A+++ + +
Sbjct: 185 CS-CGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESAT 242
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 10/179 (5%)
Query: 99 RKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLSCTASI 158
+KLR P NY+L++LAV+DL + L + G + FG CNL F L ++
Sbjct: 67 KKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLQGFFATLGGEIAL 126
Query: 159 LNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDYREDNG 218
+L +++++RY + KP+ + I+ V F W+ A + PPL+ E
Sbjct: 127 WSLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQ 185
Query: 219 VSFCSV--------CQNYGYQIYATLGSFYIPLTVMITVYYKIFCAARKIVAEEKRAQS 269
S C + N + IY + F IPL V+ Y ++ ++ A+++ + +
Sbjct: 186 CS-CGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESAT 243
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 10/179 (5%)
Query: 99 RKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLSCTASI 158
+KLR P NY+L++LAV+DL + L + G + FG CNL F L ++
Sbjct: 67 KKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIAL 126
Query: 159 LNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDYREDNG 218
+L +++++RY + KP+ + I+ V F W+ A + PPL+ E
Sbjct: 127 WSLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQ 185
Query: 219 VSFCSV--------CQNYGYQIYATLGSFYIPLTVMITVYYKIFCAARKIVAEEKRAQS 269
S C + N + IY + F IPL V+ Y ++ ++ A+++ + +
Sbjct: 186 CS-CGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESAT 243
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 10/179 (5%)
Query: 99 RKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLSCTASI 158
+KLR P NY+L++LAV+DL + L + G + FG CNL F L ++
Sbjct: 67 KKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIAL 126
Query: 159 LNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDYREDNG 218
+L +++++RY + KP+ + I+ V F W+ A + PPL+ E
Sbjct: 127 WSLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQ 185
Query: 219 VSFCSV--------CQNYGYQIYATLGSFYIPLTVMITVYYKIFCAARKIVAEEKRAQS 269
S C + N + IY + F IPL V+ Y ++ ++ A+++ + +
Sbjct: 186 CS-CGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESAT 243
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 10/179 (5%)
Query: 99 RKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLSCTASI 158
+KLR P NY+L++LAV+DL + L + G + FG CNL F L ++
Sbjct: 66 KKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIAL 125
Query: 159 LNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDYREDNG 218
+L +++++RY + KP+ + I+ V F W+ A + PPL+ E
Sbjct: 126 WSLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQ 184
Query: 219 VSFCSV--------CQNYGYQIYATLGSFYIPLTVMITVYYKIFCAARKIVAEEKRAQS 269
S C + N + IY + F IPL V+ Y ++ ++ A+++ + +
Sbjct: 185 CS-CGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESAT 242
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 80/159 (50%), Gaps = 9/159 (5%)
Query: 100 KLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLSCTASIL 159
K++ N + +LA++D V MP + W FG ++C + +S D + SI
Sbjct: 52 KMKTATNIYIFNLALADALVTT-TMPFQSTVYLMNSWPFGDVLCKIVLSIDYYNMFTSIF 110
Query: 160 NLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDYREDNGV 219
L M+SVDRY A+ P++ RTP + + + +WL ++ + + +++ G RED V
Sbjct: 111 TLTMMSVDRYIAVCHPVKALDFRTPLKAKIINICIWLLSSSVGISAIVLGGTKVREDVDV 170
Query: 220 SFCSVC---QNYGY-----QIYATLGSFYIPLTVMITVY 250
CS+ +Y + +I + +F IP+ ++I Y
Sbjct: 171 IECSLQFPDDDYSWWDLFMKICVFIFAFVIPVLIIIVCY 209
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 15/181 (8%)
Query: 92 CIAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDV 151
C AV + L+ NY +VSLA +D+ V +L +P A+ +S + C F +
