RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy929
(483 letters)
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 290 bits (744), Expect = 3e-93
Identities = 78/305 (25%), Positives = 136/305 (44%), Gaps = 16/305 (5%)
Query: 33 SPHNISRFSLTNDTSPASFHNYTRLGLLSHSPYSPLQALIIGLILLIIIIVTIVGNILVC 92
P N S F L + S A H+ T + + +G+++ +I++ + GN+LV
Sbjct: 10 QPGNGSAFLLAPNRSHAPDHDVT-------QQRDEVWVVGMGIVMSLIVLAIVFGNVLVI 62
Query: 93 IAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVL 152
A+ +L+ NY + SLA +DL + + V+P + + W FG C W S DVL
Sbjct: 63 TAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVL 122
Query: 153 SCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGND 212
TASI LC+I+VDRY+AIT P +Y T + + ++ VW+ + S P+ +
Sbjct: 123 CVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYR 182
Query: 213 YREDNGVSF------CSVCQNYGYQIYATLGSFYIPLTVMITVYYKIFCAARKIVAEEKR 266
++ C N Y I +++ SFY+PL +M+ VY ++F A++ +
Sbjct: 183 ATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQL---NI 239
Query: 267 AQSHIIMEHCYLQIHNNSSPATNSNRGHTHRTSTTSTNTTGRWKPGGCRKWLRTQDRVQC 326
+ I E L+I+ ++ GH S + R + +
Sbjct: 240 FEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEA 299
Query: 327 KRKNK 331
++
Sbjct: 300 EKLFN 304
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 286 bits (733), Expect = 6e-92
Identities = 72/267 (26%), Positives = 128/267 (47%), Gaps = 6/267 (2%)
Query: 53 NYTRLGLLSHSPYSPLQALIIGLILLIIIIVTIVGNILVCIAVCIVRKLRRPCNYLLVSL 112
+ + L SPY + + I L+ + +VTI+GNILV +++ + R L+ NY L SL
Sbjct: 6 DSSDNSLALTSPYKTFEVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSL 65
Query: 113 AVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLSCTASILNLCMISVDRYYAI 172
A +DL + + M + LY V G W G ++C+LW++ D + AS++NL +IS DRY+ +
Sbjct: 66 ACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCV 125
Query: 173 TKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLI---VLGNDYREDNGVSFCSVCQNYG 229
TKPL Y VKRT K + + W+ + + P ++ + ++G + N
Sbjct: 126 TKPLTYPVKRTTKMAGMMIAAAWVLSFILWAPAILFWQFIVGVRTVEDGECYIQFFSNAA 185
Query: 230 YQIYATLGSFYIPLTVMITVYYKIFCAARKIVAEEKRAQSHIIMEHCYLQIHNNSSPATN 289
+ +FY+P+ +M +Y+ I A++ + + + E L+I+ ++
Sbjct: 186 VTFGTAIAAFYLPVIIMTVLYWHISRASKSRINIFEMLRID---EGLRLKIYKDTEGYYT 242
Query: 290 SNRGHTHRTSTTSTNTTGRWKPGGCRK 316
GH S + R
Sbjct: 243 IGIGHLLTKSPSLNAAKSELDKAIGRN 269
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 284 bits (727), Expect = 3e-91
Identities = 67/258 (25%), Positives = 116/258 (44%), Gaps = 6/258 (2%)
Query: 63 SPYSPLQALIIGLILLIIIIVTIVGNILVCIAVCIVRKLRRPCNYLLVSLAVSDLCVAIL 122
+ + Q + + ++L I +VT+ N+LV AV RKL N +VSL+V+DL V +
Sbjct: 1 TTMASPQLMPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAV 60
Query: 123 VMPMALLYEVSGKWNFGFMMCNLWVSFDVLSCTASILNLCMISVDRYYAITKPLEYGVKR 182
VMPM +LY + KW+ G +C W+S D ++ TASI ++ ++ +DRY ++ +PL Y R
Sbjct: 61 VMPMNILYLLMSKWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYR 120
Query: 183 TPKRMILCVVFVWLGAACISLPPLI---VLGNDYREDNGVSFCSVCQNYGYQIYATLGSF 239
T R ++ W + +P L + +++ + +F
Sbjct: 121 TKTRASATILGAWFLSFLWVIPILGWNHFMQQTSVRREDKCETDFYDVTWFKVMTAIINF 180
Query: 240 YIPLTVMITVYYKIFCAARKIVAEEKRAQSHIIMEHCYLQIHNNSSPATNSNRGHTHRTS 299
