RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9298
         (167 letters)



>d1snla_ a.39.1.7 (A:) Nucleobindin 1 (CALNUC) {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 99

 Score = 25.8 bits (56), Expect = 1.4
 Identities = 7/58 (12%), Positives = 20/58 (34%), Gaps = 1/58 (1%)

Query: 108 QNFPFKPVVHTYDCDADGQIDCRDY-AAIHRLGGYGCNAPLDATYLARFNKCLNDVAQ 164
             F  K     +D ++DG +D ++  A   +      +   +   +    +    + +
Sbjct: 14  NRFNPKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMRE 71


>d1egza_ c.1.8.3 (A:) Endoglucanase Cel5a {Erwinia chrysanthemi
           [TaxId: 556]}
          Length = 291

 Score = 25.9 bits (56), Expect = 2.3
 Identities = 4/32 (12%), Positives = 12/32 (37%)

Query: 35  HGMSLCNQTIGCNGDTCGAFKITWAYWSDAGK 66
           + +S  N  +    +    +       +++GK
Sbjct: 247 NNISNANWALNDKNEGASTYYPDSKNLTESGK 278


>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 364

 Score = 25.8 bits (56), Expect = 2.8
 Identities = 19/133 (14%), Positives = 35/133 (26%), Gaps = 23/133 (17%)

Query: 7   YYYHNYYYFSASAQSTQPVDQICLGCICHGMSLCNQTIGCNGDTCGAFKITWAYWSDAGK 66
           + Y                D   LGC+   + L   +      T    +I     + A +
Sbjct: 169 HGYMAPEVLQKGVAYDSSADWFSLGCMLFKL-LRGHSPFRQHKTKDKHEIDRMTLTMAVE 227

Query: 67  --PTIHFHIINFLSRVLGP---YRYCIPNFIALGQTVLEIFCIPPFQNF----------- 110
              +    + + L  +L      R        LG+   E+   P F++            
Sbjct: 228 LPDSFSPELRSLLEGLLQRDVNRRLGC-----LGRGAQEVKESPFFRSLDWQMVFLQKYP 282

Query: 111 -PFKPVVHTYDCD 122
            P  P     +  
Sbjct: 283 PPLIPPRGEVNAA 295


>g1tme.1 b.121.4.1 (4:,2:) Theilovirus capsid proteins {Theiler's
          murine encephalomyelitis virus, strain da [TaxId:
          12124]}
          Length = 280

 Score = 25.1 bits (55), Expect = 5.1
 Identities = 6/26 (23%), Positives = 9/26 (34%)

Query: 6  YYYYHNYYYFSASAQSTQPVDQICLG 31
            +Y N Y  S    ++  V     G
Sbjct: 9  NNFYSNQYQNSIDLSASDRVASDKAG 34


>d1auib_ a.39.1.5 (B:) Calcineurin regulatory subunit (B-chain)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 165

 Score = 24.7 bits (52), Expect = 6.5
 Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 3/93 (3%)

Query: 46  CNGDTCGAFKITWAYWSDAGKPTIHFHIINFLSRVLGPYRYCIPNFIALGQTVLEIFCIP 105
            +G+    FK      S           + F  R+    +    +   L Q +  +    
Sbjct: 59  TDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNN 118

Query: 106 PFQNFPFKPV---VHTYDCDADGQIDCRDYAAI 135
                  + V   +   D D DG+I   ++ A+
Sbjct: 119 LKDTQLQQIVDKTIINADKDGDGRISFEEFCAV 151


>g1d4m.1 b.121.4.1 (4:,2:) Human enterovirus B coat proteins
          {Human coxsackievirus A9 [TaxId: 12067]}
          Length = 320

 Score = 24.4 bits (53), Expect = 7.1
 Identities = 6/16 (37%), Positives = 8/16 (50%)

Query: 7  YYYHNYYYFSASAQST 22
          Y   NYY  +AS  + 
Sbjct: 26 YTNINYYKDAASNSAN 41


>d2sasa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein
           {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}
          Length = 185

 Score = 24.2 bits (51), Expect = 8.2
 Identities = 8/46 (17%), Positives = 12/46 (26%)

Query: 119 YDCDADGQIDCRDYAAIHRLGGYGCNAPLDATYLARFNKCLNDVAQ 164
            D + DG I   D+  +           L           L D  +
Sbjct: 18  LDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWR 63


>d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS),
           second 'additional' domain {Escherichia coli [TaxId:
           562]}
          Length = 162

 Score = 24.0 bits (51), Expect = 9.8
 Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 3/60 (5%)

Query: 5   FYYYYHNYYYFSASAQSTQPVDQICLGCICHGMSLCNQTIGCNGDTCGAFKIT---WAYW 61
            +      Y  S   ++    D+  L      + +C      N   C  FK+     AYW
Sbjct: 85  TFANRGESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHVPNMRFCHHFKLMKTAGAYW 144


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.145    0.508 

Gapped
Lambda     K      H
   0.267   0.0612    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 726,121
Number of extensions: 35002
Number of successful extensions: 241
Number of sequences better than 10.0: 1
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 26
Length of query: 167
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 88
Effective length of database: 1,322,926
Effective search space: 116417488
Effective search space used: 116417488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 49 (22.9 bits)