BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy93
(503 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|242020088|ref|XP_002430488.1| Hrp65 protein, putative [Pediculus humanus corporis]
gi|212515645|gb|EEB17750.1| Hrp65 protein, putative [Pediculus humanus corporis]
Length = 522
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 213/368 (57%), Positives = 266/368 (72%), Gaps = 39/368 (10%)
Query: 81 DRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGET 140
D ++I I GPT++LPP + + K KF+ CRLY+GN+ D+TE +I +LF PYGET
Sbjct: 127 DDRLIDRIATISGPTIELPPVDAKEK--KFSGRCRLYIGNLANDVTEEEIKQLFAPYGET 184
Query: 141 QELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVT 200
E+FIN EKMF F+R+DY+ NA+KAK +LDG + KGR LK+RFAP +AAIKVKNL VT
Sbjct: 185 SEIFINSEKMFAFVRVDYRSNAEKAKRELDGFMRKGRPLKVRFAPHSAAIKVKNLNQWVT 244
Query: 201 NELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLR 260
NELLE AF VFG+IERA+VI DERG S EGIVEFARKP A QALRRC EGC+F+T SLR
Sbjct: 245 NELLEWAFQVFGEIERAVVIGDERGKSTGEGIVEFARKPGATQALRRCTEGCYFITSSLR 304
Query: 261 PVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHEL-- 318
PVIVEPL+ D+IDG SE+++ KK PEF+K+R+VGPRFA SFEFEYG+RWKQLHEL
Sbjct: 305 PVIVEPLDQVDDIDGYSEKSLFKKGPEFFKEREVGPRFANHGSFEFEYGTRWKQLHELYK 364
Query: 319 -------------------------YEHETEMLRKELAQREIDRERQKAEWEMKERQAEE 353
YEHETE+LR++L RE D+ERQK EWE+KERQAEE
Sbjct: 365 QKEEALRREMKMEEEKLEAQMEYAKYEHETELLREQLRLREQDKERQKREWELKERQAEE 424
Query: 354 LKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMF---------LVEQQQGRG-GSGG 403
+R DEE+M++ AEEMQLR+ +QEE+LRRRQ +N++F L +Q+Q G G GG
Sbjct: 425 QRRSDEEMMRRQAEEMQLRIHRQEEELRRRQQENTLFMQAHQLNSLLDQQEQALGSGPGG 484
Query: 404 YGSPGQAY 411
Y S G+ +
Sbjct: 485 YDSAGRGH 492
>gi|193605913|ref|XP_001947323.1| PREDICTED: hrp65 protein-like [Acyrthosiphon pisum]
Length = 547
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 214/422 (50%), Positives = 274/422 (64%), Gaps = 36/422 (8%)
Query: 80 GDRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGE 139
D + E++M I GPT +LP ++ + KF + CRLY+GN+ D TE ++IE+FKPYGE
Sbjct: 128 ADALWNERLMQIMGPTHELPQTDTTER--KFLSQCRLYIGNLV-DCTEEELIEMFKPYGE 184
Query: 140 TQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCV 199
E F+NKEKMF FIR+DY+ NA+KAK +LDG KGR LKIRFAPI AAIKVKNLT V
Sbjct: 185 VSENFLNKEKMFAFIRLDYRTNAEKAKRELDGQTRKGRMLKIRFAPIAAAIKVKNLTPFV 244
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSL 259
+NELLE AF +FGDIER V+VDERGNS EGI+EF+RK AA+ AL+RC+EGCFFLT SL
Sbjct: 245 SNELLEYAFSIFGDIERCQVMVDERGNSTGEGIIEFSRKNAASNALKRCSEGCFFLTSSL 304
Query: 260 RPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHEL- 318
RP +VE E D DGL ++ + KKT +F KQR VGPRFA NSFE E+G+RWKQL EL
Sbjct: 305 RPCVVETYEFVDSSDGLPDKLLPKKTMDFQKQRDVGPRFANPNSFEHEFGTRWKQLAELY 364
Query: 319 --------------------------YEHETEMLRKELAQREIDRERQKAEWEMKERQAE 352
YEHETEMLR++L QRE+DRERQK EWEMKERQAE
Sbjct: 365 KSKEDALKREMKLEEEKLEAQMEYARYEHETEMLREQLRQREMDRERQKMEWEMKERQAE 424
Query: 353 ELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQQGRGGSGGYGSPGQAYG 412
+ + R+ ++ ++ +E++ +R+ Q+E++RRRQ DNS F+ + + G G G P G
Sbjct: 425 DQRLREGDIFRRQSEDLSMRMHHQDEEMRRRQQDNSSFMQDHRGGPGKPQFDGPPIPVEG 484
Query: 413 NAIIDFEALAAAVGNAVVGNVTGV--DNKGSAMD---FDQGGRSGGGGGRRNDSASSGWS 467
++ + EA+ A G V DN+G FD G R G GGR +G
Sbjct: 485 MSVRELEAITAQGGMESTPFVETFVRDNQGVLPPPGLFDAGPR-GDRGGRWGQDRRNGQD 543
Query: 468 RR 469
RR
Sbjct: 544 RR 545
>gi|91094279|ref|XP_970760.1| PREDICTED: similar to splicing factor proline- and glutamine-rich
[Tribolium castaneum]
gi|270014396|gb|EFA10844.1| hypothetical protein TcasGA2_TC001621 [Tribolium castaneum]
Length = 495
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 208/387 (53%), Positives = 258/387 (66%), Gaps = 34/387 (8%)
Query: 58 RGNR-PDGRGSDMNESRMGGGGGGDRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRL 116
R NR P G + N + G G D+ EK+ + GPT DLPP + K KF+ RL
Sbjct: 88 RPNRGPGGPHGNQNFNEHGPPGRIDK-INEKLANMNGPTFDLPPLDHSEK--KFSGRTRL 144
Query: 117 YLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKG 176
Y+GNIG D+TE+D+ ELF+PYGET E F+NKEK F FIR+DY+ NA+KAK +LDG + KG
Sbjct: 145 YVGNIGNDVTEDDLTELFRPYGETSEHFVNKEKNFAFIRVDYRANAEKAKRELDGILFKG 204
Query: 177 RSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFA 236
++LKIRFAP + +KVKNLT V+NELL +F VFG++ERA VIVDERG EGIVEFA
Sbjct: 205 KNLKIRFAPNGSTVKVKNLTPFVSNELLYYSFSVFGEVERAYVIVDERGKPVGEGIVEFA 264
Query: 237 RKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGP 296
RK A A+RRC+EGCFFLT SLRPVIVE E D+ DG E+ +NKK PEF K R+VGP
Sbjct: 265 RKGCALNAVRRCSEGCFFLTTSLRPVIVESYEPMDDSDGYPEKYLNKKNPEFSKSREVGP 324
Query: 297 RFATVNSFEFEYGSRWKQLHEL---------------------------YEHETEMLRKE 329
RFA+VNSFE+EYG RWKQLHEL YEHETEMLR +
Sbjct: 325 RFASVNSFEYEYGMRWKQLHELFAQKEEAMKKEYEMEKEKLEAQMEFARYEHETEMLRDQ 384
Query: 330 LAQREIDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSM 389
L RE+DR+RQK EWEMKER AEE ++R+EE M++ EEMQ R+ QEE++RRRQ +N++
Sbjct: 385 LRAREMDRDRQKHEWEMKERLAEEQRQRNEEQMRRQQEEMQNRMMHQEEEMRRRQQENNL 444
Query: 390 FLVEQQQG---RGGSGGYGSPGQAYGN 413
F+ Q + Y P Y N
Sbjct: 445 FMQAHQLDNMLQQEEQAYEEPSGMYNN 471
>gi|383861809|ref|XP_003706377.1| PREDICTED: hrp65 protein-like [Megachile rotundata]
Length = 566
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/346 (55%), Positives = 246/346 (71%), Gaps = 29/346 (8%)
Query: 76 GGGGGDRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFK 135
G D E+IMAI GPT DLPP E K KF+ RLY+GN+ D+TE +I ++F+
Sbjct: 114 GNRSQDDRLMERIMAISGPTHDLPPQETTEK--KFSGRNRLYIGNLTNDVTEEEIQQMFQ 171
Query: 136 PYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNL 195
YGE ELF+NKEK F F+RMDY+ NA+KAK +LDG + KGR+LK+RFAP ++ IK+KNL
Sbjct: 172 QYGEISELFVNKEKNFAFLRMDYRVNAEKAKHELDGTMRKGRALKVRFAPHSSTIKIKNL 231
Query: 196 TSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFL 255
T ++NELLE AF VFG+IERAIVIVD+RG S EGIVEF RKP+A ALR+C EGC+FL
Sbjct: 232 TPWISNELLERAFSVFGEIERAIVIVDDRGKSTGEGIVEFCRKPSAQLALRKCTEGCYFL 291
Query: 256 TQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQL 315
T SLRPV+VEP E D++DG ++ + +K PEF+K R +GPRFA + SFE EYG+RWKQL
Sbjct: 292 TASLRPVVVEPFEQQDDVDGYPDKNLPRKNPEFFKARDIGPRFAQIGSFEHEYGTRWKQL 351
Query: 316 HEL---------------------------YEHETEMLRKELAQREIDRERQKAEWEMKE 348
HEL YEHETE+LR++L RE DRERQK EWEMKE
Sbjct: 352 HELYKQKEEALKREMAMEEEKLEAQMEFARYEHETELLREQLRMREADRERQKREWEMKE 411
Query: 349 RQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQ 394
RQAEE + R+EEL ++ EEM +R+ +QEE+L RRQ +N++F+ EQ
Sbjct: 412 RQAEEQRTREEELRRRQQEEMAMRIRRQEEELHRRQQENNLFMQEQ 457
>gi|380023432|ref|XP_003695527.1| PREDICTED: hrp65 protein-like [Apis florea]
Length = 563
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 194/348 (55%), Positives = 247/348 (70%), Gaps = 30/348 (8%)
Query: 74 MGGGGGGDRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIEL 133
MG DR E+IMAI GPT +LP E K KF+ RLY+GN+ D+TE +I ++
Sbjct: 113 MGNRSQDDR-LMERIMAISGPTHELPSQETTEK--KFSGRNRLYIGNLTNDVTEEEIQQM 169
Query: 134 FKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVK 193
F+ YGE ELF+NKEK F F+RMDY+ NA+KAK +LDG + KGR+LK+RFAP ++ IKVK
Sbjct: 170 FQQYGEISELFVNKEKNFAFLRMDYRVNAEKAKHELDGTMRKGRALKVRFAPHSSTIKVK 229
Query: 194 NLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCF 253
NLT ++NELLE AF VFG+IERAIVIVD+RG S EGIVEF RKP+A ALR+C EGC+
Sbjct: 230 NLTPWISNELLERAFSVFGEIERAIVIVDDRGKSTGEGIVEFCRKPSAQLALRKCTEGCY 289
Query: 254 FLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWK 313
FLT SLRPV+VEP E D+IDG ++ + +K PEF+K R +GPRFA + SFE EYG+RWK
Sbjct: 290 FLTASLRPVVVEPFEQQDDIDGYPDKNLPRKNPEFFKARDIGPRFAQIGSFEHEYGTRWK 349
Query: 314 QLHEL---------------------------YEHETEMLRKELAQREIDRERQKAEWEM 346
QLHEL YEHETE+LR++L RE DRERQK EWEM
Sbjct: 350 QLHELYKQKEEALKREMAMEEEKLEAQMEFARYEHETELLREQLRMREADRERQKREWEM 409
Query: 347 KERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQ 394
KERQAEE + R+EEL ++ EEM +R+ +Q+E+L RRQ +N++F+ EQ
Sbjct: 410 KERQAEEQRTREEELRRRQQEEMAMRIRRQDEELHRRQQENNLFMQEQ 457
>gi|321454568|gb|EFX65733.1| hypothetical protein DAPPUDRAFT_204255 [Daphnia pulex]
Length = 472
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 184/336 (54%), Positives = 236/336 (70%), Gaps = 29/336 (8%)
Query: 86 EKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI 145
EK+ + T++LP + KF+ RLY+GN+G DI E D+ E F YGE E+F+
Sbjct: 75 EKLATLSNSTVELPIR--SFTETKFSGRSRLYVGNLGNDIVEQDLKEYFSAYGEIAEVFL 132
Query: 146 NKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLE 205
NKEK F F+R+DY+ N++KAK +LDG VLKGR+L++R AP +AA++VKNL+ VTNELLE
Sbjct: 133 NKEKGFAFVRLDYRSNSEKAKRELDGKVLKGRTLRVRSAPHSAAVRVKNLSPFVTNELLE 192
Query: 206 LAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVE 265
AF +FGDIERAIV+ +ERG S EG+VEF RKP A A+RRC +GCFFLT SLRPV+VE
Sbjct: 193 KAFSIFGDIERAIVVANERGQSTNEGVVEFVRKPGAQAAIRRCTDGCFFLTSSLRPVVVE 252
Query: 266 PLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHEL------- 318
P+E D+ DG SER KKTPEF K+R+ GPRFA NSF+F YG RWKQL EL
Sbjct: 253 PMEQLDDEDGFSERAFTKKTPEFSKEREAGPRFAEPNSFQFTYGQRWKQLLELYKQKMDA 312
Query: 319 --------------------YEHETEMLRKELAQREIDRERQKAEWEMKERQAEELKRRD 358
YEHETE+LR++L QRE DRERQK +WEMKERQ EE + R+
Sbjct: 313 VERELKIEEDKLVSQMEYARYEHETELLREQLRQREQDRERQKRDWEMKERQHEESRLRE 372
Query: 359 EELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQ 394
EE +++ +EMQ RL QQE+++RRRQ +N+MF+ EQ
Sbjct: 373 EETLRRQQDEMQHRLRQQEDEMRRRQQENTMFMQEQ 408
>gi|328792621|ref|XP_001121935.2| PREDICTED: hrp65 protein-like [Apis mellifera]
Length = 563
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 194/348 (55%), Positives = 247/348 (70%), Gaps = 30/348 (8%)
Query: 74 MGGGGGGDRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIEL 133
MG DR E+IMAI GPT +LP E K KF+ RLY+GN+ D+TE +I ++
Sbjct: 113 MGNRSQDDR-LMERIMAISGPTHELPSQETTEK--KFSGRNRLYIGNLTNDVTEEEIQQM 169
Query: 134 FKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVK 193
F+ YGE ELF+NKEK F F+RMDY+ NA+KAK +LDG + KGR+LK+RFAP ++ IKVK
Sbjct: 170 FQQYGEISELFVNKEKNFAFLRMDYRVNAEKAKHELDGTMRKGRALKVRFAPHSSTIKVK 229
Query: 194 NLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCF 253
NLT ++NELLE AF VFG+IERAIVIVD+RG S EGIVEF RKP+A ALR+C EGC+
Sbjct: 230 NLTPWISNELLERAFSVFGEIERAIVIVDDRGKSTGEGIVEFCRKPSAQLALRKCTEGCY 289
Query: 254 FLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWK 313
FLT SLRPV+VEP E D+IDG ++ + +K PEF+K R +GPRFA + SFE EYG+RWK
Sbjct: 290 FLTASLRPVVVEPFEQQDDIDGYPDKNLPRKNPEFFKARDIGPRFAQIGSFEHEYGTRWK 349
Query: 314 QLHEL---------------------------YEHETEMLRKELAQREIDRERQKAEWEM 346
QLHEL YEHETE+LR++L RE DRERQK EWEM
Sbjct: 350 QLHELYKQKEEALKREMAMEEEKLEAQMEFARYEHETELLREQLRMREADRERQKREWEM 409
Query: 347 KERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQ 394
KERQAEE + R+EEL ++ EEM +R+ +Q+E+L RRQ +N++F+ EQ
Sbjct: 410 KERQAEEQRTREEELRRRQQEEMAMRIRRQDEELHRRQQENNLFMQEQ 457
>gi|307200250|gb|EFN80529.1| Hrp65 protein [Harpegnathos saltator]
Length = 589
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 203/409 (49%), Positives = 263/409 (64%), Gaps = 47/409 (11%)
Query: 81 DRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGET 140
D E+IMAI GPT +LPP E K KF+ RLY+GN+ D+TE +I +F+ YGE
Sbjct: 143 DDRLMERIMAISGPTHELPPQEMTEK--KFSGRNRLYIGNLTNDVTEEEIQTMFRKYGEI 200
Query: 141 QELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVT 200
ELF+NKEK F F+RMDY+ NA+KAK +LDG V KGR+LK+RFAP ++ IK+KNLT ++
Sbjct: 201 SELFVNKEKSFAFLRMDYRINAEKAKHELDGTVRKGRALKVRFAPHSSTIKIKNLTPWIS 260
Query: 201 NELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLR 260
NELLE AF VFG++ERAIVIVD+RG S EG+VE+ RKP+A ALR+C EGC+FLT SLR
Sbjct: 261 NELLEKAFSVFGEVERAIVIVDDRGKSTGEGVVEYCRKPSAQLALRKCTEGCYFLTASLR 320
Query: 261 PVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHEL-- 318
PV+VEP E D++DG ++ + +K PEF+K R +GPRFA + SFE EYG+RWKQLHEL
Sbjct: 321 PVVVEPFEQQDDVDGYPDKNLPRKNPEFFKARDIGPRFAQLGSFEHEYGTRWKQLHELYK 380
Query: 319 -------------------------YEHETEMLRKELAQREIDRERQKAEWEMKERQAEE 353
YEHETE+LR++L RE DRERQK EWEMKERQAEE
Sbjct: 381 QKEEALKREMAMEEEKLEAQMEFARYEHETELLREQLRMREADRERQKREWEMKERQAEE 440
Query: 354 LKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQ----------------QQG 397
+ R+EEL ++ EEM +R+ +QEE+L RRQ +N++F+ EQ
Sbjct: 441 QRTREEELRRRQQEEMAIRIRRQEEELHRRQQENNLFMQEQAIRSSGGGLGGGKNYDSVS 500
Query: 398 RGGSGGYGSPGQAYGNAIIDFEALAAAVGNAVVGNVTGV-DNKGSAMDF 445
GYG P G +D ++ A GN G D++G MD
Sbjct: 501 NNDRDGYGQPDGGSG-IPVDPKSFMDAYNTMDRGNRGGYNDDRGQIMDL 548
>gi|350412928|ref|XP_003489819.1| PREDICTED: hrp65 protein-like [Bombus impatiens]
Length = 571
Score = 369 bits (946), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 193/352 (54%), Positives = 249/352 (70%), Gaps = 34/352 (9%)
Query: 74 MGGGGGGDRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIEL 133
MG DR E+IMAI GPT DLPP P+ + KF+ RLY+GN+ D+TE +I ++
Sbjct: 114 MGNRSQDDR-LMERIMAISGPTHDLPP--PETTEKKFSGRNRLYIGNLSNDVTEEEIQQI 170
Query: 134 FKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVL----KGRSLKIRFAPINAA 189
F+ YGE ELF+NKEK F F+RMDY+ NA+KAK +LDG + KGR+LK+RFAP ++
Sbjct: 171 FQQYGEISELFVNKEKNFAFLRMDYRVNAEKAKHELDGKNVFTNSKGRALKVRFAPHSST 230
Query: 190 IKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCA 249
+KVKNLT +TNELLE AF VFG+IERAIVI D++G S EGIVEF RKP+A ALR+C
Sbjct: 231 VKVKNLTPWITNELLERAFSVFGEIERAIVIADDKGKSTGEGIVEFCRKPSAQLALRKCT 290
Query: 250 EGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYG 309
EGC+FLT SLRPV+V+P EL D+IDG S++ + +K EF+ R +GPRFA + SFE+EYG
Sbjct: 291 EGCYFLTASLRPVVVKPFELLDDIDGYSDKNLPRKNQEFFTARDIGPRFAKIGSFEYEYG 350
Query: 310 SRWKQLHEL---------------------------YEHETEMLRKELAQREIDRERQKA 342
+RWKQLHEL YEHETE+LR++L RE DRERQK
Sbjct: 351 TRWKQLHELYEQKEEALKREMAMEEEKLEAQMEFARYEHETELLREQLRMREADRERQKR 410
Query: 343 EWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQ 394
EWEMKERQAEE + R+EEL ++ EEM +R+ +QEE+L RRQ +N++F+ EQ
Sbjct: 411 EWEMKERQAEEQRTREEELRRRQQEEMAMRIRRQEEELHRRQQENNLFMQEQ 462
>gi|390177481|ref|XP_003736389.1| GA27079, isoform B [Drosophila pseudoobscura pseudoobscura]
gi|388859061|gb|EIM52462.1| GA27079, isoform B [Drosophila pseudoobscura pseudoobscura]
Length = 698
Score = 368 bits (944), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 179/342 (52%), Positives = 241/342 (70%), Gaps = 28/342 (8%)
Query: 81 DRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGET 140
D + +++ AI GPTL+LPP E ++ KF+ RLY+GN+ GDIT+N++ E+FKPYGE
Sbjct: 280 DFFIAQRLRAIAGPTLELPPVEVP-EETKFSGRNRLYVGNLTGDITDNELREMFKPYGEI 338
Query: 141 QELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVT 200
E+F N EK F F+++DY NA+KAK LDG + KGR L++RFAP ++V+NLT V+
Sbjct: 339 GEIFSNIEKNFTFLKVDYHVNAEKAKRALDGTMRKGRQLRVRFAPNATILRVRNLTPFVS 398