Y+P +M+ Y KI+ A R+ + I E L+I+ ++ GH S
Sbjct: 181 YLPTLLMLWFYAKIYKAVRQ---HCNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKS 237
Query: 300 TTSTNTTGRWKPGGCRKW 317
+ R
Sbjct: 238 PSLNAAKSELDKAIGRNT 255
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 284 bits (727), Expect = 2e-90
Identities = 68/272 (25%), Positives = 125/272 (45%), Gaps = 8/272 (2%)
Query: 44 NDTSPASFHNYT--RLGLLSHSPYSPLQALIIGLILLIIIIVTIVGNILVCIAVCIVRKL 101
N T + T R G + + +G+++ +I++ + GN+LV A+ +L
Sbjct: 154 NQTPNRAKRVITTFRTGTWDAYAADEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERL 213
Query: 102 RRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLSCTASILNL 161
+ NY + SLA +DL + + V+P + ++ W FG C W S DVL TASI L
Sbjct: 214 QTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIETL 273
Query: 162 CMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGND------YRE 215
C+I+VDRY+AIT P +Y T + + ++ VW+ + S P+ +
Sbjct: 274 CVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINC 333
Query: 216 DNGVSFCSVCQNYGYQIYATLGSFYIPLTVMITVYYKIFCAARKIVAEEKRAQSHIIMEH 275
+ C N Y I +++ SFY+PL +M+ VY ++F A++ + + +++ +++
Sbjct: 334 YAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQN 393
Query: 276 CYLQIHNNSSPATNSNRGHTHRTSTTSTNTTG 307
+ + + T G
Sbjct: 394 LSQVEQDGRTGHGLRRSSKFCLKEHKALKTLG 425
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 272 bits (695), Expect = 4e-86
Identities = 80/272 (29%), Positives = 129/272 (47%), Gaps = 12/272 (4%)
Query: 43 TNDTSPASFHNYTRLGLLSHSPYSPLQALIIGLILLIIIIVTIVGNILVCIAVCIVRKLR 102
+ + +S NYT S L +I+ + GN LVC+AV R L+
Sbjct: 11 ASLSQLSSHLNYTCGAENSTGASQARPHAYYALSYCALILAIVFGNGLVCMAVLKERALQ 70
Query: 103 RPCNYLLVSLAVSDLCVAILVMPMALLYEVSG-KWNFGFMMCNLWVSFDVLSCTASILNL 161
NYL+VSLAV+DL VA LVMP + EV+G WNF + C+++V+ DV+ CTASI NL
Sbjct: 71 TTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTASIWNL 130
Query: 162 CMISVDRYYAITKPLEYG---VKRTPKRMILCVVFVWLGAACISLPPLIVLGNDYREDNG 218
C IS+DRY A+ P+ Y + + +R+ L + VW+ A +S P L
Sbjct: 131 CAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLLFGFNTTGDPT-- 188
Query: 219 VSFCSVCQNYGYQIYATLGSFYIPLTVMITVYYKIFCAARKIVAEEKRAQSHIIMEHCYL 278
N + IY+++ SFY+P V + VY +I+ ++ ++ ++ L
Sbjct: 189 ---VCSISNPDFVIYSSVVSFYLPFGVTVLVYARIYVVLKQ---RRRKNIFEMLRIDEGL 242
Query: 279 QIHNNSSPATNSNRGHTHRTSTTSTNTTGRWK 310
++ G H + + + + +
Sbjct: 243 RLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSE 274
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 265 bits (678), Expect = 1e-85
Identities = 68/228 (29%), Positives = 113/228 (49%), Gaps = 6/228 (2%)
Query: 60 LSHSPYSPLQALIIGLILLIIIIVTIVGNILVCIAVCIVRKLRRPCNYLLVSLAVSDLCV 119
+ S + L++ +++++ + GN+LV A+ ++L+ N + SLA +DL V
Sbjct: 1 MGAELLSQQWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVV 60
Query: 120 AILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLSCTASILNLCMISVDRYYAITKPLEYG 179
+LV+P V G W +G +C LW S DVL TASI LC+I++DRY AIT P Y
Sbjct: 61 GLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQ 120
Query: 180 VKRTPKRMILCVVFVWLGAACISLPPLIVLGND------YREDNGVSFCSVCQNYGYQIY 233
T R + + VW +A +S P+++ + C N Y I
