Query psy9298
Match_columns 167
No_of_seqs 104 out of 128
Neff 3.9
Searched_HMMs 13730
Date Fri Aug 16 23:51:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9298.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9298hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qqya_ d.2.1.2 (A:) Lysozyme 74.6 0.52 3.8E-05 34.3 1.4 67 30-98 29-100 (130)
2 d1yroa1 d.2.1.2 (A:1-123) alph 51.1 0.92 6.7E-05 32.7 -1.2 37 30-66 26-65 (123)
3 d1b9oa_ d.2.1.2 (A:) alpha-Lac 46.6 1.8 0.00013 31.2 -0.2 37 30-66 26-65 (123)
4 d1hfxa_ d.2.1.2 (A:) alpha-Lac 35.0 2.3 0.00017 30.4 -1.2 37 30-66 26-65 (123)
5 d1gd6a_ d.2.1.2 (A:) Lysozyme 30.7 5 0.00037 28.4 0.1 65 30-98 25-94 (119)
6 d2nwdx1 d.2.1.2 (X:1-130) Lyso 28.6 5.5 0.0004 28.5 -0.0 38 30-67 28-70 (130)
7 d1lmqa_ d.2.1.2 (A:) Lysozyme 26.7 6 0.00044 28.5 -0.1 65 30-98 28-99 (129)
8 d2vb1a1 d.2.1.2 (A:1-129) Lyso 26.1 6.7 0.00049 28.2 0.0 66 29-98 27-99 (129)
9 d1mcvi_ g.3.2.1 (I:) Trypsin i 18.3 15 0.0011 20.0 0.4 16 83-98 5-20 (28)
10 d1juga_ d.2.1.2 (A:) Lysozyme 16.3 14 0.001 26.3 0.0 37 30-66 28-68 (125)
No 1
>d1qqya_ d.2.1.2 (A:) Lysozyme {Dog (Canis familiaris), milk [TaxId: 9615]}
Probab=74.56 E-value=0.52 Score=34.32 Aligned_cols=67 Identities=10% Similarity=0.043 Sum_probs=40.2
Q ss_pred HHhHhhhhcCCCCCCCC-----CCCcccceeeCHHHHhhcCCCCcccccccccccCCCccccccCchhhHHHhh
Q psy9298 30 LGCICHGMSLCNQTIGC-----NGDTCGAFKITWAYWSDAGKPTIHFHIINFLSRVLGPYRYCIPNFIALGQTV 98 (167)
Q Consensus 30 L~CIC~a~SgCn~~~~C-----~~~~CG~F~It~~YW~DAGkp~~~~~~~~d~~~~~~a~~~Ca~d~~CA~~tV 98 (167)
.-||-+.||+.|..+.= .+..=|.|||+-.||=..+++...+ += .-+=++---.+=.+|-.||.+++
T Consensus 29 wvCla~~ES~~nT~a~~~~~~dgs~~yGiFQIn~~~WC~~~~~~~~n-~C-~i~C~~Ll~ddI~ddi~CAkkI~ 100 (130)
T d1qqya_ 29 WVCMAEYESNFNTQAFNGRNSNGSSDYGIFQLNSKWWCKSNSHSSAN-AC-NIMCSKFLDDNIDDDIACAKRVV 100 (130)
T ss_dssp HHHHHHHHHTTBTTCEESSCSSSCCEETTTTEETTTTCBBTTBCCCC-TT-CSBGGGGGSSCCHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCcccccCCCCCCCcccceeeecchhhhcCCCCCCCC-cc-CCchHHHhCcccHHHHHHHHHHH
Confidence 56999999999876421 1234999999999998877653211 00 00000001112345668888888
No 2
>d1yroa1 d.2.1.2 (A:1-123) alpha-Lactalbumin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=51.06 E-value=0.92 Score=32.71 Aligned_cols=37 Identities=16% Similarity=0.369 Sum_probs=28.9