Sbjct: 43 CWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAI--TISTGFCAACHGCLFIACFVL 100
Query: 152 LSCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGN 211
+ +SI +L I++DRY AI PL Y T R + W+ + I L P++ N
Sbjct: 101 VLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNN 160
Query: 212 DYREDNGVSFCSVCQN------------YGYQIYAT-LGSFYIPLTVMITVYYKIFCAAR 258
+ G + C Y +Y +PL +M+ VY +IF AAR
Sbjct: 161 CGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAAR 220
Query: 259 K 259
+
Sbjct: 221 R 221
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 15/181 (8%)
Query: 92 CIAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDV 151
C AV + L+ NY +VSLA +D+ V +L +P A+ +S + C F +
Sbjct: 28 CWAVWLNSNLQNVTNYFVVSLAAADILVGVLAIPFAI--TISTGFCAACHGCLFIACFVL 85
Query: 152 LSCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGN 211
+ +SI +L I++DRY AI PL Y T R + W+ + I L P++ N
Sbjct: 86 VLAQSSIFSLLAIAIDRYIAIAIPLRYNGLVTGTRAAGIIAICWVLSFAIGLTPMLGWNN 145
Query: 212 DYREDNGVSFCSVCQN------------YGYQIYAT-LGSFYIPLTVMITVYYKIFCAAR 258
+ G + C Y +Y +PL +M+ VY +IF AAR
Sbjct: 146 CGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFAAAR 205
Query: 259 K 259
+
Sbjct: 206 R 206
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 97 IVR--KLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLSC 154
IVR K++ N + +LA++D +A +P + + G W FG ++C + +S D +
Sbjct: 42 IVRYTKMKTATNIYIFNLALAD-ALATSTLPFQSVNYLMGTWPFGNILCKIVISIDYYNM 100
Query: 155 TASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDYR 214
SI LC +SVDRY A+ P++ RTP+ + V W+ ++ I LP + + YR
Sbjct: 101 FTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLPVMFMATTKYR 160
Query: 215 EDN 217
+ +
Sbjct: 161 QGS 163
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
Query: 99 RKLRRPCNYLLVSLAVSDLCVAIL-VMPMALLYEVSGKWNFGFMMCNLWVSFDVLSCTAS 157
+ L+ P N +++LA SD +++ P+ + KW FGF C ++ + S
Sbjct: 63 KSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMS 122
Query: 158 ILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLG 210
I+ + MIS+DRY I +P+ K + +R + ++FVWL + ++ P+ G
Sbjct: 123 IMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWG 175
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
Query: 99 RKLRRPCNYLLVSLAVSDLCVAIL-VMPMALLYEVSGKWNFGFMMCNLWVSFDVLSCTAS 157
+ L+ P N +++LA SD +++ P+ + KW FGF C ++ + S
Sbjct: 62 KSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMS 121
Query: 158 ILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLG 210
I+ + MIS+DRY I +P+ K + +R + ++FVWL + ++ P+ G
Sbjct: 122 IMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWG 174
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 79/181 (43%), Gaps = 15/181 (8%)
Query: 92 CIAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDV 151
C AV + L+ NY +VSLA +D+ V +L +P A+ +S + C F +
Sbjct: 28 CWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAI--TISTGFCAACHGCLFIACFVL 85
Query: 152 LSCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGN 211
+ +SI +L I++DRY AI PL Y T R + W+ + I L P++ N
Sbjct: 86 VLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNN 145
Query: 212 DYREDNGVSFCSVCQN------------YGYQIYAT-LGSFYIPLTVMITVYYKIFCAAR 258
+ G C Y +Y +PL +M+ VY +IF AAR
Sbjct: 146 CGQPKEGKQHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAAR 205
Query: 259 K 259
+
Sbjct: 206 R 206
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 79/181 (43%), Gaps = 15/181 (8%)
Query: 92 CIAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDV 151
C AV + L+ NY +VS A +D+ V +L +P A+ +S + C F +
