RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy9298
         (167 letters)



>gnl|CDD|218609 pfam05497, Destabilase, Destabilase.  Destabilase is an
           endo-epsilon(gamma-Glu)-Lys isopeptidase, which cleaves
           isopeptide bonds formed by transglutaminase (Factor
           XIIIa) between glutamine gamma-carboxamide and the
           epsilon-amino group of lysine.
          Length = 116

 Score = 80.5 bits (199), Expect = 3e-20
 Identities = 51/139 (36%), Positives = 58/139 (41%), Gaps = 28/139 (20%)

Query: 25  VDQICLGCICHGMSLCNQTIGCNGDT----CGAFKITWAYWSDAGKPTIHFHIINFLSRV 80
           V   CL CIC   S C   IGC  D     CG F+I WAYW DAGKP             
Sbjct: 1   VSDDCLRCICEAESGCA-PIGCRMDVGSLSCGYFRIKWAYWIDAGKPG---------DSP 50

Query: 81  LGPYRYCIPNFIALGQTVLEIFCIPPFQNFPFKPVVHTYDCDADGQIDCRDYAAIHRLGG 140
            G Y  C  +       V         QN+  +   +  DC+ DG  DC DYA IH  G 
Sbjct: 51  EGAYENCANDPDCAATCV---------QNYMKR---YGTDCNGDG--DCEDYARIHNGGP 96

Query: 141 YGCNAPLDATYLARFNKCL 159
            GC  PL   Y  R  +CL
Sbjct: 97  NGCKNPLTLGYWRRVQRCL 115


>gnl|CDD|215240 PLN02439, PLN02439, arginine decarboxylase.
          Length = 559

 Score = 29.3 bits (66), Expect = 1.0
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 8/46 (17%)

Query: 87  CIPNFIALGQTVLEIFCIPPFQNFPFKPVVHT----YDCDADGQID 128
            IP+F A+GQ    +F I P      +P V        CD+DG+ID
Sbjct: 396 SIPDFWAIGQ----LFPIVPLHRLDERPTVRGILSDLTCDSDGKID 437


>gnl|CDD|227578 COG5253, MSS4, Phosphatidylinositol-4-phosphate 5-kinase [Signal
           transduction mechanisms].
          Length = 612

 Score = 28.4 bits (63), Expect = 2.0
 Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 71  FHIINFLSRVLGPYRYCIPNFIALGQTVLEIFCIPPFQN-FPFKPVVHTYD 120
           F+ +  L ++ G YR    + I+  ++    F +   +N F    +   +D
Sbjct: 414 FNPLTLLCKIFGFYRVKSRSSISSSKSRKIYFIV--MENLFYPHGIHRIFD 462


>gnl|CDD|181362 PRK08296, PRK08296, hypothetical protein; Provisional.
          Length = 603

 Score = 27.3 bits (61), Expect = 4.9
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 92  IALGQTVLEIFCIPPFQNFPFKPVVHTY 119
           +ALGQ    IF IPP     F+ V++ Y
Sbjct: 67  LALGQYNARIFSIPPANGIDFR-VLNGY 93


>gnl|CDD|233337 TIGR01273, speA, arginine decarboxylase, biosynthetic.  Two
           alternative pathways can convert arginine to putrescine.
           One is decarboxylation by this enzyme followed by
           removal of the urea moeity by agmatinase. In the other,
           the ureohydrolase (arginase) acts first, followed by
           ornithine decarboxylase. This pathway leads to
           spermidine biosynthesis, hence the gene symbol speA. A
           distinct biodegradative form is also pyridoxal
           phosphate-dependent but is not similar in sequence
           [Central intermediary metabolism, Polyamine
           biosynthesis].
          Length = 624

 Score = 26.9 bits (60), Expect = 7.1
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 15/64 (23%)

Query: 88  IPNFIALGQTVLEIFCIPPFQNFPFKP----VVHTYDCDADGQIDCRDYAAIHRLGGYGC 143
           +P+   + Q    +F I P +    KP    V+    CD+DG+ID         +GG G 
Sbjct: 463 LPDAWGIDQ----LFPIMPLERLDEKPTRRAVLLDITCDSDGKID-------QFIGGQGI 511

Query: 144 NAPL 147
            + L
Sbjct: 512 TSTL 515


>gnl|CDD|236500 PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed.
          Length = 891

 Score = 26.6 bits (60), Expect = 8.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 146 PLDATYLARFNKCLND 161
           P+ A Y ARF K L +
Sbjct: 201 PIMAIYQARFLKYLEN 216


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.330    0.145    0.508 

Gapped
Lambda     K      H
   0.267   0.0858    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,529,721
Number of extensions: 744566
Number of successful extensions: 732
Number of sequences better than 10.0: 1
Number of HSP's gapped: 730
Number of HSP's successfully gapped: 10
Length of query: 167
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 77
Effective length of database: 6,945,742
Effective search space: 534822134
Effective search space used: 534822134
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (24.7 bits)