Q ss_pred HHhHhhhhcCCCCCCC---CCCCcccceeeCHHHHhhcCC
Q psy9298 30 LGCICHGMSLCNQTIG---CNGDTCGAFKITWAYWSDAGK 66 (167)
Q Consensus 30 L~CIC~a~SgCn~~~~---C~~~~CG~F~It~~YW~DAGk 66 (167)
.-||-+.||+.|..+. =.+..=|+|||+-.||=.-++
T Consensus 26 wvCla~~ES~~nt~a~~~~~gs~dyGlFQIn~~~WC~~~~ 65 (123)
T d1yroa1 26 WACVLFHTSGYDTQAVVNDNGSTEYGLFQISDRFWCKSSE 65 (123)
T ss_dssp HHHHHHHHHTTBTTCEEEETTEEEETTTTEETTTTSBCSS
T ss_pred HHHHHHHHhCCCCcCeeCCCCCccccceeecccccCCCCC
Confidence 4699999999987652 112369999999999997765
No 3
>d1b9oa_ d.2.1.2 (A:) alpha-Lactalbumin {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.64 E-value=1.8 Score=31.23 Aligned_cols=37 Identities=19% Similarity=0.336 Sum_probs=29.0
Q ss_pred HHhHhhhhcCCCCCC---CCCCCcccceeeCHHHHhhcCC
Q psy9298 30 LGCICHGMSLCNQTI---GCNGDTCGAFKITWAYWSDAGK 66 (167)
Q Consensus 30 L~CIC~a~SgCn~~~---~C~~~~CG~F~It~~YW~DAGk 66 (167)
.-||-+.||+.|..+ .=.+..=|+|||+-.||=.-++
T Consensus 26 WvCla~~ES~~nT~a~~~~dgS~dYGiFQIn~~~WC~~~~ 65 (123)
T d1b9oa_ 26 LICTMFHTSGYDTQAIVENDESTEYGLFQISNKLWCKSSQ 65 (123)
T ss_dssp HHHHHHHHHTTBTTCEEECSSCEEETTTTEETTTTSBCTT
T ss_pred HHHHHHHHhcCCccceeCCCCCcccceEeeccccccCCCC
Confidence 469999999998765 2112358999999999998766
No 4
>d1hfxa_ d.2.1.2 (A:) alpha-Lactalbumin {Guinea pig (Cavia porcellus) [TaxId: 10141]}
Probab=35.01 E-value=2.3 Score=30.39 Aligned_cols=37 Identities=16% Similarity=0.211 Sum_probs=28.7
Q ss_pred HHhHhhhhcCCCCCCCC---CCCcccceeeCHHHHhhcCC
Q psy9298 30 LGCICHGMSLCNQTIGC---NGDTCGAFKITWAYWSDAGK 66 (167)
Q Consensus 30 L~CIC~a~SgCn~~~~C---~~~~CG~F~It~~YW~DAGk 66 (167)
.-||-+.||+.|..+.= .+..=|.|||+-.||=+-++
T Consensus 26 wvCia~~ES~~nt~a~~~~~~s~~yGlFQIN~~~WC~~~~ 65 (123)
T d1hfxa_ 26 WLCIIFHISGYDTQAIVKNSDHKEYGLFQINDKDFCESST 65 (123)
T ss_dssp HHHHHHHHHTTBTTCEEEETTEEEETTTTEETTTTCBCSS
T ss_pred HHHHHHHHhCCCCcCccCCCCCccccccccccccccCCCC
Confidence 45899999999876520 12368999999999998765
No 5
>d1gd6a_ d.2.1.2 (A:) Lysozyme {Silkworm (Bombyx mori) [TaxId: 7091]}
Probab=30.70 E-value=5 Score=28.39 Aligned_cols=65 Identities=14% Similarity=0.200 Sum_probs=39.0
Q ss_pred HHhHhhhhcCCCCCCC----CCCCcccceeeCHHHHhhcCC-CCcccccccccccCCCccccccCchhhHHHhh
Q psy9298 30 LGCICHGMSLCNQTIG----CNGDTCGAFKITWAYWSDAGK-PTIHFHIINFLSRVLGPYRYCIPNFIALGQTV 98 (167)