Query: 201 NELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLR 260
NELL +F +FG IERA + VD+RG EGIVEFA+K +A LR C E CFFLT SLR
Sbjct: 399 NELLYKSFEIFGPIERASITVDDRGKHTGEGIVEFAKKSSANACLRFCNEKCFFLTASLR 458
Query: 261 PVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHEL-- 318
P +VEP+E+ D+ DGL E+ +NKK EF ++R VGPRFA +NSFE EYGSRWKQLH+L
Sbjct: 459 PCLVEPMEVNDDNDGLPEKALNKKLQEFNQERSVGPRFADLNSFEHEYGSRWKQLHDLYK 518
Query: 319 -------------------------YEHETEMLRKELAQREIDRERQKAEWEMKERQAEE 353
YE ETE+LR+EL +RE+D ER+K EWEM+E+QAEE
Sbjct: 519 SKQDTLKRELKMEEEKLDAQMQYARYEQETELLRQELRKREVDNERKKIEWEMREKQAEE 578
Query: 354 LKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQ 395
+++RDE+ M++H EMQ R+A+QEED+RRRQ +N++F+ QQ
Sbjct: 579 MRKRDEDTMRRHQTEMQTRMARQEEDMRRRQQENTLFIQAQQ 620
>gi|198451057|ref|XP_002137212.1| GA27079, isoform A [Drosophila pseudoobscura pseudoobscura]
gi|198131315|gb|EDY67770.1| GA27079, isoform A [Drosophila pseudoobscura pseudoobscura]
Length = 714
Score = 368 bits (944), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 179/342 (52%), Positives = 241/342 (70%), Gaps = 28/342 (8%)
Query: 81 DRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGET 140
D + +++ AI GPTL+LPP E ++ KF+ RLY+GN+ GDIT+N++ E+FKPYGE
Sbjct: 280 DFFIAQRLRAIAGPTLELPPVEVP-EETKFSGRNRLYVGNLTGDITDNELREMFKPYGEI 338
Query: 141 QELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVT 200
E+F N EK F F+++DY NA+KAK LDG + KGR L++RFAP ++V+NLT V+
Sbjct: 339 GEIFSNIEKNFTFLKVDYHVNAEKAKRALDGTMRKGRQLRVRFAPNATILRVRNLTPFVS 398
Query: 201 NELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLR 260
NELL +F +FG IERA + VD+RG EGIVEFA+K +A LR C E CFFLT SLR
Sbjct: 399 NELLYKSFEIFGPIERASITVDDRGKHTGEGIVEFAKKSSANACLRFCNEKCFFLTASLR 458
Query: 261 PVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHEL-- 318
P +VEP+E+ D+ DGL E+ +NKK EF ++R VGPRFA +NSFE EYGSRWKQLH+L
Sbjct: 459 PCLVEPMEVNDDNDGLPEKALNKKLQEFNQERSVGPRFADLNSFEHEYGSRWKQLHDLYK 518
Query: 319 -------------------------YEHETEMLRKELAQREIDRERQKAEWEMKERQAEE 353
YE ETE+LR+EL +RE+D ER+K EWEM+E+QAEE
Sbjct: 519 SKQDTLKRELKMEEEKLDAQMQYARYEQETELLRQELRKREVDNERKKIEWEMREKQAEE 578
Query: 354 LKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQ 395
+++RDE+ M++H EMQ R+A+QEED+RRRQ +N++F+ QQ
Sbjct: 579 MRKRDEDTMRRHQTEMQTRMARQEEDMRRRQQENTLFIQAQQ 620
>gi|195143885|ref|XP_002012927.1| GL23854 [Drosophila persimilis]
gi|194101870|gb|EDW23913.1| GL23854 [Drosophila persimilis]
Length = 715
Score = 367 bits (943), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 203/434 (46%), Positives = 276/434 (63%), Gaps = 46/434 (10%)
Query: 81 DRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGET 140
D + +++ AI GPTL+LPP E ++ KF+ RLY+GN+ GDIT+N++ E+FKPYGE
Sbjct: 281 DFFIAQRLRAIGGPTLELPPVEVP-EETKFSGRNRLYVGNLTGDITDNELREMFKPYGEI 339
Query: 141 QELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVT 200
E+F N EK F F+++DY NA+KAK LDG + KGR L++RFAP ++V+NLT V+
Sbjct: 340 GEIFSNIEKNFTFLKVDYHVNAEKAKRALDGTMRKGRQLRVRFAPNATILRVRNLTPFVS 399
Query: 201 NELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLR 260
NELL +F +FG IERA + VD+RG EGIVEFA+K +A LR C E CFFLT SLR
Sbjct: 400 NELLYKSFEIFGPIERASITVDDRGKHTGEGIVEFAKKSSANACLRFCNEKCFFLTASLR 459
Query: 261 PVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHEL-- 318
P +VEP+E+ D+ DGL E+ +NKK EF ++R VGPRFA +NSFE EYGSRWKQLH+L
Sbjct: 460 PCLVEPMEVNDDNDGLPEKALNKKLQEFNQERSVGPRFADLNSFEHEYGSRWKQLHDLYK 519
Query: 319 -------------------------YEHETEMLRKELAQREIDRERQKAEWEMKERQAEE 353
YE ETE+LR+EL +RE+D ER+K EWEM+E+QAEE
Sbjct: 520 SKQDTLKRELKMEEEKLDAQMQYARYEQETELLRQELRKREVDNERKKIEWEMREKQAEE 579
Query: 354 LKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMF--------LVEQQQG---RGGSG 402
+++RDE+ M++H EMQ R+A+QEED+RRRQ +N++F L++QQ+G GG G
Sbjct: 580 MRKRDEDTMRRHQTEMQTRMARQEEDMRRRQQENTLFIQAQQLNSLLDQQEGFVGNGGGG 639
Query: 403 GYGSPGQAYGNAIIDFEALAAAVGNA-VVGNVTGV--DNKGSAMDFDQGGRSGGGGGRRN 459
S GN+ FE N+ + GN +G NK + F+ GG + G +
Sbjct: 640 NNSSFDNFGGNSNSPFEVFRGNNNNSTMTGNSSGPGGPNKQDSFAFEFGGNNMNQGANQR 699
Query: 460 DSASSG----WSRR 469
+ G W RR
Sbjct: 700 GNNVGGNNVPWGRR 713
>gi|322802525|gb|EFZ22840.1| hypothetical protein SINV_09391 [Solenopsis invicta]
Length = 590
Score = 365 bits (938), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 194/364 (53%), Positives = 248/364 (68%), Gaps = 39/364 (10%)
Query: 81 DRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGET 140
D E++MAI GPT +LPP + K KF+ RLY+GN+ D++E +I LF+ +GE
Sbjct: 151 DDRLMERVMAISGPTHELPPQDITEK--KFSGRNRLYVGNLTNDVSEEEIQTLFQKFGEI 208
Query: 141 QELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVT 200
ELF+NKEK F F+RMDYK NAD AK +LDG + KGR+LK+RFAP ++ IKVKNLTS +
Sbjct: 209 SELFVNKEKSFAFLRMDYKANADMAKRELDGSMRKGRALKVRFAPHSSTIKVKNLTSWTS 268
Query: 201 NELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLR 260
NELLE AF VFG+IERAIV VD+RG S EGIVEF RKP+A ALR+C EGC+F+T SLR
Sbjct: 269 NELLERAFSVFGEIERAIVKVDDRGKSTGEGIVEFCRKPSAQLALRKCTEGCYFITASLR 328
Query: 261 PVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHEL-- 318
PV+VEP E D++DG ++ + +K PEF+K R++GPRFA + SFE EYG+RWKQLHEL
Sbjct: 329 PVVVEPFEQQDDVDGYPDKNLPRKNPEFFKAREIGPRFAQLGSFEHEYGTRWKQLHELYK 388
Query: 319 -------------------------YEHETEMLRKELAQREIDRERQKAEWEMKERQAEE 353
YEHETE+LR++L RE DRERQK EWEMKERQAEE
Sbjct: 389 QKEEALKREMAMEEEKLEAQMEFARYEHETELLREQLRMREADRERQKREWEMKERQAEE 448
Query: 354 LKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQQGRGGSG----------G 403
+ R+EEL ++ EEM +R+ +QEE+L RRQ +N++F+ EQ G G
Sbjct: 449 QRTREEELRRRQQEEMAIRIRRQEEELHRRQQENNLFMQEQAIRSSGKNYDSVSSNDRDG 508
Query: 404 YGSP 407
YG P
Sbjct: 509 YGQP 512
>gi|340708632|ref|XP_003392926.1| PREDICTED: hrp65 protein-like [Bombus terrestris]
Length = 579
Score = 365 bits (938), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 192/352 (54%), Positives = 248/352 (70%), Gaps = 34/352 (9%)
Query: 74 MGGGGGGDRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIEL 133
MG DR E+IMAI GPT DL P P+ + KF+ RLY+GN+ D+TE +I ++
Sbjct: 122 MGNRSQDDR-LMERIMAISGPTHDLSP--PETTEKKFSGRNRLYIGNLSNDVTEEEIQQI 178
Query: 134 FKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVL----KGRSLKIRFAPINAA 189
F+ YGE ELF+NKEK F F+RMDY+ NA+KAK +LDG + KGR+LK+RFAP ++
Sbjct: 179 FQQYGEISELFVNKEKNFAFLRMDYRVNAEKAKHELDGKNVFTNSKGRALKVRFAPHSST 238
Query: 190 IKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCA 249
+KVKNLT +TNELLE AF VFG+IERAIVI D++G S EGIVEF RKP+A ALR+C
Sbjct: 239 VKVKNLTPWITNELLERAFSVFGEIERAIVIADDKGKSTGEGIVEFCRKPSAQLALRKCT 298
Query: 250 EGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYG 309
EGC+FLT SLRPV+V+P EL D+IDG S++ + +K EF+ R +GPRFA + SFE+EYG
Sbjct: 299 EGCYFLTASLRPVVVKPFELLDDIDGYSDKNLPRKNQEFFTARDIGPRFAKIGSFEYEYG 358
Query: 310 SRWKQLHEL---------------------------YEHETEMLRKELAQREIDRERQKA 342
+RWKQLHEL YEHETE+LR++L RE DRERQK
Sbjct: 359 TRWKQLHELYEQKEEALKREMAMEEEKLEAQMEFARYEHETELLREQLRMREADRERQKR 418
Query: 343 EWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQ 394
EWEMKERQAEE + R+EEL ++ EEM +R+ +QEE+L RRQ +N++F+ EQ
Sbjct: 419 EWEMKERQAEEQRTREEELRRRQQEEMAMRIRRQEEELHRRQQENNLFMQEQ 470
>gi|156549847|ref|XP_001606842.1| PREDICTED: hrp65 protein-like [Nasonia vitripennis]
Length = 646
Score = 365 bits (936), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 193/350 (55%), Positives = 246/350 (70%), Gaps = 30/350 (8%)
Query: 72 SRMGGGGGGDRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDII 131
S M DR E++M+I GPT +LPP + + K KF+ RLY+GN+ DI+E +I
Sbjct: 175 SMMQSRSQDDR-LMERVMSISGPTHELPPQDIEEK--KFSGRNRLYVGNLTNDISEEEIQ 231
Query: 132 ELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIK 191
++F YGE ELFINKEK F F+R+D+ NA+KAK +LDG V KGR LK+RFAP ++ +K
Sbjct: 232 QMFSCYGEISELFINKEKNFAFLRLDFHANAEKAKRELDGTVRKGRVLKVRFAPHSSTVK 291
Query: 192 VKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEG 251
VKNLT ++NELL AFGVFG++ERA+VIVDERG S EGIVEF+RKP+A ALR+C EG
Sbjct: 292 VKNLTPWISNELLAHAFGVFGELERAVVIVDERGKSTGEGIVEFSRKPSAQLALRKCTEG 351
Query: 252 CFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSR 311
CFFLT SLRPV+VEP E D+IDG ++ + +K +FYK R VGPRFA + SFE EYG+R
Sbjct: 352 CFFLTASLRPVVVEPFEQNDDIDGYPDKNLPRKNADFYKARDVGPRFANIGSFEHEYGTR 411
Query: 312 WKQLHEL---------------------------YEHETEMLRKELAQREIDRERQKAEW 344
WKQLHEL YEHETE+LR++L RE DRERQK EW
Sbjct: 412 WKQLHELYKQKEEALKREMAMEEEKLEAQMEFARYEHETELLREQLRMREADRERQKREW 471
Query: 345 EMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQ 394
EMKERQAEE + R+EEL ++ EEM LR+ +QEE+L RRQ +N++F+ EQ
Sbjct: 472 EMKERQAEEQRTREEELRRRQQEEMALRIRRQEEELHRRQQENNLFMQEQ 521
>gi|332018327|gb|EGI58932.1| Hrp65 protein [Acromyrmex echinatior]
Length = 510
Score = 363 bits (933), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 188/348 (54%), Positives = 245/348 (70%), Gaps = 30/348 (8%)
Query: 74 MGGGGGGDRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIEL 133
M DR E++MA+ GPT +LPP + K KF+ RLY+GN+ D+TE +I +
Sbjct: 61 MANRSQDDR-LMERVMAVSGPTHELPPQDTTEK--KFSGRNRLYVGNLTNDVTEEEIQTM 117
Query: 134 FKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVK 193
F+ YGE ELF+NKEK F F+R+DYK NAD AK +LDG + KGR+LK+RFAP ++ IKVK
Sbjct: 118 FQKYGEISELFVNKEKSFAFLRLDYKANADTAKRELDGSMRKGRALKVRFAPHSSTIKVK 177
Query: 194 NLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCF 253
NLT +NELLE AF VFG+IERAIV VD+RG + EGIVEF RKP+A ALR+C EGC+
Sbjct: 178 NLTPWTSNELLERAFSVFGEIERAIVKVDDRGKTTGEGIVEFCRKPSAQLALRKCTEGCY 237
Query: 254 FLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWK 313
F+T SLRPV+VEP E D++DG ++++ +K PEF+K R++GPRFA + SFE EYG+RWK
Sbjct: 238 FITASLRPVVVEPFEQQDDVDGYPDKSLPRKNPEFFKAREIGPRFAQLGSFEHEYGTRWK 297
Query: 314 QLHEL---------------------------YEHETEMLRKELAQREIDRERQKAEWEM 346
QLHEL YEHETE+LR++L RE DRERQK EWEM
Sbjct: 298 QLHELYKQKEEALKREMAMEEEKLEAQMEFARYEHETELLREQLRMREADRERQKREWEM 357
Query: 347 KERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQ 394
KERQAEE + R+EEL ++ EEM +R+ +QEE+L RRQ +N++F+ EQ
Sbjct: 358 KERQAEEQRTREEELRRRQQEEMAIRIRRQEEELHRRQQENNLFMQEQ 405
>gi|350412995|ref|XP_003489842.1| PREDICTED: hrp65 protein-like [Bombus impatiens]
Length = 504
Score = 362 bits (930), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 213/461 (46%), Positives = 278/461 (60%), Gaps = 58/461 (12%)
Query: 79 GGDRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYG 138
G DR E+IM+I GPT DLPP E K KF+ RLY+GN+ D+TE +I ++F+ YG
Sbjct: 63 GPDR-LIERIMSISGPTHDLPPQETTEK--KFSGRNRLYIGNLTNDVTEEEIQQMFQQYG 119
Query: 139 ETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSC 198
ET ELF+NKEK F F++MDY+ NA+KAK +LD ++KGR+LK+RFAP+++ IKVKNLT
Sbjct: 120 ETSELFLNKEKNFSFVKMDYRVNAEKAKHELDRKMVKGRALKVRFAPLDSTIKVKNLTPW 179
Query: 199 VTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQS 258
++NELLE AF VFG++ERAIVIVD++G S EGI+EF +K +A ALR+C EGC+ LT S
Sbjct: 180 ISNELLEKAFSVFGEVERAIVIVDKKGKSSGEGIIEFCKKNSAQLALRKCTEGCYRLTAS 239
Query: 259 LRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHEL 318
PVIVE E D+IDG ++T+ +T EF+K R++GPRFA V SFE+EYG+RWKQL+EL
Sbjct: 240 PLPVIVELFEQQDDIDGYPDKTL-PRTTEFFKAREIGPRFAEVGSFEYEYGTRWKQLYEL 298
Query: 319 ---------------------------YEHETEMLRKELAQREIDRERQKAEWEMKERQA 351
E ET+ LR+EL RE DRERQK EWEMKERQA
Sbjct: 299 RKQKIEAIEREMAIEEEKLEAQMEFERCEFETKRLREELRMREADRERQKREWEMKERQA 358
Query: 352 EELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQQGRGGSGGYGSP---- 407
EE + RDEEL ++ EEM + + +QEE+L RRQ +N++FL Q GG G P
Sbjct: 359 EEHRTRDEELRRRQQEEMAMAIRRQEEELHRRQQENNLFLQGQAMRGGGVGKSYDPISND 418
Query: 408 ----GQAYG--NAIIDFEALAAAVGNAVVGNVTGVDNKGSAMDFDQGGRSGGGGGRRNDS 461
GQ G N +D + A N G+ ++ S MD R N
Sbjct: 419 RDGFGQPDGGSNMPVDPKTFMNAYNNMDRGSRGVYNDDRSQMDL--------RNTRVNMG 470
Query: 462 ASSGWSRREGGAGRWGPSVDHGSRRGGSGGGGPTDYQPKRR 502
+ G R GRW +GG+ DY KRR
Sbjct: 471 GNRGSGRGNSAGGRW---------QGGNDRNRQNDYPNKRR 502
>gi|307185331|gb|EFN71412.1| Hrp65 protein [Camponotus floridanus]
Length = 548
Score = 361 bits (927), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 208/414 (50%), Positives = 266/414 (64%), Gaps = 47/414 (11%)
Query: 74 MGGGGGGDRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIEL 133
M DR E++MAI GPT +LP + K KF+ RLY+GN+ D+TE +I +
Sbjct: 100 MANRSQDDR-LMERVMAIGGPTHELPLQDTTEK--KFSGRNRLYIGNLTNDVTEEEIQTM 156
Query: 134 FKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVK 193
F+ YGE ELF+NKEK F F+RMDYK NAD AK +LDG + KGR+LK+RFAP ++ IKVK
Sbjct: 157 FQKYGEISELFVNKEKSFAFLRMDYKANADTAKRELDGTMRKGRALKVRFAPHSSTIKVK 216
Query: 194 NLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCF 253
NLT +NELLE AFGVFG+IERAIV VDERG + EGIVEF RKP+A ALR+C EGC+
Sbjct: 217 NLTPWTSNELLERAFGVFGEIERAIVKVDERGKTTGEGIVEFCRKPSAQLALRKCTEGCY 276
Query: 254 FLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWK 313
F+T SLRPV+VE E D++DG ++ + +K PEF+K R++GPRFA + SFE EYG+RWK
Sbjct: 277 FVTASLRPVVVELFEQQDDVDGYPDKNLPRKNPEFFKAREIGPRFAQLGSFEHEYGTRWK 336
Query: 314 QLHEL---------------------------YEHETEMLRKELAQREIDRERQKAEWEM 346
QLHEL YEHETE+LR++L RE DRERQK EWEM
Sbjct: 337 QLHELYKQKEEALKREMAMEEEKLEAQMEFARYEHETELLREQLRMREADRERQKREWEM 396
Query: 347 KERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQQGRGGSG---- 402
KERQAEE + R+EEL ++ EEM +R+ +QEE+L RRQ +N++F+ E Q R GSG
Sbjct: 397 KERQAEEQRTREEELRRRQQEEMAIRIRRQEEELHRRQQENNLFMQE-QAIRSGSGKNYD 455
Query: 403 --------GYGSPGQAYGNAIIDFEALAAAVGNAVVGNVTGV---DNKGSAMDF 445
GYG P G +D ++ A N G G D++G MD
Sbjct: 456 SVSNNDRDGYGQPDGGSG-MPVDPKSFMDAYNNMDRGGRGGGGYNDDRGQIMDL 508
>gi|198469596|ref|XP_002134358.1| GA23435 [Drosophila pseudoobscura pseudoobscura]
gi|198146946|gb|EDY72985.1| GA23435 [Drosophila pseudoobscura pseudoobscura]
Length = 696
Score = 360 bits (925), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 194/416 (46%), Positives = 266/416 (63%), Gaps = 52/416 (12%)
Query: 81 DRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGET 140
D + +++ AI GPTL+LPP E ++ KF+ RLY+GN+ GDIT+N++ E+FKP+GE
Sbjct: 265 DFFIGQRLRAIAGPTLELPPVEVP-EETKFSGRNRLYVGNLTGDITDNELREMFKPFGEI 323
Query: 141 QELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVT 200
E+F N EK F F+++DY NA+KAK LDG + KGR L++RFAP ++V NLT V+
Sbjct: 324 GEIFSNIEKNFTFLKVDYHVNAEKAKRALDGSLRKGRQLRVRFAPNATILRVSNLTPFVS 383
Query: 201 NELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLR 260
NELL +F +FG +ERA + VD+RG EGIVEFA+K +A+ LR C E CFFLT SLR
Sbjct: 384 NELLYKSFEIFGPLERASITVDDRGKHTGEGIVEFAKKSSASACLRLCNEKCFFLTASLR 443
Query: 261 PVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHEL-- 318
P +VEP+E+ D+ DGL E+ +NKK +F ++R VGPRFA +NSFE EYGSRWKQLH+L
Sbjct: 444 PCLVEPMEVNDDNDGLPEKALNKKLQDFNQERSVGPRFADLNSFEHEYGSRWKQLHDLYK 503
