RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy929
         (483 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 91.6 bits (226), Expect = 7e-21
 Identities = 52/218 (23%), Positives = 94/218 (43%), Gaps = 8/218 (3%)

Query: 66  SPLQALIIGLILLIIIIVTIVGNILVCIAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMP 125
            P Q  ++   + ++I++    N L        +KLR P NY+L++LAV+DL +      
Sbjct: 33  EPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFT 92

Query: 126 MALLYEVSGKWNFGFMMCNLWVSFDVLSCTASILNLCMISVDRYYAITKPLEYGVKRTPK 185
             L   + G + FG   CNL   F  L    ++ +L +++++RY  + KP+    +    
Sbjct: 93  TTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSN-FRFGEN 151

Query: 186 RMILCVVFVWLGAACISLPPLIVLGNDYREDNGVSFCSVCQ-------NYGYQIYATLGS 238
             I+ V F W+ A   + PPL+       E    S             N  + IY  +  
Sbjct: 152 HAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVH 211

Query: 239 FYIPLTVMITVYYKIFCAARKIVAEEKRAQSHIIMEHC 276
           F IPL V+   Y ++    ++  A+++ + +    E  
Sbjct: 212 FIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKE 249


>d1zcza1 c.24.1.3 (A:1-157) IMP cyclohydrolase domain of
           bifunctional purine biosynthesis enzyme ATIC {Thermotoga
           maritima [TaxId: 2336]}
          Length = 157

 Score = 27.3 bits (60), Expect = 2.4
 Identities = 7/69 (10%), Positives = 17/69 (24%), Gaps = 5/69 (7%)

Query: 216 DNGVSFCSVCQNYGYQIYATLGSFYIPLTVMITVYYKIFCAARKIVAEEKRAQSHIIMEH 275
           +  +         G++I+A+ G+        +            I   E      +   H
Sbjct: 12  EKYLDILRELHEKGWEIWASSGTA-----KFLKSNGIEANDVSTITGFENLLGGLVKTLH 66

Query: 276 CYLQIHNNS 284
             +      
Sbjct: 67  PEIFAGILG 75


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.137    0.431 

Gapped
Lambda     K      H
   0.267   0.0544    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,806,031
Number of extensions: 82829
Number of successful extensions: 168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 4
Length of query: 483
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 394
Effective length of database: 1,185,626
Effective search space: 467136644
Effective search space used: 467136644
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.4 bits)