Sbjct: 121 SLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIA 180
Query: 234 ATLGSFYIPLTVMITVYYKIFCAARKIVAEEKRAQSHIIMEHCYLQIH 281
+++ SFYIPL +MI V +++ A++ + + RA ++ H
Sbjct: 181 SSIISFYIPLLIMIFVALRVYREAKEQIRKIDRASKRKTSRVMLMREH 228
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 264 bits (676), Expect = 1e-83
Identities = 64/320 (20%), Positives = 112/320 (35%), Gaps = 25/320 (7%)
Query: 42 LTNDTSPASFHNYTRLGLLSHSPYSPLQALIIGLILLIIIIVTIVGNILVCIAVCIVRKL 101
+ + +P ++ I + L I ++ I+GN+LVC AV + L
Sbjct: 5 IALSYIFCLVFADYK-DDDDGAPPIMGSSVYITV-ELAIAVLAILGNVLVCWAVWLNSNL 62
Query: 102 RRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLSCTASILNL 161
+ NY +VSLA +D+ V +L +P A+ +S + C F ++ +SI +L
Sbjct: 63 QNVTNYFVVSLAAADIAVGVLAIPFAIT--ISTGFCAACHGCLFIACFVLVLTQSSIFSL 120
Query: 162 CMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDYREDNGVSF 221
I++DRY AI PL Y T R + W+ + I L P++ N + G +
Sbjct: 121 LAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNH 180
Query: 222 CSVCQ-------------NYGYQIYATLGSFYIPLTVMITVYYKIFCAARKIVAEEKRAQ 268
C + +PL +M+ VY +IF AAR+ Q
Sbjct: 181 SQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARR--------Q 232
Query: 269 SHIIMEHCYLQIHNNSSPATNSNRGHTHRTSTTSTNTTGRWKPGGCRKWLRTQDRVQCKR 328
+ ++ N N T + K +
Sbjct: 233 LADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMK 292
Query: 329 KNKANKYQEIQESLDLDCTS 348
+ + + D +
Sbjct: 293 DFRHGFDILVGQIDDALKLA 312
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 258 bits (660), Expect = 6e-81
Identities = 62/303 (20%), Positives = 118/303 (38%), Gaps = 16/303 (5%)
Query: 52 HNYTRLGLLSHSPYSPLQALIIGLILLIIIIVTIVGNILVCIAVCIVRKLRRPCNYLLVS 111
+ +G +P ++ I + L I ++ I+GN+LVC AV + L+ NY +VS
Sbjct: 4 DDDDAMGQPVGAPPIMGSSVYITV-ELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVS 62
Query: 112 LAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLSCTASILNLCMISVDRYYA 171
LA +D+ V +L +P A+ +S + C F ++ +SI +L I++DRY A
Sbjct: 63 LAAADIAVGVLAIPFAIT--ISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIA 120
Query: 172 ITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDYREDNGVSFCSVCQ----- 226
I PL Y T R + W+ + I L P++ N + G + C
Sbjct: 121 IRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVA 180
Query: 227 -------NYGYQIYAT-LGSFYIPLTVMITVYYKIFCAARKIVAEEKRAQSHIIMEHCYL 278
Y +Y +PL +M+ VY +IF AAR+ + + + +
Sbjct: 181 CLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLNIFEMLRIDEGLRLKIY 240
Query: 279 QIHNNSSPATNSNRGHTHRTSTTSTNTTGRWKPGGCRKWLRTQDRVQCKRKNKANKYQEI 338
+ + + + + + + + + ++ + I
Sbjct: 241 KDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGI 300
Query: 339 QES 341
+
Sbjct: 301 LRN 303
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 212 bits (540), Expect = 6e-63
Identities = 52/294 (17%), Positives = 102/294 (34%), Gaps = 10/294 (3%)
Query: 12 FSLTNDTSPQTHSPEVCMDSFSPHNISRFSLTNDTSPASFHNYTRLGLLSHSPYSPLQAL 71
F L +P S + H S N +NYT G L+ S
Sbjct: 11 FCLVFAGAPGPTSVPL----VKAHRSSVSDYVNYDIIVRHYNYT--GKLNISADKENSIK 64
Query: 72 IIGLILLIIIIVTIVGNILVCIAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYE 131
+ ++ ++I I+ NI V + + +K RP Y + +LA+SDL + LL