Query: 319 -------------------------YEHETEMLRKELAQREIDRERQKAEWEMKERQAEE 353
YE ETE+LR+EL +RE+D ER+K EWEM+E+QAE+
Sbjct: 504 SKQDALKRELKMEEDKLEAQMEYARYEQETELLRQELRKREVDNERKKMEWEMREKQAED 563
Query: 354 LKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMF--------LVEQQQGRGGSGGYG 405
+++RDE+ M++H EMQ R+ +QEED+RRRQ +N++F L++QQ+G GG GG
Sbjct: 564 MRKRDEDTMRRHQSEMQTRMVRQEEDMRRRQQENTLFIQAQQLNSLLDQQEGCGGGGGNN 623
Query: 406 SPGQAYGNAIIDFEALAAAVGNAVVGNVTGVDNKGSAMDFDQGGRSGGGGGRRNDS 461
S +G + FE +N S M G SG GG + DS
Sbjct: 624 SSFDNFGGSSSPFEVFRG-------------NNNNSTM---TGNNSGPGGPNKQDS 663
>gi|403182697|gb|EJY57571.1| AAEL017116-PA [Aedes aegypti]
gi|403182698|gb|EJY57572.1| AAEL017116-PB [Aedes aegypti]
Length = 600
Score = 360 bits (923), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 184/349 (52%), Positives = 237/349 (67%), Gaps = 30/349 (8%)
Query: 77 GGGGDRYF-TEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFK 135
G G++YF EK+ +QGP +D+PP E + ++KF+ RLY+GN+ DITE +++ELF+
Sbjct: 151 SGPGEQYFINEKLRMLQGPLMDIPPIETE--EVKFSGRNRLYIGNLTNDITEEELVELFR 208
Query: 136 PYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNL 195
PYG+ E+F+NKEK + F+R+DY NA+KAK +L+G + K R L++RFAP AI+V+NL
Sbjct: 209 PYGDISEVFMNKEKNYAFVRVDYFSNAEKAKRELEGTMRKNRMLRVRFAPNATAIRVRNL 268
Query: 196 TSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFL 255
T V+NELL AF VFG +ERA V VDERG S EGIVEF KP A ALR C+E CFFL
Sbjct: 269 TPWVSNELLFKAFEVFGPVERASVHVDERGKSTGEGIVEFKNKPGAMVALRYCSEKCFFL 328
Query: 256 TQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQL 315
T SLRPVIVEP D+ DGL E+++NKK P+F K RQ GPRFA SFE EYG RWKQ+
Sbjct: 329 TASLRPVIVEPYTYQDDTDGLPEKSMNKKIPDFQKARQQGPRFADHGSFEHEYGQRWKQM 388
Query: 316 HEL---------------------------YEHETEMLRKELAQREIDRERQKAEWEMKE 348
HEL YEHETE LR++L RE DR+RQKAEWEMKE
Sbjct: 389 HELYKQKAEALKREMIMEEEKLEAQMEFARYEHETEQLREQLRMREQDRDRQKAEWEMKE 448
Query: 349 RQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQQG 397
R A E K+R++ MK EEMQ R+ + +E+L RRQ +N++F+ QQ G
Sbjct: 449 RMASEAKQRNDMQMKHDVEEMQNRIKRTDEELHRRQQENNVFMQNQQMG 497
>gi|195448278|ref|XP_002071587.1| GK25061 [Drosophila willistoni]
gi|194167672|gb|EDW82573.1| GK25061 [Drosophila willistoni]
Length = 694
Score = 358 bits (920), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 174/340 (51%), Positives = 237/340 (69%), Gaps = 28/340 (8%)
Query: 83 YFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQE 142
+ +++ +I GPT++LPP E + + KF+ RLY+GN+ GDIT++++ E+FKPYGE E
Sbjct: 258 FIAQRLRSISGPTVELPPIEVPH-ETKFSGRNRLYVGNLTGDITDDELREMFKPYGEIGE 316
Query: 143 LFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNE 202
+F N EK F F+++DY NA+KAK LDG + KGR L++RFAP +KV NLT V+NE
Sbjct: 317 IFSNLEKNFTFLKVDYHINAEKAKRALDGSMRKGRQLRVRFAPNATILKVGNLTPFVSNE 376
Query: 203 LLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPV 262
LL +F +FG IERA + VD+RG EGIVEFA+K +A+ LR C E CFFLT SLRP
Sbjct: 377 LLYKSFEIFGPIERASITVDDRGKHTGEGIVEFAKKSSASACLRLCNEKCFFLTASLRPC 436
Query: 263 IVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHEL---- 318
+VEPLE+ D+ DGL E+ INKK EF ++R +GPRFA NSFE EYGSRWKQLH+L
Sbjct: 437 LVEPLEVNDDNDGLPEKAINKKLQEFNQERSIGPRFADANSFEHEYGSRWKQLHDLFKSK 496
Query: 319 -----------------------YEHETEMLRKELAQREIDRERQKAEWEMKERQAEELK 355
YE ETE+LR+EL +RE D ER+K EWEM+E+QAE+++
Sbjct: 497 QDALKRELKMEEEKLEAQMEYARYEQETELLRQELRKRETDNERKKMEWEMREKQAEDMR 556
Query: 356 RRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQ 395
+RDE+ M++H ++Q R+ +QEED+RRRQ +NS+F+ QQ
Sbjct: 557 KRDEDTMRRHQSDLQSRMVRQEEDMRRRQQENSLFMQAQQ 596
>gi|194900595|ref|XP_001979841.1| GG21764 [Drosophila erecta]
gi|190651544|gb|EDV48799.1| GG21764 [Drosophila erecta]
Length = 675
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 208/470 (44%), Positives = 288/470 (61%), Gaps = 58/470 (12%)
Query: 42 GRGGGRGGGVGGRGGYRGNRPDGRGSDMNESRMGGGG--GGDRYFTEKIMAIQGPTLDLP 99
G G G+ G + G RG R G G MN S +GGGG G D + T+++ + GPT +LP
Sbjct: 220 GAGCGKQQRGGQQRGNRGMRSGGPGG-MNNSLLGGGGQRGEDFFITQRLRNMGGPTHELP 278
Query: 100 PSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYK 159
P E + + KF+ RLY+GN+ DIT++++ E+FKPYGE E+F N +K F F+++DY
Sbjct: 279 PIELPS-EAKFSGRNRLYVGNLTNDITDDELREMFKPYGEIGEIFSNPDKNFTFLKVDYH 337
Query: 160 HNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIV 219
NA+KAK LDG + KGR L++RFAP ++V NL VTNELL +F +FG IERAI+
Sbjct: 338 PNAEKAKRALDGSMRKGRQLRVRFAPNATILRVSNLNQFVTNELLYQSFEIFGPIERAII 397
Query: 220 IVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSER 279
VD+RG EGIVEFA+K +A+ LR C E CFFLT SLRP +VEP+E+ D+ DGL E+
Sbjct: 398 SVDDRGKHTGEGIVEFAKKSSASACLRMCNEKCFFLTASLRPCLVEPMEVNDDNDGLPEK 457
Query: 280 TINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHEL--------------------- 318
INKK P+F ++R +GPRFA VNSFE EYGSRWKQLH+L
Sbjct: 458 AINKKMPDFCQERSIGPRFADVNSFEHEYGSRWKQLHDLFKSKQDALKRELKMEEDKLEA 517
Query: 319 ------YEHETEMLRKELAQREIDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQLR 372
YE ETE LR+EL +RE+D ER+K EWE++E+QAEE+++R+EE M++H Q +
Sbjct: 518 QMEYARYEQETERLRQELRKREVDNERKKLEWEIREKQAEEMRKREEEHMRRH----QSQ 573
Query: 373 LAQQEEDLRRRQNDNSMF--------LVEQQQGRGGSGGYGSPGQAYGNAI-IDFEALAA 423
+ +QEED+R RQ ++ + +++QQ+G GGS + N + FE
Sbjct: 574 MLRQEEDMRARQQESELLIQAQQLNMILDQQEGFGGSNS------GFENFVESPFEVFTN 627
Query: 424 AVGN-AVVGNVTGVDNKGSAMDFDQGGRSGGGGGRRNDSA---SSGWSRR 469
N A+VG +G G +F+ G G +R +S S+ W RR
Sbjct: 628 NSNNSAMVGINSGPGGPGPDSNFE----FGAGVNQRGNSGVGNSAPWGRR 673
>gi|109706829|gb|ABG43001.1| splicing factor proline- and glutamine-rich [Bombyx mori]
Length = 641
Score = 355 bits (912), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 172/338 (50%), Positives = 230/338 (68%), Gaps = 29/338 (8%)
Query: 84 FTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQEL 143
+ K+ +QGP DLPP E ++KF RLY+GN+ D+TE +I+++F P+GE EL
Sbjct: 246 LSNKLKDLQGPLFDLPPME--QSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASEL 303
Query: 144 FINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNEL 203
F+NKEK FGFI+MDY+ NA++AK +LDG + R+L++RFAP N+A++VKNL V+NEL
Sbjct: 304 FLNKEKNFGFIKMDYRVNAERAKRELDGKLRNSRTLRVRFAPHNSAVRVKNLPPFVSNEL 363
Query: 204 LELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVI 263
L +F +FG IERA V VDERG + EG+VEFARKP+A A+R C E CFFLT SLRPVI
Sbjct: 364 LYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSALSAIRNCTEKCFFLTSSLRPVI 423
Query: 264 VEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHEL----- 318
VE E DE DG E+ + KK PEF K R++GPRF+ +NSFE EYG+RWKQLHEL
Sbjct: 424 VESFEEPDEFDGYPEKNLPKKHPEFTKARELGPRFSELNSFEHEYGTRWKQLHELHRQKE 483
Query: 319 ----------------------YEHETEMLRKELAQREIDRERQKAEWEMKERQAEELKR 356
YEHETE+LR++L QRE DRERQK WEM ER A+E +
Sbjct: 484 EALKKELAAEEEKLEAQMEYAKYEHETELLREQLRQREQDRERQKRSWEMAERAADERRE 543
Query: 357 RDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQ 394
+ + + +H EE+ R+ Q+++LRRRQ +N++F+ Q
Sbjct: 544 AERQQLMRHEEELSQRMRLQDDELRRRQQENTLFVQAQ 581
>gi|114326261|ref|NP_001037408.2| PTB-associated splicing factor [Bombyx mori]
gi|87248575|gb|ABD36340.1| PTB-associated splicing factor [Bombyx mori]
Length = 641
Score = 355 bits (911), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 172/338 (50%), Positives = 230/338 (68%), Gaps = 29/338 (8%)
Query: 84 FTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQEL 143
+ K+ +QGP DLPP E ++KF RLY+GN+ D+TE +I+++F P+GE EL
Sbjct: 246 LSNKLKDLQGPLFDLPPME--QSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASEL 303
Query: 144 FINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNEL 203
F+NKEK FGFI+MDY+ NA++AK +LDG + R+L++RFAP N+A++VKNL V+NEL
Sbjct: 304 FLNKEKNFGFIKMDYRVNAERAKRELDGKLRNSRTLRVRFAPHNSAVRVKNLPPFVSNEL 363
Query: 204 LELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVI 263
L +F +FG IERA V VDERG + EG+VEFARKP+A A+R C E CFFLT SLRPVI
Sbjct: 364 LYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSALSAIRNCTEKCFFLTSSLRPVI 423
Query: 264 VEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHEL----- 318
VE E DE DG E+ + KK PEF K R++GPRF+ +NSFE EYG+RWKQLHEL
Sbjct: 424 VESFEEPDEFDGYPEKNLPKKHPEFTKARELGPRFSELNSFEHEYGTRWKQLHELHRQKE 483
Query: 319 ----------------------YEHETEMLRKELAQREIDRERQKAEWEMKERQAEELKR 356
YEHETE+LR++L QRE DRERQK WEM ER A+E +
Sbjct: 484 EALKKELAAEEEKLEAQMEYAKYEHETELLREQLRQREQDRERQKRSWEMAERAADERRE 543
Query: 357 RDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQ 394
+ + + +H EE+ R+ Q+++LRRRQ +N++F+ Q
Sbjct: 544 AERQQLMRHEEELSQRMRLQDDELRRRQQENTLFVQAQ 581
>gi|17981735|ref|NP_536740.1| nonA-like, isoform A [Drosophila melanogaster]
gi|442619490|ref|NP_001262646.1| nonA-like, isoform B [Drosophila melanogaster]
gi|7300181|gb|AAF55347.1| nonA-like, isoform A [Drosophila melanogaster]
gi|440217512|gb|AGB96026.1| nonA-like, isoform B [Drosophila melanogaster]
Length = 630
Score = 355 bits (910), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 190/398 (47%), Positives = 258/398 (64%), Gaps = 48/398 (12%)
Query: 58 RGNRPDGRG-SDMNESRMGGGG--GGDRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNC 114
RGNR G S + S MGGGG G D + ++++ I GPT +LPP E D KF
Sbjct: 207 RGNRSRRSGGSGIMNSSMGGGGQRGEDFFIAQRLLDISGPTHELPPIELP-TDNKFVGRN 265
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVL 174
RLY+GN+ D T++D+ E+FKPYGE ++F N EK F F+R+DY NA+KAK LDG +
Sbjct: 266 RLYVGNLTSDTTDDDLREMFKPYGEIGDIFSNPEKNFTFLRLDYYQNAEKAKRALDGSLR 325
Query: 175 KGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVE 234
KGR L++RFAP NA ++V NL V+NELL +F +FG IERA++ VD+RG EGIVE
Sbjct: 326 KGRVLRVRFAP-NAIVRVTNLNQFVSNELLHQSFEIFGPIERAVICVDDRGKHTGEGIVE 384
Query: 235 FARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQV 294
FA+K +A+ LR C E CFFLT SLRP +VEP+E+ ++ DGL ++T+NKK+ EF +R V
Sbjct: 385 FAKKSSASACLRLCNEKCFFLTASLRPCLVEPMEVNNDNDGLPDKTLNKKSLEFRHERSV 444
Query: 295 GPRFATVNSFEFEYGSRWKQLHEL---------------------------YEHETEMLR 327
GPRFA +NSFE EYGSRWKQLH+L YE ETE+LR
Sbjct: 445 GPRFACLNSFEHEYGSRWKQLHDLFKSKQDSLKRELKMEEDKLEAQMEYARYEQETELLR 504
Query: 328 KELAQREIDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDN 387
+EL +RE+D ER K EWEM+E+QAEE+++R+EE M ++ Q +L + EED+R RQ +N
Sbjct: 505 QELKKRELDNERMKLEWEMREKQAEEIRKREEEYMHRY----QNQLLRHEEDMRARQQEN 560
Query: 388 SMFL--------VEQQQGRGGSGG----YGSPGQAYGN 413
+ + ++QQ+G GGS + SP + +GN
Sbjct: 561 DLLMQAKKLNMILDQQEGFGGSNSGFEHFDSPFEVFGN 598
>gi|194770146|ref|XP_001967158.1| GF19266 [Drosophila ananassae]
gi|190619278|gb|EDV34802.1| GF19266 [Drosophila ananassae]
Length = 675
Score = 355 bits (910), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 171/342 (50%), Positives = 237/342 (69%), Gaps = 28/342 (8%)
Query: 81 DRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGET 140
D + +++ +I GPTL+L P E + KF+ RLY+GN+ GD+T++++ E+FKP+GE
Sbjct: 243 DFFIAQRLRSIAGPTLELAPVEVP-TEAKFSGRNRLYVGNLTGDVTDDELREMFKPFGEI 301
Query: 141 QELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVT 200
E+F N EK F F+++DY NA+KAK LDG + KGR L++RFAP ++V NLT V+
Sbjct: 302 GEIFSNVEKNFTFLKVDYHINAEKAKRALDGSMRKGRQLRVRFAPNATILRVSNLTPFVS 361
Query: 201 NELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLR 260
NELL +F +FG IERA + VD+RG EGIVEFA+K +A+ LR C E CFFLT SLR
Sbjct: 362 NELLYKSFEIFGPIERASITVDDRGKHLGEGIVEFAKKSSASACLRLCNEKCFFLTASLR 421
Query: 261 PVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHEL-- 318
P +VEP+E+ D+ DGL E+ +NKK PEF ++R VGPRFA +NSFE EYGSRWKQLH+L
Sbjct: 422 PCLVEPMEVNDDNDGLPEKALNKKMPEFNQERSVGPRFADINSFEHEYGSRWKQLHDLYK 481
Query: 319 -------------------------YEHETEMLRKELAQREIDRERQKAEWEMKERQAEE 353
YE ETE+LR+EL +RE+D ER+K EWEM+E+Q E+
Sbjct: 482 SKQDALKRELKMEEDKLEAQMEYARYEQETELLRQELRKREVDNERKKMEWEMREKQVED 541
Query: 354 LKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQ 395
+++R+EE M++H EMQ + +QEED+RRRQ +N++F+ QQ
Sbjct: 542 MRKREEETMRRHQSEMQNHMLRQEEDMRRRQQENTLFMQAQQ 583
>gi|969095|gb|AAA84417.1| no-on transient A-like protein, partial [Drosophila melanogaster]
Length = 642
Score = 354 bits (909), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 190/398 (47%), Positives = 258/398 (64%), Gaps = 48/398 (12%)
Query: 58 RGNRPDGRG-SDMNESRMGGGG--GGDRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNC 114
RGNR G S + S MGGGG G D + ++++ I GPT +LPP E D KF
Sbjct: 219 RGNRSRRSGGSGIMNSSMGGGGQRGEDFFIAQRLLDISGPTHELPPIELP-TDNKFVGRN 277
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVL 174
RLY+GN+ D T++D+ E+FKPYGE ++F N EK F F+R+DY NA+KAK LDG +
Sbjct: 278 RLYVGNLTSDTTDDDLREMFKPYGEIGDIFSNPEKNFTFLRLDYYQNAEKAKRALDGSLR 337
Query: 175 KGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVE 234
KGR L++RFAP NA ++V NL V+NELL +F +FG IERA++ VD+RG EGIVE
Sbjct: 338 KGRVLRVRFAP-NAIVRVTNLNQFVSNELLHQSFEIFGPIERAVICVDDRGKHTGEGIVE 396
Query: 235 FARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQV 294
FA+K +A+ LR C E CFFLT SLRP +VEP+E+ ++ DGL ++T+NKK+ EF +R V
Sbjct: 397 FAKKSSASACLRLCNEKCFFLTASLRPCLVEPMEVNNDNDGLPDKTLNKKSLEFRHERSV 456
Query: 295 GPRFATVNSFEFEYGSRWKQLHEL---------------------------YEHETEMLR 327
GPRFA +NSFE EYGSRWKQLH+L YE ETE+LR
Sbjct: 457 GPRFACLNSFEHEYGSRWKQLHDLFKSKQDSLKRELKMEEDKLEAQMEYARYEQETELLR 516
Query: 328 KELAQREIDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDN 387
+EL +RE+D ER K EWEM+E+QAEE+++R+EE M ++ Q +L + EED+R RQ +N
Sbjct: 517 QELKKRELDNERMKLEWEMREKQAEEIRKREEEYMHRY----QNQLLRHEEDMRARQQEN 572
Query: 388 SMFL--------VEQQQGRGGSGG----YGSPGQAYGN 413
+ + ++QQ+G GGS + SP + +GN
Sbjct: 573 DLLMQAKKLNMILDQQEGFGGSNSGFEHFDSPFEVFGN 610
>gi|75022131|sp|Q9GRW7.1|NONA_DROVI RecName: Full=Protein no-on-transient A
gi|10303243|emb|CAC10058.1| NONA protein [Drosophila virilis]
Length = 697
Score = 354 bits (909), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 173/344 (50%), Positives = 238/344 (69%), Gaps = 28/344 (8%)
Query: 79 GGDRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYG 138
G D ++++++ +I GPT +LPP E ++ KF+ RLY+GN+ DIT+ ++ E+FKPYG
Sbjct: 251 GDDFFYSQRLRSISGPTHELPPIEVA-QETKFSGRNRLYVGNLTNDITDEELREMFKPYG 309
Query: 139 ETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSC 198
E E+F N EK F F+++DY NA+KAK LDG + KGR +++RFAP ++V NLT
Sbjct: 310 EIGEIFSNLEKNFTFLKVDYHINAEKAKRPLDGSMRKGRHVRVRFAPNATILRVSNLTPF 369
Query: 199 VTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQS 258
V+NELL +F +FG IERA + VD+RG EG VEFA+K +A+ LR C E CFFLT S
Sbjct: 370 VSNELLYKSFEIFGPIERASITVDDRGKHLGEGTVEFAKKSSASACLRLCNEKCFFLTAS 429
Query: 259 LRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHEL 318
LRP +VEP+E+ D+ DGL E+ +NKK EF ++R VGPRFA +NSFE EYGSRWKQLH+L
Sbjct: 430 LRPCLVEPMEVNDDNDGLPEKALNKKLQEFNQERSVGPRFADLNSFEHEYGSRWKQLHDL 489