Sbjct: 28 CWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFAI--AISTGFCAACHGCLFIACFVL 85
Query: 152 LSCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGN 211
+ +SI +L I++DRY AI PL Y T R + W+ + I L P++ N
Sbjct: 86 VLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNN 145
Query: 212 DYREDNGVSFCSVCQN------------YGYQIYAT-LGSFYIPLTVMITVYYKIFCAAR 258
+ G + C Y +Y +PL +M+ VY +IF AAR
Sbjct: 146 CGQPKEGKAHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAAR 205
Query: 259 K 259
+
Sbjct: 206 R 206
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 99 RKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLSCTASI 158
+++R NY LV+LA ++ +A + Y V +W +G C F + + ASI
Sbjct: 61 KRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASI 120
Query: 159 LNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLP 204
++ ++ DRY AI PL+ + T ++++CV +W+ A ++ P
Sbjct: 121 YSMTAVAFDRYMAIIHPLQPRLSATATKVVICV--IWVLALLLAFP 164
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 90/198 (45%), Gaps = 15/198 (7%)
Query: 97 IVR--KLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLSC 154
IVR KL+ N + +LA++D +A +P + W FG ++C +S D +
Sbjct: 39 IVRYTKLKTATNIYIFNLALAD-ALATSTLPFQSAKYLMETWPFGELLCKAVLSIDYYNM 97
Query: 155 TASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDYR 214
SI L M+SVDRY A+ P++ RTP + L + +W+ A+ + +P +++ R
Sbjct: 98 FTSIFTLTMMSVDRYIAVCHPVKALDFRTPAKAKLINICIWVLASGVGVPIMVMAVTQPR 157
Query: 215 EDNGVSFCSVCQNYGY-----QIYATLGSFYIPLTVMITVYYKIFCAARKI--VAEEKRA 267
+ V Y +I L +F +P+ ++ Y + R + + E R
Sbjct: 158 DGAVVCMLQFPSPSWYWDTVTKICVFLFAFVVPILIITVCYGLMLLRLRSVRNIFEMLR- 216
Query: 268 QSHIIMEHCYLQIHNNSS 285
I E L+I+ N+
Sbjct: 217 ----IDEGLRLKIYKNTE 230
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 10/158 (6%)
Query: 100 KLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLSCTASIL 159
K++ N + +LA++D V +L +P + G W FG +C ++ D + S
Sbjct: 155 KMKTATNIYIFNLALADTLV-LLTLPFQGTDILLGFWPFGNALCKTVIAIDYYNMFTSTF 213
Query: 160 NLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDYREDNGV 219
L +SVDRY AI P+ RT + V +W A+ + + P+ ++G+ ED +
Sbjct: 214 TLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALASVVGV-PVAIMGSAQVEDEEI 272
Query: 220 SFCSV----CQNYGYQIYAT---LGSFYIPLTVMITVY 250
C V Q+Y ++A L SF +P+ V+ Y
Sbjct: 273 E-CLVEIPTPQDYWGPVFAICIFLFSFIVPVLVISVCY 309
>pdb|1HLL|A Chain A, Nmr Structure Of T3-I2, A 32 Residue Peptide From The
Alpha- 2a Adrenergic Receptor
Length = 32
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 29/32 (90%)
Query: 155 TASILNLCMISVDRYYAITKPLEYGVKRTPKR 186
T+SI++LC IS+DRY++IT+ +EY +KRTP+R
Sbjct: 1 TSSIVHLCAISLDRYWSITQAIEYNLKRTPRR 32
>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1
(Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom
Length = 484
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 3/117 (2%)
Query: 93 IAVCIVR-KLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGK-WNFGFMMCNLWVSFD 150
I V I++ K+++P ++ LA +D+ + + V+P + Y SG W FG +C +
Sbjct: 42 IVVFILKMKVKKPAVVYMLHLATADV-LFVSVLPFKISYYFSGSDWQFGSELCRFVTAAF 100
Query: 151 VLSCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLI 207
+ ASIL + +IS+DR+ A+ P++ RT R + +W A +P L+
Sbjct: 101 YCNMYASILLMTVISIDRFLAVVYPMQSLSWRTLGRASFTCLAIWALAIAGVVPLLL 157
>pdb|1HOF|A Chain A, Nmr Structure Of T3-I2, A 32 Residue Peptide From The
Alpha- 2a Adrenergic Receptor
Length = 32
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 28/31 (90%)
Query: 156 ASILNLCMISVDRYYAITKPLEYGVKRTPKR 186
+SI++LC IS+DRY++IT+ +EY +KRTP+R
Sbjct: 2 SSIVHLCAISLDRYWSITQAIEYNLKRTPRR 32
