Query psy929
Match_columns 483
No_of_seqs 321 out of 2961
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 23:39:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy929.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/929hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 100.0 6.6E-37 1.4E-41 295.4 8.8 269 64-387 29-313 (423)
2 PHA03234 DNA packaging protein 100.0 4.2E-32 9.2E-37 271.3 19.5 275 67-372 29-318 (338)
3 KOG4220|consensus 100.0 6.4E-33 1.4E-37 266.9 8.6 202 65-266 25-229 (503)
4 PHA02834 chemokine receptor-li 100.0 5.5E-31 1.2E-35 262.7 17.9 220 68-357 26-252 (323)
5 PHA02638 CC chemokine receptor 100.0 2.7E-30 5.9E-35 265.0 18.7 273 69-371 97-398 (417)
6 PHA03235 DNA packaging protein 100.0 1.3E-29 2.7E-34 259.1 19.6 275 67-370 29-323 (409)
7 PF00001 7tm_1: 7 transmembran 100.0 2.2E-28 4.8E-33 233.5 15.9 224 87-360 1-228 (257)
8 PHA03087 G protein-coupled che 100.0 9.5E-28 2.1E-32 240.9 18.7 222 68-356 38-266 (335)
9 KOG2087|consensus 99.8 6E-21 1.3E-25 183.3 8.9 279 72-382 26-318 (363)
10 PF10320 7TM_GPCR_Srsx: Serpen 99.8 3.5E-18 7.5E-23 164.6 11.0 170 82-260 2-174 (257)
11 PF10328 7TM_GPCR_Srx: Serpent 99.5 3.3E-13 7.2E-18 131.5 18.1 220 79-354 2-230 (274)
12 PF10324 7TM_GPCR_Srw: Serpent 99.4 1.1E-11 2.3E-16 123.6 15.0 229 79-362 5-270 (318)
13 PF10323 7TM_GPCR_Srv: Serpent 99.1 5.4E-10 1.2E-14 109.2 13.5 181 81-261 5-194 (283)
14 PF05296 TAS2R: Mammalian tast 99.1 9.3E-09 2E-13 101.4 21.6 196 70-266 6-216 (303)
15 PF05462 Dicty_CAR: Slime mold 99.1 1.7E-08 3.7E-13 98.7 20.8 128 72-207 8-135 (303)
16 PF11710 Git3: G protein-coupl 98.8 3.1E-07 6.7E-12 84.8 17.5 177 82-262 12-199 (201)
17 PF10321 7TM_GPCR_Srt: Serpent 98.4 9.4E-06 2E-10 80.0 16.5 186 68-261 30-226 (313)
18 PF02101 Ocular_alb: Ocular al 98.4 2.6E-05 5.7E-10 76.5 18.3 188 106-356 68-266 (405)
19 PF10292 7TM_GPCR_Srab: Serpen 98.2 0.00014 3.1E-09 72.6 20.1 127 74-201 20-153 (324)
20 PF10317 7TM_GPCR_Srd: Serpent 98.2 0.00015 3.2E-09 71.4 19.7 128 75-208 3-142 (292)
21 PF03402 V1R: Vomeronasal orga 98.1 7E-06 1.5E-10 78.4 6.8 162 100-263 6-180 (265)
22 PF10316 7TM_GPCR_Srbc: Serpen 97.9 0.00038 8.2E-09 67.2 15.2 122 71-192 6-130 (273)
23 PF02118 Srg: Srg family chemo 97.9 0.00025 5.5E-09 68.9 13.8 127 78-205 5-142 (275)
24 PF04789 DUF621: Protein of un 97.8 0.0016 3.5E-08 61.3 17.2 168 88-258 32-214 (305)
25 PF00002 7tm_2: 7 transmembran 97.7 1.2E-05 2.7E-10 76.6 1.9 129 75-208 5-133 (242)
26 PF10327 7TM_GPCR_Sri: Serpent 97.5 0.0018 3.9E-08 63.9 13.6 227 72-356 10-262 (303)
27 KOG4193|consensus 97.3 0.0074 1.6E-07 64.7 16.1 165 79-259 328-494 (610)
28 PF10326 7TM_GPCR_Str: Serpent 97.0 0.0015 3.2E-08 64.8 6.4 101 79-179 7-118 (307)
29 PF02117 7TM_GPCR_Sra: Serpent 96.9 0.055 1.2E-06 54.0 17.0 107 72-178 22-136 (328)
30 PF06681 DUF1182: Protein of u 96.5 0.053 1.2E-06 49.1 11.9 95 78-177 48-151 (226)
31 KOG4564|consensus 96.3 0.35 7.6E-06 50.1 18.2 177 75-260 149-337 (473)
32 PF01534 Frizzled: Frizzled/Sm 95.8 1.8 3.9E-05 43.1 20.3 154 69-226 7-173 (328)
33 PF10318 7TM_GPCR_Srh: Serpent 95.4 0.64 1.4E-05 45.7 15.6 134 73-208 6-148 (302)
34 PF02175 7TM_GPCR_Srb: Serpent 95.4 2 4.4E-05 40.1 17.4 47 136-182 78-124 (236)
35 PF10322 7TM_GPCR_Sru: Serpent 94.9 2.4 5.2E-05 41.8 17.7 121 140-261 100-226 (307)
36 PF10319 7TM_GPCR_Srj: Serpent 94.9 1.9 4.1E-05 42.2 16.6 107 79-185 13-130 (310)
37 PF03125 Sre: C. elegans Sre G 93.7 7.6 0.00016 39.4 19.0 134 69-202 25-182 (365)
38 PF02076 STE3: Pheromone A rec 92.9 3 6.5E-05 40.7 13.9 123 83-211 3-128 (283)
39 PF03383 Serpentine_r_xa: Caen 92.8 0.13 2.8E-06 44.9 3.8 59 149-207 50-108 (153)
40 PHA03234 DNA packaging protein 91.2 0.079 1.7E-06 53.2 0.8 32 325-356 228-259 (338)
41 PHA03235 DNA packaging protein 89.6 0.49 1.1E-05 48.9 5.0 29 329-357 239-267 (409)
42 PHA02638 CC chemokine receptor 86.0 1 2.3E-05 46.6 4.9 29 328-356 307-335 (417)
43 KOG4219|consensus 84.2 0.55 1.2E-05 47.2 1.7 73 297-370 262-335 (423)
44 PF13853 7tm_4: Olfactory rece 81.5 0.16 3.6E-06 44.1 -2.8 80 188-268 4-95 (144)
45 PHA02834 chemokine receptor-li 61.1 2.6 5.6E-05 41.9 -0.2 70 299-368 232-307 (323)
46 KOG4220|consensus 50.2 4.8 0.0001 40.8 -0.3 60 325-389 408-467 (503)
47 PF10325 7TM_GPCR_Srz: Serpent 49.8 2.4E+02 0.0051 26.9 16.8 109 149-261 88-197 (267)
48 PF01528 Herpes_glycop: Herpes 48.1 3.2E+02 0.0069 27.8 15.1 32 235-266 306-337 (374)
49 KOG1935|consensus 43.9 9.2 0.0002 42.1 0.6 35 422-456 709-747 (1143)
50 PF06454 DUF1084: Protein of u 42.2 3.3E+02 0.0073 26.4 11.1 19 69-87 27-45 (281)
51 PF01102 Glycophorin_A: Glycop 42.2 30 0.00065 29.1 3.3 21 83-103 75-95 (122)
52 COG1230 CzcD Co/Zn/Cd efflux s 33.4 4.7E+02 0.01 25.7 10.4 67 77-146 127-194 (296)
53 PF11044 TMEMspv1-c74-12: Plec 25.5 2.2E+02 0.0047 19.2 4.5 23 239-261 11-33 (49)
54 PHA03237 envelope glycoprotein 25.3 7.8E+02 0.017 25.5 13.2 23 239-261 333-355 (424)
55 PF09882 DUF2109: Predicted me 23.8 1.9E+02 0.0041 22.1 4.5 47 80-126 3-49 (78)
56 PF11970 Git3_C: G protein-cou 23.3 40 0.00087 25.7 0.9 28 325-352 3-31 (76)
57 PF14362 DUF4407: Domain of un 20.4 8E+02 0.017 23.8 9.9 21 155-175 51-71 (301)
58 PF15086 UPF0542: Uncharacteri 20.3 2.8E+02 0.006 20.9 4.7 35 230-264 20-55 (74)
59 KOG3609|consensus 20.2 1.1E+03 0.025 26.5 11.3 83 121-207 321-405 (822)
No 1
>KOG4219|consensus
Probab=100.00 E-value=6.6e-37 Score=295.43 Aligned_cols=269 Identities=22% Similarity=0.342 Sum_probs=221.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhH
Q psy929 64 PYSPLQALIIGLILLIIIIVTIVGNILVCIAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMC 143 (483)
Q Consensus 64 ~~~~~~~~~l~~~~~li~v~gl~gN~lvi~vi~~~~~lrt~~~ill~nLavaDll~~~~~~p~~i~~~~~~~~~~~~~~C 143 (483)
..+..+..+.+++|.++.+++++||++|++++..+|++|+.+|+|++|||+||++.+++..++...+....+|.+|..+|
T Consensus 29 ~lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f~C 108 (423)
T KOG4219|consen 29 VLPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSFYC 108 (423)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcccccccee
Confidence 45667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHheeeCCcccceeeccchhhhhhHHHHHHHHHHHHhhHhhhccccccCC---Ccc
Q psy929 144 NLWVSFDVLSCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDYREDN---GVS 220 (483)
Q Consensus 144 ~~~~~l~~~~~~~S~~~l~~IsidRy~aI~~P~~y~~~~t~~~~~~~i~~iWl~s~l~~~p~~~~~~~~~~~~~---~~~ 220 (483)
++..|+......+|+++|++||+|||+||.||++-+ .+++.++.+++++|++|+++++|..+.......+.. ...
T Consensus 109 ~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r--~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d~~~~~ 186 (423)
T KOG4219|consen 109 RFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQPR--PSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYDGESRV 186 (423)
T ss_pred eeccccchhhhhHhHHHHHHHHHHHHHHHhhhcccC--CCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccCCcceE
Confidence 999999999999999999999999999999999854 899999999999999999999999776653332221 122
Q ss_pred ccccccc-------------chhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHhhhcceeeeeeeccccCCCCCC
Q psy929 221 FCSVCQN-------------YGYQIYATLGSFYIPLTVMITVYYKIFCAARKIVAEEKRAQSHIIMEHCYLQIHNNSSPA 287 (483)
Q Consensus 221 ~C~~~~~-------------~~~~~~~~~~~~~lPl~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (483)
.|...+. ..|...+.++.|++|++++.++|..|.+++|+.+.....+.
T Consensus 187 ~~~~~~pe~~~~~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~~gd~~d------------------- 247 (423)
T KOG4219|consen 187 VCVTAWPEHVCPTENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIPGDQQD------------------- 247 (423)
T ss_pred EEEEecccccCCcchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCccchhc-------------------
Confidence 3322211 12677778888999999999999999999997531110000
Q ss_pred CCCCCCccccccccccCCCCccCCCCccccccchhhHHHHhhhhhhhhhhhhhhhhhccccchhhhhhhhhhhHHHHHHh
Q psy929 288 TNSNRGHTHRTSTTSTNTTGRWKPGGCRKWLRTQDRVQCKRKNKANKYQEIQESLDLDCTSEYFTRTLEVNDFQLNLKRA 367 (483)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~w~P~~~~~~~~~~~~~~~~~~~k~~k~l~iiv~vflicwlP~~i~~l~~~~f~~~~~~~ 367 (483)
.+...-+.++|+.||++++++.|.+||+||-++.++ ......+...
T Consensus 248 ---------------------------------~~~~~~kak~K~vkmliiVV~~FaicWlPyh~y~il-~~~~~~i~~~ 293 (423)
T KOG4219|consen 248 ---------------------------------RKHEQLKAKKKVVKMLIIVVVIFAICWLPYHIYFIL-NATNPEINRK 293 (423)
T ss_pred ---------------------------------hhhHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHH-HHhHHHHHHH
Confidence 112456667889999999999999999999999888 4455555555
Q ss_pred hhhhhheeeeeeccccccCC
Q psy929 368 RRKALLFVSLSQLGTVSKSR 387 (483)
Q Consensus 368 ~~~~~~~~~~~~~~~~ss~~ 387 (483)
-+....+...-|+.+.|+.-
T Consensus 294 k~i~~vyl~~~WLaMSst~y 313 (423)
T KOG4219|consen 294 KFIQQVYLAIYWLAMSSTCY 313 (423)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 55566667778998888754
No 2
>PHA03234 DNA packaging protein UL33; Provisional
Probab=100.00 E-value=4.2e-32 Score=271.26 Aligned_cols=275 Identities=13% Similarity=0.144 Sum_probs=196.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHH
Q psy929 67 PLQALIIGLILLIIIIVTIVGNILVCIAVC--IVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCN 144 (483)
Q Consensus 67 ~~~~~~l~~~~~li~v~gl~gN~lvi~vi~--~~~~lrt~~~ill~nLavaDll~~~~~~p~~i~~~~~~~~~~~~~~C~ 144 (483)
...+.+++++|.+++++|++||+++++++. +++++|+++|+|++|||+||+++++ .+|+.+.+. .++|.+|+..|+
T Consensus 29 ~~~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l-~lp~~~~~~-~~~w~fG~~lCk 106 (338)
T PHA03234 29 KKAQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHML-CVFFLTLNR-EALFNFNQAFCQ 106 (338)
T ss_pred HHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH-HHHHHHHHH-hCCccCchhHHH
Confidence 346778999999999999999999999554 5566799999999999999999965 556555443 457999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHheeeCCcccceeeccchhhhhhHHHHHHHHHHHHhhHhhhccccccCCCcccccc
Q psy929 145 LWVSFDVLSCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDYREDNGVSFCSV 224 (483)
Q Consensus 145 ~~~~l~~~~~~~S~~~l~~IsidRy~aI~~P~~y~~~~t~~~~~~~i~~iWl~s~l~~~p~~~~~~~~~~~~~~~~~C~~ 224 (483)
+..++..++.++|+++|++||+|||+||++|.+++. +.+++...++++|+.+++.++|.++.... ...+.....|..
T Consensus 107 ~~~~~~~~~~~~Si~~L~~ISiDRY~aIv~p~~~~~--~~~~~~~~i~~~Wi~s~l~~~P~l~~~~~-~~~~~~~~~C~~ 183 (338)
T PHA03234 107 CVLFIYHASCSYSICMLAIIATIRYKTLHRRKKNDK--KNNHIGRNIGILFLASAMCAIPAALFVKT-EGKKGNYGKCNI 183 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHeeeechhhhhh--hhhhHHHHHHHHHHHHHHHHhhHhHeeee-eecCCCCCcCcc
Confidence 999999999999999999999999999999988642 33444456666799999999998754321 111222245754
Q ss_pred ccc--chhhhh------hhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHhhhcceeeeeeeccccCCCCCCCCCCCCccc
Q psy929 225 CQN--YGYQIY------ATLGSFYIPLTVMITVYYKIFCAARKIVAEEKRAQSHIIMEHCYLQIHNNSSPATNSNRGHTH 296 (483)
Q Consensus 225 ~~~--~~~~~~------~~~~~~~lPl~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (483)
.++ ..+..+ .+++.|++|+++|++||.+|.+++++...++ + + +..+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~f~iPl~im~~cY~~I~~~L~~~~~~~-~--~-----------------------k~~k 237 (338)
T PHA03234 184 HISSKKAYDLFIAIKIVFCFIWGIFPTMIFSFFYVIFCKALHALTEKK-H--K-----------------------KTLF 237 (338)
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-h--h-----------------------hhhh
Confidence 432 122211 2233478999999999999999987642111 1 0 1112
Q ss_pred cccccccCCCCccCCCCccccccchhhH----HHHhhhhhhh-hhhhhhhhhhccccchhhhhhhhhhhHHHHHHhhhhh
Q psy929 297 RTSTTSTNTTGRWKPGGCRKWLRTQDRV----QCKRKNKANK-YQEIQESLDLDCTSEYFTRTLEVNDFQLNLKRARRKA 371 (483)
Q Consensus 297 ~~~~~~~~~~~~w~P~~~~~~~~~~~~~----~~~~~~k~~k-~l~iiv~vflicwlP~~i~~l~~~~f~~~~~~~~~~~ 371 (483)
....+...|..||+||+...+....... .+..+..... ........++.|++++++|.+.++.||+.+...+++.
T Consensus 238 ~i~~vv~vF~iCWlPy~iv~l~~~~~~~~~~~~c~~~~~~~~~~~v~~~La~~nsclNPiIY~f~~~~FR~~~~~~~~~~ 317 (338)
T PHA03234 238 FIRILILSFLCIQIPNIAILICEIAFLYIANNSCFGLAQREILQIIIRLMPEIHCFSNPLVYAFTGGDFRLRFTACFQDF 317 (338)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 3335578899999999988765432111 1111111111 2334457788999999999999999999988876554
Q ss_pred h
Q psy929 372 L 372 (483)
Q Consensus 372 ~ 372 (483)
.
T Consensus 318 ~ 318 (338)
T PHA03234 318 F 318 (338)
T ss_pred h
Confidence 4
No 3
>KOG4220|consensus
Probab=99.98 E-value=6.4e-33 Score=266.89 Aligned_cols=202 Identities=31% Similarity=0.580 Sum_probs=173.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHH
Q psy929 65 YSPLQALIIGLILLIIIIVTIVGNILVCIAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCN 144 (483)
Q Consensus 65 ~~~~~~~~l~~~~~li~v~gl~gN~lvi~vi~~~~~lrt~~~ill~nLavaDll~~~~~~p~~i~~~~~~~~~~~~~~C~ 144 (483)
+...+.++++++-.+++++.++||++|++.+.-+|+|++..|+|+++||+|||+.|++.+|+...+.+.+.|.+|...|.