Q Consensus 30 L~CIC~a~SgCn~~~~----C~~~~CG~F~It~~YW~DAGk-p~~~~~~~~d~~~~~~a~~~Ca~d~~CA~~tV 98 (167)
.-||-+.||+-|..+. =.+..=|+|||+-.||=+-|+ |+..=+| .=+...+ .+=.+|-.||.++|
T Consensus 25 WvCia~~ES~~nT~a~~~n~~gs~dyGlFQIn~~~WC~~g~~~~~~C~i-~C~~Ll~---ddI~ddi~CAk~I~ 94 (119)
T d1gd6a_ 25 WVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGASPGKDCNV-KCSDLLT---DDITKAAKCAKKIY 94 (119)
T ss_dssp HHHHHHHHTTTBTTCEEECTTSCEEETTTTEETTTTCBSSSSCBTTTTB-BGGGGSS---SCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCccccccCCCCCcccceeeecccccccCCCCCCCCCCC-CHHHHcC---CChHHHHHHHHHHH
Confidence 5599999999886541 112247999999999986554 2211111 0011111 23445678988888
No 6
>d2nwdx1 d.2.1.2 (X:1-130) Lysozyme {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.59 E-value=5.5 Score=28.52 Aligned_cols=38 Identities=26% Similarity=0.447 Sum_probs=28.7
Q ss_pred HHhHhhhhcCCCCCCCC---CCC--cccceeeCHHHHhhcCCC
Q psy9298 30 LGCICHGMSLCNQTIGC---NGD--TCGAFKITWAYWSDAGKP 67 (167)
Q Consensus 30 L~CIC~a~SgCn~~~~C---~~~--~CG~F~It~~YW~DAGkp 67 (167)
+-||-+.||+.|..+.= ..+ .=|+|||+-.||-.-++.
T Consensus 28 wvCia~~ES~~nt~a~n~~~~dgs~~YGlFQIn~~~WC~~~~~ 70 (130)
T d2nwdx1 28 WMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKT 70 (130)
T ss_dssp HHHHHHHHHSSBTTCEEEETTTTEEEETTTTEETTTTSBCSCS
T ss_pred hhhhhhHhhCCCCcCccCCCCCCccccceeeecccccccCCCC
Confidence 56999999999876421 122 379999999999987663
No 7
>d1lmqa_ d.2.1.2 (A:) Lysozyme {Rainbow trout (Oncorhynchus mykiss) [TaxId: 8022]}
Probab=26.69 E-value=6 Score=28.46 Aligned_cols=65 Identities=20% Similarity=0.248 Sum_probs=40.0
Q ss_pred HHhHhhhhcCCCCCCC----CCCCcccceeeCHHHHhhcCC-CCccc--ccccccccCCCccccccCchhhHHHhh
Q psy9298 30 LGCICHGMSLCNQTIG----CNGDTCGAFKITWAYWSDAGK-PTIHF--HIINFLSRVLGPYRYCIPNFIALGQTV 98 (167)
Q Consensus 30 L~CIC~a~SgCn~~~~----C~~~~CG~F~It~~YW~DAGk-p~~~~--~~~~d~~~~~~a~~~Ca~d~~CA~~tV 98 (167)
.-||-+.||+-|..+. =.+..=|+|||+-.||=+-++ |+... +|. =+...++ +=.+|-.||.++|
T Consensus 28 WvCla~~ES~~nT~a~~~n~~gS~dyGiFQIn~~~WC~~~~~~~~~N~C~i~-C~~Ll~d---dI~ddi~CAkkIv 99 (129)
T d1lmqa_ 28 WVCLSKWESSYNTQATNRNTDGSTDYGIFQINSRYWCDDGRTPGAKNVCGIR-CSQLLTD---DLTVAIRCAKRVV 99 (129)
T ss_dssp HHHHHHHHHTTBTTCEEECTTSCEEETTTTEETTTSCBCSCCTTCCCTTCSB-GGGGSSS---SCHHHHHHHHHHT
T ss_pred HHHHHHHhccCcccccccCCCCCCCcceeeecchhcccCCCCCCCCCCCCCc-HHHHcCC---CcHHHHHHHHHHH