>pdb|1HO9|A Chain A, Best 20 Nmr Conformers Of D130i Mutant T3-I2, A 32 Residue
Peptide From The Alpha 2a Adrenergic Receptor
pdb|1HOD|A Chain A, Nmr Structure Of D130i Mutant T3-I2, A 32 Residue Peptide
From The Alpha 2a Adrenergic Receptor
Length = 32
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 27/31 (87%)
Query: 156 ASILNLCMISVDRYYAITKPLEYGVKRTPKR 186
+SI++LC IS+ RY++IT+ +EY +KRTP+R
Sbjct: 2 SSIVHLCAISLIRYWSITQAIEYNLKRTPRR 32
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 136 WNFGFMMCNLWVSFDVLSCT-ASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFV 194
W FG C + F +CT A+ LN+ +SV RY AI P + + R + +
Sbjct: 103 WAFGDAGCRGYY-FLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAI 161
Query: 195 WLGAACISLPPLIVLGNDYREDNG 218
WL +A +++P L +G R +G
Sbjct: 162 WLASALLAIPMLFTMGLQNRSADG 185
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 99 RKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLSCTASI 158
+KLR + + L+V+DL I + A+ + W FG +C ++ +S+
Sbjct: 77 KKLRSMTDKYRLHLSVADLLFVITLPFWAV--DAVANWYFGNFLCKAVHVIYTVNLYSSV 134
Query: 159 LNLCMISVDRYYAITKPLEYGVKRTPKRMI---LCVVFVWLGAACISLPPLI 207
L IS+DRY AI + P++++ + V VW+ A +++P I
Sbjct: 135 WILAFISLDRYLAIVHATN---SQRPRKLLAEKVVYVGVWIPALLLTIPDFI 183
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 99 RKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLSCTASI 158
+KLR + + L+V+DL I + A+ + W FG +C ++ +S+
Sbjct: 77 KKLRSMTDKYRLHLSVADLLFVITLPFWAV--DAVANWYFGNFLCKAVHVIYTVNLYSSV 134
Query: 159 LNLCMISVDRYYAITKPLEYGVKRTPKRMI---LCVVFVWLGAACISLPPLI 207
L IS+DRY AI + P++++ + V VW+ A +++P I
Sbjct: 135 WILAFISLDRYLAIVHATN---SQRPRKLLAEKVVYVGVWIPALLLTIPDFI 183
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 99 RKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLSCTASI 158
+KLR + + L+V+DL I + A+ + W FG +C ++ +S+
Sbjct: 77 KKLRSMTDKYRLHLSVADLLFVITLPFWAV--DAVANWYFGNFLCKAVHVIYTVNLYSSV 134
Query: 159 LNLCMISVDRYYAITKPLEYGVKRTPKRMI---LCVVFVWLGAACISLPPLI 207
L IS+DRY AI + P++++ + V VW+ A +++P I
Sbjct: 135 WILAFISLDRYLAIVHATN---SQRPRKLLAEKVVYVGVWIPALLLTIPDFI 183
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 131 EVSGKWNFGFMMCNLWVSFDVLSCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILC 190
+V+G W FG +C + ++ + IL L ISVDRY AI T KR +
Sbjct: 71 KVNG-WIFGTFLCKVVSLLKEVNFYSGILLLACISVDRYLAIVHATR---TLTQKRHL-- 124
Query: 191 VVFVWLGAACISLP---PLIVLGNDYREDNGVSFC 222
V FV LG +S+ P + Y +N C
Sbjct: 125 VKFVCLGCWGLSMNLSLPFFLFRQAYHPNNSSPVC 159
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
3.35a
pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
2.80a
Length = 520
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 17/84 (20%)
Query: 99 RKLRRPCNYLLVSLAVSDLCVAI-----LVMPMALLYEVS-GKWNF--GFMMCNLWVSFD 150
+K RP Y + +LA+SDL + L++ A Y+++ +W G M L
Sbjct: 92 KKFHRPMYYFIGNLALSDLLAGVAYTANLLLSGATTYKLTPAQWFLREGSMFVAL----- 146
Query: 151 VLSCTASILNLCMISVDRYYAITK 174
+AS+ +L I+++RY + K
Sbjct: 147 ----SASVFSLLAIAIERYITMLK 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.137 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,748,646
Number of Sequences: 62578
Number of extensions: 462306
Number of successful extensions: 868
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 790
Number of HSP's gapped (non-prelim): 47
length of query: 483
length of database: 14,973,337
effective HSP length: 103
effective length of query: 380
effective length of database: 8,527,803
effective search space: 3240565140
effective search space used: 3240565140
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)