T Consensus 25 ~~~~q~v~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~W~LG~~~Cd 104 (503)
T KOG4220|consen 25 YETWQVVFIVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGYWPLGPLVCD 104 (503)
T ss_pred ccceEEEeeehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHHcccccchHHHH
Confidence 33445566788888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHheeeCCcccceeeccchhhhhhHHHHHHHHHHHHhhHhhhcccc-ccCCCccccc
Q psy929 145 LWVSFDVLSCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDY-REDNGVSFCS 223 (483)
Q Consensus 145 ~~~~l~~~~~~~S~~~l~~IsidRy~aI~~P~~y~~~~t~~~~~~~i~~iWl~s~l~~~p~~~~~~~~~-~~~~~~~~C~ 223 (483)
+...+.++...+|++.|.+|++|||..|.+|+.|+..+|.+++..+|++.|++++++-.|.+++|.... ........|.
T Consensus 105 lWLalDYvaSNASVmNLLiISFDRYFsVTrPLtYrakRTtkrA~~MI~~AW~iSfiLWaPaIl~WqyivGkrTv~~~eC~ 184 (503)
T KOG4220|consen 105 LWLALDYVASNASVMNLLIISFDRYFSVTRPLTYRAKRTTKRAGLMIGAAWVLSFVLWAPAILFWQYIVGKRTVPDGECY 184 (503)
T ss_pred HHHHHHHHhhhhhhhhhheeeeecceeecccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhHhheeeeecCCCceE
Confidence 999999999999999999999999999999999999999999999999999999999999877765211 1122333564
Q ss_pred ccc--cchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHh
Q psy929 224 VCQ--NYGYQIYATLGSFYIPLTVMITVYYKIFCAARKIVAEEKR 266 (483)
Q Consensus 224 ~~~--~~~~~~~~~~~~~~lPl~ii~~~y~~I~~~lr~~~~~~~~ 266 (483)
... +.....-..+..|.+|..+|.++|.+|++..+++.+....
T Consensus 185 iQFlsnp~iTfGTAiAAFYlPVtiM~~LY~rIyret~kR~k~~~~ 229 (503)
T KOG4220|consen 185 IQFLSNPAITFGTAIAAFYLPVTIMTILYWRIYRETRKRQKELAK 229 (503)
T ss_pred EEeecCceeehhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 332 2233344556679999999999999999999987665443
No 4
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.97 E-value=5.5e-31 Score=262.68 Aligned_cols=220 Identities=19% Similarity=0.365 Sum_probs=172.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHH
Q psy929 68 LQALIIGLILLIIIIVTIVGNILVCIAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWV 147 (483)
Q Consensus 68 ~~~~~l~~~~~li~v~gl~gN~lvi~vi~~~~~lrt~~~ill~nLavaDll~~~~~~p~~i~~~~~~~~~~~~~~C~~~~ 147 (483)
....++.+++.+++++|++||+++++++.+++++ +++|+|++|||+||++. .+.+|+.+... .++|.+|+..|++..
T Consensus 26 ~~~~~~~~~~~li~v~~~~gN~lVi~vi~~~~~~-~~~n~~i~nLAiaDll~-~~~lP~~i~~~-~~~w~~g~~~C~~~~ 102 (323)
T PHA02834 26 DVNYFVIVFYILLFIFGLIGNVLVIAVLIVKRFM-FVVDVYLFNIAMSDLML-VFSFPFIIHND-LNEWIFGEFMCKLVL 102 (323)
T ss_pred chhhhHHHHHHHHHHHHHhhHHHHHHHHHhcccc-chhhhhhHHHHHHHHHH-HHHHHHHHHHH-cCCcCCcchHHHhHH
Confidence 3456788999999999999999999998876654 57899999999999987 67888876554 457999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHheeeCCcccceeeccchhhhhhHHHHHHHHHHHHhhHhhhccccccCCCcccccccc-
Q psy929 148 SFDVLSCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDYREDNGVSFCSVCQ- 226 (483)
Q Consensus 148 ~l~~~~~~~S~~~l~~IsidRy~aI~~P~~y~~~~t~~~~~~~i~~iWl~s~l~~~p~~~~~~~~~~~~~~~~~C~~~~- 226 (483)
++...+..+|++++++||+|||++|++|++++. .+.+++..+++++|+.+++.++|+.+..... .......|....
T Consensus 103 ~~~~~~~~~Si~tL~~IsidRY~aI~~P~~~~~-~~~~~~~~~i~~iWi~s~l~~~P~~~~~~~~--~~~~~~~C~~~~~ 179 (323)
T PHA02834 103 GVYFVGFFSNMFFVTLISIDRYILVVNATKIKN-KSISLSVLLSVAAWVCSVILSMPAMVLYYVD--NTDNLKQCIFNDY 179 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhheeCchhccC-CccchHHHHHHHHHHHHHHHHhhHHHHHHhc--cCCCceEEeccCC
Confidence 999999999999999999999999999998654 4556777888899999999999987654311 112233564211
Q ss_pred --cchh----hhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHhhhcceeeeeeeccccCCCCCCCCCCCCccccccc
Q psy929 227 --NYGY----QIYATLGSFYIPLTVMITVYYKIFCAARKIVAEEKRAQSHIIMEHCYLQIHNNSSPATNSNRGHTHRTST 300 (483)
Q Consensus 227 --~~~~----~~~~~~~~~~lPl~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (483)
+..+ ....+++.|++|+++|+++|.+|++.++++.+
T Consensus 180 ~~~~~~~~~~~~~~~i~~f~iPl~ii~~~Y~~I~~~l~~~~~-------------------------------------- 221 (323)
T PHA02834 180 HENFSWSAFFNFEINIFGIVIPLIILIYCYSKILYTLKNCKN-------------------------------------- 221 (323)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--------------------------------------
Confidence 1111 11233567899999999999999998876310
Q ss_pred cccCCCCccCCCCccccccchhhHHHHhhhhhhhhhhhhhhhhhccccchhhhhhhh
Q psy929 301 TSTNTTGRWKPGGCRKWLRTQDRVQCKRKNKANKYQEIQESLDLDCTSEYFTRTLEV 357 (483)
Q Consensus 301 ~~~~~~~~w~P~~~~~~~~~~~~~~~~~~~k~~k~l~iiv~vflicwlP~~i~~l~~ 357 (483)
++++|..|++.+++++|++||+||.+..++.
T Consensus 222 --------------------------~~~~k~~k~~~~vv~~F~icWlPy~i~~~l~ 252 (323)
T PHA02834 222 --------------------------KNKTRSIKIILTVVTFTVVFWVPFNIVLFIN 252 (323)
T ss_pred --------------------------cccceEEeehhHHHHHHHHHHhhHHHHHHHH
Confidence 1245778899999999999999999887763
No 5
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.97 E-value=2.7e-30 Score=265.05 Aligned_cols=273 Identities=19% Similarity=0.324 Sum_probs=204.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHHH
Q psy929 69 QALIIGLILLIIIIVTIVGNILVCIAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVS 148 (483)
Q Consensus 69 ~~~~l~~~~~li~v~gl~gN~lvi~vi~~~~~lrt~~~ill~nLavaDll~~~~~~p~~i~~~~~~~~~~~~~~C~~~~~ 148 (483)
...++.+++.+++++|++||+++++++. +|++|+++|++++|||++|+++ ++.+|+++... .++|.+|+..|++..+
T Consensus 97 ~~~~l~~~y~lvfvlgliGN~LVl~il~-~k~lrt~t~i~llnLAisDLl~-~l~lPf~i~~~-~~~W~fg~~~Ck~~~~ 173 (417)
T PHA02638 97 ISEYIKIFYIIIFILGLFGNAAIIMILF-CKKIKTITDIYIFNLAISDLIF-VIDFPFIIYNE-FDQWIFGDFMCKVISA 173 (417)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCHhHHHHHHHHHHHHHH-HHHHHHHHHHH-hccccccccchhhHHH
Confidence 5567889999999999999999998766 4788999999999999999988 56888887655 4689999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHheeeCCcccceeeccchhhhhhHHHHHHHHHHHHhhHhhhcccc------ccC--CCcc
Q psy929 149 FDVLSCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDY------RED--NGVS 220 (483)
Q Consensus 149 l~~~~~~~S~~~l~~IsidRy~aI~~P~~y~~~~t~~~~~~~i~~iWl~s~l~~~p~~~~~~~~~------~~~--~~~~ 220 (483)
+...+.+++++++++|++|||+||+||.+++...+++++..+++++|++++++++|+++..+... ..+ ....
T Consensus 174 l~~~~~~~Si~~L~~isiDRYlaIv~p~~~~~~~~~~~~~i~~~~iW~~s~l~slP~~~~~~~~~~~~~~~~~~~~~~~~ 253 (417)
T PHA02638 174 SYYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSPAYFIFEASNIIFSAQDSNETISNY 253 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccceecHhhhHhhHhHHHHHHHHHHHHHHHHhhccccccccccCCCCccCC
Confidence 99999999999999999999999999999887888888889999999999999999987654221 001 1123
Q ss_pred cccccccc-----h-----hhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHhhhcceeeeeeeccccCCCCCCCCC
Q psy929 221 FCSVCQNY-----G-----YQIYATLGSFYIPLTVMITVYYKIFCAARKIVAEEKRAQSHIIMEHCYLQIHNNSSPATNS 290 (483)
Q Consensus 221 ~C~~~~~~-----~-----~~~~~~~~~~~lPl~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (483)
.|....+. . +.....++++++|+++|++||.+|++++++..+++++
T Consensus 254 ~C~~~~~~~~~~~~~~~~~~~~~~~i~~f~lPl~vmi~cY~~I~~~L~~~~~~~k~------------------------ 309 (417)
T PHA02638 254 QCTLIEDNEKNNISFLGRILQFEINILGMFIPIIIFAFCYIKIILKLKQLKKSKKT------------------------ 309 (417)
T ss_pred eeeeeccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc------------------------
Confidence 56432211 1 1222345668999999999999999998764321111
Q ss_pred CCCccccccccccCCCCccCCCCccccccchhhH----------HHHhhhhhhh-hhhhhhhhhhccccchhhhhhhhhh
Q psy929 291 NRGHTHRTSTTSTNTTGRWKPGGCRKWLRTQDRV----------QCKRKNKANK-YQEIQESLDLDCTSEYFTRTLEVND 359 (483)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~w~P~~~~~~~~~~~~~----------~~~~~~k~~k-~l~iiv~vflicwlP~~i~~l~~~~ 359 (483)
+..+........+..||+|+++..+....... .+... +... ....-.+.++.|++++++|.+.++.
T Consensus 310 --k~~rli~~ivi~f~lcW~Py~i~~ll~~~~~~~~~~~~~~~~~c~~~-~l~~~~~vt~~la~~~sclNPiIY~f~~~~ 386 (417)
T PHA02638 310 --KSIIIVSIIIICSLICWIPLNIVILFATMYSFKGFNSIISEHICGFI-KLGYAMMLAEAISLTHCCINPLIYTLIGEN 386 (417)
T ss_pred --hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccccccHH-HHHHHHHHHHHHHHHHHhhhHHHHHHhCHH
Confidence 01123345577889999999998776643211 11111 1111 1233456778999999999999999
Q ss_pred hHHHHHHhhhhh
Q psy929 360 FQLNLKRARRKA 371 (483)
Q Consensus 360 f~~~~~~~~~~~ 371 (483)
||+.+...+++.
T Consensus 387 FR~~l~~~~~~~ 398 (417)
T PHA02638 387 FRMHLLMIFRNI 398 (417)
T ss_pred HHHHHHHHHHHh
Confidence 999988766443
No 6
>PHA03235 DNA packaging protein UL33; Provisional
Probab=99.97 E-value=1.3e-29 Score=259.08 Aligned_cols=275 Identities=15% Similarity=0.170 Sum_probs=193.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHH
Q psy929 67 PLQALIIGLILLIIIIVTIVGNILVCIAVCIVRKL--RRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCN 144 (483)
Q Consensus 67 ~~~~~~l~~~~~li~v~gl~gN~lvi~vi~~~~~l--rt~~~ill~nLavaDll~~~~~~p~~i~~~~~~~~~~~~~~C~ 144 (483)
.....+..+++.+++++|++||+++++++.+++++ ++.+++|++|||++|++. ++.+|+.+... ...|..|...|+
T Consensus 29 ~~~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~-l~~lP~~i~~~-~~~~~~g~~~Ck 106 (409)
T PHA03235 29 SAARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLT-VFVLPFIMLSN-QGLLSGSVAGCK 106 (409)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHH-HHHHHHHHHhc-CccccCCCCeeh
Confidence 44567789999999999999999999986543332 356689999999999987 57888776431 122334568999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHheeeCCcccceeeccchhhhhhHHHHHHHHHHHHhhHhhhccc-c---cc-CCCc
Q psy929 145 LWVSFDVLSCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGND-Y---RE-DNGV 219 (483)
Q Consensus 145 ~~~~l~~~~~~~S~~~l~~IsidRy~aI~~P~~y~~~~t~~~~~~~i~~iWl~s~l~~~p~~~~~~~~-~---~~-~~~~ 219 (483)
+..++..++..+|++++++||+|||++|++|.+++ ..+++++..+++++|+++++.++|..++.+.. . .. ....
T Consensus 107 ~~~~l~~~~~~~Si~tL~~ISiDRY~aI~~p~~~~-~~~~~~a~~ii~~iWi~sll~s~P~~~~~~~~~~~~~~~~~~~~ 185 (409)
T PHA03235 107 FASLLYYASCTVGFATVALIAADRYRVIHQRTRAR-SSAYRSTYKILGLTWFASLICSGPAPVYTTVVAHDDVDPEAPGY 185 (409)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHeechhhcc-CcccchhhhhHHHHHHHHHHHHHHHHHHHhhhhccccCcCCCCc
Confidence 99999999999999999999999999999998654 45688899999999999999999976543210 1 11 1233
Q ss_pred ccccccccc--------hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHhhhcceeeeeeeccccCCCCCCCCCC
Q psy929 220 SFCSVCQNY--------GYQIYATLGSFYIPLTVMITVYYKIFCAARKIVAEEKRAQSHIIMEHCYLQIHNNSSPATNSN 291 (483)
Q Consensus 220 ~~C~~~~~~--------~~~~~~~~~~~~lPl~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (483)
..|...... .|.+..+++.|++|+++|++||.+|+++++++.+++++ |
T Consensus 186 ~~C~~~~~~~~~~~~~~~y~i~l~i~~f~iPl~im~~~Y~~I~~~l~~~~~~~~~-k----------------------- 241 (409)
T PHA03235 186 ETCVIYFRADQVKTVLSTFKVLLTLVWGIAPVVMMTWFYTFFYRTLKRASYKKRS-R----------------------- 241 (409)
T ss_pred ceeeEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcch-h-----------------------
Confidence 457432211 13334455668999999999999999999875422111 0
Q ss_pred CCccccccccccCCCCccCCCCccccccchhhH----HH-HhhhhhhhhhhhhhhhhhccccchhhhhhhhhhhHHHHHH
Q psy929 292 RGHTHRTSTTSTNTTGRWKPGGCRKWLRTQDRV----QC-KRKNKANKYQEIQESLDLDCTSEYFTRTLEVNDFQLNLKR 366 (483)
Q Consensus 292 ~~~~~~~~~~~~~~~~~w~P~~~~~~~~~~~~~----~~-~~~~k~~k~l~iiv~vflicwlP~~i~~l~~~~f~~~~~~ 366 (483)
...........|.+||+||++..+....... .. ..+...........+.++.|.+++++|.+.++.||+.++.
T Consensus 242 --~~~~v~iivv~F~iCWlPy~v~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~La~~ns~lNPiIY~~~~~~FRk~~~~ 319 (409)
T PHA03235 242 --TLTFVCILLLSFLCLQTPFVAIMIFDSYATLIWPSDCEHINLRDAVSTLSRLVPNLHCLLNPILYAFLGNDFLKRFRQ 319 (409)
T ss_pred --hhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHHHHHhHhHHHHHHhhHHHHHHHHH
Confidence 0112223456799999999987665422110 00 0111112234455677889999999999999999999887
Q ss_pred hhhh
Q psy929 367 ARRK 370 (483)
Q Consensus 367 ~~~~ 370 (483)
.++.
T Consensus 320 ~l~~ 323 (409)
T PHA03235 320 CFRG 323 (409)
T ss_pred HHhh
Confidence 7643
No 7
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.96 E-value=2.2e-28 Score=233.50 Aligned_cols=224 Identities=31% Similarity=0.492 Sum_probs=187.6
Q ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy929 87 GNILVCIAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLSCTASILNLCMISV 166 (483)
Q Consensus 87 gN~lvi~vi~~~~~lrt~~~ill~nLavaDll~~~~~~p~~i~~~~~~~~~~~~~~C~~~~~l~~~~~~~S~~~l~~Isi 166 (483)
||+++++++.++|++|++.++|++|||++|++.++...|..+.....++|..++..|++..++..++..++.++++++++
T Consensus 1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is~ 80 (257)
T PF00001_consen 1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFDDWIFSSFLCRIFGFLFYFSSFSSIFSLVAISI 80 (257)
T ss_dssp HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999999999999888888877777889999999999999999999999999999999
Q ss_pred HHHheeeCCcccceeeccchhhhhhHHHHHHHHHHHHhhHhhhccccccCCCcccccccccc----hhhhhhhhhhhhHH
Q psy929 167 DRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDYREDNGVSFCSVCQNY----GYQIYATLGSFYIP 242 (483)
Q Consensus 167 dRy~aI~~P~~y~~~~t~~~~~~~i~~iWl~s~l~~~p~~~~~~~~~~~~~~~~~C~~~~~~----~~~~~~~~~~~~lP 242 (483)
|||++|++|++|+...+++++..+++++|+++++.++|+.+..+...........|...... .+.....++.+++|
T Consensus 81 dRy~~i~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~p 160 (257)
T PF00001_consen 81 DRYLAICHPLRYRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFVSDGSQSFCFIDFSSSSSQIYFIYFFIVFFILP 160 (257)
T ss_dssp HHHHHHHSHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEESTCCCEEEEESCSSSHHHHHHHHHHHHHTHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999977644333323325567655443 35666677778999
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHhhhcceeeeeeeccccCCCCCCCCCCCCccccccccccCCCCccCCCCccccccchh
Q psy929 243 LTVMITVYYKIFCAARKIVAEEKRAQSHIIMEHCYLQIHNNSSPATNSNRGHTHRTSTTSTNTTGRWKPGGCRKWLRTQD 322 (483)
Q Consensus 243 l~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~P~~~~~~~~~~~ 322 (483)
+++++++|.+|++.+||+.++.+..+. ...