Sbjct: 65 LTSVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLSG 124
Query: 132 VSGKWNFGFMMCNLWVSFDVLSCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCV 191
+ L ++ +AS+ +L I+++RY + K + R+ L +
Sbjct: 125 A-TTYKLTPAQWFLREGSMFVALSASVFSLLAIAIERYITMLKMKLHN-GSNNFRLFLLI 182
Query: 192 VFVWLGAACISLPPLIVLGNDYREDNGVSFCSVCQNYGYQIYATLGSFYIPLTVMITVYY 251
W+ + + P++ N + S + Y ++ T F + L ++ +Y
Sbjct: 183 SACWVISLILGGLPIMGW-NCISALSSCSTVLPLYHKHYILFCTT-VFTLLLLSIVILYC 240
Query: 252 KIFCAARKIVAEEKRAQSHIIMEHCYLQIHNNSSPATNSNRGHTHRTSTTSTNT 305
+I+ R E + Y + + + +
Sbjct: 241 RIYSLVRTRNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSEL 294
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 164 bits (417), Expect = 1e-46
Identities = 52/216 (24%), Positives = 96/216 (44%), Gaps = 10/216 (4%)
Query: 62 HSPYSPLQALIIGLILLIIIIVTIVGNILVCIAVCIVRKLRRPCNYLLVSLAVSDLCVAI 121
+ P Q ++ + ++I++ N L +KLR P NY+L++LAV+DL +
Sbjct: 30 YYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVF 89
Query: 122 LVMPMALLYEVSGKWNFGFMMCNLWVSFDVLSCTASILNLCMISVDRYYAITKPLEYGVK 181
L + G + FG CNL F L ++ +L +++++RY + KP+ +
Sbjct: 90 GGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPM-SNFR 148
Query: 182 RTPKRMILCVVFVWLGAACISLPPLIVLGNDYREDNGVSFCSVC--------QNYGYQIY 233
I+ V F W+ A + PPL+ E S C + N + IY
Sbjct: 149 FGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCS-CGIDYYTPHEETNNESFVIY 207
Query: 234 ATLGSFYIPLTVMITVYYKIFCAARKIVAEEKRAQS 269
+ F IPL V+ Y ++ ++ A+++ + +
Sbjct: 208 MFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESAT 243
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 160 bits (405), Expect = 3e-44
Identities = 45/206 (21%), Positives = 86/206 (41%), Gaps = 8/206 (3%)
Query: 61 SHSPYSPLQALIIGLILLIIIIVTIVGNILVCIAVCIVRKLRRPCNYLLVSLAVSDLCVA 120
+G+ + I I+ GN +V + L+ P N +++LA SD +
Sbjct: 25 EFDQVPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFS 84
Query: 121 IL-VMPMALLYEVSGKWNFGFMMCNLWVSFDVLSCTASILNLCMISVDRYYAITKPLEYG 179
++ P+ + KW FGF C ++ + SI+ + MIS+DRY I +P+
Sbjct: 85 LVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAAS 144
Query: 180 VKRTPKRMILCVVFVWLGAACISLPPLIVLGNDYREDNGVSFCSV------CQNYGYQIY 233
K + +R + ++FVWL + ++ P+ G E + CS +
Sbjct: 145 KKMSHRRAFIMIIFVWLWSVLWAIGPIFGWGAYTLEGVLCN-CSFDYISRDSTTRSNILC 203
Query: 234 ATLGSFYIPLTVMITVYYKIFCAARK 259
+ F+ P+ ++ Y+ I +
Sbjct: 204 MFILGFFGPILIIFFCYFNIVMSVSN 229
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 157 bits (400), Expect = 4e-44
Identities = 47/233 (20%), Positives = 92/233 (39%), Gaps = 22/233 (9%)
Query: 29 MDSFSPHNISRFSLTNDTSPASFHNYTRLGLLSHSPYSPLQALIIGLILLIIIIVTIVGN 88
MD+ P + N ++ S N Q ++ +I++ ++VGN
Sbjct: 1 MDNVLPVDSDLSP--NISTNTSEPNQFVQ--------PAWQIVLWAAAYTVIVVTSVVGN 50
Query: 89 ILVCIAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVS 148
++V + +++R NY LV+LA ++ +A + Y V +W +G C
Sbjct: 51 VVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNF 110
Query: 149 FDVLSCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIV 208
F + + ASI ++ ++ DRY AI PL + + + + +W+ A ++ P
Sbjct: 111 FPIAAVFASIYSMTAVAFDRYMAIIHPL--QPRLSATATKVVICVIWVLALLLAFPQGYY 168