Query: 319 ---------------------------YEHETEMLRKELAQREIDRERQKAEWEMKERQA 351
YE ETE+LR+EL +RE D ER+K EWEM+E+QA
Sbjct: 490 FKSKQDALKRELKMEEEKLDAQMEYARYEQETELLRQELRKRESDNERKKLEWEMREKQA 549
Query: 352 EELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQ 395
EE+++R+EE M++H EMQ R+ +QEED+RRRQ +N++F+ QQ
Sbjct: 550 EEMRKREEETMRRHQTEMQSRMVRQEEDMRRRQQENTLFMQAQQ 593
>gi|195393576|ref|XP_002055430.1| nonA [Drosophila virilis]
gi|194149940|gb|EDW65631.1| nonA [Drosophila virilis]
Length = 699
Score = 354 bits (909), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 174/344 (50%), Positives = 236/344 (68%), Gaps = 28/344 (8%)
Query: 79 GGDRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYG 138
G D + +++ +I GPT +LPP E ++ KF+ RLY+GN+ DIT+ ++ E+FKPYG
Sbjct: 253 GDDFFIAQRLRSISGPTHELPPIEVA-QETKFSGRNRLYVGNLTNDITDEELREMFKPYG 311
Query: 139 ETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSC 198
E E+F N EK F F+++DY NA+KAK LDG + KGR L++RFAP ++V NLT
Sbjct: 312 EIGEIFSNLEKNFTFLKVDYHINAEKAKRALDGSMRKGRQLRVRFAPNATILRVSNLTPF 371
Query: 199 VTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQS 258
V+NELL +F +FG IERA + VD+RG EG VEFA+K +A+ LR C E CFFLT S
Sbjct: 372 VSNELLYKSFEIFGPIERASITVDDRGKHLGEGTVEFAKKSSASACLRLCNEKCFFLTAS 431
Query: 259 LRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHEL 318
LRP +VEP+E+ D+ DGL E+ +NKK EF ++R VGPRFA +NSFE EYGSRWKQLH+L
Sbjct: 432 LRPCLVEPMEVNDDNDGLPEKALNKKLQEFNQERSVGPRFADLNSFEHEYGSRWKQLHDL 491
Query: 319 ---------------------------YEHETEMLRKELAQREIDRERQKAEWEMKERQA 351
YE ETE+LR+EL +RE D ER+K EWEM+E+QA
Sbjct: 492 FKSKQDALKRELKMEEEKLDAQMEYARYEQETELLRQELRKRESDNERKKLEWEMREKQA 551
Query: 352 EELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQ 395
EE+++R+EE M++H EMQ R+ +QEED+RRRQ +N++F+ QQ
Sbjct: 552 EEMRKREEETMRRHQTEMQSRMVRQEEDMRRRQQENTLFMQAQQ 595
>gi|195134987|ref|XP_002011917.1| GI14459 [Drosophila mojavensis]
gi|193909171|gb|EDW08038.1| GI14459 [Drosophila mojavensis]
Length = 636
Score = 351 bits (901), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 174/344 (50%), Positives = 235/344 (68%), Gaps = 28/344 (8%)
Query: 79 GGDRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYG 138
G D + +++ +I GPT +LPP E ++ KF+ RLY+GN+ DIT+ ++ E+FKPYG
Sbjct: 199 GDDFFIAQRLRSISGPTHELPPIEVA-QETKFSGRNRLYVGNLTNDITDEELREMFKPYG 257
Query: 139 ETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSC 198
E E+F N EK F F+++DY NA+KAK LDG + KGR L++RFAP ++V NLT
Sbjct: 258 EIGEIFSNLEKNFTFLKVDYHVNAEKAKRALDGSMRKGRQLRVRFAPNATILRVSNLTPF 317
Query: 199 VTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQS 258
V+NELL AF +FG +ERA + VD+RG EG VEFA+K +A+ LR C E CFFLT S
Sbjct: 318 VSNELLYKAFEIFGPVERASITVDDRGKHLGEGTVEFAKKSSASACLRLCNEKCFFLTAS 377
Query: 259 LRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHEL 318
LRP +VEP+E+ D+ DGL E+ +NKK EF ++R VGPRFA NSFE EYGSRWKQLH+L
Sbjct: 378 LRPCLVEPMEVNDDNDGLPEKALNKKLQEFNQERSVGPRFADQNSFEHEYGSRWKQLHDL 437
Query: 319 ---------------------------YEHETEMLRKELAQREIDRERQKAEWEMKERQA 351
YE ETE+LR+EL +RE D ER+K EWEM+E+QA
Sbjct: 438 FKSKQDALKRELKMEEEKLEAQMEYARYEQETELLRQELRKRESDNERKKLEWEMREKQA 497
Query: 352 EELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQ 395
EE+++R+EE M++H EMQ R+ +QEED+RRRQ +N++F+ QQ
Sbjct: 498 EEMRKREEETMRRHQTEMQSRMVRQEEDMRRRQQENTLFMQAQQ 541
>gi|21430646|gb|AAM51001.1| RE44625p [Drosophila melanogaster]
Length = 411
Score = 348 bits (894), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 184/383 (48%), Positives = 250/383 (65%), Gaps = 47/383 (12%)
Query: 72 SRMGGGG--GGDRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITEND 129
S MGGGG G D + ++++ I GPT +LPP E D KF RLY+GN+ D T++D
Sbjct: 3 SSMGGGGQRGEDFFIAQRLLDISGPTHELPPIELPT-DNKFVGRNRLYVGNLTSDTTDDD 61
Query: 130 IIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAA 189
+ E+FKPYGE ++F N EK F F+R+DY NA+KAK LDG + KGR L++RFAP NA
Sbjct: 62 LREMFKPYGEIGDIFSNPEKNFTFLRLDYYQNAEKAKRALDGSLRKGRVLRVRFAP-NAF 120
Query: 190 IKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCA 249
++V NL V+NELL +F +FG IERA++ VD+RG EGIVEFA+K +A+ LR C
Sbjct: 121 VRVTNLNQFVSNELLHQSFEIFGPIERAVICVDDRGKHTGEGIVEFAKKSSASACLRLCN 180
Query: 250 EGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYG 309
E CFFLT SLRP +VEP+E+ ++ DGL ++T+NKK+ EF +R VGPRFA +NSFE EYG
Sbjct: 181 EKCFFLTASLRPCLVEPMEVNNDNDGLPDKTLNKKSLEFRHERSVGPRFACLNSFEHEYG 240
Query: 310 SRWKQLHEL---------------------------YEHETEMLRKELAQREIDRERQKA 342
SRWKQLH+L YE ETE+LR+EL +RE+D ER K
Sbjct: 241 SRWKQLHDLFKSKQDSLKRELKMEEDKLEAQMEYARYEQETELLRQELKKRELDNERMKL 300
Query: 343 EWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFL--------VEQ 394
EWEM+E+QAEE+++R+EE M ++ Q +L + EED+R RQ N + + ++Q
Sbjct: 301 EWEMREKQAEEIRKREEEYMHRY----QNQLLRHEEDMRARQQGNDLLMQAKKLNMILDQ 356
Query: 395 QQGRGGSGG----YGSPGQAYGN 413
Q+G GGS + SP + +GN
Sbjct: 357 QEGFGGSNSGFEHFDSPFEVFGN 379
>gi|75022134|sp|Q9GRX4.1|NONA_DROLR RecName: Full=Protein no-on-transient A
gi|11065697|emb|CAC14308.1| NONA protein [Drosophila littoralis]
Length = 698
Score = 348 bits (894), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 171/344 (49%), Positives = 235/344 (68%), Gaps = 28/344 (8%)
Query: 79 GGDRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYG 138
G D + +++ +I GPT +LPP E ++ KF+ RLY+GN+ DIT+ ++ E+FKPYG
Sbjct: 247 GDDFFIAQRLRSISGPTHELPPIEVA-QETKFSGRNRLYVGNLTNDITDEELREMFKPYG 305
Query: 139 ETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSC 198
E E+F N EK F F+++DY NA+KAK LDG + KGR L++RFAP ++V NLT
Sbjct: 306 EIGEIFSNLEKNFTFLKVDYHINAEKAKRALDGSMRKGRQLRVRFAPNATILRVSNLTPF 365
Query: 199 VTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQS 258
V+NELL +F +FG IERA + VD+RG EG VEFA+K +A+ LR C E CFFLT S
Sbjct: 366 VSNELLYKSFEIFGPIERASITVDDRGKHLGEGTVEFAKKSSASACLRLCNEKCFFLTAS 425
Query: 259 LRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHEL 318
LRP +VEP+E+ D+ DGL E+ +NKK EF ++R VGPRFA +NSFE EYGSRWKQLH+L
Sbjct: 426 LRPCLVEPMEVNDDNDGLPEKALNKKLQEFNQERSVGPRFADLNSFEHEYGSRWKQLHDL 485
Query: 319 YE---------------------------HETEMLRKELAQREIDRERQKAEWEMKERQA 351
++ ETE+ R+EL +RE D ER+K EWEM+E+QA
Sbjct: 486 FKSKQDALKRELKMEEEKLDAQMEYARYGQETELSRQELRKRESDNERKKLEWEMREKQA 545
Query: 352 EELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQ 395
EE+++R+EE M++H EMQ R+ +QEED+RRRQ +N++F+ QQ
Sbjct: 546 EEMRKREEETMRRHQTEMQSRMVRQEEDMRRRQQENTLFMQAQQ 589
>gi|195042795|ref|XP_001991499.1| GH12694 [Drosophila grimshawi]
gi|193901257|gb|EDW00124.1| GH12694 [Drosophila grimshawi]
Length = 721
Score = 347 bits (891), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 172/344 (50%), Positives = 234/344 (68%), Gaps = 28/344 (8%)
Query: 79 GGDRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYG 138
G D + +++ +I GPT +LPP E ++ KF+ RLY+GN+ DIT+ ++ ++FKPYG
Sbjct: 225 GDDFFIAQRLRSISGPTHELPPIEVA-QETKFSGRNRLYVGNLTNDITDEELRDMFKPYG 283
Query: 139 ETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSC 198
E E+F N EK F F+++DY NA+KAK LDG + KGR L++RFAP ++V NLT
Sbjct: 284 EIGEIFSNLEKNFTFLKVDYHINAEKAKRALDGSLRKGRQLRVRFAPNATILRVSNLTPF 343
Query: 199 VTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQS 258
V+NELL +F +FG IERA + VD+RG EG VEFA+K +A+ LR C E CFFLT S
Sbjct: 344 VSNELLYKSFEIFGPIERASITVDDRGKHLGEGTVEFAKKSSASACLRLCNEKCFFLTAS 403
Query: 259 LRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHEL 318
LRP +VEP+E+ D+ DGL E+ +NKK EF ++R VGPRFA +NSFE EYGSRWKQLH+L
Sbjct: 404 LRPCLVEPMEVNDDNDGLPEKALNKKLQEFNQERSVGPRFADLNSFEHEYGSRWKQLHDL 463
Query: 319 ---------------------------YEHETEMLRKELAQREIDRERQKAEWEMKERQA 351
YE ETE+LR+EL QRE D ER+K EWEM+E+QA
Sbjct: 464 FKSKQDALKRELKMEEEKLEAQMEYARYEQETELLRQELRQRESDNERKKLEWEMREKQA 523
Query: 352 EELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQ 395
E++++R+EE M++H EMQ R+ +QEED+R RQ N++F+ QQ
Sbjct: 524 EDMRKREEETMRRHQTEMQSRMVRQEEDMRHRQQKNTLFMQAQQ 567
>gi|24642482|ref|NP_523367.2| no on or off transient A, isoform A [Drosophila melanogaster]
gi|82592514|sp|Q04047.2|NONA_DROME RecName: Full=Protein no-on-transient A; AltName:
Full=Puff-specific protein Bj6
gi|21429172|gb|AAM50305.1| RE58280p [Drosophila melanogaster]
gi|22832362|gb|AAF48597.2| no on or off transient A, isoform A [Drosophila melanogaster]
gi|220948618|gb|ACL86852.1| nonA-PA [synthetic construct]
Length = 700
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 168/342 (49%), Positives = 232/342 (67%), Gaps = 29/342 (8%)
Query: 81 DRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGET 140
D + T+++ +I GPT +L P E + KF+ RLY+GN+ DIT++++ E+FKPYGE
Sbjct: 270 DFFITQRLRSISGPTFELEPVEVP-TETKFSGRNRLYVGNLTNDITDDELREMFKPYGEI 328
Query: 141 QELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVT 200
E+F N +K F F+++DY NA+KAK LDG + KGR L++RFAP ++V NLT V+
Sbjct: 329 SEIFSNLDKNFTFLKVDYHPNAEKAKRALDGSMRKGRQLRVRFAPNATILRVSNLTPFVS 388
Query: 201 NELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLR 260
NELL +F +FG IERA + VD+RG EGIVEFA+K +A+ LR C E CFFLT SLR
Sbjct: 389 NELLYKSFEIFGPIERASITVDDRGKHMGEGIVEFAKKSSASACLRMCNEKCFFLTASLR 448
Query: 261 PVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHEL-- 318
P +V+P+E+ D+ DGL E+ NKK P+F ++R +GPRFA NSFE EYGSRWKQLH L
Sbjct: 449 PCLVDPMEVNDDTDGLPEKAFNKKMPDFNQERSIGPRFADPNSFEHEYGSRWKQLHNLFK 508
Query: 319 -------------------------YEHETEMLRKELAQREIDRERQKAEWEMKERQAEE 353
YE ETE+LR+EL +RE+D ER+K EWEM+E+QAEE
Sbjct: 509 TKQDALKRELKMEEDKLEAQMEYARYEQETELLRQELRKREVDNERKKLEWEMREKQAEE 568
Query: 354 LKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQ 395
+++R+EE M++H EMQ + +QEED+ RRQ + ++F+ QQ
Sbjct: 569 MRKREEETMRRHQTEMQSHMNRQEEDMLRRQQE-TLFMKAQQ 609
>gi|157978|gb|AAA03214.1| no-on-transient A product form I [Drosophila melanogaster]
Length = 700
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 168/342 (49%), Positives = 232/342 (67%), Gaps = 29/342 (8%)
Query: 81 DRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGET 140
D + T+++ +I GPT +L P E + KF+ RLY+GN+ DIT++++ E+FKPYGE
Sbjct: 270 DFFITQRLRSISGPTFELEPVEVP-TETKFSGRNRLYVGNLTNDITDDELREMFKPYGEI 328
Query: 141 QELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVT 200
E+F N +K F F+++DY NA+KAK LDG + KGR L++RFAP ++V NLT V+
Sbjct: 329 SEIFSNLDKNFTFLKVDYHPNAEKAKRALDGSMRKGRQLRVRFAPNATILRVSNLTPFVS 388
Query: 201 NELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLR 260
NELL +F +FG IERA + VD+RG EGIVEFA+K +A+ LR C E CFFLT SLR
Sbjct: 389 NELLYKSFEIFGPIERASITVDDRGKHMGEGIVEFAKKSSASACLRMCNEKCFFLTASLR 448
Query: 261 PVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHEL-- 318
P +V+P+E+ D+ DGL E+ NKK P+F ++R +GPRFA NSFE EYGSRWKQLH L
Sbjct: 449 PCLVDPMEVNDDTDGLPEKAFNKKMPDFNQERSIGPRFADPNSFEHEYGSRWKQLHNLFK 508
Query: 319 -------------------------YEHETEMLRKELAQREIDRERQKAEWEMKERQAEE 353
YE ETE+LR+EL +RE+D ER+K EWEM+E+QAEE
Sbjct: 509 TKQDALKRELKMEEDKLEAQMEYARYEQETELLRQELRKREVDNERKKLEWEMREKQAEE 568
Query: 354 LKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQ 395
+++R+EE M++H EMQ + +QEED+ RRQ + ++F+ QQ
Sbjct: 569 MRKREEETMRRHQTEMQSHMNRQEEDMLRRQQE-TLFMKAQQ 609
>gi|62473776|ref|NP_001014747.1| no on or off transient A, isoform C [Drosophila melanogaster]
gi|61677906|gb|AAX52501.1| no on or off transient A, isoform C [Drosophila melanogaster]
Length = 698
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 186/402 (46%), Positives = 253/402 (62%), Gaps = 50/402 (12%)
Query: 42 GRGGGRGGGVGGRGGYRGNRPDGRG-----------SDMNESRMGGGGGG---------- 80
GR G G G GG + + D R MN + MGGGGGG
Sbjct: 210 GRNAGNNQGGGFSGGPQNQQRDNRNRSGPRPGGGAGGAMNSTNMGGGGGGGGGGGPRGGE 269
Query: 81 DRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGET 140
D + T+++ +I GPT +L P E + KF+ RLY+GN+ DIT++++ E+FKPYGE
Sbjct: 270 DFFITQRLRSISGPTFELEPVEVP-TETKFSGRNRLYVGNLTNDITDDELREMFKPYGEI 328
Query: 141 QELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVT 200
E+F N +K F F+++DY NA+KAK LDG + KGR L++RFAP ++V NLT V+
Sbjct: 329 SEIFSNLDKNFTFLKVDYHPNAEKAKRALDGSMRKGRQLRVRFAPNATILRVSNLTPFVS 388
Query: 201 NELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLR 260
NELL +F +FG IERA + VD+RG EGIVEFA+K +A+ LR C E CFFLT SLR
Sbjct: 389 NELLYKSFEIFGPIERASITVDDRGKHMGEGIVEFAKKSSASACLRMCNEKCFFLTASLR 448
Query: 261 PVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHEL-- 318
P +V+P+E+ D+ DGL E+ NKK P+F ++R +GPRFA NSFE EYGSRWKQLH L
Sbjct: 449 PCLVDPMEVNDDTDGLPEKAFNKKMPDFNQERSIGPRFADPNSFEHEYGSRWKQLHNLFK 508
Query: 319 -------------------------YEHETEMLRKELAQREIDRERQKAEWEMKERQAEE 353
YE ETE+LR+EL +RE+D ER+K EWEM+E+QAEE
Sbjct: 509 TKQDALKRELKMEEDKLEAQMEYARYEQETELLRQELRKREVDNERKKLEWEMREKQAEE 568
Query: 354 LKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQ 395
+++R+EE M++H EMQ + +QEED+ RRQ + ++F+ QQ
Sbjct: 569 MRKREEETMRRHQTEMQSHMNRQEEDMLRRQQE-TLFMKAQQ 609
>gi|157979|gb|AAA03215.1| no-on-transient A product form II [Drosophila melanogaster]
Length = 698
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 186/402 (46%), Positives = 253/402 (62%), Gaps = 50/402 (12%)
Query: 42 GRGGGRGGGVGGRGGYRGNRPDGRG-----------SDMNESRMGGGGGG---------- 80
GR G G G GG + + D R MN + MGGGGGG
Sbjct: 210 GRNAGNNQGGGFSGGPQNQQRDNRNRSGPRPGGGAGGAMNSTNMGGGGGGGGGGGPRGGE 269
Query: 81 DRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGET 140
D + T+++ +I GPT +L P E + KF+ RLY+GN+ DIT++++ E+FKPYGE
Sbjct: 270 DFFITQRLRSISGPTFELEPVEVP-TETKFSGRNRLYVGNLTNDITDDELREMFKPYGEI 328
Query: 141 QELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVT 200
E+F N +K F F+++DY NA+KAK LDG + KGR L++RFAP ++V NLT V+
Sbjct: 329 SEIFSNLDKNFTFLKVDYHPNAEKAKRALDGSMRKGRQLRVRFAPNATILRVSNLTPFVS 388
Query: 201 NELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLR 260
NELL +F +FG IERA + VD+RG EGIVEFA+K +A+ LR C E CFFLT SLR
Sbjct: 389 NELLYKSFEIFGPIERASITVDDRGKHMGEGIVEFAKKSSASACLRMCNEKCFFLTASLR 448
Query: 261 PVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHEL-- 318
P +V+P+E+ D+ DGL E+ NKK P+F ++R +GPRFA NSFE EYGSRWKQLH L
Sbjct: 449 PCLVDPMEVNDDTDGLPEKAFNKKMPDFNQERSIGPRFADPNSFEHEYGSRWKQLHNLFK 508
Query: 319 -------------------------YEHETEMLRKELAQREIDRERQKAEWEMKERQAEE 353
YE ETE+LR+EL +RE+D ER+K EWEM+E+QAEE
Sbjct: 509 TKQDALKRELKMEEDKLEAQMEYARYEQETELLRQELRKREVDNERKKLEWEMREKQAEE 568
Query: 354 LKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQ 395
+++R+EE M++H EMQ + +QEED+ RRQ + ++F+ QQ
Sbjct: 569 MRKREEETMRRHQTEMQSHMNRQEEDMLRRQQE-TLFMKAQQ 609
>gi|24642480|ref|NP_727962.1| no on or off transient A, isoform B [Drosophila melanogaster]
gi|22832361|gb|AAN09398.1| no on or off transient A, isoform B [Drosophila melanogaster]
Length = 742
Score = 345 bits (885), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 186/402 (46%), Positives = 253/402 (62%), Gaps = 50/402 (12%)