T Consensus 161 ~~~~~~~~~~i~~~~~~~~~~~~~~~~--------------------------------------------------~~~ 190 (257)
T PF00001_consen 161 LIIILICYIRILRKLRRQRKRIKSQSS--------------------------------------------------SSS 190 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTCCHTS--------------------------------------------------HHH
T ss_pred eeeeeeecccccccccccccccccccc--------------------------------------------------ccc
Confidence 999999999999999987543221111 122
Q ss_pred hHHHHhhhhhhhhhhhhhhhhhccccchhhhhhhhhhh
Q psy929 323 RVQCKRKNKANKYQEIQESLDLDCTSEYFTRTLEVNDF 360 (483)
Q Consensus 323 ~~~~~~~~k~~k~l~iiv~vflicwlP~~i~~l~~~~f 360 (483)
+...++|+|.++++.+++++|++||+|+.+..+.....
T Consensus 191 ~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~ 228 (257)
T PF00001_consen 191 RRRSRRERRAARTLLIIVLVFLLCWLPYFILSLLSVFS 228 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccccccccccccccccccccccccCCceeHHHHHHHHc
Confidence 45778899999999999999999999999998774433
No 8
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.95 E-value=9.5e-28 Score=240.87 Aligned_cols=222 Identities=24% Similarity=0.404 Sum_probs=179.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHH
Q psy929 68 LQALIIGLILLIIIIVTIVGNILVCIAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWV 147 (483)
Q Consensus 68 ~~~~~l~~~~~li~v~gl~gN~lvi~vi~~~~~lrt~~~ill~nLavaDll~~~~~~p~~i~~~~~~~~~~~~~~C~~~~ 147 (483)
....+..+++.+++++|++||+++++++.++ ++|++.|+++.|||++|++.++ ..|..+.....++|.+|+..|++..
T Consensus 38 ~~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~-~~~~~~~~~~~~~~~~~~~~C~~~~ 115 (335)
T PHA03087 38 TNSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVM-TLPFQIYYYILFQWSFGEFACKIVS 115 (335)
T ss_pred chhhHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHH-hHHHHHHHHhCCCCCCCcHHHHHHH
Confidence 3556688899999999999999999999887 8899999999999999998754 5676665666778999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHheeeCCcccceeeccchhhhhhHHHHHHHHHHHHhhHhhhccccccCCCccccccccc
Q psy929 148 SFDVLSCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDYREDNGVSFCSVCQN 227 (483)
Q Consensus 148 ~l~~~~~~~S~~~l~~IsidRy~aI~~P~~y~~~~t~~~~~~~i~~iWl~s~l~~~p~~~~~~~~~~~~~~~~~C~~~~~ 227 (483)
++......+|++++++||+|||++|++|++|+...+.+++..+++++|+++++.++|++..... ..+.....|...++
T Consensus 116 ~~~~~~~~~S~~~l~~iaidRy~aI~~p~~~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~~~~~--~~~~~~~~C~~~~~ 193 (335)
T PHA03087 116 GLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPILFVYTT--KKDHETLICCMFYN 193 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhHHHHHHHHHHHHHHhccHhheeee--eccCCCceEEecCC
Confidence 9999999999999999999999999999999988999999999999999999999988665432 11223334543322
Q ss_pred c---hhhh----hhhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHhhhcceeeeeeeccccCCCCCCCCCCCCccccccc
Q psy929 228 Y---GYQI----YATLGSFYIPLTVMITVYYKIFCAARKIVAEEKRAQSHIIMEHCYLQIHNNSSPATNSNRGHTHRTST 300 (483)
Q Consensus 228 ~---~~~~----~~~~~~~~lPl~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (483)
. .+.. ...++.+++|+++++++|.+|.+.++++.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~i~~~l~~~~--------------------------------------- 234 (335)
T PHA03087 194 NKTMNWKLFINFEINIIGMLIPLTILLYCYSKILITLKGIN--------------------------------------- 234 (335)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------------------------------
Confidence 1 1111 12345589999999999999988876542
Q ss_pred cccCCCCccCCCCccccccchhhHHHHhhhhhhhhhhhhhhhhhccccchhhhhhh
Q psy929 301 TSTNTTGRWKPGGCRKWLRTQDRVQCKRKNKANKYQEIQESLDLDCTSEYFTRTLE 356 (483)
Q Consensus 301 ~~~~~~~~w~P~~~~~~~~~~~~~~~~~~~k~~k~l~iiv~vflicwlP~~i~~l~ 356 (483)
..++++|+.|++.+++++|++||.|+.+..+.
T Consensus 235 ------------------------~~~~~~k~~k~l~~iv~~f~i~w~P~~i~~~~ 266 (335)
T PHA03087 235 ------------------------KSKKNKKAIKLVLIIVILFVIFWLPFNVSVFV 266 (335)
T ss_pred ------------------------cchhcchHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 11235678999999999999999999887665
No 9
>KOG2087|consensus
Probab=99.83 E-value=6e-21 Score=183.30 Aligned_cols=279 Identities=21% Similarity=0.259 Sum_probs=206.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CcccchhhH
Q psy929 72 IIGLILLIIIIVTIVGNILVCIAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSG--------KWNFGFMMC 143 (483)
Q Consensus 72 ~l~~~~~li~v~gl~gN~lvi~vi~~~~~lrt~~~ill~nLavaDll~~~~~~p~~i~~~~~~--------~~~~~~~~C 143 (483)
++-+..++++.+.+.||.+|+......+...++..++++|||+||+++++...-+...+.... .|. +...|
T Consensus 26 ~lRi~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~W~-tg~gC 104 (363)
T KOG2087|consen 26 ILRISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAIDWQ-TGLGC 104 (363)
T ss_pred eeeehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHhhh-hcCCC
Confidence 344566788999999999999999988888888899999999999999987666555444321 344 45899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHheeeCCcccceeeccchhhhhhHHHHHHHHHHHHhhHhhhccccccCCCccccc
Q psy929 144 NLWVSFDVLSCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDYREDNGVSFCS 223 (483)
Q Consensus 144 ~~~~~l~~~~~~~S~~~l~~IsidRy~aI~~P~~y~~~~t~~~~~~~i~~iWl~s~l~~~p~~~~~~~~~~~~~~~~~C~ 223 (483)
++.+|+..++.-.|++.++.+++||++.|++|++-.+....+.+..++++.|+.+++.++.|+++.. . ......|.
T Consensus 105 ~~aGflavFASElSv~~LT~itlEr~l~i~~p~~~~~~~~lr~~~~ill~~wl~~~l~A~~Pl~g~s---~-Y~~~~vCl 180 (363)
T KOG2087|consen 105 PVAGFLAVFASELSVFLLTLITLERWLSITYPFRLDRKAKLRPLVLILLLGWLFAFLMALLPLFGIS---S-YGASSVCL 180 (363)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhheeccccCCCcccccHHHHHHHHHHHHHHHHHhccccCCC---C-Ccccceee
Confidence 9999999999999999999999999999999999777777777999999999999999999987622 1 12234564
Q ss_pred cc-----ccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHhhhcceeeeeeeccccCCCCCCCCCC-CCcccc
Q psy929 224 VC-----QNYGYQIYATLGSFYIPLTVMITVYYKIFCAARKIVAEEKRAQSHIIMEHCYLQIHNNSSPATNSN-RGHTHR 297 (483)
Q Consensus 224 ~~-----~~~~~~~~~~~~~~~lPl~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 297 (483)
+. .+..|....++....+.+++|+++|++|+..+++..... +.. -....+
T Consensus 181 PL~~~~~~s~g~y~~~~l~~N~lafiiia~~Y~~iy~~l~~~~~~~------------------------~~~~~~~akr 236 (363)
T KOG2087|consen 181 PLHIEEPLSTGYYLVALLGLNLLAFIIIAFSYGKIYCSLRKGDLSA------------------------TLISTSVAKR 236 (363)
T ss_pred ecccCCccchhHHHHHHHHHHHHHHHHHHHHhhhhheeeecCCCcc------------------------ccchhhhhhC
Confidence 32 223356666777789999999999999999988642111 111 123335
Q ss_pred ccccccCCCCccCCCCccccccchhhHHHHhhhhhhhhhhhhhhhhhccccchhhhhhhhhhhHHHHHHhhhhhhheeee
Q psy929 298 TSTTSTNTTGRWKPGGCRKWLRTQDRVQCKRKNKANKYQEIQESLDLDCTSEYFTRTLEVNDFQLNLKRARRKALLFVSL 377 (483)
Q Consensus 298 ~~~~~~~~~~~w~P~~~~~~~~~~~~~~~~~~~k~~k~l~iiv~vflicwlP~~i~~l~~~~f~~~~~~~~~~~~~~~~~ 377 (483)
....+...-+||.|-+.+++....+-.....+ ..| ..++.+.=+..++++++|.+..+.|++.++..+.+....+..
T Consensus 237 ~a~LvfTd~icw~Pi~f~~~~al~~~~li~~~--~sk-~llv~flPlns~~NP~LYa~fT~~fk~d~~~l~~k~~~~k~~ 313 (363)
T KOG2087|consen 237 MAFLVFTDCICWCPIAFFKFSALIGVELISVS--YSK-WLLVFFLPLNSCLNPFLYAFFTPVFKEDLFLLLSKVGLCKNR 313 (363)
T ss_pred eeEEEEccccccCchheeeeHHhcCCcccChh--hce-eEEEEEEEcccccCchhHHHcCHHHHHHHHHHHhhcchhhhH
Confidence 55667888899999999988554432211111 111 122222334889999999999999999999988777666555
Q ss_pred eeccc
Q psy929 378 SQLGT 382 (483)
Q Consensus 378 ~~~~~ 382 (483)
.....
T Consensus 314 ~~~~~ 318 (363)
T KOG2087|consen 314 ASKYK 318 (363)
T ss_pred HHHhc
Confidence 55555
No 10
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.75 E-value=3.5e-18 Score=164.63 Aligned_cols=170 Identities=22% Similarity=0.375 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHH
Q psy929 82 IVTIVGNILVCIAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLSCTASILNL 161 (483)
Q Consensus 82 v~gl~gN~lvi~vi~~~~~lrt~~~ill~nLavaDll~~~~~~p~~i~~~~~~~~~~~~~~C~~~~~l~~~~~~~S~~~l 161 (483)
++|++||+.+++++.++|++|++.+++++.+|++|++.+...+|..+... ++.......|-...+...++..++...+
T Consensus 2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~~--~~~~i~~~~Cf~~~~~~~f~~~~qs~~~ 79 (257)
T PF10320_consen 2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFLF--RDHQITRSECFWQIFFYIFFQCAQSVIM 79 (257)
T ss_pred EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHHH--hheeccHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999888887765333 2334567789999999999999999999
Q ss_pred HHHHHHHHheeeCCcccceeeccchhhhhhHHHHHHHHHHHHhhHhhhccccccCCCcccccccccc---hhhhhhhhhh
Q psy929 162 CMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDYREDNGVSFCSVCQNY---GYQIYATLGS 238 (483)
Q Consensus 162 ~~IsidRy~aI~~P~~y~~~~t~~~~~~~i~~iWl~s~l~~~p~~~~~~~~~~~~~~~~~C~~~~~~---~~~~~~~~~~ 238 (483)
.+|++||++||+.|++|+.+.+.+..........+.+.......++ +..++....|...... .+.++...
T Consensus 80 l~i~iDr~iaV~~P~~Y~~~~~~~y~~~~~~~~~~~s~~~~~~~~~-----~~~~~~~~~C~pp~a~~~~~~~~~~~~-- 152 (257)
T PF10320_consen 80 LAIAIDRLIAVCFPLRYRTISTRKYLIILLIFPVIYSIFFTVIGFL-----YRDDETIVICNPPLAFHGTASQIWSYS-- 152 (257)
T ss_pred HHHHhhheeeEeehhhhhhcccccchhhHhHHHHHHHHHHHhheeE-----ecCCcccccCCCccccCccHHHHHHHH--
Confidence 9999999999999999999988886666556666666555443322 2222345567654322 22222111
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh
Q psy929 239 FYIPLTVMITVYYKIFCAARKI 260 (483)
Q Consensus 239 ~~lPl~ii~~~y~~I~~~lr~~ 260 (483)
.++.-+++++.|...+..++++
T Consensus 153 ~~~inv~tvivY~i~~~~~~~k 174 (257)
T PF10320_consen 153 NIIINVITVIVYIITIIIFKRK 174 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 1122233345566666655554
No 11
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.54 E-value=3.3e-13 Score=131.54 Aligned_cols=220 Identities=19% Similarity=0.220 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHH-HHHHHHHHHHHHH
Q psy929 79 IIIIVTIVGNILVCIAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCN-LWVSFDVLSCTAS 157 (483)
Q Consensus 79 li~v~gl~gN~lvi~vi~~~~~lrt~~~ill~nLavaDll~~~~~~p~~i~~~~~~~~~~~~~~C~-~~~~l~~~~~~~S 157 (483)
+++++|++.|.++++.+.+.+++|++.+++-.+.|++|.+.++..+-........+.....+.... +.+.....+...+
T Consensus 2 ~~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~~~~~~~~~~~s~~~g~~~~~~y~~~ 81 (274)
T PF10328_consen 2 LISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFLFWVVPMTLLDISFLPSSLNSIIFGFIGMFCYFIG 81 (274)
T ss_pred eeeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCchHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999999998754443333333332223333333 3467788888889
Q ss_pred HHHHHHHHHHHHheeeCCcccceeeccchhhhhhHHHHHHHHHHHHhhHhhhccccccCCCcc--------cccccccch
Q psy929 158 ILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDYREDNGVS--------FCSVCQNYG 229 (483)
Q Consensus 158 ~~~l~~IsidRy~aI~~P~~y~~~~t~~~~~~~i~~iWl~s~l~~~p~~~~~~~~~~~~~~~~--------~C~~~~~~~ 229 (483)
.++..+||++|++||..|.+|+.+.+.+.+..+++++|++++....+..+..++...++.... .|..
T Consensus 82 ~~~~~liaiNRf~ai~fP~~y~~~fs~~~T~~~i~~~~~~~~~~~~~~~~~~~C~~~y~~~~~~~~~~~~~~C~~----- 156 (274)
T PF10328_consen 82 PLSHLLIAINRFCAIFFPFKYKKIFSFKNTIILIAFIWLLSIIISTILYFPDGCYFYYDPETWSWSYPTDPPCGN----- 156 (274)
T ss_pred HHHHHHHHHHHHheeeeHHHHHhHcCccceehhhhHHHHHHHHHHHHhhhcCCCcceeccceeeeecCCCCccch-----
Confidence 999999999999999999999999999999999999999999887776554444333332221 2321
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHhhhcceeeeeeeccccCCCCCCCCCCCCccccccccccCCCCcc
Q psy929 230 YQIYATLGSFYIPLTVMITVYYKIFCAARKIVAEEKRAQSHIIMEHCYLQIHNNSSPATNSNRGHTHRTSTTSTNTTGRW 309 (483)
Q Consensus 230 ~~~~~~~~~~~lPl~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 309 (483)
+..+.......+-.+++.++++.++.++++..++.....
T Consensus 157 ~~~~~~~~~~~~~~~~~~~lni~t~ikl~~~~~~~~~~~----------------------------------------- 195 (274)
T PF10328_consen 157 YSWYFDFYKNFILVIISNILNIITFIKLRKFRKKISVSS----------------------------------------- 195 (274)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc-----------------------------------------
Confidence 222222222344456677788888888887544330000
Q ss_pred CCCCccccccchhhHHHHhhhhhhhhhhhhhhhhhccccchhhhh
Q psy929 310 KPGGCRKWLRTQDRVQCKRKNKANKYQEIQESLDLDCTSEYFTRT 354 (483)
Q Consensus 310 ~P~~~~~~~~~~~~~~~~~~~k~~k~l~iiv~vflicwlP~~i~~ 354 (483)
...++.+++|.+..+...+.-.++++.++-+++..
T Consensus 196 ----------~~s~~r~rke~~f~~Qs~~Q~~~~~i~~~~~~~~~ 230 (274)
T PF10328_consen 196 ----------SESKKRRRKEIRFFIQSFIQDLLYLIDLIFYFFIP 230 (274)
T ss_pred ----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11245777899999999999999998887776653
No 12
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=99.36 E-value=1.1e-11 Score=123.60 Aligned_cols=229 Identities=18% Similarity=0.135 Sum_probs=160.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---C--c----ccchhhHHHHHH
Q psy929 79 IIIIVTIVGNILVCIAVCIVRKLRR-PCNYLLVSLAVSDLCVAILVMPMALLYEVSG---K--W----NFGFMMCNLWVS 148 (483)
Q Consensus 79 li~v~gl~gN~lvi~vi~~~~~lrt-~~~ill~nLavaDll~~~~~~p~~i~~~~~~---~--~----~~~~~~C~~~~~ 148 (483)
++.++|+++|.+-++++. +|.+|+ +.|.++..+|++|++..+..++..+...... + + ............
T Consensus 5 ~~~~~g~~~N~~h~~VLt-rk~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~ 83 (318)
T PF10324_consen 5 ILSIFGLFINIFHLIVLT-RKSMRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMES 83 (318)
T ss_pred EEeHHHHHHHHHHhhhcC-ChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHH
Confidence 456899999999998887 567776 7899999999999999888877766444332 1 1 111123334456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHheeeCCcccc--eeeccchhhhhhHHHHHHHHHHHHhhHhhhccccc--cCCCcccccc
Q psy929 149 FDVLSCTASILNLCMISVDRYYAITKPLEYG--VKRTPKRMILCVVFVWLGAACISLPPLIVLGNDYR--EDNGVSFCSV 224 (483)
Q Consensus 149 l~~~~~~~S~~~l~~IsidRy~aI~~P~~y~--~~~t~~~~~~~i~~iWl~s~l~~~p~~~~~~~~~~--~~~~~~~C~~ 224 (483)
+...+...|.|..++||+.|+++|.+|+..+ .+.+++.+..++.++++++.+++.+.++...-... .......|..