Query: 209 LGNDYREDNGVSFCSVC--------QNYGYQIYATLGSFYIPLTVMITVYYKI 253
C + Y I T+ +++PL V+ Y +
Sbjct: 169 S--TTETMPSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVV 219
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 137 bits (346), Expect = 1e-35
Identities = 52/263 (19%), Positives = 105/263 (39%), Gaps = 19/263 (7%)
Query: 61 SHSPYSPLQALIIGLILLIIIIVTIVGNILVCIAVCIVRKLRRPCNYLLVSLAVSDLCVA 120
S + A+ I + I+ +V + GN LV + K++ N + +LA++D
Sbjct: 8 QTGSPSMVTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALA- 66
Query: 121 ILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLSCTASILNLCMISVDRYYAITKPLEYGV 180
+P + + G W FG ++C + +S D + SI LC +SVDRY A+ P++
Sbjct: 67 TSTLPFQSVNYLMGTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALD 126
Query: 181 KRTPKRMILCVVFVWLGAACISLPPLIVLGNDYREDNGVSFCSVC-------QNYGYQIY 233
RTP+ + V W+ ++ I LP + + G C++ +I
Sbjct: 127 FRTPRNAKIVNVCNWILSSAIGLPVMF--MATTKYRQGSIDCTLTFSHPTWYWENLLKIC 184
Query: 234 ATLGSFYIPLTVMITVYYKIFCAARKIVAEEKRAQSHIIMEHCY---------LQIHNNS 284
+ +F +P+ ++ Y + + + + + + + I +
Sbjct: 185 VFIFAFIMPVLIITVCYGLMILRLKSVRNIFEMLRIDEGLRLKIYKNTEGYYTIGIGHLL 244
Query: 285 SPATNSNRGHTHRTSTTSTNTTG 307
+ + + N + NT G
Sbjct: 245 TKSPSLNAAKSELDKAIGRNTNG 267
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 132 bits (334), Expect = 3e-34
Identities = 50/232 (21%), Positives = 90/232 (38%), Gaps = 11/232 (4%)
Query: 30 DSFSPHNISRFSLTNDTSPASFHNYTRLGLLSHSPYSPL-QALIIGLILLIIIIVTIVGN 88
D+ N + + + PL + I + L + + ++GN
Sbjct: 84 DALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLGAFLPLGLKVTIVGLYLAVCVGGLLGN 143
Query: 89 ILVCIAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVS 148
LV + K++ N + +LA++D V +L +P + G W FG +C ++
Sbjct: 144 CLVMYVILRHTKMKTATNIYIFNLALADTLV-LLTLPFQGTDILLGFWPFGNALCKTVIA 202
Query: 149 FDVLSCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIV 208
D + S L +SVDRY AI P+ RT + V +W A+ + +P I+
Sbjct: 203 IDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALASVVGVPVAIM 262
Query: 209 LGNDYREDNGVSFCSVC-------QNYGYQIYATLGSFYIPLTVMITVYYKI 253
+ ++ C V + I L SF +P+ V+ Y +
Sbjct: 263 --GSAQVEDEEIECLVEIPTPQDYWGPVFAICIFLFSFIVPVLVISVCYSLM 312
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 132 bits (334), Expect = 6e-34
Identities = 52/253 (20%), Positives = 94/253 (37%), Gaps = 10/253 (3%)
Query: 30 DSFSPHNISRFSLTNDTSPASFHNYTRLGLL-SHSPYSPLQALIIGLILLIIIIVTIVGN 88
D+ +P IS ++ N T +Y + + + + I II + IVGN
Sbjct: 7 DAGAPEGISIYTSDNYTEEMGSGDYDSMKEPCFREENANFNKIFLPTIYSIIFLTGIVGN 66
Query: 89 ILVCIAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVS 148
LV + + +KLR + + L+V+DL ++ +P + V+ W FG +C
Sbjct: 67 GLVILVMGYQKKLRSMTDKYRLHLSVADLLF-VITLPFWAVDAVAN-WYFGNFLCKAVHV 124
Query: 149 FDVLSCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIV 208
++ +S+ L IS+DRY AI R + V VW+ A +++P I
Sbjct: 125 IYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIF 184
Query: 209 LGNDYREDNGVSFCSV-----CQNYGYQIYATLGSFYIPLTVMITVYYKIFCAARKIVAE 263
+ E + C +Q + +P V+++ Y I +
Sbjct: 185 --ANVSEADDRYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSN 242
Query: 264 EKRAQSHIIMEHC 276
Sbjct: 243 IFEMLRIDEGLRL 255