Query: 42 GRGGGRGGGVGGRGGYRGNRPDGRG-----------SDMNESRMGGGGGG---------- 80
GR G G G GG + + D R MN + MGGGGGG
Sbjct: 210 GRNAGNNQGGGFSGGPQNQQRDNRNRSGPRPGGGAGGAMNSTNMGGGGGGGGGGGPRGGE 269
Query: 81 DRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGET 140
D + T+++ +I GPT +L P E + KF+ RLY+GN+ DIT++++ E+FKPYGE
Sbjct: 270 DFFITQRLRSISGPTFELEPVEVP-TETKFSGRNRLYVGNLTNDITDDELREMFKPYGEI 328
Query: 141 QELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVT 200
E+F N +K F F+++DY NA+KAK LDG + KGR L++RFAP ++V NLT V+
Sbjct: 329 SEIFSNLDKNFTFLKVDYHPNAEKAKRALDGSMRKGRQLRVRFAPNATILRVSNLTPFVS 388
Query: 201 NELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLR 260
NELL +F +FG IERA + VD+RG EGIVEFA+K +A+ LR C E CFFLT SLR
Sbjct: 389 NELLYKSFEIFGPIERASITVDDRGKHMGEGIVEFAKKSSASACLRMCNEKCFFLTASLR 448
Query: 261 PVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHEL-- 318
P +V+P+E+ D+ DGL E+ NKK P+F ++R +GPRFA NSFE EYGSRWKQLH L
Sbjct: 449 PCLVDPMEVNDDTDGLPEKAFNKKMPDFNQERSIGPRFADPNSFEHEYGSRWKQLHNLFK 508
Query: 319 -------------------------YEHETEMLRKELAQREIDRERQKAEWEMKERQAEE 353
YE ETE+LR+EL +RE+D ER+K EWEM+E+QAEE
Sbjct: 509 TKQDALKRELKMEEDKLEAQMEYARYEQETELLRQELRKREVDNERKKLEWEMREKQAEE 568
Query: 354 LKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQ 395
+++R+EE M++H EMQ + +QEED+ RRQ + ++F+ QQ
Sbjct: 569 MRKREEETMRRHQTEMQSHMNRQEEDMLRRQQE-TLFMKAQQ 609
>gi|443906773|gb|AGD79327.1| RH34608p1 [Drosophila melanogaster]
Length = 740
Score = 345 bits (884), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 168/342 (49%), Positives = 232/342 (67%), Gaps = 29/342 (8%)
Query: 81 DRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGET 140
D + T+++ +I GPT +L P E + KF+ RLY+GN+ DIT++++ E+FKPYGE
Sbjct: 270 DFFITQRLRSISGPTFELEPVEVPT-ETKFSGRNRLYVGNLTNDITDDELREMFKPYGEI 328
Query: 141 QELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVT 200
E+F N +K F F+++DY NA+KAK LDG + KGR L++RFAP ++V NLT V+
Sbjct: 329 SEIFSNLDKNFTFLKVDYHPNAEKAKRALDGSMRKGRQLRVRFAPNATILRVSNLTPFVS 388
Query: 201 NELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLR 260
NELL +F +FG IERA + VD+RG EGIVEFA+K +A+ LR C E CFFLT SLR
Sbjct: 389 NELLYKSFEIFGPIERASITVDDRGKHMGEGIVEFAKKSSASACLRMCNEKCFFLTASLR 448
Query: 261 PVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHEL-- 318
P +V+P+E+ D+ DGLSE+ NKK P+F ++R +GPRFA NSFE EY SRWKQLH L
Sbjct: 449 PCLVDPMEVNDDTDGLSEKAFNKKMPDFNQERSIGPRFADPNSFEHEYRSRWKQLHNLFK 508
Query: 319 -------------------------YEHETEMLRKELAQREIDRERQKAEWEMKERQAEE 353
YE ETE+LR+EL +RE+D ER+K EWEM+E+QAEE
Sbjct: 509 TKQDALKRELKMEEDKLEAQMEYARYEQETELLRQELRKREVDNERKKLEWEMREKQAEE 568
Query: 354 LKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQ 395
+++R+EE M++H EMQ + +QEED+ RRQ + ++F+ QQ
Sbjct: 569 MRKREEETMRRHQTEMQSHMNRQEEDMLRRQQE-TLFMKAQQ 609
>gi|195500212|ref|XP_002097277.1| GE24585 [Drosophila yakuba]
gi|194183378|gb|EDW96989.1| GE24585 [Drosophila yakuba]
Length = 665
Score = 344 bits (883), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 199/456 (43%), Positives = 279/456 (61%), Gaps = 56/456 (12%)
Query: 56 GYRGNRPDGRGSDMNESRMGGGGGG---DRYFTEKIMAIQGPTLDLPPSEPQNKDIKFAN 112
G RG R G G MN S MGGGG D + +++ ++ GPT +LPP E + KF+
Sbjct: 222 GNRGMRSGGPGG-MNNSLMGGGGQRGGDDFFIAQRLRSLGGPTHELPPIELP-TETKFSG 279
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGH 172
RLY+GN+ DIT++++ E+FKPYGE E+F N EK F F+++DY NA+KAK LDG
Sbjct: 280 RNRLYVGNLTNDITDDELREMFKPYGEIGEIFSNPEKNFTFLKVDYHPNAEKAKRALDGS 339
Query: 173 VLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGI 232
+ KGR L++RFAP ++V NL V+NELL +F VFG IERAI+ VD+RG EGI
Sbjct: 340 MRKGRQLRVRFAPNATILRVSNLNQFVSNELLYQSFEVFGPIERAIISVDDRGKHTGEGI 399
Query: 233 VEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQR 292
VEF++K +A+ LR C E CFFLT SLRP +VEP+E+ D+ DGL E+ +NKK PEF ++R
Sbjct: 400 VEFSKKSSASACLRLCNEKCFFLTASLRPCLVEPMEVNDDNDGLPEKALNKKMPEFSQER 459
Query: 293 QVGPRFATVNSFEFEYGSRWKQLHEL---------------------------YEHETEM 325
+GPRFA +NSFE EYGSRWKQLH+L YE ETE+
Sbjct: 460 SIGPRFADMNSFEHEYGSRWKQLHDLFKSKQDALKRELKMEEDKLEAQMEYARYEQETEL 519
Query: 326 LRKELAQREIDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQN 385
LR+EL +RE+D ER+K EWEM+E+ AEE++ R+EE +++H Q ++ +QEED+R RQ
Sbjct: 520 LRQELRKREVDNERKKLEWEMREKHAEEMRNREEEHLRRH----QSQMLRQEEDMRARQQ 575
Query: 386 DNSMFL--------VEQQQGRGGSGGYGSPGQAYGNAIID-FEALAAAVGNAVVGNVTGV 436
++ + + ++QQ+G GG G + N + FE A N+ + G+
Sbjct: 576 ESELLMQAHKLNMILDQQEGFGGGTNSG-----FDNFVDSPFEVFANNSNNSA---MVGI 627
Query: 437 DNKGSAMDFDQGGRSGGGGGRRNDSA---SSGWSRR 469
++ D G G GG +R +S ++ W RR
Sbjct: 628 NSGPGGPDKLDGFEFGAGGNQRGNSGGGNNAPWGRR 663
>gi|289741681|gb|ADD19588.1| RNA-binding protein p54nrb [Glossina morsitans morsitans]
Length = 602
Score = 344 bits (882), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 173/359 (48%), Positives = 240/359 (66%), Gaps = 34/359 (9%)
Query: 81 DRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGET 140
D + +++ AI GPT +LP E ++ KF+ RLY+GN+ D+TE ++ E+FKP+GE
Sbjct: 185 DFFIGQRLRAISGPTHELPAIE-NTEETKFSGRNRLYVGNLTNDVTEEELREIFKPFGEI 243
Query: 141 QELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVT 200
E+F N +K F F+++DY NA++AK +LDG + KGR L++R+AP ++V NLT V+
Sbjct: 244 GEVFSNPDKNFAFLKLDYHANAERAKRELDGTMRKGRMLRVRYAPNATIVRVSNLTPFVS 303
Query: 201 NELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLR 260
NELL +F VFG +E+A V VD+RG + EGIVEFA+K +A LR C E C+FLT SLR
Sbjct: 304 NELLYKSFEVFGPVEKANVNVDDRGKTTGEGIVEFAKKSSANMCLRFCNEKCYFLTASLR 363
Query: 261 PVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHEL-- 318
P +VEP E D+ DGL E+++NKK PEF ++R VGPRFA + SFE EYG+RWKQLHEL
Sbjct: 364 PCVVEPFEANDDTDGLPEKSLNKKAPEFNQERSVGPRFADLGSFEHEYGTRWKQLHELFK 423
Query: 319 -------------------------YEHETEMLRKELAQREIDRERQKAEWEMKERQAEE 353
YEHETE+LR+EL +RE D ER+K EWEM+E+QAEE
Sbjct: 424 SKQEALKRELKMEEEKLEAQMEYARYEHETELLRQELRKRESDNERKKMEWEMREKQAEE 483
Query: 354 LKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQ------QGRGGSGGYGS 406
+++R+EE M++ EMQ R+ +QEE++RRRQ +N++F+ QQ Q GG G S
Sbjct: 484 MRKREEEQMRRTQNEMQSRMMRQEEEMRRRQQENTLFMQAQQLNSLLDQQEGGFSGNCS 542
>gi|7662|emb|CAA39395.1| Bj6 protein [Drosophila melanogaster]
Length = 700
Score = 343 bits (881), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 167/342 (48%), Positives = 231/342 (67%), Gaps = 29/342 (8%)
Query: 81 DRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGET 140
D + T+++ +I GPT +L P E + KF+ RLY+GN+ DIT++++ E+FKPYGE
Sbjct: 270 DFFITQRLRSISGPTFELEPVEVP-TETKFSGRNRLYVGNLTNDITDDELREMFKPYGEI 328
Query: 141 QELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVT 200
E+F N +K F F+++DY N +KAK LDG + KGR L++RFAP ++V NLT V+
Sbjct: 329 SEIFSNLDKNFTFLKVDYHPNREKAKRALDGSMRKGRQLRVRFAPNATILRVSNLTPFVS 388
Query: 201 NELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLR 260
NELL +F +FG IERA + VD+RG EGIVEFA+K +A+ LR C E CFFLT SLR
Sbjct: 389 NELLYKSFEIFGPIERASITVDDRGKHMGEGIVEFAKKSSASACLRMCNEKCFFLTASLR 448
Query: 261 PVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHEL-- 318
P +V+P+E+ D+ DGL E+ NKK P+F ++R +GPRFA NSFE EYGSRWKQLH L
Sbjct: 449 PCLVDPMEVNDDTDGLPEKAFNKKMPDFNQERSIGPRFADPNSFEHEYGSRWKQLHNLFK 508
Query: 319 -------------------------YEHETEMLRKELAQREIDRERQKAEWEMKERQAEE 353
YE ETE+LR+EL +RE+D ER+K EWEM+E+QAEE
Sbjct: 509 TKQDALKRELKMEEDKLEAQMEYARYEQETELLRQELRKREVDNERKKLEWEMREKQAEE 568
Query: 354 LKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQ 395
+++R+EE M++H EMQ + +QEED+ RRQ + ++F+ QQ
Sbjct: 569 MRKREEETMRRHQTEMQSHMNRQEEDMLRRQQE-TLFMKAQQ 609
>gi|347970652|ref|XP_003436621.1| AGAP003794-PB [Anopheles gambiae str. PEST]
gi|333466771|gb|EGK96375.1| AGAP003794-PB [Anopheles gambiae str. PEST]
Length = 569
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 174/346 (50%), Positives = 227/346 (65%), Gaps = 29/346 (8%)
Query: 76 GGGGGDRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFK 135
GG + EK+ + GP ++PP E Q D+KF+ RLY+GN+ D+TE +++++FK
Sbjct: 126 GGEDFAYFINEKLRQLAGPLFEIPPIEAQ--DVKFSGRNRLYVGNLTNDVTEEELVDMFK 183
Query: 136 PYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNL 195
YGE E+F+NKEK + F+R+DY NA+ AK LDG K R L++RFAP AI+VKNL
Sbjct: 184 VYGEISEVFMNKEKNYAFVRVDYLSNAEAAKRGLDGTTRKNRVLRVRFAPNATAIRVKNL 243
Query: 196 TSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFL 255
T VTNELL AF VFG +ERA+V VDERG EGIVEF KP A A+R C E C+FL
Sbjct: 244 TPYVTNELLYKAFEVFGPLERAVVQVDERGKPTGEGIVEFKNKPGAMAAIRYCTEKCYFL 303
Query: 256 TQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQL 315
T SLRPVIVEP D+ DGL E+++NKK +F K RQ GPRFA SFEFEYG RWK +
Sbjct: 304 TASLRPVIVEPYTYQDDNDGLPEKSLNKKQNDFLKARQQGPRFAEHGSFEFEYGQRWKHM 363
Query: 316 HEL---------------------------YEHETEMLRKELAQREIDRERQKAEWEMKE 348
HEL YE ETE+LR++L QRE+DR+RQKAEWEMKE
Sbjct: 364 HELFKQKAESLKREMIMEEEKLEAQMEYARYEQETELLREQLRQREMDRDRQKAEWEMKE 423
Query: 349 RQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQ 394
RQ +E ++R++ +K EEM R+ + +E+L RRQ +N+MF+ +Q
Sbjct: 424 RQVQEARQRNDIQIKTELEEMTTRIKRSDEELHRRQKENNMFMQQQ 469
>gi|347970654|ref|XP_310351.7| AGAP003794-PA [Anopheles gambiae str. PEST]
gi|333466770|gb|EAA45208.5| AGAP003794-PA [Anopheles gambiae str. PEST]
Length = 595
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 174/346 (50%), Positives = 227/346 (65%), Gaps = 29/346 (8%)
Query: 76 GGGGGDRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFK 135
GG + EK+ + GP ++PP E Q D+KF+ RLY+GN+ D+TE +++++FK
Sbjct: 126 GGEDFAYFINEKLRQLAGPLFEIPPIEAQ--DVKFSGRNRLYVGNLTNDVTEEELVDMFK 183
Query: 136 PYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNL 195
YGE E+F+NKEK + F+R+DY NA+ AK LDG K R L++RFAP AI+VKNL
Sbjct: 184 VYGEISEVFMNKEKNYAFVRVDYLSNAEAAKRGLDGTTRKNRVLRVRFAPNATAIRVKNL 243
Query: 196 TSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFL 255
T VTNELL AF VFG +ERA+V VDERG EGIVEF KP A A+R C E C+FL
Sbjct: 244 TPYVTNELLYKAFEVFGPLERAVVQVDERGKPTGEGIVEFKNKPGAMAAIRYCTEKCYFL 303
Query: 256 TQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQL 315
T SLRPVIVEP D+ DGL E+++NKK +F K RQ GPRFA SFEFEYG RWK +
Sbjct: 304 TASLRPVIVEPYTYQDDNDGLPEKSLNKKQNDFLKARQQGPRFAEHGSFEFEYGQRWKHM 363
Query: 316 HEL---------------------------YEHETEMLRKELAQREIDRERQKAEWEMKE 348
HEL YE ETE+LR++L QRE+DR+RQKAEWEMKE
Sbjct: 364 HELFKQKAESLKREMIMEEEKLEAQMEYARYEQETELLREQLRQREMDRDRQKAEWEMKE 423
Query: 349 RQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQ 394
RQ +E ++R++ +K EEM R+ + +E+L RRQ +N+MF+ +Q
Sbjct: 424 RQVQEARQRNDIQIKTELEEMTTRIKRSDEELHRRQKENNMFMQQQ 469
>gi|195479200|ref|XP_002100802.1| GE17267 [Drosophila yakuba]
gi|194188326|gb|EDX01910.1| GE17267 [Drosophila yakuba]
Length = 699
Score = 340 bits (873), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 183/403 (45%), Positives = 256/403 (63%), Gaps = 40/403 (9%)
Query: 81 DRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGET 140
D + T++ + GPT +L P E + KF+ RLY+GN+ DIT++++ E+FKPYGE
Sbjct: 271 DFFITQRSRGLSGPTFELEPVEVP-TETKFSGRNRLYVGNLTNDITDDELREMFKPYGEI 329
Query: 141 QELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVT 200
E+F N +K F F+++DY NA+KAK LDG + KGR L++RFAP ++V NLT V+
Sbjct: 330 SEIFSNLDKNFTFLKVDYHPNAEKAKRALDGSMRKGRQLRVRFAPNATILRVSNLTPFVS 389
Query: 201 NELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLR 260
NELL +F +FG IERA + VD+RG EGIVEFA+K +A+ LR C E CFFLT SLR
Sbjct: 390 NELLYKSFEIFGPIERASITVDDRGKHMGEGIVEFAKKSSASACLRLCNEKCFFLTASLR 449
Query: 261 PVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHEL-- 318
P +V+P+E+ D+ DGL E+ NKK P+F ++R +GPRFA NSFE EYGSRWKQLH L
Sbjct: 450 PCLVDPMEVNDDTDGLPEKAFNKKMPDFNQERSIGPRFADPNSFEHEYGSRWKQLHNLFK 509
Query: 319 -------------------------YEHETEMLRKELAQREIDRERQKAEWEMKERQAEE 353
YE ETE+LR+EL +RE+D ER+K EWE++E+QAEE
Sbjct: 510 TKQDALKRELKMEEDKLEAQMEYARYEQETELLRQELRKREVDNERKKLEWELREKQAEE 569
Query: 354 LKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMF--------LVEQQQGRGGSGGYG 405
+++R+EE M++H EMQ + +QEED+ RRQ + ++F L++QQ+G GG G
Sbjct: 570 MRKREEETMRRHQTEMQSHMNRQEEDILRRQQE-TLFMKAQQLNSLLDQQEGFGGGGNNS 628
Query: 406 SPGQAYGNAIIDFEALAAAVGN--AVVGNVTGVDNKGS-AMDF 445
S GN+ FE N ++GN +G + + S A +F
Sbjct: 629 SFDNFGGNSNSPFEVFRGNNNNNSTMIGNNSGPNTQDSFAFEF 671
>gi|357618963|gb|EHJ71747.1| splicing factor proline- and glutamine-rich [Danaus plexippus]
Length = 627
Score = 335 bits (858), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 175/369 (47%), Positives = 233/369 (63%), Gaps = 43/369 (11%)
Query: 53 GRGGYRGNRPDGRGSDMNESRMGGGGGGDRYFTEKIMAIQGPTLDLPPSEPQNKDIKFAN 112
GRG G +P R M K+ + GP D+PP E ++KF
Sbjct: 215 GRGPQDGGKPQQREEQM--------------LANKLKDLMGPLNDIPPIE--QPEVKFNG 258
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGH 172
RLY+GN+ D+T+ +I+ +F +GET ELF+NKEK FGFI+MDY+ NA+KAK ++DG
Sbjct: 259 RSRLYIGNLTNDVTDEEILTMFGQFGETAELFLNKEKNFGFIKMDYRVNAEKAKREIDGR 318
Query: 173 VLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGI 232
+ GR++++RFAP N+A++VKNL V+NELL AF +FG IERA V VD+RG + EGI
Sbjct: 319 MRNGRNIRVRFAPHNSAVRVKNLPPFVSNELLYKAFEIFGKIERAYVKVDDRGKTLGEGI 378
Query: 233 VEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQR 292
VEFARKP+A A+R C E CFFLT SLRPVIVE LE DE DG E+ + KK PEF + R
Sbjct: 379 VEFARKPSALGAIRNCTERCFFLTSSLRPVIVESLEEPDEFDGYPEKNLPKKHPEFLRAR 438
Query: 293 QVGPRFATVNSFEFEYGSRWKQLHEL---------------------------YEHETEM 325
++GPRF+ SFE EYG+RWKQLHEL YEHETE+
Sbjct: 439 EMGPRFSEPGSFEHEYGTRWKQLHELHRQKEEALKKELAAEEEKLEAQMEYAKYEHETEL 498
Query: 326 LRKELAQREIDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQN 385
LR++L QRE DRERQK WEM ER A+E + + + + EE+ R+ Q+++LRRRQ
Sbjct: 499 LREQLRQREQDRERQKRSWEMAERAADERREAERAQLLRQEEELSNRMRLQDDELRRRQQ 558
Query: 386 DNSMFLVEQ 394
+N++F+ Q
Sbjct: 559 ENTLFVQAQ 567
>gi|170040401|ref|XP_001847989.1| hrp65-1 [Culex quinquefasciatus]
gi|167863947|gb|EDS27330.1| hrp65-1 [Culex quinquefasciatus]
Length = 525
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 187/376 (49%), Positives = 238/376 (63%), Gaps = 33/376 (8%)
Query: 49 GGVGGRGGYRGNRPDGRGSDMNESRMGGGGGGDRYFT-EKIMAIQGPTLDLPPSEPQNKD 107
GG RGG R DG G + R ++YF EK+ +QGP LDLP E ++
Sbjct: 125 GGPKNRGGPRNQGGDGEGGGGFDRR---RANNEQYFIGEKLRLLQGPLLDLPAIE-STEE 180
Query: 108 IKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKA 167
+KF+ RLY+GN+ D+TE +++ELF PYGE E+F+NKEK++ F+R+D+ NA+KAK
Sbjct: 181 VKFSGRNRLYIGNLTADVTEEELVELFMPYGEITEIFMNKEKLYAFVRVDFFSNAEKAKR 240
Query: 168 KLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNS 227
+LDG K R L++RFAP AIKVKNLT V+NELL AF VFG +ERA+V VDERG S
Sbjct: 241 ELDGTSRKNRILRVRFAPNATAIKVKNLTQDVSNELLYKAFEVFGPLERAVVQVDERGKS 300
Query: 228 KCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTD-EIDGLSERTINKKTP 286