T Consensus 84 l~~~~~~~S~WL~V~mA~iR~l~i~~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~~~~~~~~p~~~C~~ 163 (318)
T PF10324_consen 84 LSDIFRRISIWLGVLMALIRYLSIKFPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIVEVSDPWVPPPNCSG 163 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEEeccccccCCCceee
Confidence 7888889999999999999999999998753 45678888889999999999999987654431111 1112234541
Q ss_pred cc----cch-------------------hhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHhhhcceeeeeeecccc
Q psy929 225 CQ----NYG-------------------YQIYATLGSFYIPLTVMITVYYKIFCAARKIVAEEKRAQSHIIMEHCYLQIH 281 (483)
Q Consensus 225 ~~----~~~-------------------~~~~~~~~~~~lPl~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~ 281 (483)
.. ... +.....++.-++|.++..++.+.+.+.+||..+++++..+.
T Consensus 164 ~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~gi~~kiiP~il~~ilti~Li~~Lrk~~~~r~~~~~~----------- 232 (318)
T PF10324_consen 164 FPENYTFPRYMLNISELFTENDCLFFRIYFFIDGIFFKIIPCILLPILTILLIIELRKAKKRRKKLSSS----------- 232 (318)
T ss_pred ccccccccccchhhhhhhhhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHhccHhhhccccc-----------
Confidence 10 000 11111222358899999999999999998875544332211
Q ss_pred CCCCCCCCCCCCccccccccccCCCCccCCCCccccccchhhHHHHhhhhhhhhhhhhhhhhhccccchhhhhhhhhhhH
Q psy929 282 NNSSPATNSNRGHTHRTSTTSTNTTGRWKPGGCRKWLRTQDRVQCKRKNKANKYQEIQESLDLDCTSEYFTRTLEVNDFQ 361 (483)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~P~~~~~~~~~~~~~~~~~~~k~~k~l~iiv~vflicwlP~~i~~l~~~~f~ 361 (483)
..+++.+.++++..+++.|+++-+|..+..++...+.
T Consensus 233 -------------------------------------------~~~~~~~tt~li~~~ti~f~i~e~p~gi~~~~~~~~~ 269 (318)
T PF10324_consen 233 -------------------------------------------KSKKSDRTTKLILFMTISFLISELPQGIIFLLESFFE 269 (318)
T ss_pred -------------------------------------------ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1235678899999999999999999999988855544
Q ss_pred H
Q psy929 362 L 362 (483)
Q Consensus 362 ~ 362 (483)
+
T Consensus 270 ~ 270 (318)
T PF10324_consen 270 E 270 (318)
T ss_pred h
Confidence 3
No 13
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.14 E-value=5.4e-10 Score=109.22 Aligned_cols=181 Identities=15% Similarity=0.234 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHHHHhcCC----CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCC--cccchhhHHHHHHHHHH
Q psy929 81 IIVTIVGNILVCIAVCIVRK----LRRPCNYLLVSLAVSDLCVAILVMPMALLYEV--SGK--WNFGFMMCNLWVSFDVL 152 (483)
Q Consensus 81 ~v~gl~gN~lvi~vi~~~~~----lrt~~~ill~nLavaDll~~~~~~p~~i~~~~--~~~--~~~~~~~C~~~~~l~~~ 152 (483)
+++.+.-...+++++.+.|+ .+++.+-++.+.++||++..+........... ..+ ...++..-+........
T Consensus 5 ~~~tlply~~il~~l~~~r~~~~~~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~ 84 (283)
T PF10323_consen 5 SIVTLPLYIFILYCLLKLRKRSKTFKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTYYAAIYYNIAYY 84 (283)
T ss_pred EeehHHHHHHHHHHHHHcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHH
Confidence 34556666777777776554 45788999999999999986654333322211 001 11222334555556677
Q ss_pred HHHHHHHHHHHHHHHHHheeeCCc-ccceeeccchhhhhhHHHHHHHHHHHHhhHhhhccccccCCCcccccccccchhh
Q psy929 153 SCTASILNLCMISVDRYYAITKPL-EYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDYREDNGVSFCSVCQNYGYQ 231 (483)
Q Consensus 153 ~~~~S~~~l~~IsidRy~aI~~P~-~y~~~~t~~~~~~~i~~iWl~s~l~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~ 231 (483)
.........+.+|+.||.||++|. ++..+.++.+...++++-|+.+++.++|.+......+....+...-.+.......
T Consensus 85 ~~~~~~~gi~lls~nR~~ai~~P~~~~~~~~~~~~~~~i~~i~wi~p~li~~~~~~~~~~~f~~~~~~~~~~d~~~~~~~ 164 (283)
T PF10323_consen 85 FLYIQCIGIVLLSLNRYLAICFPTSRHTKFWQPAKIWIIILIQWIPPLLISLPFFFDTDFYFDNEENMSLFVDPEFIQRN 164 (283)
T ss_pred HHHHHHHhHHHHHHhhhheEEeecHHHhhhccccchhheeeeeehhhhhheeeeeccCceeeecccceeeecCHHHHHHH
Confidence 778888889999999999999999 7888889999999999999999999998544332111111111111111111122
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q psy929 232 IYATLGSFYIPLTVMITVYYKIFCAARKIV 261 (483)
Q Consensus 232 ~~~~~~~~~lPl~ii~~~y~~I~~~lr~~~ 261 (483)
.........+-.+..+++|..++..+||+.
T Consensus 165 ~~~~~~~~~~~cv~~iv~Y~~i~~~iRk~~ 194 (283)
T PF10323_consen 165 FLIAFIFVSVTCVICIVCYGIIFIFIRKRN 194 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 222233345566788899999999999765
No 14
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=99.13 E-value=9.3e-09 Score=101.38 Aligned_cols=196 Identities=14% Similarity=0.132 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHH
Q psy929 70 ALIIGLILLIIIIVTIVGNILVCIAVCI---VRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLW 146 (483)
Q Consensus 70 ~~~l~~~~~li~v~gl~gN~lvi~vi~~---~~~lrt~~~ill~nLavaDll~~~~~~p~~i~~~~~~~~~~~~~~C~~~ 146 (483)
..+..++..+.+++|++||+.++.+.+. +++.-++.|..+.+||++.++................+....+..++..
T Consensus 6 ~~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (303)
T PF05296_consen 6 EIIFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFFFPNIYFSENVYKII 85 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHHH
Confidence 4456778889999999999999998876 3333468899999999999998766655555555555555667789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHheeeCCcccc----eeeccchhhhhhHHHHHHHHHHHHhhHhhhccccccCCCcccc
Q psy929 147 VSFDVLSCTASILNLCMISVDRYYAITKPLEYG----VKRTPKRMILCVVFVWLGAACISLPPLIVLGNDYREDNGVSFC 222 (483)
Q Consensus 147 ~~l~~~~~~~S~~~l~~IsidRy~aI~~P~~y~----~~~t~~~~~~~i~~iWl~s~l~~~p~~~~~~~~~~~~~~~~~C 222 (483)
.++..+....|.|..+.+++--++.|+..-+.- +++=.+....++.+.+++++...++...... .+........+
T Consensus 86 ~~~~~f~~~~s~W~tt~LsvfYcvKI~~fs~~~Fl~LK~rI~~~v~~lLl~s~l~s~~~~~~~~~~~~-~~~~~~~~~~~ 164 (303)
T PF05296_consen 86 DFLWMFSNSSSLWFTTWLSVFYCVKIANFSHPFFLWLKRRISKVVPWLLLGSLLISFLNLLSIPLFID-NHINNNNTNNS 164 (303)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHheeeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhee-eeeccccccCC
Confidence 999999999999999999999999999754311 1111122334567777777733332222222 11110111111
Q ss_pred cc------cccch--hhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHh
Q psy929 223 SV------CQNYG--YQIYATLGSFYIPLTVMITVYYKIFCAARKIVAEEKR 266 (483)
Q Consensus 223 ~~------~~~~~--~~~~~~~~~~~lPl~ii~~~y~~I~~~lr~~~~~~~~ 266 (483)
.+ ..... +......+..++|+++++++...+...++||.++.++
T Consensus 165 ~N~t~~~~~~~~~~~~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~~ 216 (303)
T PF05296_consen 165 RNSTSNFQESKSSYFYFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQK 216 (303)
T ss_pred CcceEEeecchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 11 11111 1222233668999999999999999999999876654
No 15
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=99.08 E-value=1.7e-08 Score=98.73 Aligned_cols=128 Identities=22% Similarity=0.343 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHH
Q psy929 72 IIGLILLIIIIVTIVGNILVCIAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDV 151 (483)
Q Consensus 72 ~l~~~~~li~v~gl~gN~lvi~vi~~~~~lrt~~~ill~nLavaDll~~~~~~p~~i~~~~~~~~~~~~~~C~~~~~l~~ 151 (483)
.+.++..+..+++++|.++++..+++.|++|++.+-++.-++++|++..+..+.... ..+..-++..|.+++++..
T Consensus 8 ~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~~----~~~~~~~s~lC~~Qafliq 83 (303)
T PF05462_consen 8 TLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMTL----SPSAGENSFLCQFQAFLIQ 83 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHh----cccCCCCCcchhhHhHHHH
Confidence 455666777899999999999999999999999999999999999987655433221 1222334678999999999
Q ss_pred HHHHHHHHHHHHHHHHHHheeeCCcccceeeccchhhhhhHHHHHHHHHHHHhhHh
Q psy929 152 LSCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLI 207 (483)
Q Consensus 152 ~~~~~S~~~l~~IsidRy~aI~~P~~y~~~~t~~~~~~~i~~iWl~s~l~~~p~~~ 207 (483)
++..++.+-.++||++=|+.+++... -..+.-+.-.+++|.++++.++.++.
T Consensus 84 ~f~~as~lWt~~iA~nly~~~~~~~~----~~~k~e~~Y~l~~wGiPli~a~i~l~ 135 (303)
T PF05462_consen 84 FFMLASFLWTLCIAFNLYLTFVKRYD----ELEKLEKYYHLVCWGIPLIPAVIPLI 135 (303)
T ss_pred HhhHHHHHHHHHHHHHhhheeEEcCc----cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987532 13444566778899999998887654
No 16
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=98.81 E-value=3.1e-07 Score=84.79 Aligned_cols=177 Identities=16% Similarity=0.187 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHHHh-cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHH
Q psy929 82 IVTIVGNILVCIAVCI-VRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLSCTASILN 160 (483)
Q Consensus 82 v~gl~gN~lvi~vi~~-~~~lrt~~~ill~nLavaDll~~~~~~p~~i~~~~~~~~~~~~~~C~~~~~l~~~~~~~S~~~ 160 (483)
.+++++=+.+++.+.. .++++.-.+-++.||.++|++-++..+...+.....+.-.-+...|..++++..+...++-+.
T Consensus 12 ~lSlls~~~~l~~~~~~~~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~~i~~~s~~C~aqGf~~q~g~~~sd~~ 91 (201)
T PF11710_consen 12 ALSLLSSLAVLYLFFFITYRRRSFRHQLILNLLLADFIQALAFLISPIRWLARGGIIAPSPFCQAQGFFLQVGDEASDLW 91 (201)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeCCCCchhhhHHHHHHHHHHHHHH
Confidence 3334333333333333 244455556799999999999987665544445544444456789999999999999999999
Q ss_pred HHHHHHHHHheeeCCcc----cce-----eeccchhhhhhHHHHHHHHHHHHhhHhhhccccccCCCcccccccccc-hh
Q psy929 161 LCMISVDRYYAITKPLE----YGV-----KRTPKRMILCVVFVWLGAACISLPPLIVLGNDYREDNGVSFCSVCQNY-GY 230 (483)
Q Consensus 161 l~~IsidRy~aI~~P~~----y~~-----~~t~~~~~~~i~~iWl~s~l~~~p~~~~~~~~~~~~~~~~~C~~~~~~-~~ 230 (483)
..+||+.-|+.|.+|-. .+. ...+.....+..++|++....+. ...+ ...+.+....|-...+. .+
T Consensus 92 ilaIAihT~l~v~~~~~~~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~la~---i~~~-~~~Y~~~g~WCWi~~~~~~~ 167 (201)
T PF11710_consen 92 ILAIAIHTFLIVFRPNWKRKRSKNVEGGLYPYRYWVWVIWILVPLLLASLAF---IGLG-GPGYGPAGAWCWIPSRYEWY 167 (201)
T ss_pred HHHHHHHHHHHHhcCccccccccccccceEEeeeeeehHHHHHHHHHHHHHH---hccc-cCcccccCcEEEECCCcHHH
Confidence 99999999999999922 010 01111122222344444333332 2211 23345556678544433 22
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhH
Q psy929 231 QIYATLGSFYIPLTVMITVYYKIFCAARKIVA 262 (483)
Q Consensus 231 ~~~~~~~~~~lPl~ii~~~y~~I~~~lr~~~~ 262 (483)
.+...-+--++-..++++.|..|+..+||+.+
T Consensus 168 Rl~l~y~~~~~~~~~~i~iY~~if~~lrr~~~ 199 (201)
T PF11710_consen 168 RLWLHYIWRFIIIFAIIIIYIAIFFYLRRRIR 199 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 22222222344566777889999999998754
No 17
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=98.43 E-value=9.4e-06 Score=80.01 Aligned_cols=186 Identities=16% Similarity=0.185 Sum_probs=112.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCcccchhhHHH-
Q psy929 68 LQALIIGLILLIIIIVTIVGNILVCIAVCIVRKLRRPCNYLLVSLAVSDLCVAILV-MPMALLYEVSGKWNFGFMMCNL- 145 (483)
Q Consensus 68 ~~~~~l~~~~~li~v~gl~gN~lvi~vi~~~~~lrt~~~ill~nLavaDll~~~~~-~p~~i~~~~~~~~~~~~~~C~~- 145 (483)
..+.++++.+.+.+++-.+....+++++.+++..|.+.+-++.-||+.|++..... +-.. ..... |...|..
T Consensus 30 ~~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~~si~tG-~l~i~-----G~vfC~~P 103 (313)
T PF10321_consen 30 VKRPILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFINSIITG-ILAIF-----GAVFCSYP 103 (313)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHhhhhhhh-HHHhc-----CccccCCc
Confidence 34567888888999999999999999999887778899999999999999885432 2111 11111 2233333
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHheeeCCcccceeeccchhhhhhHHHHHHHHHHH--HhhHhhhccc--cccC
Q psy929 146 -----WVSFDVLSCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACIS--LPPLIVLGND--YRED 216 (483)
Q Consensus 146 -----~~~l~~~~~~~S~~~l~~IsidRy~aI~~P~~y~~~~t~~~~~~~i~~iWl~s~l~~--~p~~~~~~~~--~~~~ 216 (483)
.+.+...+-.++...-..++++|...+..+.........+++..++.+..+.++... .++..+.... ..++
T Consensus 104 ~~~~i~G~~~~~~W~~~c~~~i~LainR~~~l~~~~~~~~~F~g~~~~~~l~~~~iY~~y~~~fT~pv~Fns~~~sw~fD 183 (313)
T PF10321_consen 104 RFIYIMGCIALGSWCGSCIICILLAINRCCELNFPFKLKFLFEGKRTYIVLFLPIIYGFYFSFFTPPVLFNSEYMSWFFD 183 (313)
T ss_pred hHhhhhhccchhhHHHHHHHHHHHHHHHHHHHhcchhhHHhhcCceEEeeehhHHHHHHHHHHHcCcccCCCCcceEecC
Confidence 333445556677888889999999999998776666666666554443333332222 3333322111 1111
Q ss_pred CCcccccccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q psy929 217 NGVSFCSVCQNYGYQIYATLGSFYIPLTVMITVYYKIFCAARKIV 261 (483)
Q Consensus 217 ~~~~~C~~~~~~~~~~~~~~~~~~lPl~ii~~~y~~I~~~lr~~~ 261 (483)
.... .......|.-..-....++-.+++..+|+.+...++++.