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein;
NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A
Length = 32
Score = 64.0 bits (156), Expect = 1e-13
Identities = 19/32 (59%), Positives = 29/32 (90%)
Query: 155 TASILNLCMISVDRYYAITKPLEYGVKRTPKR 186
T+SI++LC IS+DRY++IT+ +EY +KRTP+R
Sbjct: 1 TSSIVHLCAISLDRYWSITQAIEYNLKRTPRR 32
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.9 bits (118), Expect = 2e-06
Identities = 81/555 (14%), Positives = 153/555 (27%), Gaps = 189/555 (34%)
Query: 14 LTNDTSPQTHSPEVCMDSFSPHNISRFSLTNDTSPASFHNYTRLGLLSHSPYSPLQ-ALI 72
L + + P + + R L ND + +N +RL PY L+ AL
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQ---RDRLYNDNQVFAKYNVSRL-----QPYLKLRQAL- 144
Query: 73 IGLILLIIIIVTIVG------NILVCIAVC--IVRKLRRPCNYLLVSLAVSDLCVAILVM 124
L L V I G + + VC + + ++L + +L M
Sbjct: 145 --LELRPAKNVLIDGVLGSGKTWVA-LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 125 PMALLYEVSGKWNFG--------------------FMM--------------CNLWV--S 148
LLY++ W + N +
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 149 FDVLSCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMI-LCVVFV----------WLG 197
F+ LSC IL + + R+ +T L T + + +L
Sbjct: 262 FN-LSCK--IL---LTT--RFKQVTDFLS-AATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 198 AACISLP-------PLIV--LGNDYREDNGVSFCSVCQNYGY------------------ 230
LP P + + R+ N+ +
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATW-----DNWKHVNCDKLTTIIESSLNVLE 367
Query: 231 -----QIYATLGSF----YIPLTVMITV-YYKIFCAARKIVAE-------EKRAQSHIIM 273
+++ L F +IP ++ + + I +V + EK+ + I
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
Query: 274 EH-CYLQIHNNSSPATNSNRGHTHRTSTTSTNTTGRWKPGGCRKWLRTQDRVQCKRKNKA 332
YL++ N HR+ + + +
Sbjct: 428 IPSIYLELK-----VKLENEYALHRS-------------------IVDHYNIPKTFDS-- 461
Query: 333 NKYQEIQESLDLDCTSEYFTRTLEVNDFQ------LNLKRARRKAL---LFVSLSQLGTV 383
+ L +YF + N++ R L +F+ L
Sbjct: 462 -------DDLIPPYLDQYF--------YSHIGHHLKNIEHPERMTLFRMVFLDFRFLE-- 504
Query: 384 SKSRPKSYEWDLCEKVVPSL---KGYEQNFVGTFRELGGLVSGIRDN-RRFDE-IFHQKF 438
K R S W+ ++ +L K Y+ + LV+ I D + +E + K+
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY 564
Query: 439 VSSV-----FPNEKL 448
+ +E +
Sbjct: 565 TDLLRIALMAEDEAI 579
Score = 39.8 bits (92), Expect = 0.002
Identities = 57/373 (15%), Positives = 111/373 (29%), Gaps = 120/373 (32%)
Query: 137 NFGFMMCNLWVSFDVLSCTASILNLCMIS-VDRYYAITKPL-EYGVKRTPKRMILCVVFV 194
N+ F L S++ I DR Y + +Y V R ++
Sbjct: 90 NYKF----LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP-------YL 138
Query: 195 WLGAACISLPP--LIVLGNDYREDNGVSFC-------SVCQNY------GYQIY-ATLGS 238
L A + L P +++ +GV VC +Y ++I+ L +
Sbjct: 139 KLRQALLELRPAKNVLI-------DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 239 FYIPLTVMI---TVYYKI---FCAA-------RKIVAEEKRAQSHIIME----HCYLQIH 281
P TV+ + Y+I + + + + + ++ +C L +
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 282 NNSSPATNSNRGHTHRTSTTSTNTTGRWKP--GGCRKWLRTQDRVQCKRKNKANKYQEI- 338
N + W C+ L T+ + Q A I
Sbjct: 252 NVQNAKA--------------------WNAFNLSCKILLTTRFK-QVTDFLSAATTTHIS 290
Query: 339 ----QESLDLDCTSEYFTRTLEVNDFQLNLKRARRKALLFVSLSQLGTVSKSRPKSYE-W 393
+L D + L+ L + +S+ + + +++ W