EGIVE+ KP+A A R C+E C+FL SLRP IVEP D DGL E+++NKK P
Sbjct: 301 TGEGIVEYKNKPSAMAAQRYCSERCYFLNSSLRPCIVEPYMYQDNNADGLPEKSLNKKIP 360
Query: 287 EFYKQRQVGPRFATVNSFEFEYGSRWKQLHEL---------------------------Y 319
EF K RQ GP FA SFE EYG RWKQ+H+L Y
Sbjct: 361 EFMKLRQQGPHFADQGSFEHEYGQRWKQMHDLFKQKSDALKREMEMEEEKLEAQMEYARY 420
Query: 320 EHETEMLRKELAQREIDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEED 379
EHETE LR++L RE D +RQKAEWEMKER A E K+R+E MK EEMQ + + +E+
Sbjct: 421 EHETEQLREQLRMREQDSDRQKAEWEMKERMAVENKQRNEIQMKHKVEEMQNLIKRTDEE 480
Query: 380 LRRRQNDNSMFLVEQQ 395
L RRQ +N++F+ QQ
Sbjct: 481 LHRRQLENNVFMQNQQ 496
>gi|34922660|sp|Q9U1N0.1|HRP65_CHITE RecName: Full=Hrp65 protein; AltName: Full=Ct-Hrp65
gi|6687398|emb|CAB64926.1| Hrp65 protein [Chironomus tentans]
gi|14572591|emb|CAC42829.1| hrp65-1 isoform [Chironomus tentans]
Length = 535
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 161/336 (47%), Positives = 230/336 (68%), Gaps = 29/336 (8%)
Query: 87 KIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN 146
K+ + GPT DLP E ++IKF+ RLY+GN+ D+TE ++ ELF PYGE E FIN
Sbjct: 88 KLKNLAGPTHDLP--ELVCEEIKFSGRNRLYIGNLTSDVTEEELKELFSPYGEISEAFIN 145
Query: 147 KEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLEL 206
EK F F+++DY+ NA++AK LDG + K + ++IRFAP I+VKNLT V+NELL
Sbjct: 146 AEKNFAFLKIDYRANAERAKKDLDGRMRKNKPIRIRFAPNATTIRVKNLTPFVSNELLFK 205
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEP 266
+F VFG +ERA++IVD+RG + EGIVEFARK A AL+ C+E C+FLT SLRP +VE
Sbjct: 206 SFEVFGQVERAVIIVDDRGKTTGEGIVEFARKSGAMSALKYCSEKCYFLTSSLRPCVVET 265
Query: 267 LELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELY------- 319
+ DE DG E+++ +K+ ++YK RQ GPRFA + SFE E+G++WKQ++++Y
Sbjct: 266 FDHIDETDGFPEKSLMRKSNDYYKARQNGPRFAEMGSFEHEFGTKWKQMYDMYKQKHDAL 325
Query: 320 --------------------EHETEMLRKELAQREIDRERQKAEWEMKERQAEELKRRDE 359
EHETE LR++L +RE DR+RQK EWE +ERQA+E + RDE
Sbjct: 326 KREMQLEEEKLEAQMEYAKFEHETESLREQLRKREQDRDRQKKEWEDRERQADESRIRDE 385
Query: 360 ELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQ 395
+ M++ ++MQ+R+ +Q+E++RRRQ +NS+F+ QQ
Sbjct: 386 QQMRRQQDDMQMRMQRQDEEMRRRQQENSLFMQAQQ 421
>gi|14572590|emb|CAC42828.1| hrp65-2 isoform [Chironomus tentans]
Length = 517
Score = 329 bits (843), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 161/336 (47%), Positives = 230/336 (68%), Gaps = 29/336 (8%)
Query: 87 KIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN 146
K+ + GPT DLP E ++IKF+ RLY+GN+ D+TE ++ ELF PYGE E FIN
Sbjct: 88 KLKNLAGPTHDLP--ELVCEEIKFSGRNRLYIGNLTSDVTEEELKELFSPYGEISEAFIN 145
Query: 147 KEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLEL 206
EK F F+++DY+ NA++AK LDG + K + ++IRFAP I+VKNLT V+NELL
Sbjct: 146 AEKNFAFLKIDYRANAERAKKDLDGRMRKNKPIRIRFAPNATTIRVKNLTPFVSNELLFK 205
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEP 266
+F VFG +ERA++IVD+RG + EGIVEFARK A AL+ C+E C+FLT SLRP +VE
Sbjct: 206 SFEVFGQVERAVIIVDDRGKTTGEGIVEFARKSGAMSALKYCSEKCYFLTSSLRPCVVET 265
Query: 267 LELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELY------- 319
+ DE DG E+++ +K+ ++YK RQ GPRFA + SFE E+G++WKQ++++Y
Sbjct: 266 FDHIDETDGFPEKSLMRKSNDYYKARQNGPRFAEMGSFEHEFGTKWKQMYDMYKQKHDAL 325
Query: 320 --------------------EHETEMLRKELAQREIDRERQKAEWEMKERQAEELKRRDE 359
EHETE LR++L +RE DR+RQK EWE +ERQA+E + RDE
Sbjct: 326 KREMQLEEEKLEAQMEYAKFEHETESLREQLRKREQDRDRQKKEWEDRERQADESRIRDE 385
Query: 360 ELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQ 395
+ M++ ++MQ+R+ +Q+E++RRRQ +NS+F+ QQ
Sbjct: 386 QQMRRQQDDMQMRMQRQDEEMRRRQQENSLFMQAQQ 421
>gi|14572592|emb|CAC42830.1| hrp65-3 isoform [Chironomus tentans]
Length = 512
Score = 328 bits (841), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 161/336 (47%), Positives = 230/336 (68%), Gaps = 29/336 (8%)
Query: 87 KIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN 146
K+ + GPT DLP E ++IKF+ RLY+GN+ D+TE ++ ELF PYGE E FIN
Sbjct: 88 KLKNLAGPTHDLP--ELVCEEIKFSGRNRLYIGNLTSDVTEEELKELFSPYGEISEAFIN 145
Query: 147 KEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLEL 206
EK F F+++DY+ NA++AK LDG + K + ++IRFAP I+VKNLT V+NELL
Sbjct: 146 AEKNFAFLKIDYRANAERAKKDLDGRMRKNKPIRIRFAPNATTIRVKNLTPFVSNELLFK 205
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEP 266
+F VFG +ERA++IVD+RG + EGIVEFARK A AL+ C+E C+FLT SLRP +VE
Sbjct: 206 SFEVFGQVERAVIIVDDRGKTTGEGIVEFARKSGAMSALKYCSEKCYFLTSSLRPCVVET 265
Query: 267 LELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELY------- 319
+ DE DG E+++ +K+ ++YK RQ GPRFA + SFE E+G++WKQ++++Y
Sbjct: 266 FDHIDETDGFPEKSLMRKSNDYYKARQNGPRFAEMGSFEHEFGTKWKQMYDMYKQKHDAL 325
Query: 320 --------------------EHETEMLRKELAQREIDRERQKAEWEMKERQAEELKRRDE 359
EHETE LR++L +RE DR+RQK EWE +ERQA+E + RDE
Sbjct: 326 KREMQLEEEKLEAQMEYAKFEHETESLREQLRKREQDRDRQKKEWEDRERQADESRIRDE 385
Query: 360 ELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQ 395
+ M++ ++MQ+R+ +Q+E++RRRQ +NS+F+ QQ
Sbjct: 386 QQMRRQQDDMQMRMQRQDEEMRRRQQENSLFMQAQQ 421
>gi|312376128|gb|EFR23311.1| hypothetical protein AND_13120 [Anopheles darlingi]
Length = 655
Score = 326 bits (836), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 176/378 (46%), Positives = 234/378 (61%), Gaps = 63/378 (16%)
Query: 75 GGG------------------GGGDR----------------YFTEKIMAIQGPTLDLPP 100
GGG GG D+ + EK+ +QGP LD+P
Sbjct: 123 GGGDDSGPNPHMNRGMHRGNRGGNDQDNSFADRRRGGGGDGYFINEKLRLLQGPLLDIPA 182
Query: 101 SEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKH 160
E Q + KF+ RLY+GN+ D TE +++E+FKP+GE E+F+NKEK + F+R+DY
Sbjct: 183 IEAQ--EAKFSGRNRLYVGNLTNDATEEELMEMFKPFGEISEVFMNKEKNYAFVRVDYFC 240
Query: 161 NADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVI 220
NA+KAK +LDG K R L++RFAP AI+VKNLT+ VTNELL AF VFG +ERA+V
Sbjct: 241 NAEKAKRELDGTSRKNRVLRVRFAPNATAIRVKNLTAYVTNELLYKAFEVFGPLERAVVQ 300
Query: 221 VDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERT 280
VDERG EGIVE+ +KP AA A+R C+E C+FLT SLRPVIVEP D+ DGL E++
Sbjct: 301 VDERGKPTGEGIVEYQKKPGAAAAIRYCSEKCYFLTSSLRPVIVEPYTYQDDNDGLPEKS 360
Query: 281 INKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHEL---------------------- 318
+NKK EF K RQ+GPRFA SFE+EYG RWK +H++
Sbjct: 361 LNKKQNEFIKARQLGPRFAENGSFEYEYGQRWKHMHDMYRQKAEALKREMIMEEEQLEAK 420
Query: 319 -----YEHETEMLRKELAQREIDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQLRL 373
YEHETE LR++L QRE+DR+RQKAE EMKERQ ++R++ +K +EM R+
Sbjct: 421 MEFARYEHETEQLREQLRQREMDRDRQKAELEMKERQVHVARQRNDMQVKTEMDEMTNRI 480
Query: 374 AQQEEDLRRRQNDNSMFL 391
+ +E+L RRQ +N+MF+
Sbjct: 481 KRSDEELDRRQKENNMFM 498
>gi|91088465|ref|XP_969645.1| PREDICTED: similar to splicing factor proline- and glutamine-rich
[Tribolium castaneum]
gi|270012217|gb|EFA08665.1| hypothetical protein TcasGA2_TC006331 [Tribolium castaneum]
Length = 454
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 172/338 (50%), Positives = 231/338 (68%), Gaps = 29/338 (8%)
Query: 85 TEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELF 144
EK+ I GPT+DLPP E K KF+ RLY+GN+G ++TE+D+ ELF YGE ELF
Sbjct: 65 AEKLAQIAGPTVDLPPVETSEK--KFSGRNRLYIGNLGPEVTEDDLKELFGKYGEFGELF 122
Query: 145 INKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELL 204
+NKEK F F++ D+ N +KAK +LDG VLKG++LKIRFAP +AA++VKNL V+NELL
Sbjct: 123 LNKEKFFAFVKYDFYANCEKAKNELDGEVLKGKTLKIRFAPNSAAVRVKNLAPFVSNELL 182
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264
AF VFG++ERA+V+VDERG EG+VEF RK A A+R+C E CFF+T+SLRPV+V
Sbjct: 183 YYAFQVFGEVERALVLVDERGKPTGEGVVEFGRKGFALNAIRKCTERCFFITESLRPVVV 242
Query: 265 EPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHEL------ 318
EP E T++ DGL E+ + ++ P+F K R GPR + N+FE EYG RWKQL +L
Sbjct: 243 EPHESTNDTDGLPEKFLPRRNPDFLKARSKGPRLSEPNTFEHEYGLRWKQLLDLYAKKEA 302
Query: 319 ---------------------YEHETEMLRKELAQREIDRERQKAEWEMKERQAEELKRR 357
YEHETE+LR+EL RE+DR+RQK EWEMK+RQ EE +RR
Sbjct: 303 ALKKDLQMDMEKLEAQMEYARYEHETELLREELRAREMDRDRQKQEWEMKQRQMEEERRR 362
Query: 358 DEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQ 395
EE +++ E +Q L Q+E+++RRQ +N++F+ Q
Sbjct: 363 SEEQIRRQQESLQAILLHQDEEMKRRQQENNLFMQAHQ 400
>gi|340708698|ref|XP_003392959.1| PREDICTED: hrp65 protein-like [Bombus terrestris]
Length = 508
Score = 311 bits (797), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 174/347 (50%), Positives = 235/347 (67%), Gaps = 41/347 (11%)
Query: 77 GGGGDRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKP 136
G DR E+IM+I GPT DLPP E K KF+ RLY+GN+ D+TE +I ++F+
Sbjct: 61 SDGPDR-IMERIMSISGPTHDLPPQETIEK--KFSGRNRLYIGNLTNDVTEEEIQQMFQQ 117
Query: 137 YGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLT 196
YGET ELF+NKEK F F++MDY+ NA+KAK +LD ++KGR+LK+RFAP+++ IKVKNLT
Sbjct: 118 YGETSELFLNKEKNFSFVKMDYRVNAEKAKHELDRKMVKGRALKVRFAPLDSTIKVKNLT 177
Query: 197 SCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLT 256
++NELLE AF VFG+IERAIVIVD++G S EGI+EF +K +A ALR+C EGC+ LT
Sbjct: 178 PWISNELLEKAFSVFGEIERAIVIVDKKGKSSGEGIIEFCKKNSAQLALRKCTEGCYRLT 237
Query: 257 QSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLH 316
S PVIVE E D+IDG ++++ +T EF+K R++GPRFA V SFE+EYG+RWKQL+
Sbjct: 238 ASPLPVIVELFEQQDDIDGYPDKSL-PRTTEFFKAREIGPRFAEVGSFEYEYGTRWKQLY 296
Query: 317 ELYEHETEMLRKELAQREIDRE--------------------------------RQKAEW 344
EL + + E + +E+A E RQK EW
Sbjct: 297 ELRKQKIEAIEREMAI-----EEEKLEAQMEFERCEFETKRLREELRMREADRERQKREW 351
Query: 345 EMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFL 391
EMKERQAEE + R+EEL ++ EEM + + +QEE+L RRQ +N++FL
Sbjct: 352 EMKERQAEEQRTREEELRRRQQEEMAMAIRRQEEELHRRQQENNLFL 398
>gi|195387295|ref|XP_002052331.1| GJ17496 [Drosophila virilis]
gi|194148788|gb|EDW64486.1| GJ17496 [Drosophila virilis]
Length = 550
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 150/364 (41%), Positives = 231/364 (63%), Gaps = 32/364 (8%)
Query: 80 GDRYF-TEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITEND-IIELFKPY 137
D YF +++ ++ GPT+DL P + + +++KF+ RLY+GN+ D+ ++ + ELFKP+
Sbjct: 160 SDEYFIAQRLRSLNGPTIDLAPIDVKEEELKFSGRNRLYVGNLTNDLQRDEGLRELFKPF 219
Query: 138 GETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTS 197
GE ++F+ +K F F+++DY NA+KAK LDG + GR L++RFAP A++V NL+
Sbjct: 220 GELDDIFMGPDKKFAFVKVDYHVNAEKAKRALDGAQVNGRHLRVRFAPSATALRVTNLSP 279
Query: 198 CVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQ 257
V+NELL +AF VFG IERA++IVD+RGN EG+VEF ++ +A LR C + CFFLT
Sbjct: 280 YVSNELLHMAFEVFGPIERAVIIVDDRGNHTGEGVVEFVKRSSAHICLRMCHDRCFFLTA 339
Query: 258 SLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHE 317
SLRP +VEP E+T+E GL E+ +NK + +F R +GPRFA +SF+ EYG+RWK+L+
Sbjct: 340 SLRPCVVEPKEMTEE--GLPEKALNKNS-QFNNARSIGPRFADPDSFDHEYGTRWKELYA 396
Query: 318 L---------------------------YEHETEMLRKELAQREIDRERQKAEWEMKERQ 350
L YE ET++LR+EL +RE D ER + EWEM+++Q
Sbjct: 397 LYSAKCSSLKREMKLEEEKLEAQLEFIRYERETQLLRQELRKREADNERLRLEWEMRQKQ 456
Query: 351 AEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQQGRGGSGGYGSPGQA 410
+ E+ +++ + + MQ L + E +RRRQ D S+++ EQ G G +GS +
Sbjct: 457 SLEMSLLEDDALLRRQNGMQNLLMRHEGPVRRRQQDRSLYMPEQPSGFVGGCEFGSRNLS 516
Query: 411 YGNA 414
+ ++
Sbjct: 517 FDSS 520
>gi|170040406|ref|XP_001847991.1| splicing factor [Culex quinquefasciatus]
gi|167863949|gb|EDS27332.1| splicing factor [Culex quinquefasciatus]
Length = 619
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 157/310 (50%), Positives = 194/310 (62%), Gaps = 31/310 (10%)
Query: 77 GGGGDRYFT-EKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFK 135
G G+ YF EK+ +QG LD+PP + D KF+ RLY+GN+ D+TE +++ELF
Sbjct: 135 SGPGEMYFIGEKLRMLQGQLLDIPPID--ETDAKFSGRNRLYVGNLTPDVTEEELVELFL 192
Query: 136 PYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNL 195
PYGE E+F+N EK + F+R+D+ NA+KAK +LDG K R LKIRFAP A++V NL
Sbjct: 193 PYGEITEVFMNMEKNYAFVRVDFFSNAEKAKRELDGTSRKNRILKIRFAPNATALRVSNL 252
Query: 196 TSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFL 255
VTNELL AF VFG +E A V VDERG S EGIVE+ KP+A+ AL+ C+E CFFL
Sbjct: 253 GPFVTNELLYRAFEVFGPVESAKVQVDERGKSTGEGIVEYKNKPSASAALKHCSEKCFFL 312
Query: 256 TQSLRPVIVEPLELTD-EIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQ 314
SLRP VEP D DGLSE+ INKK PEF K RQ GPRFA SFE EYG RWK
Sbjct: 313 DSSLRPCFVEPYTYQDNNSDGLSEKLINKKIPEFLKSRQQGPRFADQGSFEHEYGQRWKH 372
Query: 315 LHELY---------------------------EHETEMLRKELAQREIDRERQKAEWEMK 347
+HE+Y EHE E LR++L RE D++R+KAEWEMK
Sbjct: 373 MHEMYKQKVEALKRDMVMEEEKLEAQMEFARHEHEIEQLREQLRMREQDKDRKKAEWEMK 432
Query: 348 ERQAEELKRR 357
ER E + R
Sbjct: 433 ERFVNESRER 442
>gi|170040403|ref|XP_001847990.1| NONA protein [Culex quinquefasciatus]
gi|167863948|gb|EDS27331.1| NONA protein [Culex quinquefasciatus]
Length = 511
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 157/310 (50%), Positives = 194/310 (62%), Gaps = 31/310 (10%)
Query: 77 GGGGDRYFT-EKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFK 135
G G+ YF EK+ +QG LD+PP + D KF+ RLY+GN+ D+TE +++ELF
Sbjct: 16 SGPGEMYFIGEKLRMLQGQLLDIPPID--ETDAKFSGRNRLYVGNLTPDVTEEELVELFL 73
Query: 136 PYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNL 195
PYGE E+F+N EK + F+R+D+ NA+KAK +LDG K R LKIRFAP A++V NL
Sbjct: 74 PYGEITEVFMNMEKNYAFVRVDFFSNAEKAKRELDGTSRKNRILKIRFAPNATALRVSNL 133
Query: 196 TSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFL 255
VTNELL AF VFG +E A V VDERG S EGIVE+ KP+A+ AL+ C+E CFFL
Sbjct: 134 GPFVTNELLYRAFEVFGPVESAKVQVDERGKSTGEGIVEYKNKPSASAALKHCSEKCFFL 193
Query: 256 TQSLRPVIVEPLELTD-EIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQ 314
SLRP VEP D DGLSE+ INKK PEF K RQ GPRFA SFE EYG RWK
Sbjct: 194 DSSLRPCFVEPYTYQDNNSDGLSEKLINKKIPEFLKSRQQGPRFADQGSFEHEYGQRWKH 253
Query: 315 LHELY---------------------------EHETEMLRKELAQREIDRERQKAEWEMK 347
+HE+Y EHE E LR++L RE D++R+KAEWEMK
Sbjct: 254 MHEMYKQKVEALKRDMVMEEEKLEAQMEFARHEHEIEQLREQLRMREQDKDRKKAEWEMK 313
Query: 348 ERQAEELKRR 357
ER E + R
Sbjct: 314 ERFVNESRER 323
>gi|195351424|ref|XP_002042234.1| GM13430 [Drosophila sechellia]
gi|194124077|gb|EDW46120.1| GM13430 [Drosophila sechellia]
Length = 664
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 148/318 (46%), Positives = 205/318 (64%), Gaps = 42/318 (13%)
Query: 107 DIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFI--RMDYKHNADK 164
+ KF+ RLY+GN+ DIT++++ E+FKPYGE E+F N+ K F F R+ ++ ++
Sbjct: 270 ETKFSGRNRLYVGNLTNDITDDELREMFKPYGEISEIFSNRNKNFAFPKGRLSFQC-RER 328
Query: 165 AKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDER 224
A DG + KGR L++RFAP NA I LL +F ++G IERA + VD+R
Sbjct: 329 LNAPFDGSMRKGRQLRVRFAP-NATIL----------RLLYKSFEIYGPIERASITVDDR 377
Query: 225 GNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKK 284
G EGIVEFA+K +A+ LR C E CFFLT SLRP +V+P+E+ D+ DGL E+ NKK