T Consensus 184 P~i~--~g~~~~~Y~N~~~~~nN~~~~~~t~~lY~~l~~~l~~k~ 226 (313)
T PF10321_consen 184 PMIF--EGKSPELYSNIPHTFNNIIVVICTTFLYIYLCYYLIKKS 226 (313)
T ss_pred cccc--CCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1110 000111233222233334456677888999998888763
No 18
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=98.40 E-value=2.6e-05 Score=76.47 Aligned_cols=188 Identities=16% Similarity=0.118 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeC
Q psy929 106 NYLLVSLAVSDLCVAILVMPMALLYEVSGKW-----------NFGFMMCNLWVSFDVLSCTASILNLCMISVDRYYAITK 174 (483)
Q Consensus 106 ~ill~nLavaDll~~~~~~p~~i~~~~~~~~-----------~~~~~~C~~~~~l~~~~~~~S~~~l~~IsidRy~aI~~ 174 (483)
.-.+..||+||++.++-.+.....+....+. ......|.....-..++..++.+-+.+-|+|-|+.+.+
T Consensus 68 ~rIl~~la~aDlLaclGVivRS~vWl~~p~~~~s~s~~~~~d~wp~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~~ 147 (405)
T PF02101_consen 68 RRILFWLAVADLLACLGVIVRSSVWLGFPNFIDSISDVNGTDIWPAAFCVGSSMWIQLFYSATFWWTFCYAVDVYLVIRR 147 (405)
T ss_pred chhHHHHHHHHHHhhhhHHHHhhhhhcCCcccccccCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeec
Confidence 3578899999999987766665554433211 12447898888777788889999999999999998754
Q ss_pred CcccceeeccchhhhhhHHHHHHHHHHHHhhHhhhccccccCCCcccccccccchhhhhhhhhhhhHHHHHHHHHHHHHH
Q psy929 175 PLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDYREDNGVSFCSVCQNYGYQIYATLGSFYIPLTVMITVYYKIF 254 (483)
Q Consensus 175 P~~y~~~~t~~~~~~~i~~iWl~s~l~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~lPl~ii~~~y~~I~ 254 (483)
-- .......-=.++|.++.++..-...... ......|.........-+ +...+|+++.++.+=.++
T Consensus 148 ~a------g~~~~~lYH~~aWgl~~lL~~~Gl~~Ly-----~Ps~~~Ce~~l~~alphY---vttY~PlllVlvaNPiLy 213 (405)
T PF02101_consen 148 SA------GRSTIWLYHMMAWGLPALLCAEGLAMLY-----YPSISRCESGLEHALPHY---VTTYIPLLLVLVANPILY 213 (405)
T ss_pred cC------CCcchhHHHHHHHHHHHHHHHhccceee-----cCCHHhhhhhhhhcchhH---HHHHHHHHHHHHhccHHH
Confidence 21 1122234446789999888876544321 222335643322211111 123456666665555555
Q ss_pred HHHHhhhHHHHhhhcceeeeeeeccccCCCCCCCCCCCCccccccccccCCCCccCCCCccccccchhhHHHHhhhhhhh
Q psy929 255 CAARKIVAEEKRAQSHIIMEHCYLQIHNNSSPATNSNRGHTHRTSTTSTNTTGRWKPGGCRKWLRTQDRVQCKRKNKANK 334 (483)
Q Consensus 255 ~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~P~~~~~~~~~~~~~~~~~~~k~~k 334 (483)
++.-+.....-+.+... ...+.++....+.+
T Consensus 214 ~~a~~~V~~~lk~r~g~-------------------------------------------------yT~~ER~l~~~IK~ 244 (405)
T PF02101_consen 214 IKAVRAVASLLKGRQGI-------------------------------------------------YTENERRLGAQIKI 244 (405)
T ss_pred HHHHHHHHHHHhhcccc-------------------------------------------------ccHHHHHHHHHHHH
Confidence 44433222221211111 11345555667777
Q ss_pred hhhhhhhhhhccccchhhhhhh
Q psy929 335 YQEIQESLDLDCTSEYFTRTLE 356 (483)
Q Consensus 335 ~l~iiv~vflicwlP~~i~~l~ 356 (483)
..+.|.++|.+||+|-.+..++
T Consensus 245 kFf~I~lVF~iCWlpNIINg~L 266 (405)
T PF02101_consen 245 KFFKIMLVFYICWLPNIINGSL 266 (405)
T ss_pred HHHHHHHHHHHHhhhhhHhHHH
Confidence 7889999999999998776654
No 19
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=98.23 E-value=0.00014 Score=72.56 Aligned_cols=127 Identities=12% Similarity=-0.038 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHH---HHHhc---C-CcccchhhHHHH
Q psy929 74 GLILLIIIIVTIVGNILVCIAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMAL---LYEVS---G-KWNFGFMMCNLW 146 (483)
Q Consensus 74 ~~~~~li~v~gl~gN~lvi~vi~~~~~lrt~~~ill~nLavaDll~~~~~~p~~i---~~~~~---~-~~~~~~~~C~~~ 146 (483)
-++-++++++|+..++..++.+..++..|...-+++....++.++.++..+.... ..... + +.......|...
T Consensus 20 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~~~~Cd~~~~~~~C~~l 99 (324)
T PF10292_consen 20 LIFNLLLSIIAFPVIIYALWKIRNSKLFHFNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFPDDPCDMIPSTYRCFIL 99 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccchhHHHHH
Confidence 3456678888898899988888888888888888898888888888754333322 22222 1 334466789888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHheeeCCcccceeeccchhhhhhHHHHHHHHHH
Q psy929 147 VSFDVLSCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACI 201 (483)
Q Consensus 147 ~~l~~~~~~~S~~~l~~IsidRy~aI~~P~~y~~~~t~~~~~~~i~~iWl~s~l~ 201 (483)
-....++......+..++++||++|-++.-+|... ++.-...+..+-|++++..
T Consensus 100 R~~~~~~~~~~~~t~v~l~IER~iAT~~~~~YE~~-~~~~Gi~l~~~qi~is~~~ 153 (324)
T PF10292_consen 100 RIPYNFGLFLVSFTTVSLVIERTIATFFSKSYEKS-GKWLGILLAFFQILISLLI 153 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCC-CccHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999888754 2232233444445554443
No 20
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=98.22 E-value=0.00015 Score=71.36 Aligned_cols=128 Identities=19% Similarity=0.245 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------cccchhh
Q psy929 75 LILLIIIIVTIVGNILVCIAVCIVRK-LRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGK-----------WNFGFMM 142 (483)
Q Consensus 75 ~~~~li~v~gl~gN~lvi~vi~~~~~-lrt~~~ill~nLavaDll~~~~~~p~~i~~~~~~~-----------~~~~~~~ 142 (483)
+++.+.+++|++.|.++++.+.++.. .-+.-.+++.|-|+.|++.++...-.. .-....+ ..+|...
T Consensus 3 i~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~~~q-~R~i~~~~~~~~~~~GpC~~~~~~~ 81 (292)
T PF10317_consen 3 IYHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAFLTQ-PRIIPNGTSIAVISYGPCRYFGPWF 81 (292)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhccCCCCcEEEEeeecceecCcHH
Confidence 35678899999999999998886443 334567899999999999875443322 2222211 2357788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHheeeCCcccceeeccchhhhhhHHHHHHHHHHHHhhHhh
Q psy929 143 CNLWVSFDVLSCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIV 208 (483)
Q Consensus 143 C~~~~~l~~~~~~~S~~~l~~IsidRy~aI~~P~~y~~~~t~~~~~~~i~~iWl~s~l~~~p~~~~ 208 (483)
|.....+...+...+.+++.+--..||..+.++.. ++++...++.+.+..++...+...+.
T Consensus 82 C~~~y~~~~~~~~~s~~~i~~sf~yRy~iL~~~~~-----~~~~~i~~~~l~~~p~~~~~i~~~~~ 142 (292)
T PF10317_consen 82 CFFCYHIMLHFSIHSGWSIILSFYYRYYILRNPSP-----SRKRIIFICILIYIPSFSMLIFFFFS 142 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----chhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 98888888888899999999999999999987633 56677777888888888777655443
No 21
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=98.08 E-value=7e-06 Score=78.44 Aligned_cols=162 Identities=17% Similarity=0.214 Sum_probs=101.7
Q ss_pred CCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeCCccc
Q psy929 100 KLRRPCNYLLVSLAVSDLCVAIL-VMPMALLYEVSGKWNFGFMMCNLWVSFDVLSCTASILNLCMISVDRYYAITKPLEY 178 (483)
Q Consensus 100 ~lrt~~~ill~nLavaDll~~~~-~~p~~i~~~~~~~~~~~~~~C~~~~~l~~~~~~~S~~~l~~IsidRy~aI~~P~~y 178 (483)
+..+|+|..+.+||+|++++.+. .+|........ + .+++..||+..|+.-++-..|+.+.+++++-.-+.|.-.-..
T Consensus 6 ~r~kp~dlIl~hLa~aN~lvLl~rGip~~~~~~~~-~-~~~d~gCK~v~Y~~RV~RglSictTCLLSvfQAItISP~~s~ 83 (265)
T PF03402_consen 6 HRLKPIDLILIHLALANILVLLSRGIPQTMAFFGW-K-FFDDIGCKIVFYIYRVARGLSICTTCLLSVFQAITISPSNSR 83 (265)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHhhHHHHHHHhhc-c-cCCCceeeeeeeehHHhchhhHHhhhHHHHHhhEEEecCCch
Confidence 45678999999999999988654 55643332222 2 468899999999999999999999999999887777643211
Q ss_pred ---ceeeccchhhhhhHHHHHHHHHHHHhhHhhh--ccccc---cCCCcccccccccc--hhhhhhhhh--hhhHHHHHH
Q psy929 179 ---GVKRTPKRMILCVVFVWLGAACISLPPLIVL--GNDYR---EDNGVSFCSVCQNY--GYQIYATLG--SFYIPLTVM 246 (483)
Q Consensus 179 ---~~~~t~~~~~~~i~~iWl~s~l~~~p~~~~~--~~~~~---~~~~~~~C~~~~~~--~~~~~~~~~--~~~lPl~ii 246 (483)
-+...++.....+...|++.+++.....+.. ..+.. .......|...... ....+..+. -=++.+.+|
T Consensus 84 w~~lK~k~pk~i~~~~~~~Wilnlli~~~~~~~~~~~~n~t~~~~~~~~~yCs~~~~~~~~~~~~~~~~~~~D~~fvgLM 163 (265)
T PF03402_consen 84 WAELKVKAPKYIGPSCLFCWILNLLININVLVYIIATPNSTNNNFTYSLGYCSSVPISYIVSSLFATLLSFRDVLFVGLM 163 (265)
T ss_pred hhhhhhhcCCccccHHHHHHHHHHhhhcceeEEEEecCccccCceeecCCeEEEEecchhhhhhhhhHHHhhHHHHHHHH
Confidence 1112334555667788999888775432221 11111 11123356432221 111222222 125667788
Q ss_pred HHHHHHHHHHHHhhhHH
Q psy929 247 ITVYYKIFCAARKIVAE 263 (483)
Q Consensus 247 ~~~y~~I~~~lr~~~~~ 263 (483)
+.+-+.+...+.||+++
T Consensus 164 ~~aSgyMV~~L~RH~q~ 180 (265)
T PF03402_consen 164 IWASGYMVFLLYRHHQQ 180 (265)
T ss_pred Hhhhhhheeeeeecccc
Confidence 88888888888887643
No 22
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=97.90 E-value=0.00038 Score=67.25 Aligned_cols=122 Identities=16% Similarity=0.128 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--Cccc-chhhHHHHH
Q psy929 71 LIIGLILLIIIIVTIVGNILVCIAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSG--KWNF-GFMMCNLWV 147 (483)
Q Consensus 71 ~~l~~~~~li~v~gl~gN~lvi~vi~~~~~lrt~~~ill~nLavaDll~~~~~~p~~i~~~~~~--~~~~-~~~~C~~~~ 147 (483)
.+..++-++.+++..+.|..+++.+...|+.|++...++--..+.|.+.+....+..+...... .... ....=-..+
T Consensus 6 ~iv~~i~i~~s~~~~~iN~~lL~~if~~Kk~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~ 85 (273)
T PF10316_consen 6 IIVSIIGIIFSIITCLINFYLLYSIFYSKKKKKPDLSLFYFRFAIDVFYGFSVFIYLIYYILFSLFPEFLDYKNLIFYIG 85 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCEEeeHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhccccEEeehh
Confidence 3455556677789999999999999987774444445555678999999887766655444321 1111 111111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHheeeCCcccceeeccchhhhhhH
Q psy929 148 SFDVLSCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVV 192 (483)
Q Consensus 148 ~l~~~~~~~S~~~l~~IsidRy~aI~~P~~y~~~~t~~~~~~~i~ 192 (483)
................||+||.+|+..|..|+..+.+-....+++
T Consensus 86 ~p~~~~~~iR~~l~~~Ia~dR~~A~~fPI~y~~~r~k~~~~~I~~ 130 (273)
T PF10316_consen 86 WPSSNLGSIRSILALIIALDRVFAVYFPIFYHNYRKKIPNFIIII 130 (273)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCccccHHHHHH
Confidence 334444566778889999999999999999887655444433333
No 23
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=97.88 E-value=0.00025 Score=68.95 Aligned_cols=127 Identities=12% Similarity=0.138 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC--C-cchHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcC--C----c-ccchhhHHHH
Q psy929 78 LIIIIVTIVGNILVCIAVCIVRK--L-RRPCNYLLVSLAVSDLCVAILVMPM-ALLYEVSG--K----W-NFGFMMCNLW 146 (483)
Q Consensus 78 ~li~v~gl~gN~lvi~vi~~~~~--l-rt~~~ill~nLavaDll~~~~~~p~-~i~~~~~~--~----~-~~~~~~C~~~ 146 (483)
++-++.+++.+..+++++.++++ . +++.+.+...-++.+++.-+...+. -+.....+ . + ..........
T Consensus 5 ~~Ygi~s~~l~~~~~~~i~~~~~~~~~~~sFy~l~~~d~~~ni~~~ln~~~~~Rl~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (275)
T PF02118_consen 5 LIYGIPSLILYIFILYVIWKSKKKSYFKSSFYRLYIMDLIMNILTYLNTWITLRLPSYTPPFCPFFLPFFENPPFFLNIF 84 (275)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccccccCCccHHHHHHHhHHHHHHHHHHHHHHHhccccCccchhHHHHHcCCcHHHHHH
Confidence 34567888889999999988777 4 6666766666667777664433322 11111000 0 0 1223456667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHheeeCCcccceeeccchhhhhhHHHHHHHHHHHHhh
Q psy929 147 VSFDVLSCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPP 205 (483)
Q Consensus 147 ~~l~~~~~~~S~~~l~~IsidRy~aI~~P~~y~~~~t~~~~~~~i~~iWl~s~l~~~p~ 205 (483)
.++...+..+...+...|+++|+-+|..|.+|.+..++.. ..+++++.++.+....+.
T Consensus 85 ~~l~~~~~~~Q~~~~~~is~nR~t~v~~p~~~~~~W~~~~-~~~i~~i~~~p~~~~~~~ 142 (275)
T PF02118_consen 85 YFLQYYFAYVQYLSTILISLNRFTSVLFPIRYEKFWKRYY-WIIIIIIFLLPFSFTWNI 142 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHhhh-hhheeeeeehhHHHHHHH
Confidence 7788888999999999999999999999999887766443 344555555555444433
No 24
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=97.82 E-value=0.0016 Score=61.33 Aligned_cols=168 Identities=14% Similarity=0.216 Sum_probs=107.3
Q ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHH----HHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHH
Q psy929 88 NILVCIAVCIVRKLRRPCNYLLVSLAVSDLCVAIL----VMPMALLYEVSGKWNFGFMMCNLWVSFDVLSCTASILNLCM 163 (483)
Q Consensus 88 N~lvi~vi~~~~~lrt~~~ill~nLavaDll~~~~----~~p~~i~~~~~~~~~~~~~~C~~~~~l~~~~~~~S~~~l~~ 163 (483)
--+++.++.++.-.+-+..+|+..|.++-++.+.+ .+|..+......+.. .+..-.+..+...++.++-.++-..
T Consensus 32 ~Flv~~i~lW~~Fk~m~ffwFl~qlt~s~fi~S~lNl~inVPatlfsl~t~~~~-~s~~f~~~Sy~idf~h~siLfsNlv 110 (305)
T PF04789_consen 32 AFLVLSIILWSHFKPMKFFWFLTQLTISVFIISSLNLLINVPATLFSLITKEFV-QSELFIFMSYLIDFCHYSILFSNLV 110 (305)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhheEeCcHHHHHhhhHHHh-ccchhhHHHHHHHHHHHHHHHHHHH
Confidence 33444555544444556789999999998888665 345444334433322 2345566778888999999999999
Q ss_pred HHHHHHheeeCCcccceeeccchhhhhhHHHHHHHHHHHHhhHhhhccccccCCC----cccccccc-------cchhhh
Q psy929 164 ISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDYREDNG----VSFCSVCQ-------NYGYQI 232 (483)
Q Consensus 164 IsidRy~aI~~P~~y~~~~t~~~~~~~i~~iWl~s~l~~~p~~~~~~~~~~~~~~----~~~C~~~~-------~~~~~~ 232 (483)
||+.|.....+--.-.+...+....+.+..+|++++..-... ...++.+.++.. ...|.... +....+
T Consensus 111 iaIqR~fVFFfr~~t~~~F~s~~iyiWL~~vWils~~v~~~l-~~~nC~Y~y~~~~~~y~L~C~~~~~~v~~~~P~~Iqi 189 (305)
T PF04789_consen 111 IAIQRFFVFFFRNLTDKVFESPVIYIWLLLVWILSIGVVYSL-MSNNCRYRYNKWSKHYQLNCETCNSVVDISPPRGIQI 189 (305)
T ss_pred HHHhhheeeeehhhhhhhccchHHHHHHHHHHHHHHHHHHHH-HhCCCeeecccccccEEEEcCCCCeeEeeCCCCchhH
Confidence 999998766532222234456677788889999998777654 334444444332 22465441 224555
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy929 233 YATLGSFYIPLTVMITVYYKIFCAAR 258 (483)
Q Consensus 233 ~~~~~~~~lPl~ii~~~y~~I~~~lr 258 (483)
.-.++.+.+|..+.+ .|+.|..++.
T Consensus 190 iE~ilQ~~IPi~Il~-iYiAIIiKI~ 214 (305)
T PF04789_consen 190 IEIILQFGIPIFILV-IYIAIIIKII 214 (305)
T ss_pred HHHHHHHhHHHHHHH-HHHHHHHHHH
Confidence 677888999976655 5887776654
No 25
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=97.74 E-value=1.2e-05 Score=76.64 Aligned_cols=129 Identities=18% Similarity=0.157 Sum_probs=3.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHH
Q psy929 75 LILLIIIIVTIVGNILVCIAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLSC 154 (483)
Q Consensus 75 ~~~~li~v~gl~gN~lvi~vi~~~~~lrt~~~ill~nLavaDll~~~~~~p~~i~~~~~~~~~~~~~~C~~~~~l~~~~~ 154 (483)
++..+-+.+++++-.+.+......|++|+..+....||++++++..+..+.. ......+.....+..|.....+..++.