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLP-REVLTTNPRRLSI--IAESIRDGLATWDNW 347
Query: 394 D--LCEKV-------VPSLKGYEQNFVGTFRELGGLVSGIRDNRRFDEIFHQKFVSSVFP 444
C+K+ + L+ E +R++ FD + SVFP
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAE------YRKM------------FDRL-------SVFP 382
Query: 445 -NEKLPDFWLCLF 456
+ +P L L
Sbjct: 383 PSAHIPTILLSLI 395
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 2e-06
Identities = 66/364 (18%), Positives = 119/364 (32%), Gaps = 109/364 (29%)
Query: 7 HNISRFSLTNDTSPQTHSPEVCMDSFSPHNISRFSLTNDTSPASFHN--------YTRLG 58
H ++ L + + + E+ + + +++ ++ A F G
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161
Query: 59 -----------LLS-HSPYSPL-QALI--IGLILLIIIIVTIVGNILVCIAVCIVRKLRR 103
L + Y L LI L +I T+ + + I+ L
Sbjct: 162 GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Query: 104 P-----CNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFD-VLSCTAS 157
P +YLL S+ +S C I V+ +A Y V+ K GF L +
Sbjct: 222 PSNTPDKDYLL-SIPIS--CPLIGVIQLAH-YVVTAK-LLGFTPGELRSYLKGATGHSQG 276
Query: 158 ILNLCMISV----DRYYAITKPLEYGVKRTPKRMILCVVFVWLGAAC------ISLPPLI 207
++ I+ + ++ R + V+F ++G C SLPP I
Sbjct: 277 LVTAVAIAETDSWESFFVSV------------RKAITVLF-FIGVRCYEAYPNTSLPPSI 323
Query: 208 VLGNDYREDN-----------GVSFCSVCQNY----------GYQIYATL--G--SFYI- 241
+ D E+N ++ V Q+Y G Q+ +L G + +
Sbjct: 324 L--EDSLENNEGVPSPMLSISNLTQEQV-QDYVNKTNSHLPAGKQVEISLVNGAKNLVVS 380
Query: 242 --PLTVMITVYYKIFCAARKIVAEEKRAQSHIIME-------HCYLQIHNNSSPATNSNR 292
P ++ Y + RK A QS I + +L + +SP
Sbjct: 381 GPPQSL-----YGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPV---ASPF----- 427
Query: 293 GHTH 296
H+H
Sbjct: 428 -HSH 430
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 38.6 bits (89), Expect = 0.002
Identities = 18/67 (26%), Positives = 23/67 (34%), Gaps = 12/67 (17%)
Query: 315 RKWLRTQD-RVQCKRKNKANKYQEIQESL--DLDCTSEYFTRTLEVNDFQL--NLKRARR 369
RKW Q R+Q QE +E DL+ E+ R E Q+ N R
Sbjct: 88 RKWREEQRKRLQELDAASKVMEQEWREKAKKDLE---EWNQRQSE----QVEKNKINNRI 140
Query: 370 KALLFVS 376
F
Sbjct: 141 ADKAFYQ 147
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound,
amino-acid transport, cell inner membrane, cell
membrane, membrane; HET: ARG BNG; 3.00A {Escherichia
coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A
3ncy_A
Length = 445
Score = 28.5 bits (64), Expect = 5.0
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 59 LLSHSPYSPLQALIIGLILLIIIIVTIVGNILVCIAVCIVRK----LRRPCNYLLVSLAV 114
+ S SP GL+ + +I T+V + C A+ ++ RP + ++A
Sbjct: 336 IFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAYLAVTTIAF 395
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.137 0.431
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,258,920
Number of extensions: 420148
Number of successful extensions: 895
Number of sequences better than 10.0: 1
Number of HSP's gapped: 864
Number of HSP's successfully gapped: 25
Length of query: 483
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 386
Effective length of database: 3,993,456
Effective search space: 1541474016
Effective search space used: 1541474016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.9 bits)