Sbjct: 378 GKHMGEGIVEFAKKSSASACLRMCNEKCFFLTASLRPCLVDPMEVNDDTDGLPEKAFNKK 437
Query: 285 TPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHEL-------------------------- 318
P+F ++R +GPRFA NSFE EYGSRWKQLH L
Sbjct: 438 MPDFNQERSIGPRFADPNSFEHEYGSRWKQLHNLFKTKQDALKRELKMEEDKLEAQMEYA 497
Query: 319 -YEHETEMLRKELAQREIDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQE 377
YE ETE+LR+EL +RE+D ER+K EWEM+E+QAEE+++R+EE M++H EMQ + +QE
Sbjct: 498 RYEQETELLRQELRKREVDNERKKLEWEMREKQAEEMRKREEETMRRHQTEMQSHMNRQE 557
Query: 378 EDLRRRQNDNSMFLVEQQ 395
ED+ RRQ + ++F+ QQ
Sbjct: 558 EDMLRRQQE-TLFMKAQQ 574
>gi|195115074|ref|XP_002002092.1| GI14155 [Drosophila mojavensis]
gi|193912667|gb|EDW11534.1| GI14155 [Drosophila mojavensis]
Length = 562
Score = 265 bits (676), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 169/419 (40%), Positives = 241/419 (57%), Gaps = 52/419 (12%)
Query: 84 FTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDI-TENDIIELFKPYGETQE 142
+++ + GPTLDL + ++IKF+ RLY+GN+ G++ +E + ELF+PYG+ +
Sbjct: 163 IAQRLRNMSGPTLDLDQVD-DGEEIKFSGRNRLYVGNLAGELQSEKGLRELFEPYGKLGD 221
Query: 143 LFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNE 202
++I +K F F++++Y NA+KAK LDG GR L++RFA N AI+V NLT V+NE
Sbjct: 222 IYIGPDKKFAFVKVEYHANAEKAKRALDGTTAAGRVLRVRFAG-NTAIRVSNLTPFVSNE 280
Query: 203 LLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPV 262
LL AF VFG +ERA + VD+RGN EG VEF++K +A LR C E CFFLT +LRP
Sbjct: 281 LLYKAFEVFGPVERATITVDDRGNHMGEGTVEFSKKSSANICLRMCQEKCFFLTAALRPC 340
Query: 263 IVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHEL---- 318
IVEP E+ DE DG E++++ KT +F K+R GPRFA NSF+ EYGSRWKQLH++
Sbjct: 341 IVEPKEIIDE-DGFPEKSMS-KTSQFNKERSFGPRFADPNSFDHEYGSRWKQLHQMYKLK 398
Query: 319 -----------------------YEHETEMLRKELAQREIDRERQKAEWEMKERQAEELK 355
YE ET++LR+EL +RE D+ER K EWEM+++Q E
Sbjct: 399 SAALKREMKLEEEKLEEQIELIRYERETQLLRQELQKREADKERLKMEWEMRQKQLMEKD 458
Query: 356 RRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQQGRGGSGGYGSPGQAYGNAI 415
+EE + + QLR QE LRRR + ++ Q G G G Y N
Sbjct: 459 LFEEERL----QSFQLR---QEVPLRRRPLERPVYRSNQPMGFIG-------GCDYANRD 504
Query: 416 IDFEALAAAV-GNAVVGN---VTGVDNKGS-AMDFDQGGRSGGGGGRRNDSASSGWSRR 469
++ E+ V G+A N G++ G+ +FD+ + G N + + W RR
Sbjct: 505 VEMESKPFVVFGDAPNNNDIGTAGINQTGNFGNNFDEKNLNMIEGN-ENINDNPPWCRR 562
>gi|195429948|ref|XP_002063019.1| GK21698 [Drosophila willistoni]
gi|194159104|gb|EDW74005.1| GK21698 [Drosophila willistoni]
Length = 558
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 140/312 (44%), Positives = 187/312 (59%), Gaps = 30/312 (9%)
Query: 75 GGGGGGDRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELF 134
G G + F +K+ + PTLDL P E Q IKF+ RLY+GN+G + E+D+ ELF
Sbjct: 84 GQKNDGPQNFGQKLRQLSEPTLDLEPIEDQ--IIKFSGRSRLYIGNLGANTKESDLRELF 141
Query: 135 KPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKN 194
KP+GE ++F N K F F+R+D NA KAK LDG + GR L++ FAP ++++V N
Sbjct: 142 KPFGEIDDIFSNPRKNFTFLRVDLYDNAVKAKLALDGSMYDGRQLRVSFAPKASSVRVSN 201
Query: 195 LTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFF 254
L V+NELL +F +FG IERA + VD+RG S EG V+F + A LR C E CFF
Sbjct: 202 LNGFVSNELLYKSFEIFGPIERATIKVDDRGKSLGEGYVDFVKNSTAKMCLRMCQEKCFF 261
Query: 255 LTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQ 314
LT SLRP +VEP EL D I GL E ++NK+ P+F +R VGPRFA N+FE +YG +WK
Sbjct: 262 LTASLRPCVVEPKELIDTIGGLPENSLNKRMPDFIAERSVGPRFAEFNTFEHDYGGKWKI 321
Query: 315 LHELY---------------------------EHETEMLRKELAQREIDRERQKAEWEMK 347
LH + E ET LR+EL QRE+ +ERQ+ WEM
Sbjct: 322 LHNEFKMKQEELKRELRKEEDKLMAQLEYIRNERETNRLREELRQREVMQERQRLFWEMH 381
Query: 348 ERQAE-ELKRRD 358
++AE E+ +RD
Sbjct: 382 RKRAEDEVPQRD 393
>gi|410910840|ref|XP_003968898.1| PREDICTED: splicing factor, proline- and glutamine-rich-like
[Takifugu rubripes]
Length = 667
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 161/388 (41%), Positives = 227/388 (58%), Gaps = 48/388 (12%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168
++ CRL++GN+ DITE +LF YGE E+FINK K FGFIR++ + A+ AKA+
Sbjct: 268 RYTQRCRLFIGNLPNDITEEAFKKLFAKYGEPSEVFINKGKGFGFIRLESRALAEIAKAE 327
Query: 169 LDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSK 228
LD +KGR L++RFA +AA+ VKNL+ V+NELLE AF FG +ERA+VIVD+RG S
Sbjct: 328 LDDTPMKGRPLRVRFATHSAALSVKNLSPFVSNELLEEAFSQFGMVERAVVIVDDRGRST 387
Query: 229 CEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEF 288
+GIVEFA KPAA +AL RC+EG F LT S RPV+VEPLE D+ DGL E+ + +K P +
Sbjct: 388 GKGIVEFASKPAARKALDRCSEGVFLLTCSPRPVVVEPLEQFDDEDGLPEK-LAQKNPRY 446
Query: 289 YKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWE--M 346
+R+ PRFA +FEFEY RWK L E+ + + + + K + + RE+ +AE E
Sbjct: 447 QAEREEPPRFARPGTFEFEYAKRWKSLDEMEKQQRQQVEKNMQE---AREKLEAEMEDAY 503
Query: 347 KERQA----EELKRRDEELMKK---HAEEMQLR--------------------LAQQEED 379
E QA ++L RR EEL + H++EMQ R + EE
Sbjct: 504 HEHQANLLRQDLLRRQEELRRMEELHSQEMQKRKELQLRQEEERRRREEEMLRKREMEEQ 563
Query: 380 LRRRQNDNSM---FLVEQQQGRGGSGG--------YGSPGQAYGNAIIDFEALAAAVGNA 428
+RR++ +N F+ +++ R SGG +G+ GQ + + FE +G++
Sbjct: 564 MRRQREENYRMGGFMDREREMRMNSGGAMGLGDMSFGAAGQKFPMGGLGFEG-QQGMGSS 622
Query: 429 VVGNVTGVDNKGSAMDFDQGGRSGGGGG 456
GN+ G D + F QGG G G G
Sbjct: 623 -PGNMMGNDMRNER--FSQGGPRGMGPG 647
>gi|195349298|ref|XP_002041182.1| GM15178 [Drosophila sechellia]
gi|194122787|gb|EDW44830.1| GM15178 [Drosophila sechellia]
Length = 314
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 131/278 (47%), Positives = 183/278 (65%), Gaps = 44/278 (15%)
Query: 175 KGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVE 234
KGR L++RFAP NA ++V NL V+NELL +F +FG IERA++ VD+RG EGIVE
Sbjct: 3 KGRVLRVRFAP-NAIVRVSNLNQFVSNELLHQSFEIFGPIERAVICVDDRGKHTGEGIVE 61
Query: 235 FARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQV 294
FA+K +A+ LR C E CFFLT SLRP +VEP+E+ ++ DG+ ++T+NKK+PEF +R V
Sbjct: 62 FAKKSSASACLRLCNEKCFFLTASLRPCLVEPMEVNNDNDGMPDKTLNKKSPEFNHERSV 121
Query: 295 GPRFATVNSFEFEYGSRWKQLHEL---------------------------YEHETEMLR 327
GPRFA++NSFE EYGSRWKQLH+L YE ETE+LR
Sbjct: 122 GPRFASLNSFEHEYGSRWKQLHDLFKSKQDALKRELKMEEDKLEAQMEYARYEQETELLR 181
Query: 328 KELAQREIDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDN 387
+EL +RE+D ER K EWEM+E+QAEE+++R+EE M+++ Q +L EED+R RQ ++
Sbjct: 182 QELRKRELDNERMKLEWEMREKQAEEIRKREEEHMRRY----QSQLLHHEEDMRARQQES 237
Query: 388 SM--------FLVEQQQGRGGSG----GYGSPGQAYGN 413
+ +++QQ+G GS + SP + +GN
Sbjct: 238 DLLAQAHKLNLILDQQEGFVGSNFGFDRFESPFEVFGN 275
>gi|47215854|emb|CAG02317.1| unnamed protein product [Tetraodon nigroviridis]
Length = 414
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 161/388 (41%), Positives = 223/388 (57%), Gaps = 48/388 (12%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168
++ CRL++GN+ DITE+ +LF YGE E+FINK K FGFIR++ + A+ AKA+
Sbjct: 15 RYTQRCRLFIGNLPNDITEDAFKKLFAKYGEPSEVFINKGKGFGFIRLESRALAEIAKAE 74
Query: 169 LDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSK 228
LD +KGR L++RFA +AA+ VKNL+ V+NELLE AF FG +ERA+VIVD+RG S
Sbjct: 75 LDDTPMKGRPLRVRFATHSAALSVKNLSPFVSNELLEEAFSQFGMVERAVVIVDDRGRST 134
Query: 229 CEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEF 288
+GIVEFA KPAA +AL RC EG F LT S RPV+VEPLE D+ DGL E+ + +K P +
Sbjct: 135 GKGIVEFASKPAARKALDRCNEGVFLLTSSPRPVVVEPLEQFDDEDGLPEK-LAQKNPRY 193
Query: 289 YKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWE--M 346
+R+ PRFA +FEFEY RWK L E+ + + + + K + + RE+ +AE E
Sbjct: 194 QAEREEPPRFARPGTFEFEYAKRWKSLDEMEKQQRQQVEKNMQE---AREKLEAEMEDAF 250
Query: 347 KERQA----EELKRRDEELMKK---HAEEMQLRLAQQ--------------------EED 379
E QA ++L RR EEL + H++EMQ R Q EE
Sbjct: 251 HEHQANLLRQDLLRRQEELRRMEELHSQEMQKRKEMQLRQEEERRRREEEMLRKREMEEQ 310
Query: 380 LRRRQNDNSM---FLVEQQQGRGGSGG--------YGSPGQAYGNAIIDFEALAAAVGNA 428
+RR++ +N F+ +++ R SGG +G+ GQ + + FE A
Sbjct: 311 MRRQREENYRMGGFMDREREIRMNSGGAMGLGDMSFGAAGQKFPMGGLGFEGQQGM--GA 368
Query: 429 VVGNVTGVDNKGSAMDFDQGGRSGGGGG 456
G + G D + F QGG G G G
Sbjct: 369 SPGGLMGNDMRNER--FSQGGPRGMGPG 394
>gi|427782489|gb|JAA56696.1| Putative splicing factor proline- and glutamine-rich [Rhipicephalus
pulchellus]
Length = 473
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 130/279 (46%), Positives = 174/279 (62%), Gaps = 34/279 (12%)
Query: 86 EKIMAIQGPTLDL---PPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQE 142
E++ ++GPT L EP+ KF CRL++GN+ + TE +LF+ YGE E
Sbjct: 54 EQLSYLRGPTSGLETRATVEPK----KFTGRCRLFVGNLPNNFTEEQFRKLFEDYGEVAE 109
Query: 143 LFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNE 202
+F+N K FGF+++D + NA+ AKA LD ++ + L++RFA AA+KVKN + VTNE
Sbjct: 110 IFLNTAKGFGFVKLDTRQNAEAAKAALDFMPMQQKPLRVRFATHGAALKVKNFSQWVTNE 169
Query: 203 LLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPV 262
LLELAF VFG++ERA+VIVD+RG S EGIVEF+RK AA QAL+RC+E CF LT + RPV
Sbjct: 170 LLELAFSVFGEVERAVVIVDDRGRSVGEGIVEFSRKQAAQQALKRCSEECFILTSTPRPV 229
Query: 263 IVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHE----- 317
+VEPLE DE DGL E +F K+R+ GPR A V SFE+E+ RWK+L+E
Sbjct: 230 VVEPLEQRDEDDGLPEMNFQPNNKQFQKEREAGPRLAEVGSFEYEFAMRWKKLYEDERAR 289
Query: 318 ----------------------LYEHETEMLRKELAQRE 334
LYEHE MLR++L + E
Sbjct: 290 REQLEQDILSCRRSLEDQMEALLYEHEANMLREKLRRME 328
>gi|432882743|ref|XP_004074122.1| PREDICTED: splicing factor, proline- and glutamine-rich-like
[Oryzias latipes]
Length = 719
Score = 248 bits (632), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 135/274 (49%), Positives = 180/274 (65%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
++ CRL++GN+ DITE D ++F YGE E+FINK K FGFIR++ + A+ AKA+L
Sbjct: 322 YSQRCRLFVGNLPNDITEEDFKKMFAKYGEPSEVFINKAKGFGFIRLESRALAEIAKAEL 381
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D +K R L++RFA +AA+ VKNL+ V+NELLE AF FG +ERAIVIVD+RG S C
Sbjct: 382 DDIPMKNRPLRVRFATHSAALSVKNLSPFVSNELLEEAFSQFGMVERAIVIVDDRGRSTC 441
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ + AA +AL RC EG F LT S RPV+VEPLE D DGL E+ + +K P++
Sbjct: 442 KGIVEFSSRVAARKALDRCNEGVFLLTSSPRPVVVEPLEQYDTEDGLPEK-LAQKNPKYQ 500
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMK-- 347
R+ PRFA +FEFEY RWK L E+ + + + + K + RE R+K E EM+
Sbjct: 501 AAREEPPRFARPGTFEFEYAKRWKSLDEMEKQQRQQVEKNM--REA---REKLESEMEDA 555
Query: 348 --ERQA----EELKRRDEELMK---KHAEEMQLR 372
E QA +EL RR EEL + H +EMQ R
Sbjct: 556 YHEHQANLLRQELLRRQEELRRMEEMHNQEMQKR 589
>gi|405957146|gb|EKC23378.1| Splicing factor, proline- and glutamine-rich [Crassostrea gigas]
Length = 563
Score = 248 bits (632), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 138/324 (42%), Positives = 204/324 (62%), Gaps = 24/324 (7%)
Query: 97 DLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRM 156
D P EP+ KF CRL++GN+ + ++ + LF +GET E+F+N K FGFIR+
Sbjct: 128 DAAPREPK----KFTGRCRLFVGNVTSETSDEEFKNLFSKFGETGEMFLNGSKGFGFIRL 183
Query: 157 DYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIER 216
DY+HNA+ AKA LDG KGR+L++RF+ +AIK+KNL+ V+NELLE+A FGD+ER
Sbjct: 184 DYRHNAEAAKAALDGSQHKGRTLRVRFSNQGSAIKIKNLSPFVSNELLEMAMQQFGDVER 243
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGL 276
A+V+VD+RG S EGIVEFARKP A QAL+R +G F +T S RP+ E LE DE DGL
Sbjct: 244 AVVVVDDRGRSTGEGIVEFARKPGAQQALKRINDGVFLMTSSQRPISAENLEAKDEDDGL 303
Query: 277 SERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREID 336
SE+ + + ++ +R+ PRFA SFE+ +G +++++ EL + + E +++E+ D
Sbjct: 304 SEKFL-PRNQQYQAEREKEPRFAPPGSFEYRFGLKYREIDELEKQQIERVKQEM-----D 357
Query: 337 RERQKAEWEMK----ERQAEELK----RRDEELMKKHAEEMQLRLAQQEEDLRRRQND-- 386
++R K E EM+ + QAE+++ R+ EEL + EEM+ ++ ++ R +D
Sbjct: 358 QQRMKLEHEMEGAMFDFQAEQIRADLLRQQEEL--RRLEEMKTEKMRRRQEYDFRMDDEQ 415
Query: 387 --NSMFLVEQQQGRGGSGGYGSPG 408
N M Q RGG G PG
Sbjct: 416 RLNMMDDDRQHMMRGGRPGMDQPG 439
>gi|318087196|gb|ADV40190.1| putative proline and glutamine-rich splicing factor [Latrodectus
hesperus]
Length = 331
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 119/250 (47%), Positives = 172/250 (68%), Gaps = 1/250 (0%)
Query: 83 YFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQE 142
+ EK+ + GPT +L E + KF CRL++GN+ IT+ + ++F+ +GE E
Sbjct: 79 FVKEKLEFMSGPTTNLTSKEGVSAK-KFTGRCRLFVGNLPTSITDEEFRKMFEQFGELGE 137
Query: 143 LFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNE 202
+F++K+K FGF+ +D + NA+ AKA LD + GR L++RFA AA+K+KNL+ ++NE
Sbjct: 138 VFLHKQKGFGFVNLDTRQNAENAKAALDFTMKDGRQLRVRFATHGAALKIKNLSPWISNE 197
Query: 203 LLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPV 262
LLE AF VFGD+ERA+VIVD+RG EGIVE+ RK +A AL+RC EGC+ LT S RPV
Sbjct: 198 LLEAAFSVFGDVERAVVIVDDRGRPVGEGIVEYTRKQSAQLALKRCTEGCYLLTSSPRPV 257
Query: 263 IVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHE 322
+VEPLE DE DGL E+ K ++ K+R++GPR A +FEFE+ +RWK+L+EL + +
Sbjct: 258 VVEPLEHRDEEDGLPEKNFQKSNKQYLKEREIGPRLAEPGTFEFEFANRWKRLYELEQQK 317
Query: 323 TEMLRKELAQ 332
E L KE+ +
Sbjct: 318 REHLEKEIEE 327
>gi|126330354|ref|XP_001380561.1| PREDICTED: splicing factor, proline- and glutamine-rich-like
[Monodelphis domestica]
Length = 700
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 151/371 (40%), Positives = 216/371 (58%), Gaps = 46/371 (12%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DIT+ D LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 287 YTQRCRLFVGNLPADITDEDFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 346
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 347 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 406
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 407 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 465
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHEL---------------------------YEHE 322
K+R+ PRFA +FEFEY RWK L E+ +EH+
Sbjct: 466 KERENPPRFAQHGTFEFEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYHEHQ 525
Query: 323 TEMLRKELAQR--EIDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDL 380
+LR++L +R E+ R + EM++R+ E++ R EE ++ EEM +R + EE +
Sbjct: 526 ANLLRQDLMRRQEELRRMEELHNQEMQKRK--EIQLRQEEERRRREEEMMIRQREMEEQM 583
Query: 381 RRRQNDN-----SMFLVEQQQGRGGSGG------YGSPGQAY---GNAIIDFEALAAAVG 426
RR++ ++ M E++ GG+ YGS Q + G I +EA
Sbjct: 584 RRQREESYSRMGYMDPREREIRMGGAAAMNMGDPYGSGSQKFPPLGGGGIGYEASPGVPP 643
Query: 427 NAVVGNVTGVD 437
A+ G++ G D
Sbjct: 644 TALSGSMMGSD 654
>gi|348542243|ref|XP_003458595.1| PREDICTED: splicing factor, proline- and glutamine-rich-like
[Oreochromis niloticus]
Length = 637
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 136/278 (48%), Positives = 180/278 (64%), Gaps = 17/278 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE+D +F YGE E+FINK K FGFIR++ + A+ AKA+L
Sbjct: 240 YTQRCRLFVGNLPNDITEDDFRRMFAKYGEPTEVFINKGKGFGFIRLESRALAEIAKAEL 299
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D +KGR L++RFA +AA+ VKNL+ V+NELLE AF FG +ERAIV+VD+RG S