T Consensus 5 ~i~~vg~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~-~~~~~~~~~~~~~~~C~~~a~~~hy~~ 83 (242)
T PF00002_consen 5 IISYVGCSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIG-ISQTFSPISTTNHCLCRAIAILLHYFF 83 (242)
T ss_dssp HHHHHHHH------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHhee-hhhccccccccccccchhhhhHhHHHH
Confidence 3444555666676666666666668888878888999999999876544322 111111111112235999999999999
Q ss_pred HHHHHHHHHHHHHHHheeeCCcccceeeccchhhhhhHHHHHHHHHHHHhhHhh
Q psy929 155 TASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIV 208 (483)
Q Consensus 155 ~~S~~~l~~IsidRy~aI~~P~~y~~~~t~~~~~~~i~~iWl~s~l~~~p~~~~ 208 (483)
.++..-+.+.++|=|..++.+.. ..+++.....+..|.++++........
T Consensus 84 la~f~Wm~~~~~~l~~~~~~~~~----~~~~~~~~~~~~gwg~P~~iv~i~~~~ 133 (242)
T PF00002_consen 84 LASFFWMLVEAFYLYRLLVKVFN----SSRRRFWWYYLIGWGIPALIVVISVAV 133 (242)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhheeEEEeec----ccchhhheeeeeeecCcceeeeeeeee
Confidence 99999999999999999988733 224555667778899998888776543
No 26
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=97.51 E-value=0.0018 Score=63.94 Aligned_cols=227 Identities=13% Similarity=0.061 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcchHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcC---Ccccc--hhh
Q psy929 72 IIGLILLIIIIVTIVGNILVCIAVCIV-RKLRRPCNY---LLVSLAVSDLCVAILVMPMALLYEVSG---KWNFG--FMM 142 (483)
Q Consensus 72 ~l~~~~~li~v~gl~gN~lvi~vi~~~-~~lrt~~~i---ll~nLavaDll~~~~~~p~~i~~~~~~---~~~~~--~~~ 142 (483)
++...+-++++++++.|.+.++.+..+ +++.+-.++ +.+...++|+-.+.+..|..+.....+ ++... +..
T Consensus 10 ~li~~~~~ig~iS~~~n~~~iyLi~fks~k~~~fry~ll~~Qi~~~l~di~~t~L~qpipLfP~~agy~~G~l~~~f~i~ 89 (303)
T PF10327_consen 10 WLINYYHIIGVISFILNSLGIYLIIFKSPKLDNFRYYLLYFQISCTLTDIHLTFLMQPIPLFPIPAGYCVGFLARYFGIS 89 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeEEEecCCccchhhHHHHHHHHHHHhhhhhhhhccchhhcceeEEEEEeehhhcCCCc
Confidence 355677789999999999999877754 344443333 334567899999988888877665543 11111 133
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHheeeCCcccceeeccchhhhhhHHHHHHHHHHHHhhHhhhccccc----cCCC
Q psy929 143 CNLWVSFDVLSCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDYR----EDNG 218 (483)
Q Consensus 143 C~~~~~l~~~~~~~S~~~l~~IsidRy~aI~~P~~y~~~~t~~~~~~~i~~iWl~s~l~~~p~~~~~~~~~~----~~~~ 218 (483)
+.....+..+.....+-.++.--+-|+.+|.+..+.+ ..++........+..+..+...+.......++.. ...+
T Consensus 90 ~h~~~~i~~~l~~~q~~~L~~CF~~KHQaIa~i~~~~-~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~eeq~~yI~~n 168 (303)
T PF10327_consen 90 SHYLMTIWIFLFIFQIESLVICFLRKHQAIARILSKH-VLPKWFYIFFYFFCILFPFFIFICFYFSGMSREEQMEYIREN 168 (303)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-cCcHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 4444556666666777778888889999999987643 3444444444444444444444432221111100 0112
Q ss_pred cccccccc-----------cchh--hhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHhhhcceeeeeeeccccCCCC
Q psy929 219 VSFCSVCQ-----------NYGY--QIYATLGSFYIPLTVMITVYYKIFCAARKIVAEEKRAQSHIIMEHCYLQIHNNSS 285 (483)
Q Consensus 219 ~~~C~~~~-----------~~~~--~~~~~~~~~~lPl~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (483)
.+.|.... +..+ .....+++.++-..++.+++..+++.+++.+++.+
T Consensus 169 yP~~~~~F~~l~nf~iY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~L~~~k~~iS-------------------- 228 (303)
T PF10327_consen 169 YPEYLSWFSSLPNFAIYDFNPWFIFFFILAFFGGFLCFVIFIFLTIDMFRMLKKLKKKIS-------------------- 228 (303)
T ss_pred CCchhHHHhcCCCEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------------
Confidence 22232111 1111 11122233455566777778888887766543221
Q ss_pred CCCCCCCCccccccccccCCCCccCCCCccccccchhhHHHHhhhhhhhhhhhhhhhhhccccchhhhhhh
Q psy929 286 PATNSNRGHTHRTSTTSTNTTGRWKPGGCRKWLRTQDRVQCKRKNKANKYQEIQESLDLDCTSEYFTRTLE 356 (483)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~w~P~~~~~~~~~~~~~~~~~~~k~~k~l~iiv~vflicwlP~~i~~l~ 356 (483)
++..++.+++.+.+.+-..+-.+|-+|..+..+.
T Consensus 229 -------------------------------------~~ty~kHk~av~SLi~Q~~~~~i~~~P~~~~~~~ 262 (303)
T PF10327_consen 229 -------------------------------------KQTYQKHKEAVRSLIAQFATSSICILPPFIFVVV 262 (303)
T ss_pred -------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3356667778888888888888888998776543
No 27
>KOG4193|consensus
Probab=97.31 E-value=0.0074 Score=64.69 Aligned_cols=165 Identities=16% Similarity=0.207 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccch-h-hHHHHHHHHHHHHHH
Q psy929 79 IIIIVTIVGNILVCIAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGF-M-MCNLWVSFDVLSCTA 156 (483)
Q Consensus 79 li~v~gl~gN~lvi~vi~~~~~lrt~~~ill~nLavaDll~~~~~~p~~i~~~~~~~~~~~~-~-~C~~~~~l~~~~~~~ 156 (483)
+-+++++++=++.+++.+..|+++.-.+....||+++=++.-+ ..+.+.|.-+. . .|....++..++..+
T Consensus 328 VG~~iSlvcL~lti~ty~~~~~l~~~~~~i~~~l~~~L~l~~l--------~fL~~~~~~~~~~~~C~~~a~llhff~La 399 (610)
T KOG4193|consen 328 VGCIISLVCLLLTIATYLLFRKLQNDRTKIHINLCLCLFLAEL--------LFLLGIDRTSTSVVLCIAAAILLHFFFLA 399 (610)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH--------HHhcccccccCcccccHHHHHHHHHHHHH
Confidence 3344445554555555555555555447777888887322211 11222332222 2 799999999999999
Q ss_pred HHHHHHHHHHHHHheeeCCcccceeeccchhhhhhHHHHHHHHHHHHhhHhhhccccccCCCcccccccccchhhhhhhh
Q psy929 157 SILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDYREDNGVSFCSVCQNYGYQIYATL 236 (483)
Q Consensus 157 S~~~l~~IsidRy~aI~~P~~y~~~~t~~~~~~~i~~iWl~s~l~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~ 236 (483)
..+-+.++++.=|+.++.-++ ....++.....++.|...+++...........+........|-........+
T Consensus 400 aF~Wm~leg~hl~~~~v~vf~---~~~~~~~l~~~~~gwg~Pavvv~Isa~~~~~~~~~~~~~~~CWl~~~~~~~~---- 472 (610)
T KOG4193|consen 400 AFFWMLLEGFHLYLLLVEVFR---SRPRRRKLLYSLYGWGVPAVVVGVSALVDPDLEGQYGTPRVCWLDTQNGFIW---- 472 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHhc---cccchHHHHHHHHHhhhhHHHHhheeEEeccCccccccCCceEEecCCceEE----
Confidence 999999999999995554332 3344555555468999988887765443222211112222353322222111
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHh
Q psy929 237 GSFYIPLTVMITVYYKIFCAARK 259 (483)
Q Consensus 237 ~~~~lPl~ii~~~y~~I~~~lr~ 259 (483)
.|+.|+.+|+.+++.++...-+
T Consensus 473 -~F~GPv~~ii~~Ni~~Fv~t~~ 494 (610)
T KOG4193|consen 473 -SFLGPVTLIILVNIVMFVVTLK 494 (610)
T ss_pred -EEehHHHHHHHHHHHHHHHHHH
Confidence 1777888888888666655543
No 28
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=96.97 E-value=0.0015 Score=64.75 Aligned_cols=101 Identities=17% Similarity=0.271 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcchH-HHHHHHHHHHHHHHHHHHH---HHHHHHH-----h--cCCcccchhhHHHHH
Q psy929 79 IIIIVTIVGNILVCIAVCIVRKLRRPC-NYLLVSLAVSDLCVAILVM---PMALLYE-----V--SGKWNFGFMMCNLWV 147 (483)
Q Consensus 79 li~v~gl~gN~lvi~vi~~~~~lrt~~-~ill~nLavaDll~~~~~~---p~~i~~~-----~--~~~~~~~~~~C~~~~ 147 (483)
+.++++++.|++.++.+.++.+...-+ -+++...|+.|++++++-. |...... . .+.+..+........
T Consensus 7 ~~~~~s~~~N~~Li~Li~~~s~k~~G~Yk~Lm~~fs~~~i~fs~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (307)
T PF10326_consen 7 IGFVLSLFLNSLLIYLILTKSPKSLGSYKYLMIYFSIFEIIFSILDFLVQPIIHSYGSSFVVFSDSGPFFLSKSIGQILL 86 (307)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEehhHHHHHHHHHHHHHHHhceeecCCeeEEEeecccccccchheeehh
Confidence 567899999999999988654444333 3566778888988876533 3221100 0 112223344455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHheeeCCcccc
Q psy929 148 SFDVLSCTASILNLCMISVDRYYAITKPLEYG 179 (483)
Q Consensus 148 ~l~~~~~~~S~~~l~~IsidRy~aI~~P~~y~ 179 (483)
.+...+...+...++.--+.||.++++|.+.+
T Consensus 87 ~~y~~~f~~~~~llaihFiYRY~av~~~~~l~ 118 (307)
T PF10326_consen 87 AIYCGCFGMSFSLLAIHFIYRYWAVCRPKKLR 118 (307)
T ss_pred hhhhhhHHHHHHHHHhHhhhheeeeccchhhc
Confidence 66666777777777888889999999998643
No 29
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=96.90 E-value=0.055 Score=54.03 Aligned_cols=107 Identities=19% Similarity=0.229 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchH-HHHHHHHHHHHHHHHHHHHH-HH-HHHHh--cC---CcccchhhH
Q psy929 72 IIGLILLIIIIVTIVGNILVCIAVCIVRKLRRPC-NYLLVSLAVSDLCVAILVMP-MA-LLYEV--SG---KWNFGFMMC 143 (483)
Q Consensus 72 ~l~~~~~li~v~gl~gN~lvi~vi~~~~~lrt~~-~ill~nLavaDll~~~~~~p-~~-i~~~~--~~---~~~~~~~~C 143 (483)
+-.++..++.++++++....+-.+.++.-....+ .+++.+|..+++--.....- .. ++..+ .+ +..+.+..|
T Consensus 22 ~~~~~~~~~~~~t~~~s~~Ai~~l~~ksif~~sTr~LL~~~l~~a~~Hq~~y~~~~~~~lyrsf~~~~dpC~i~f~~~eC 101 (328)
T PF02117_consen 22 INQIFILIIIIITFIFSVFAIKKLWKKSIFSNSTRILLISNLLFANIHQISYAIIQIWSLYRSFFYSDDPCSILFTSSEC 101 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeEeecCce
Confidence 3445556677788888888888888766666555 55666777776644322111 11 11111 11 345667789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHheeeCCccc
Q psy929 144 NLWVSFDVLSCTASILNLCMISVDRYYAITKPLEY 178 (483)
Q Consensus 144 ~~~~~l~~~~~~~S~~~l~~IsidRy~aI~~P~~y 178 (483)
.....+..++....++.-+++.+||.+|-..|-.|
T Consensus 102 ~~~~~~~~~~~~~~~~~q~aL~idRl~at~~~~~~ 136 (328)
T PF02117_consen 102 FPYYYFYYFTNSGMIFIQFALTIDRLLATFFPKYY 136 (328)
T ss_pred eeeehHHHHHHHHHHHHHHHHHHHHHHHHhchhhh
Confidence 98888889998999999999999999998887554
No 30
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=96.49 E-value=0.053 Score=49.08 Aligned_cols=95 Identities=13% Similarity=0.268 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCc-c-hHHHHHHHHHHHHHHHHHHHHHHHHHHH------hc-CCcccchhhHHHHHH
Q psy929 78 LIIIIVTIVGNILVCIAVCIVRKLR-R-PCNYLLVSLAVSDLCVAILVMPMALLYE------VS-GKWNFGFMMCNLWVS 148 (483)
Q Consensus 78 ~li~v~gl~gN~lvi~vi~~~~~lr-t-~~~ill~nLavaDll~~~~~~p~~i~~~------~~-~~~~~~~~~C~~~~~ 148 (483)
.++-..+.+.+.+.+..+.++|++- + .+.+.+ +-+..-++.+|..+.+. .. .+-...-..|.+.--
T Consensus 48 ~~v~~~s~~~s~~L~ifi~~rk~l~~~~ksTIvF-----aT~g~fvLtlP~~lf~~wl~~~l~~~~ep~ytI~vCSflk~ 122 (226)
T PF06681_consen 48 FIVNTVSWLFSYFLCIFIWRRKNLIRSYKSTIVF-----ATFGQFVLTLPLYLFQTWLVFFLWFGHEPQYTIFVCSFLKN 122 (226)
T ss_pred HHHHhHHHHHHHHHHHHHhhhHHHHHhhcCeEEE-----eeHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeehHHHh
Confidence 3555667777777666666655521 1 112211 22222234455444322 11 234456678988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHheeeCCcc
Q psy929 149 FDVLSCTASILNLCMISVDRYYAITKPLE 177 (483)
Q Consensus 149 l~~~~~~~S~~~l~~IsidRy~aI~~P~~ 177 (483)
+......+.....+++|+|||..|+.-.|
T Consensus 123 f~S~t~s~~~vip~aVAIyRy~~VV~k~r 151 (226)
T PF06681_consen 123 FTSSTTSCAQVIPVAVAIYRYLIVVLKKR 151 (226)
T ss_pred HHHHHhhhhccchhhhhhhhhheeeeccc
Confidence 66666666666777899999999987544
No 31
>KOG4564|consensus
Probab=96.29 E-value=0.35 Score=50.07 Aligned_cols=177 Identities=15% Similarity=0.131 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------c----ccchhh
Q psy929 75 LILLIIIIVTIVGNILVCIAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGK--------W----NFGFMM 142 (483)
Q Consensus 75 ~~~~li~v~gl~gN~lvi~vi~~~~~lrt~~~ill~nLavaDll~~~~~~p~~i~~~~~~~--------~----~~~~~~ 142 (483)
++|.+-..++++.=++.+.++...|++|=..|++-.||-++=++-++..+.........++ + ..+...
T Consensus 149 ~lytvGyslSl~sL~vAl~If~~FR~L~CtRn~IH~nLF~SfiLra~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 228 (473)
T KOG4564|consen 149 ILYTVGYSLSLVSLLVALIIFLYFRSLHCTRNYIHMNLFASFILRAASVLIKDLVLVVNGEQDASSDTSLHCLISSNPVG 228 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccchh
Confidence 5666666667776667777788888999888999999999988887655544332221111 0 145678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHheeeCCcccceeeccchhhhhhHHHHHHHHHHHHhhHhhhccccccCCCcccc
Q psy929 143 CNLWVSFDVLSCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDYREDNGVSFC 222 (483)
Q Consensus 143 C~~~~~l~~~~~~~S~~~l~~IsidRy~aI~~P~~y~~~~t~~~~~~~i~~iWl~s~l~~~p~~~~~~~~~~~~~~~~~C 222 (483)
|+....+...+..+..+-|.+=.+.=|..++-.... .+++-..-+++.|.+.+++..+-.+.. ...++. .|
T Consensus 229 Ck~~~~~~~Yf~~aNf~WmlvEGlYLhtLlv~~~~s----er~~~~~y~~iGWG~P~v~v~~Wai~r---~~~~d~--~C 299 (473)
T KOG4564|consen 229 CKLLFVFFQYFVLANFFWMLVEGLYLHTLLVVAFFS----ERRYFWLYLLIGWGVPAVFVVVWAIVR---LYLEDT--GC 299 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeecc----CccHHHHHHHHhhCCcHHHhhhHHhHh---eeeccc--cc
Confidence 999999888888888888877777666555543221 234556667788999888888765543 221222 56
Q ss_pred cccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh
Q psy929 223 SVCQNYGYQIYATLGSFYIPLTVMITVYYKIFCAARKI 260 (483)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~lPl~ii~~~y~~I~~~lr~~ 260 (483)
-...+.....++.-.-.++.+++-.+..+.|++.+-++
T Consensus 300 W~~~~~~~~~WIi~gPi~~ai~vNf~flinIvrILv~K 337 (473)
T KOG4564|consen 300 WDSNDTGHIWWIIRGPILLAILVNFIFLINIVRILVTK 337 (473)
T ss_pred cccCCCcceEEEEeccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433311111111112444555555666666666543
No 32
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=95.82 E-value=1.8 Score=43.13 Aligned_cols=154 Identities=10% Similarity=0.112 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH--HHhc--C---------C
Q psy929 69 QALIIGLILLIIIIVTIVGNILVCIAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALL--YEVS--G---------K 135 (483)
Q Consensus 69 ~~~~l~~~~~li~v~gl~gN~lvi~vi~~~~~lrt~~~ill~nLavaDll~~~~~~p~~i~--~~~~--~---------~ 135 (483)
+....-....+.+.+.++.+++.++.+..++++-+-...-++-|+++-++.++..+...+. .... + .