Confidence 5699999999886532 113368999999999987665 43111 010 0111111 3455788998888
No 8
>d2vb1a1 d.2.1.2 (A:1-129) Lysozyme {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=26.10 E-value=6.7 Score=28.20 Aligned_cols=66 Identities=15% Similarity=0.166 Sum_probs=40.6
Q ss_pred HHHhHhhhhcCCCCCCC----CCCCcccceeeCHHHHhhcCC-CCccc--ccccccccCCCccccccCchhhHHHhh
Q psy9298 29 CLGCICHGMSLCNQTIG----CNGDTCGAFKITWAYWSDAGK-PTIHF--HIINFLSRVLGPYRYCIPNFIALGQTV 98 (167)
Q Consensus 29 CL~CIC~a~SgCn~~~~----C~~~~CG~F~It~~YW~DAGk-p~~~~--~~~~d~~~~~~a~~~Ca~d~~CA~~tV 98 (167)
=.-||-+.||+-|..+. =.+..=|+|||+-.||=+-|+ |+... +|. =+...+ .+=.+|-.||.++|
T Consensus 27 ~WvCla~~ES~~nT~a~~~n~~gs~dyGiFQIn~~~WC~~~~~~~~~N~C~i~-C~~Ll~---ddI~ddi~CAkkI~ 99 (129)
T d2vb1a1 27 NWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIP-CSALLS---SDITASVNCAKKIV 99 (129)
T ss_dssp HHHHHHHHHHTTBTTCEEECTTSCEEETTTTEETTTTCBCSSCTTCCCTTCSB-GGGGGC---SSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCcCcccccCCCCCCccceeeecccccccCCCCCCCCCcCCCC-HHHHcC---CCcHHHHHHHHHHH
Confidence 35699999999876542 113469999999999987765 33111 000 000111 13355778998888
No 9
>d1mcvi_ g.3.2.1 (I:) Trypsin inhibitor {Jumping cucumber (Ecballium elaterium) [TaxId: 3679]}
Probab=18.26 E-value=15 Score=20.00 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=14.3
Q ss_pred ccccccCchhhHHHhh
Q psy9298 83 PYRYCIPNFIALGQTV 98 (167)
Q Consensus 83 a~~~Ca~d~~CA~~tV 98 (167)
.|.+|..|..|.+.+|
T Consensus 5 eym~c~~dsdclagcv 20 (28)
T d1mcvi_ 5 EYMRCKQDSDCLAGCV 20 (28)
T ss_dssp CCCBCSSGGGSCTTCC
T ss_pred hhhhccccccccccce
Confidence 5889999999999998
No 10
>d1juga_ d.2.1.2 (A:) Lysozyme {Australian echidna (Tachyglossus aculeatus) [TaxId: 9261]}
Probab=16.35 E-value=14 Score=26.27 Aligned_cols=37 Identities=27% Similarity=0.447 Sum_probs=27.9
Q ss_pred HHhHhhhhcCCCCCCC-CC---CCcccceeeCHHHHhhcCC
Q psy9298 30 LGCICHGMSLCNQTIG-CN---GDTCGAFKITWAYWSDAGK 66 (167)
Q Consensus 30 L~CIC~a~SgCn~~~~-C~---~~~CG~F~It~~YW~DAGk 66 (167)
.-||-+.||+-|..+. =+ +..=|+|||+-.||=.-|+
T Consensus 28 WvCla~~ES~~nT~a~n~n~~GS~dyGiFQIns~~WC~~~~ 68 (125)
T d1juga_ 28 WVCTAFHESSYNTRATNHNTDGSTDYGILQINSRYWCHDGK 68 (125)
T ss_dssp HHHHHHHHHTTBTTCEEECTTSCEEETTTTEETTTTCBCSS
T ss_pred HHHhhhhhcCCCCcceecCCCCCcccCeEEecchhhccCCC
Confidence 4589999999876542 11 2359999999999987665
Done!