BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy9298
         (167 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6L6Q6|LYS_CRAGI Lysozyme OS=Crassostrea gigas GN=lysoz PE=2 SV=1
          Length = 137

 Score = 41.6 bits (96), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 52/137 (37%), Gaps = 32/137 (23%)

Query: 25  VDQICLGCICHGMSLCNQTIGCNGD----TCGAFKITWAYWSDAGKPTIHFHIINFLSRV 80
           +   CL CIC+  S C + IGC+ D    +CG F+I   YW D GKP   F         
Sbjct: 22  ISSACLRCICNVESGC-RPIGCHYDVYSYSCGYFQIKENYWEDCGKPGTSF--------- 71

Query: 81  LGPYRYCIPNFIALGQTVLEIFCIPPFQNFPFKPVVHTYDCDADGQIDCRDYAAIHRLGG 140
               + C  ++      V              K  + +  C A    +C  YA IH  G 
Sbjct: 72  ----KACANDYTCASNCVRAY----------MKRYIGSSGCPA----NCESYARIHNGGP 113

Query: 141 YGCNAPLDATYLARFNK 157
            GC  P    Y  + ++
Sbjct: 114 RGCRHPSTLRYWEKVHQ 130


>sp|B3A003|LYS3_CRAVI Lysozyme 3 OS=Crassostrea virginica GN=lysoz3 PE=1 SV=1
          Length = 187

 Score = 41.6 bits (96), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 29/51 (56%), Gaps = 5/51 (9%)

Query: 21  STQPVDQICLGCICHGMSLCNQTIGC----NGDTCGAFKITWAYWSDAGKP 67
           ST  V Q CL CIC+  S C + IGC    N D+CG F+I   YW D G P
Sbjct: 67  STGIVSQQCLQCICNVESGC-KAIGCHFDVNSDSCGYFQIKEGYWHDCGSP 116


>sp|P83673|LYS1_CRAVI Lysozyme 1 OS=Crassostrea virginica GN=lysoz1 PE=1 SV=3
          Length = 184

 Score = 40.4 bits (93), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 29/50 (58%), Gaps = 5/50 (10%)

Query: 22  TQPVDQICLGCICHGMSLCNQTIGC----NGDTCGAFKITWAYWSDAGKP 67
           T  V Q CL CIC+  S C + IGC    N D+CG F+I  AYW D G P
Sbjct: 69  TGMVSQQCLRCICNVESGC-RPIGCHWDVNSDSCGYFQIKRAYWIDCGSP 117


>sp|Q6L6Q5|LYS_OSTED Lysozyme OS=Ostrea edulis GN=lysoz PE=2 SV=1
          Length = 137

 Score = 40.0 bits (92), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 31/134 (23%)

Query: 22  TQPVDQICLGCICHGMSLCNQTIGCNGD----TCGAFKITWAYWSDAGKPTIHFHIINFL 77
           T  +   CL CIC   S     IGC  D    +CG F+I  +YW D G            
Sbjct: 18  TDAISDACLTCICKQESYGCTQIGCRMDGRSLSCGYFQIKKSYWIDCG------------ 65

Query: 78  SRVLGPYRYCIPNFIALGQTVLEIFCIPPFQNFPFKPVVHTYDCDADGQIDCRDYAAIHR 137
            R+   +  C  ++         + C+  +     K  +    C A    +C++YA +H 
Sbjct: 66  -RLGSSWEACADDY------NCAVRCVRAY----MKKYIGKSGCTA----NCKNYARLHN 110

Query: 138 LGGYGCNAPLDATY 151
            G  GC  P   TY
Sbjct: 111 GGPKGCTKPSTLTY 124


>sp|P86383|LYS_MERLU Lysozyme OS=Meretrix lusoria PE=1 SV=1
          Length = 122

 Score = 38.1 bits (87), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 5/52 (9%)

Query: 25 VDQICLGCICHGMSLCNQTIGCNGD----TCGAFKITWAYWSDAGKPTIHFH 72
          V Q CL CIC   S C + +GC  D    +CG F+I  AYW D G+P   + 
Sbjct: 6  VSQRCLSCICKMESGC-RNVGCKMDMGSLSCGYFQIKEAYWIDCGRPGSSWK 56


>sp|Q1XG90|LYS2_CRAVI Lysozyme 2 OS=Crassostrea virginica GN=lysoz2 PE=1 SV=1
          Length = 135

 Score = 37.4 bits (85), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 6/56 (10%)

Query: 16 SASAQSTQPVDQICLGCICHGMSLCNQTIGCNGD----TCGAFKITWAYWSDAGKP 67
          SAS   +   DQ CL CIC   S C + IGC+ D    +CG F+I   YW+D G P
Sbjct: 12 SASVVYSSISDQ-CLRCICEVESGC-RAIGCHWDVYSNSCGYFQIKQGYWTDCGSP 65


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.330    0.145    0.508 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,462,856
Number of Sequences: 539616
Number of extensions: 2779322
Number of successful extensions: 5571
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 5560
Number of HSP's gapped (non-prelim): 11
length of query: 167
length of database: 191,569,459
effective HSP length: 109
effective length of query: 58
effective length of database: 132,751,315
effective search space: 7699576270
effective search space used: 7699576270
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (26.6 bits)