T Consensus 7 e~~~~~~wi~~~s~ic~~~t~ftv~Tf~id~~rf~yPerpi~fl~~Cy~~~s~~~l~~~~~g~~~i~C~~~~~~~~~~~~ 86 (328)
T PF01534_consen 7 EKEFARIWIGVWSVICFISTLFTVLTFLIDRSRFRYPERPIIFLSFCYFIVSLGYLIRFILGRESIACRSQDGTERILVQ 86 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccchhhHHHHHHHHHHHHHHHHHhccCCCcCCCcCCCCceeEee
Confidence 3444445555666677777888777777666644444555555665555554443333222 1110 0 0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeCCcccceeeccchhhhhhHHHHHHHHHHHHhhHhhhcccccc
Q psy929 136 WNFGFMMCNLWVSFDVLSCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDYRE 215 (483)
Q Consensus 136 ~~~~~~~C~~~~~l~~~~~~~S~~~l~~IsidRy~aI~~P~~y~~~~t~~~~~~~i~~iWl~s~l~~~p~~~~~~~~~~~ 215 (483)
...+...|.+...+.+++..++..=-+.+++.=|++-..--.+.. -.++....-++.|.+..+..+..+... ....
T Consensus 87 ~~~~~~~C~~~F~l~Yyf~mAa~~WWviLt~~W~lsa~~kw~~e~--i~~~s~yfH~~aW~iP~~~ti~vL~~~--~Vdg 162 (328)
T PF01534_consen 87 DGLENSSCTVVFLLLYYFGMAASLWWVILTLTWFLSAGLKWGSEA--IEKKSSYFHLVAWGIPAVLTIAVLALR--KVDG 162 (328)
T ss_pred cCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccCcch--hhhhcchhhhHHhhhhHHHHHHHHHhc--cccc
Confidence 123467899999988888888888888999999998765433222 234556667788999999888765432 3333
Q ss_pred CCCcccccccc
Q psy929 216 DNGVSFCSVCQ 226 (483)
Q Consensus 216 ~~~~~~C~~~~ 226 (483)
+.-...|....
T Consensus 163 D~ltGiC~Vg~ 173 (328)
T PF01534_consen 163 DELTGICFVGN 173 (328)
T ss_pred ccccceeEEeC
Confidence 44555675443
No 33
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=95.40 E-value=0.64 Score=45.73 Aligned_cols=134 Identities=16% Similarity=0.156 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC--CcchHHH---HHHHHHHHHHHHHHHHHHHHHHHHhc----CCcccchhhH
Q psy929 73 IGLILLIIIIVTIVGNILVCIAVCIVRK--LRRPCNY---LLVSLAVSDLCVAILVMPMALLYEVS----GKWNFGFMMC 143 (483)
Q Consensus 73 l~~~~~li~v~gl~gN~lvi~vi~~~~~--lrt~~~i---ll~nLavaDll~~~~~~p~~i~~~~~----~~~~~~~~~C 143 (483)
+....=++.++++.-|.+.++.+.++.. +++.... +.+-..+.|+..+.+..|........ |-...-+...
T Consensus 6 ~~~~~h~~~~i~~Pi~~~~~y~Il~ktp~~m~~~k~~ll~~~~~~~~~d~~~~~l~~P~~~~P~~~~~~~G~l~~~gv~~ 85 (302)
T PF10318_consen 6 YSIVLHIITIISIPIYIFGFYCILFKTPKSMKSVKWYLLNHHFWNFLLDLYLSFLIIPYFFFPSPAGYPLGILSYFGVPT 85 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeEeChhhhHHHHHHHHHHHHHHHHHHHHhhhEEeeeeccchHHhhCCcchhhcccCh
Confidence 3344557788899999999988876432 3332222 22234578888888777765543332 2111112446
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHheeeCCcccceeeccchhhhhhHHHHHHHHHHHHhhHhh
Q psy929 144 NLWVSFDVLSCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIV 208 (483)
Q Consensus 144 ~~~~~l~~~~~~~S~~~l~~IsidRy~aI~~P~~y~~~~t~~~~~~~i~~iWl~s~l~~~p~~~~ 208 (483)
..+.++..........++..+--+||.++....+ +...++......+..++.+.+..+|..+.
T Consensus 86 ~~q~~i~~~~~~~~~~S~~~lFe~R~~~i~~~~~--~~~~~~~r~~~~~~~y~~~~~~~~~~~~~ 148 (302)
T PF10318_consen 86 PIQFYIGVTLLAFVGVSILSLFENRYQIIIRNRS--RSLWKKIRIIFIIFNYIIAFLFFIPIYLS 148 (302)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccc--cccchhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 6677777777777888888888999999986544 12223334445555667777777666553
No 34
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=95.38 E-value=2 Score=40.09 Aligned_cols=47 Identities=13% Similarity=0.107 Sum_probs=40.4
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeCCcccceee
Q psy929 136 WNFGFMMCNLWVSFDVLSCTASILNLCMISVDRYYAITKPLEYGVKR 182 (483)
Q Consensus 136 ~~~~~~~C~~~~~l~~~~~~~S~~~l~~IsidRy~aI~~P~~y~~~~ 182 (483)
-..+...|+.......+.+..+++.-..+++|||+|....-+|...+
T Consensus 78 LiI~~~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~~YE~~r 124 (236)
T PF02175_consen 78 LIIDPTLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAEKYENTR 124 (236)
T ss_pred EEEchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccCc
Confidence 34566788888889999999999999999999999999988887643
No 35
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=94.92 E-value=2.4 Score=41.84 Aligned_cols=121 Identities=15% Similarity=0.091 Sum_probs=73.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeCCcccceeeccchhhhhhHHHHHHHHHHHHhhHhhhcc-cc---cc
Q psy929 140 FMMCNLWVSFDVLSCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGN-DY---RE 215 (483)
Q Consensus 140 ~~~C~~~~~l~~~~~~~S~~~l~~IsidRy~aI~~P~~y~~~~t~~~~~~~i~~iWl~s~l~~~p~~~~~~~-~~---~~ 215 (483)
+..=+...++...+.+.+.+.-++.++=|-+.+..|.++.. ...+-....+-++.+++++.+.|.+...+. .+ .+
T Consensus 100 n~~Lk~l~~~~~~~~Y~s~lf~~Lfc~~Rl~il~~p~~~~~-i~~~i~~~~~P~i~i~p~~~~f~~~pa~G~C~Ql~~Pf 178 (307)
T PF10322_consen 100 NHFLKILVFFYYYFNYSSMLFPVLFCLLRLIILYSPRNHKK-ICRKIFRIWIPFIFIYPFCFTFPMFPALGYCRQLDPPF 178 (307)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeCccchhH-HHHhHHHHHHHHHHHHHHHHHHHccCCcEEEEeCCCCC
Confidence 34556777788889999999999999999999999987643 333444556667777777777776554431 01 11
Q ss_pred CCCccc--ccccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q psy929 216 DNGVSF--CSVCQNYGYQIYATLGSFYIPLTVMITVYYKIFCAARKIV 261 (483)
Q Consensus 216 ~~~~~~--C~~~~~~~~~~~~~~~~~~lPl~ii~~~y~~I~~~lr~~~ 261 (483)
..+... -...+.........++...+-++.++++++.+++++||.+
T Consensus 179 ~fGAI~I~~~~~~~~~~~~~~~l~~s~~~~~~iii~N~lm~~Klr~~k 226 (307)
T PF10322_consen 179 PFGAIIITSTGSWFNIRNSIFHLFFSIFWMISIIILNILMFFKLRKLK 226 (307)
T ss_pred CCCEEEEEEEcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111100 0111111111222222334445677778899999888754
No 36
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=94.91 E-value=1.9 Score=42.23 Aligned_cols=107 Identities=18% Similarity=0.152 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcc-hHHHHHHHHHHHHHHHHHH--HHHHHHHHH-------hcCCcccch-hhHHHHH
Q psy929 79 IIIIVTIVGNILVCIAVCIVRKLRR-PCNYLLVSLAVSDLCVAIL--VMPMALLYE-------VSGKWNFGF-MMCNLWV 147 (483)
Q Consensus 79 li~v~gl~gN~lvi~vi~~~~~lrt-~~~ill~nLavaDll~~~~--~~p~~i~~~-------~~~~~~~~~-~~C~~~~ 147 (483)
+.++++.+.|.+.++.+..+|+.+- .-.+++.--|+-|++.++. ..|..+... ..++|-... ..=....
T Consensus 13 ~~~~lsf~~Np~fiyli~~~~~~~~G~Yr~LL~~Fa~fn~~~S~~~~~vp~~vh~yry~F~~fi~dG~F~~~s~l~~~~l 92 (310)
T PF10319_consen 13 IFGILSFIVNPIFIYLIFTEKKSQFGNYRYLLLFFAIFNLIYSVVDLLVPICVHGYRYAFVVFISDGPFFEKSELGQHLL 92 (310)
T ss_pred HHHHHHHHHhhhhheeEEcccccccccHHHHHHHHHHHHHHHHHHHHHhhheeeccceEEEEEEcCCcCcCcchHHHHHH
Confidence 5578899999999999998887653 3357888999999999775 334322211 122332211 1112222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHheeeCCcccceeeccc
Q psy929 148 SFDVLSCTASILNLCMISVDRYYAITKPLEYGVKRTPK 185 (483)
Q Consensus 148 ~l~~~~~~~S~~~l~~IsidRy~aI~~P~~y~~~~t~~ 185 (483)
..-..+..+|--.|.+=-+.||+++++|-..++...+.
T Consensus 93 s~RCsfIs~sYaIL~~HFvYRYl~l~~~~~~~~~F~p~ 130 (310)
T PF10319_consen 93 SIRCSFISGSYAILHIHFVYRYLVLFNSKFINKYFMPY 130 (310)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhCcHHHHHhhhhH
Confidence 23333344454555666689999999986544444333
No 37
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=93.69 E-value=7.6 Score=39.42 Aligned_cols=134 Identities=19% Similarity=0.213 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcC--------C-c
Q psy929 69 QALIIGLILLIIIIVTIVGNILVCIAVCIVRKLRRPCNYLLVSLAVSD---LCVAILVMPMALLYEVSG--------K-W 136 (483)
Q Consensus 69 ~~~~l~~~~~li~v~gl~gN~lvi~vi~~~~~lrt~~~ill~nLavaD---ll~~~~~~p~~i~~~~~~--------~-~ 136 (483)
...++.++-.++.+++..-....+.++.+.|..|.-.+++.+.+...- ++.-++..|........+ . |
T Consensus 25 ~~~~~~i~e~~l~~~~~~~~~~~~~i~~~~r~FH~N~~~l~~~~~~~w~e~~i~k~~i~~y~~~~~~~~~~~~~~~~~~~ 104 (365)
T PF03125_consen 25 FYIILLIFELILYIICFYFTFKSCYIILKIRQFHRNLNILFIFILLQWFELIIGKILIIPYQIGIITLGDISIGTYIQWW 104 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeecCccchhhhhhh
Confidence 344455555566666666666667788888888876666655544433 333333444443222111 0 1
Q ss_pred c------------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeCCcccceeeccchhhhhhHHHHHHHHHHH
Q psy929 137 N------------FGFMMCNLWVSFDVLSCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACIS 202 (483)
Q Consensus 137 ~------------~~~~~C~~~~~l~~~~~~~S~~~l~~IsidRy~aI~~P~~y~~~~t~~~~~~~i~~iWl~s~l~~ 202 (483)
. .+...-.+.+++....++...+.+.++++||..|-.+--.|.+..+..-...++++.-++++..+
T Consensus 105 t~~~~~m~~v~~~~~~~~l~~~~~l~~~y~~~~~~~~~~~~iER~~AT~~i~dYEk~~R~~I~~~l~~~~~~~~~~~s 182 (365)
T PF03125_consen 105 TDDPSEMIPVNSFNDSWPLFIGGFLRWHYMFSAIFCLLAIVIERCFATYFIKDYEKKSRRWISILLIIFSQIFSIIFS 182 (365)
T ss_pred ccCcccceeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHH
Confidence 1 11122333344555556667899999999999999988888764332222333333444444444
No 38
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=92.90 E-value=3 Score=40.66 Aligned_cols=123 Identities=15% Similarity=0.119 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHh-cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHH
Q psy929 83 VTIVGNILVCIAVCI-VRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLSCTASILNL 161 (483)
Q Consensus 83 ~gl~gN~lvi~vi~~-~~~lrt~~~ill~nLavaDll~~~~~~p~~i~~~~~~~~~~~~~~C~~~~~l~~~~~~~S~~~l 161 (483)
++++|..+.+.-+.. -|....++-.++.-+.+.++...+-.+ .+-.+. .+|. ...|.+...+......+-....
T Consensus 3 ~s~i~~~l~i~Pl~wH~ra~N~~~~~li~Wl~l~nl~~~INai-IW~~n~--~~~~--~~wCDI~~kl~~~~~~g~~~a~ 77 (283)
T PF02076_consen 3 FSFIAFVLLIVPLPWHWRARNIGTCSLIFWLFLSNLIYFINAI-IWRDND--INWW--PVWCDISTKLIIGSSVGIPAAS 77 (283)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHhhh-hcCCCC--CccC--ceeeeehHHHHHHHHHHHHHHH
Confidence 344555554443333 334446677888889888887743221 111111 1222 2789888877776666544444
Q ss_pred HHHHHHHHheeeCCcccce--eeccchhhhhhHHHHHHHHHHHHhhHhhhcc
Q psy929 162 CMISVDRYYAITKPLEYGV--KRTPKRMILCVVFVWLGAACISLPPLIVLGN 211 (483)
Q Consensus 162 ~~IsidRy~aI~~P~~y~~--~~t~~~~~~~i~~iWl~s~l~~~p~~~~~~~ 211 (483)
.+|+-.=| .|..+..... ...+|+...=..+++.+.++.....++..++
T Consensus 78 lcI~r~L~-~I~s~r~~~~~~~~~rr~~~~d~~i~~g~Pil~m~l~yivQ~~ 128 (283)
T PF02076_consen 78 LCIMRRLY-RIASARAVSLSRSEKRRRIIIDLLICFGIPILQMALHYIVQGH 128 (283)
T ss_pred HHHHHHHH-HHhccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44443333 2333332211 1124555566777888888887776665543
No 39
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=92.82 E-value=0.13 Score=44.90 Aligned_cols=59 Identities=14% Similarity=0.245 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHheeeCCcccceeeccchhhhhhHHHHHHHHHHHHhhHh
Q psy929 149 FDVLSCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLI 207 (483)
Q Consensus 149 l~~~~~~~S~~~l~~IsidRy~aI~~P~~y~~~~t~~~~~~~i~~iWl~s~l~~~p~~~ 207 (483)
+..++.....+...+|+++|-..|.+|+....+.|.+|.++-+.++.++.+..-+.|++
T Consensus 50 ~~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~Fs~~kl~~YC~~i~i~~~i~LlIPy~ 108 (153)
T PF03383_consen 50 FGTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWFSDKKLWIYCGIIAILSFISLLIPYF 108 (153)
T ss_pred eehHHHHHHHHHHHHHHHhheEEEEecCCCccccccchhHHHHHHHHHHHHHHHHhhcC
Confidence 45666677788889999999999999998766899999999998877777776666644
No 40
>PHA03234 DNA packaging protein UL33; Provisional
Probab=91.22 E-value=0.079 Score=53.24 Aligned_cols=32 Identities=13% Similarity=-0.100 Sum_probs=27.7
Q ss_pred HHHhhhhhhhhhhhhhhhhhccccchhhhhhh
Q psy929 325 QCKRKNKANKYQEIQESLDLDCTSEYFTRTLE 356 (483)
Q Consensus 325 ~~~~~~k~~k~l~iiv~vflicwlP~~i~~l~ 356 (483)
..++++|+.|++.+++++|++||+||.+..+.
T Consensus 228 ~~~~~~k~~k~i~~vv~vF~iCWlPy~iv~l~ 259 (338)
T PHA03234 228 TEKKHKKTLFFIRILILSFLCIQIPNIAILIC 259 (338)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHH
Confidence 34567899999999999999999999988765
No 41
>PHA03235 DNA packaging protein UL33; Provisional
Probab=89.64 E-value=0.49 Score=48.86 Aligned_cols=29 Identities=7% Similarity=-0.060 Sum_probs=24.1
Q ss_pred hhhhhhhhhhhhhhhhccccchhhhhhhh
Q psy929 329 KNKANKYQEIQESLDLDCTSEYFTRTLEV 357 (483)
Q Consensus 329 ~~k~~k~l~iiv~vflicwlP~~i~~l~~ 357 (483)
++|..+++.+++++|++||+||.+..++.
T Consensus 239 ~~k~~~~v~iivv~F~iCWlPy~v~~l~~ 267 (409)
T PHA03235 239 RSRTLTFVCILLLSFLCLQTPFVAIMIFD 267 (409)
T ss_pred chhhhhhHHHHHHHHHHHHhHHHHHHHHH
Confidence 45667888889999999999999887763
No 42
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=86.03 E-value=1 Score=46.56 Aligned_cols=29 Identities=21% Similarity=0.004 Sum_probs=25.4
Q ss_pred hhhhhhhhhhhhhhhhhccccchhhhhhh
Q psy929 328 RKNKANKYQEIQESLDLDCTSEYFTRTLE 356 (483)
Q Consensus 328 ~~~k~~k~l~iiv~vflicwlP~~i~~l~ 356 (483)
+++|+.|++.+++++|++||+||.+..++
T Consensus 307 ~k~k~~rli~~ivi~f~lcW~Py~i~~ll 335 (417)
T PHA02638 307 KKTKSIIIVSIIIICSLICWIPLNIVILF 335 (417)
T ss_pred ccchhhhhHHHHHHHHHHHHhhHHHHHHH
Confidence 35677899999999999999999998777
No 43
>KOG4219|consensus
Probab=84.24 E-value=0.55 Score=47.16 Aligned_cols=73 Identities=12% Similarity=-0.059 Sum_probs=50.3
Q ss_pred cccccccCCCCccCCCCccccccchhhHHHHhhhhhhhh-hhhhhhhhhccccchhhhhhhhhhhHHHHHHhhhh
Q psy929 297 RTSTTSTNTTGRWKPGGCRKWLRTQDRVQCKRKNKANKY-QEIQESLDLDCTSEYFTRTLEVNDFQLNLKRARRK 370 (483)
Q Consensus 297 ~~~~~~~~~~~~w~P~~~~~~~~~~~~~~~~~~~k~~k~-l~iiv~vflicwlP~~i~~l~~~~f~~~~~~~~~~ 370 (483)
....++..|.+||+|+|...+......+... ++...++ +++--..--.++.++.++.+.+..|+..+++.+|-
T Consensus 262 mliiVV~~FaicWlPyh~y~il~~~~~~i~~-~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf~~~fr~ 335 (423)
T KOG4219|consen 262 MLIIVVVIFAICWLPYHIYFILNATNPEINR-KKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGFRRAFRW 335 (423)
T ss_pred HHHHHHHHHHHhccChhHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHHHHhhhhhe
Confidence 3445688999999999998887754433333 3334444 33333334477888899999999999998887643
No 44
>PF13853 7tm_4: Olfactory receptor
Probab=81.48 E-value=0.16 Score=44.15 Aligned_cols=80 Identities=21% Similarity=0.190 Sum_probs=49.6
Q ss_pred hhhhHHHHHHHHHHHHhhHhhhccccccC--CCcc---------cccccccch-hhhhhhhhhhhHHHHHHHHHHHHHHH
Q psy929 188 ILCVVFVWLGAACISLPPLIVLGNDYRED--NGVS---------FCSVCQNYG-YQIYATLGSFYIPLTVMITVYYKIFC 255 (483)
Q Consensus 188 ~~~i~~iWl~s~l~~~p~~~~~~~~~~~~--~~~~---------~C~~~~~~~-~~~~~~~~~~~lPl~ii~~~y~~I~~ 255 (483)
..+.++.|+.+++.+++....... .... .+.. .|.+....+ +......+..+.|+.+++++|++|+.
T Consensus 4 ~~l~~~~~~~~~~~~l~~~~~~~~-l~~~nii~~f~c~~~ll~LaC~dt~~~~~~~~~~~~~~~~~~~~~Il~SY~~Il~ 82 (144)
T PF13853_consen 4 LLLAAGSWLSGLLNSLPHTLLTLS-LCFCNIIHHFCCDPPLLKLACSDTSINEIVGFVVAIFILLGPLLLILFSYIRILR 82 (144)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHee-CCCCCCCcceeeCHHHhcccCCchhhhheeeecccceeEEEEeeccccceeEEEe
Confidence 455677898888888776654321 1111 1111 243333222 22333444568899999999999999
Q ss_pred HHHhhhHHHHhhh
Q psy929 256 AARKIVAEEKRAQ 268 (483)
Q Consensus 256 ~lr~~~~~~~~~~ 268 (483)
.+.|..+.++|+|
T Consensus 83 avlki~S~~~r~K 95 (144)
T PF13853_consen 83 AVLKIPSAEGRSK 95 (144)
T ss_pred hhhcccccccccc
Confidence 9999877666666
No 45
>PHA02834 chemokine receptor-like protein; Provisional
Probab=61.10 E-value=2.6 Score=41.92 Aligned_cols=70 Identities=16% Similarity=0.132 Sum_probs=44.9
Q ss_pred cccccCCCCccCCCCccccccchhhHH-----HHh-hhhhhhhhhhhhhhhhccccchhhhhhhhhhhHHHHHHhh
Q psy929 299 STTSTNTTGRWKPGGCRKWLRTQDRVQ-----CKR-KNKANKYQEIQESLDLDCTSEYFTRTLEVNDFQLNLKRAR 368 (483)
Q Consensus 299 ~~~~~~~~~~w~P~~~~~~~~~~~~~~-----~~~-~~k~~k~l~iiv~vflicwlP~~i~~l~~~~f~~~~~~~~ 368 (483)
......+..||+|++...+........ ... +.............+..|.+++++|.+.++.||+.++..+
T Consensus 232 ~~vv~~F~icWlPy~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~iNPiIY~~~~~~fR~~~~~~~ 307 (323)
T PHA02834 232 LTVVTFTVVFWVPFNIVLFINSLQSVGLIDIGCYHFKKIVYSIDIAELISFVHCCVNPIIYAFVGKNFKKVFKNMF 307 (323)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHhhccccHHHHHHhcHHHHHHHHHHH
Confidence 455778899999999887654322110 000 1111111234456777888999999999999999887654
No 46
>KOG4220|consensus
Probab=50.17 E-value=4.8 Score=40.82 Aligned_cols=60 Identities=12% Similarity=-0.135 Sum_probs=48.0
Q ss_pred HHHhhhhhhhhhhhhhhhhhccccchhhhhhhhhhhHHHHHHhhhhhhheeeeeeccccccCCCC
Q psy929 325 QCKRKNKANKYQEIQESLDLDCTSEYFTRTLEVNDFQLNLKRARRKALLFVSLSQLGTVSKSRPK 389 (483)
Q Consensus 325 ~~~~~~k~~k~l~iiv~vflicwlP~~i~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~ss~~~~ 389 (483)
...+|+|++|++..|.+.|++||.||.|..+++..+.+++...++.+. -|+.|.+|.-.|
T Consensus 408 ~~~rErKAAkTLsAILlAFIiTWtPYNImVlv~tFC~~CiP~tlW~~g-----YwLCYINSTiNP 467 (503)
T KOG4220|consen 408 SLVRERKAAKTLSAILLAFILTWTPYNIMVLVNTFCKNCIPETLWTFG-----YWLCYINSTINP 467 (503)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcccceeeeehHhhcccccchhHhhhh-----hheeeecccccH
Confidence 337899999999999999999999999999998888888777653333 366777764433
No 47
>PF10325 7TM_GPCR_Srz: Serpentine type 7TM GPCR chemoreceptor Srz; InterPro: IPR018817 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class z (Srz), a solo family amongst the superfamilies of chemoreceptors [, ]. The genes encoding Srz appear to be under strong adaptive evolutionary pressure [].
Probab=49.83 E-value=2.4e+02 Score=26.88 Aligned_cols=109 Identities=14% Similarity=0.056 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHheeeCCccccee-eccchhhhhhHHHHHHHHHHHHhhHhhhccccccCCCccccccccc
Q psy929 149 FDVLSCTASILNLCMISVDRYYAITKPLEYGVK-RTPKRMILCVVFVWLGAACISLPPLIVLGNDYREDNGVSFCSVCQN 227 (483)
Q Consensus 149 l~~~~~~~S~~~l~~IsidRy~aI~~P~~y~~~-~t~~~~~~~i~~iWl~s~l~~~p~~~~~~~~~~~~~~~~~C~~~~~ 227 (483)
......-+--+.+.++|+.|++---.|-.-+.. .+.+.....+..+.++.++-.+........... +..... ....
T Consensus 88 ~l~i~~~v~~lllsLLAIqRFllyFfP~~Ek~v~~~~k~~~~~I~~lY~~~~~k~i~~~~~~~~~~~--~~~~~~-~~~~ 164 (267)
T PF10325_consen 88 ILYIITQVFHLLLSLLAIQRFLLYFFPSSEKYVNFSQKNIKKIIWFLYIFFILKDIVFFIWYFISFN--NESTEE-IETF 164 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cccchh-hhHH
Confidence 344444555667899999999999998742222 344555555555555555443333222111111 110000 0011
Q ss_pred chhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q psy929 228 YGYQIYATLGSFYIPLTVMITVYYKIFCAARKIV 261 (483)
Q Consensus 228 ~~~~~~~~~~~~~lPl~ii~~~y~~I~~~lr~~~ 261 (483)
..+.....+... +-+.+-..+|+-|+..+||.+
T Consensus 165 ~~~~~~~~~~~~-~ll~~S~lLYIPI~isirK~~ 197 (267)
T PF10325_consen 165 SYIYVIFYIILN-ILLFLSALLYIPIFISIRKLS 197 (267)
T ss_pred HHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHhh
Confidence 111111122222 334566778999999998865
No 48
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=48.09 E-value=3.2e+02 Score=27.85 Aligned_cols=32 Identities=13% Similarity=0.108 Sum_probs=20.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHh
Q psy929 235 TLGSFYIPLTVMITVYYKIFCAARKIVAEEKR 266 (483)
Q Consensus 235 ~~~~~~lPl~ii~~~y~~I~~~lr~~~~~~~~ 266 (483)
.+..-++|++.++..-+|+.|..++++++..+
T Consensus 306 ~~~la~i~~i~l~~~vvR~vR~~~~hr~~~~~ 337 (374)
T PF01528_consen 306 AINLAVIAIICLIMMVVRLVRAFLYHRRRSTR 337 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 33334567777777777888877776543333
No 49
>KOG1935|consensus
Probab=43.86 E-value=9.2 Score=42.10 Aligned_cols=35 Identities=37% Similarity=0.720 Sum_probs=28.5
Q ss_pred ccccccchhhHHhhhhhhcccC----CCCCCCcceeecc
Q psy929 422 SGIRDNRRFDEIFHQKFVSSVF----PNEKLPDFWLCLF 456 (483)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 456 (483)
..+-.+||.-+.|||.|.++-+ +||++|+||+-+|
T Consensus 709 ~dyp~qQ~ll~dyh~sf~s~k~vik~~n~~l~~~Wl~~~ 747 (1143)
T KOG1935|consen 709 FDYPHQQQLLDDYHQSFGSSKYVIKNENEQLPKYWLHLF 747 (1143)
T ss_pred CCcccHHHHHHHHHHHhccCceeecCCCCCCchHHHHHH
Confidence 4456788889999999998853 6678999999876
No 50
>PF06454 DUF1084: Protein of unknown function (DUF1084); InterPro: IPR009457 This entry consists of several hypothetical plant specific proteins of unknown function.
Probab=42.20 E-value=3.3e+02 Score=26.44 Aligned_cols=19 Identities=16% Similarity=0.391 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy929 69 QALIIGLILLIIIIVTIVG 87 (483)
Q Consensus 69 ~~~~l~~~~~li~v~gl~g 87 (483)
....++.+|.++++++++-
T Consensus 27 ~~~~La~iy~~v~~~aliQ 45 (281)
T PF06454_consen 27 LFYALAAIYLLVALVALIQ 45 (281)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455666676666666544
No 51
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=42.15 E-value=30 Score=29.07 Aligned_cols=21 Identities=14% Similarity=0.146 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHhcCCCcc
Q psy929 83 VTIVGNILVCIAVCIVRKLRR 103 (483)
Q Consensus 83 ~gl~gN~lvi~vi~~~~~lrt 103 (483)
.|++|=+++|+.++++++.|.
T Consensus 75 aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 75 AGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHHHHHHhccC
Confidence 444554444444443333343
No 52
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=33.37 E-value=4.7e+02 Score=25.71 Aligned_cols=67 Identities=15% Similarity=0.220 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCcccchhhHHHH
Q psy929 77 LLIIIIVTIVGNILVCIAVCIVRKLRRPCNYLLVSLA-VSDLCVAILVMPMALLYEVSGKWNFGFMMCNLW 146 (483)
Q Consensus 77 ~~li~v~gl~gN~lvi~vi~~~~~lrt~~~ill~nLa-vaDll~~~~~~p~~i~~~~~~~~~~~~~~C~~~ 146 (483)
.++++++|++.|.+..+.+.+.+. ...|.=-..|- ++|++..+..+...+...+. +|..-+..+.+.
T Consensus 127 ml~va~~GL~vN~~~a~ll~~~~~--~~lN~r~a~LHvl~D~Lgsv~vIia~i~i~~~-~w~~~Dpi~si~ 194 (296)
T COG1230 127 MLVVAIIGLVVNLVSALLLHKGHE--ENLNMRGAYLHVLGDALGSVGVIIAAIVIRFT-GWSWLDPILSIV 194 (296)
T ss_pred hHHHHHHHHHHHHHHHHHhhCCCc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCccchHHHHH
Confidence 346788999999999998887611 23344334444 48998877666555555544 454455544443
No 53
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=25.55 E-value=2.2e+02 Score=19.19 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhh
Q psy929 239 FYIPLTVMITVYYKIFCAARKIV 261 (483)
Q Consensus 239 ~~lPl~ii~~~y~~I~~~lr~~~ 261 (483)
.++-+.+.+..-..|+..+++.+
T Consensus 11 vvIil~If~~iGl~IyQkikqIr 33 (49)
T PF11044_consen 11 VVIILGIFAWIGLSIYQKIKQIR 33 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555556666666554
No 54
>PHA03237 envelope glycoprotein M; Provisional
Probab=25.26 E-value=7.8e+02 Score=25.52 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhh
Q psy929 239 FYIPLTVMITVYYKIFCAARKIV 261 (483)
Q Consensus 239 ~~lPl~ii~~~y~~I~~~lr~~~ 261 (483)
-++|++.++..-+|+.|...-|+
T Consensus 333 aviail~l~m~vvRlvRa~~yHr 355 (424)
T PHA03237 333 AIFAVIIVIMLVVRLVRACLYHR 355 (424)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666777777665443
No 55
>PF09882 DUF2109: Predicted membrane protein (DUF2109); InterPro: IPR019214 This entry is found in various hypothetical archaeal proteins and has no known function.
Probab=23.77 E-value=1.9e+02 Score=22.08 Aligned_cols=47 Identities=19% Similarity=0.312 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy929 80 IIIVTIVGNILVCIAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPM 126 (483)
Q Consensus 80 i~v~gl~gN~lvi~vi~~~~~lrt~~~ill~nLavaDll~~~~~~p~ 126 (483)
..++|+++=...+-++..+.+.++-.++-..|-|++.++...+--|+
T Consensus 3 ~~i~g~Iai~~~iR~~~~~~r~~KL~yLnv~~F~iaalIaL~i~~P~ 49 (78)
T PF09882_consen 3 IIIIGIIAILMAIRIFLTKSRARKLLYLNVINFAIAALIALYIKSPM 49 (78)
T ss_pred hHHHHHHHHHHHHHHHHhHhHHHhhhHHHHHHHHHHHHHHHHhCCcH
Confidence 34566666667777777777778888888889999998775443343
No 56
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=23.28 E-value=40 Score=25.74 Aligned_cols=28 Identities=11% Similarity=-0.055 Sum_probs=21.9
Q ss_pred HHHhhhhhhhhhhhhhhhhhcccc-chhh
Q psy929 325 QCKRKNKANKYQEIQESLDLDCTS-EYFT 352 (483)
Q Consensus 325 ~~~~~~k~~k~l~iiv~vflicwl-P~~i 352 (483)
.+++-+|..+.+++--++|+++|+ |+..
T Consensus 3 ~r~~i~r~lr~mfiYP~~Yi~lwlfP~~~ 31 (76)
T PF11970_consen 3 RRKRIRRQLRSMFIYPLVYIVLWLFPFAA 31 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566788889999999999999 6443
No 57
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=20.37 E-value=8e+02 Score=23.84 Aligned_cols=21 Identities=14% Similarity=0.316 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHheeeCC
Q psy929 155 TASILNLCMISVDRYYAITKP 175 (483)
Q Consensus 155 ~~S~~~l~~IsidRy~aI~~P 175 (483)
.+-+|.++++.+|||+...-.
T Consensus 51 ~glvwgl~I~~lDR~ivss~~ 71 (301)
T PF14362_consen 51 FGLVWGLVIFNLDRFIVSSIR 71 (301)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 346778899999999876543
No 58
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=20.31 E-value=2.8e+02 Score=20.92 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=19.6
Q ss_pred hhhhhhhhhhhHHHHHH-HHHHHHHHHHHHhhhHHH
Q psy929 230 YQIYATLGSFYIPLTVM-ITVYYKIFCAARKIVAEE 264 (483)
Q Consensus 230 ~~~~~~~~~~~lPl~ii-~~~y~~I~~~lr~~~~~~ 264 (483)
|..+..++..+.|+.++ .++-.+..+.+.+..++.
T Consensus 20 ~~Fl~~vll~LtPlfiisa~lSwkLaK~ie~~ere~ 55 (74)
T PF15086_consen 20 YEFLTTVLLILTPLFIISAVLSWKLAKAIEKEEREK 55 (74)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555567775544 455566666665554433
No 59
>KOG3609|consensus
Probab=20.16 E-value=1.1e+03 Score=26.50 Aligned_cols=83 Identities=10% Similarity=0.134 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhcCCcccchhhHHHHH-HHHHHHHHHHHHHHHHHHH-HHHheeeCCcccceeeccchhhhhhHHHHHHH
Q psy929 121 ILVMPMALLYEVSGKWNFGFMMCNLWV-SFDVLSCTASILNLCMISV-DRYYAITKPLEYGVKRTPKRMILCVVFVWLGA 198 (483)
Q Consensus 121 ~~~~p~~i~~~~~~~~~~~~~~C~~~~-~l~~~~~~~S~~~l~~Isi-dRy~aI~~P~~y~~~~t~~~~~~~i~~iWl~s 198 (483)
++..+..+.+.+...-..|..+|+-.. |+.+...+...+.+..++- +++. .+. ++..-......=+.++.|+.+
T Consensus 321 ~~~P~~~l~yllap~S~~G~~~r~PfmKFi~H~~Sy~~FL~LL~l~s~~~~~---~~~-~~~~g~~p~~vE~li~~wV~G 396 (822)
T KOG3609|consen 321 LCFPMPSLVYLLAPMSRKGTTMRKPFMKFIAHITSYLVFLILLILASLIGFY---FAW-TDSRGVTPQALEILIYLWVMG 396 (822)
T ss_pred HHhHHHHHHHHhCCCCcccchhhchHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhh-hcccCCCCcHHHHHHHHHHHH
Confidence 344555667777766677777775433 5566655555555544443 4443 222 333333445556778899999
Q ss_pred HHHHHhhHh
Q psy929 199 ACISLPPLI 207 (483)
Q Consensus 199 ~l~~~p~~~ 207 (483)
++++=..-+
T Consensus 397 ~iw~E~k~l 405 (822)
T KOG3609|consen 397 LIWEEIKEL 405 (822)
T ss_pred HHHHHHHHH
Confidence 888865544
Done!