Sbjct: 300 DDTPMKGRPLRVRFATHSAALSVKNLSPFVSNELLEEAFSQFGMVERAIVVVDDRGRSTG 359
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
GIVEFA +PAA +AL RC EG F LT S RPV+VEPLE D DGL E+ + +K P++
Sbjct: 360 RGIVEFASRPAARKALERCNEGVFLLTTSPRPVVVEPLEQYDSEDGLPEK-LAQKNPKYK 418
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMK-- 347
+R+ PRFA +FEFEY RWK L E+ + + + + K + RE R K E EM+
Sbjct: 419 TEREEPPRFARPGTFEFEYAKRWKSLDEMEKQQRQQVEKNM--REA---RDKLESEMEDA 473
Query: 348 --ERQA----EELKRRDEELMK---KHAEEMQLRLAQQ 376
E QA ++L RR EEL + H +EMQ R Q
Sbjct: 474 YHEHQANLLRQDLLRRQEELRRMEEMHNQEMQKRKEMQ 511
>gi|363742292|ref|XP_417784.3| PREDICTED: splicing factor, proline- and glutamine-rich [Gallus
gallus]
Length = 647
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 136/307 (44%), Positives = 191/307 (62%), Gaps = 32/307 (10%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DIT+ D LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 233 YTQRCRLFVGNLPADITDEDFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 292
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG +ERA+VIVD+RG S
Sbjct: 293 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPVERAVVIVDDRGRSTG 352
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 353 KGIVEFASKPAARKAFERCTEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 411
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHEL---------------------------YEHE 322
K+R+ PRFA SFEFEY RWK L E+ +EH+
Sbjct: 412 KERETPPRFAQPGSFEFEYSQRWKSLDEMEKQQREQVAKNMKDAKDKLESEMEDAYHEHQ 471
Query: 323 TEMLRKELAQR--EIDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDL 380
+LR++L +R E+ R + EM++R+ E++ R EE ++ EEM +R + EE +
Sbjct: 472 ANLLRQDLMRRQEELRRMEELHNQEMQKRK--EIQLRQEEERRRREEEMMIRQREMEEQM 529
Query: 381 RRRQNDN 387
RR++ +N
Sbjct: 530 RRQREEN 536
>gi|449489106|ref|XP_002195780.2| PREDICTED: splicing factor, proline- and glutamine-rich
[Taeniopygia guttata]
Length = 648
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 143/345 (41%), Positives = 203/345 (58%), Gaps = 36/345 (10%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DIT+ D LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 234 YTQRCRLFVGNLPADITDEDFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 293
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG +ERA+VIVD+RG S
Sbjct: 294 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPVERAVVIVDDRGRSTG 353
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 354 KGIVEFASKPAARKAFERCTEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 412
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHEL---------------------------YEHE 322
K+R+ PRFA SFEFEY RWK L E+ +EH+
Sbjct: 413 KERETPPRFAQPGSFEFEYSQRWKSLDEMEKQQREQVAKNMKDAKDKLESEMEDAYHEHQ 472
Query: 323 TEMLRKELAQR--EIDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDL 380
+LR++L +R E+ R + EM++R+ E++ R EE ++ EEM +R + EE +
Sbjct: 473 ANLLRQDLMRRQEELRRMEELHNQEMQKRK--EIQLRQEEERRRREEEMMIRQREMEEQM 530
Query: 381 RRRQNDNSMFL----VEQQQGRGGSGGYGSPGQAYGNAIIDFEAL 421
RR++ +N + ++ R G + G Y +A F L
Sbjct: 531 RRQREENYSRMGYMDPRERDMRMGGAATMNMGDPYASAAQKFPPL 575
>gi|395526496|ref|XP_003765398.1| PREDICTED: splicing factor, proline- and glutamine-rich
[Sarcophilus harrisii]
Length = 492
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 150/370 (40%), Positives = 217/370 (58%), Gaps = 45/370 (12%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DIT+ D LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 80 YTQRCRLFVGNLPADITDEDFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 139
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 140 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 199
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 200 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 258
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHEL---------------------------YEHE 322
K+R+ PRFA +FEFEY RWK L E+ +EH+
Sbjct: 259 KERENPPRFAQHGTFEFEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYHEHQ 318
Query: 323 TEMLRKELAQR--EIDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDL 380
+LR++L +R E+ R + EM++R+ E++ R EE ++ EEM +R + EE +
Sbjct: 319 ANLLRQDLMRRQEELRRMEELHNQEMQKRK--EIQLRQEEERRRREEEMMIRQREMEEQM 376
Query: 381 RRRQNDNSMFL----VEQQQGRGGSGG------YGSPGQAY---GNAIIDFEALAAAVGN 427
RR++ ++ + +++ R G+G YGS Q + G I +EA
Sbjct: 377 RRQREESYSRMGYMDPREREIRMGAGTMNMGDPYGSGSQKFPPLGGGGIGYEASPGVPPT 436
Query: 428 AVVGNVTGVD 437
A+ G++ G D
Sbjct: 437 ALSGSMMGSD 446
>gi|195052954|ref|XP_001993403.1| GH13089 [Drosophila grimshawi]
gi|193900462|gb|EDV99328.1| GH13089 [Drosophila grimshawi]
Length = 545
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 136/369 (36%), Positives = 213/369 (57%), Gaps = 32/369 (8%)
Query: 80 GDRY-FTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYG 138
GD Y +K+ ++ GPT+ + E + ++++FA RLY+GN+ + + ELFKPYG
Sbjct: 163 GDEYSVIQKLRSLSGPTIQIETME-EREELRFAGRNRLYVGNLTDIHNIDGLHELFKPYG 221
Query: 139 ETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSC 198
E E+F++ +K + F+++DY NA+KAK LD V+ GR L++RFA ++V NLT
Sbjct: 222 ELGEVFLSPDKKYAFVKVDYYVNAEKAKRALDDTVVNGRPLRVRFANNATVLRVSNLTPF 281
Query: 199 VTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQS 258
V+NELL +F +FG +ERAI+ VD+RGN EG +EFA+K +A LR C E CFFLT S
Sbjct: 282 VSNELLYKSFEIFGPVERAIITVDDRGNHMGEGTIEFAKKSSATTCLRMCQERCFFLTAS 341
Query: 259 LRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHEL 318
LRP +VE L+ T+ +DG E+++NK + ++ ++R +GPRFA NSFE EYG++W +L++
Sbjct: 342 LRPCVVE-LKETENVDGFPEKSLNKNS-KYNQERGLGPRFAEPNSFECEYGTKWMELYDR 399
Query: 319 YEHETEMLRKELA---------------------------QREIDRERQKAEWEMKERQA 351
Y T L++EL +RE D+ER K+ WEM + Q+
Sbjct: 400 YRFATVTLKRELQLAGEDLESKLNIARYERETELLREELNKRERDKERFKSNWEMNQEQS 459
Query: 352 EELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQQGRGGSGGYGSPGQAY 411
+ + + + L Q+ +RR+Q + +++ GG+ YGS
Sbjct: 460 MGFNQSCSDSLLYSQNGLNGHLMCQDGPMRRQQQERPLYMPAMPNSFGGNNDYGSKNLGM 519
Query: 412 GNA-IIDFE 419
N+ + FE
Sbjct: 520 DNSPFVVFE 528
>gi|346466581|gb|AEO33135.1| hypothetical protein [Amblyomma maculatum]
Length = 363
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 121/253 (47%), Positives = 163/253 (64%), Gaps = 27/253 (10%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168
KF CRL++GN+ + TE +LF+ YGE E+F+N K FGF+++D + NA+ AKA
Sbjct: 3 KFTGRCRLFVGNLPSNFTEEQFRKLFENYGEVAEIFLNTSKGFGFVKLDTRQNAEAAKAA 62
Query: 169 LDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSK 228
LD ++ + L++RFA +AA+KVKN + VTNELLELAF VFG++ERA+VIVD+RG S
Sbjct: 63 LDFMPMQQKPLRVRFATHSAALKVKNFSQWVTNELLELAFSVFGEVERAVVIVDDRGRSV 122
Query: 229 CEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEF 288
EGIVEF+RK AA QAL+RC+E CF LT + RPV+VEPLE DE DGL E ++
Sbjct: 123 GEGIVEFSRKQAAQQALKRCSEECFILTSTPRPVVVEPLEQRDEDDGLPEMNFQPNNKQY 182
Query: 289 YKQRQVGPRFATVNSFEFEYGSRWKQLHE---------------------------LYEH 321
K+R+ GPR A + SFE+E+ RWK+L+E LYEH
Sbjct: 183 QKEREAGPRLAEMGSFEYEFAMRWKKLYEDERARREQLEQDILSCRRSLEDQMEALLYEH 242
Query: 322 ETEMLRKELAQRE 334
E MLR++L + E
Sbjct: 243 EANMLREKLRRME 255
>gi|329664922|ref|NP_001193220.1| splicing factor, proline- and glutamine-rich [Bos taurus]
gi|296489006|tpg|DAA31119.1| TPA: splicing factor proline/glutamine-rich (polypyrimidine tract
binding protein associated) [Bos taurus]
Length = 707
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 178/274 (64%), Gaps = 9/274 (3%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 293 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 352
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 353 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 412
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 413 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 471
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FE+EY RWK L E+ + + E + K + + D+ + E E
Sbjct: 472 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEH 530
Query: 350 QA----EELKRRDEELMKK---HAEEMQLRLAQQ 376
QA ++L RR EEL + H +EMQ R Q
Sbjct: 531 QANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQ 564
>gi|327269018|ref|XP_003219292.1| PREDICTED: paraspeckle component 1-like [Anolis carolinensis]
Length = 529
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 123/253 (48%), Positives = 170/253 (67%), Gaps = 12/253 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 81 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 140
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +ERA+V+VD+RG +
Sbjct: 141 DGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVERAVVVVDDRGRATG 200
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G VEFA KP A +AL RC++G F LT + RPVIVEP+E D+ DGL E+ + +KT +++
Sbjct: 201 KGFVEFAAKPPARKALERCSDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM-QKTQQYH 259
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FEFEY SRWK L E+ E ++E R I ++K E EM
Sbjct: 260 KEREQPPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIKEAKEKLEAEM--- 311
Query: 350 QAEELKRRDEELM 362
E R + +LM
Sbjct: 312 ---EAARHEHQLM 321
>gi|395830395|ref|XP_003788316.1| PREDICTED: splicing factor, proline- and glutamine-rich [Otolemur
garnettii]
Length = 546
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 150/372 (40%), Positives = 215/372 (57%), Gaps = 38/372 (10%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 132 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 191
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 192 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 251
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 252 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 310
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHEL---------------------------YEHE 322
K+R+ PRFA +FE+EY RWK L E+ +EH+
Sbjct: 311 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYHEHQ 370
Query: 323 TEMLRKELAQR--EIDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDL 380
+LR++L +R E+ R + EM++R+ E++ R EE ++ EEM +R + EE +
Sbjct: 371 ANLLRQDLMRRQEELRRMEELHNQEMQKRK--EMQLRQEEERRRREEEMMIRQREMEEQM 428
Query: 381 RRRQNDNSMFL----VEQQQGRGGSGGYGSPGQAYGNAIIDFEALAAAVGNAVVGN--VT 434
RR++ ++ + ++ R G+GG + G YG+ F L G N V
Sbjct: 429 RRQREESYSRMGYMDPRERDMRMGAGGAMNMGDPYGSGGQKFPPLGGGGGIGYEANPGVP 488
Query: 435 GVDNKGSAMDFD 446
GS M D
Sbjct: 489 PATMSGSMMGSD 500
>gi|4826998|ref|NP_005057.1| splicing factor, proline- and glutamine-rich [Homo sapiens]
gi|353411940|ref|NP_001238776.1| splicing factor, proline- and glutamine-rich [Pan troglodytes]
gi|297665569|ref|XP_002811119.1| PREDICTED: splicing factor, proline- and glutamine-rich [Pongo
abelii]
gi|1709851|sp|P23246.2|SFPQ_HUMAN RecName: Full=Splicing factor, proline- and glutamine-rich;
AltName: Full=100 kDa DNA-pairing protein;
Short=hPOMp100; AltName: Full=DNA-binding p52/p100
complex, 100 kDa subunit; AltName: Full=Polypyrimidine
tract-binding protein-associated-splicing factor;
Short=PSF; Short=PTB-associated-splicing factor
gi|38458|emb|CAA50283.1| PTB-associated splicing factor [Homo sapiens]
gi|119627831|gb|EAX07426.1| splicing factor proline/glutamine-rich (polypyrimidine tract
binding protein associated), isoform CRA_f [Homo
sapiens]
gi|410227606|gb|JAA11022.1| splicing factor proline/glutamine-rich [Pan troglodytes]
gi|410251806|gb|JAA13870.1| splicing factor proline/glutamine-rich [Pan troglodytes]
gi|410295002|gb|JAA26101.1| splicing factor proline/glutamine-rich [Pan troglodytes]
gi|410348606|gb|JAA40907.1| splicing factor proline/glutamine-rich [Pan troglodytes]
Length = 707
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 178/274 (64%), Gaps = 9/274 (3%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 293 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 352
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 353 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 412
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 413 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 471
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FE+EY RWK L E+ + + E + K + + D+ + E E
Sbjct: 472 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEH 530
Query: 350 QA----EELKRRDEELMKK---HAEEMQLRLAQQ 376
QA ++L RR EEL + H +EMQ R Q
Sbjct: 531 QANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQ 564
>gi|387542058|gb|AFJ71656.1| splicing factor, proline- and glutamine-rich [Macaca mulatta]
Length = 707
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 178/274 (64%), Gaps = 9/274 (3%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 293 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 352
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 353 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 412
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 413 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 471
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FE+EY RWK L E+ + + E + K + + D+ + E E
Sbjct: 472 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEH 530
Query: 350 QA----EELKRRDEELMKK---HAEEMQLRLAQQ 376
QA ++L RR EEL + H +EMQ R Q
Sbjct: 531 QANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQ 564
>gi|241044154|ref|XP_002407174.1| proline and glutamine-rich splicing factor (SFPQ), putative [Ixodes
scapularis]
gi|215492126|gb|EEC01767.1| proline and glutamine-rich splicing factor (SFPQ), putative [Ixodes
scapularis]
Length = 670
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 131/297 (44%), Positives = 195/297 (65%), Gaps = 8/297 (2%)
Query: 92 QGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMF 151
Q P + P +P+ + CRL++GN+ +TE + +LF YGE E+F++ +K F
Sbjct: 269 QSPQQGMAPPQPKRSGAR----CRLFVGNLAPSMTEEEFRKLFSAYGELVEVFLHSQKGF 324
Query: 152 GFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVF 211
GFI+ + + A+ AK LD G+ L++RFA +++KVKNL+ V+NELLE AF +F
Sbjct: 325 GFIKYEQRQQAEAAKTALDNVPRDGKYLQVRFATQGSSLKVKNLSPFVSNELLEDAFSIF 384
Query: 212 GDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTD 271
G+I+RA+VIVD+RG S EGIVEFARK +A AL++ +GC LT S RPV+VEPL+L D
Sbjct: 385 GEIDRAVVIVDDRGRSVGEGIVEFARKTSAMAALKKATQGCLLLTSSPRPVLVEPLDLRD 444
Query: 272 EIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL- 330
E DG E+ +NK P+F K+R+VGPRFA +FEFE+ SRWK+L EL + + E L +EL
Sbjct: 445 EEDGFPEKNVNKNNPQFLKEREVGPRFAEPGTFEFEFSSRWKKLLELEKQKREFLERELE 504
Query: 331 -AQREIDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQE--EDLRRRQ 384
+R+++ E + +E + R E R EE K A E ++RL +Q+ +++RR++
Sbjct: 505 DERRKLEEEMEYYRYEHETRLLREQLRIMEEQSKIFAHEREMRLQEQKRRDEIRRQE 561
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLD 170
A+NC+L++ N+ +T+ ++F+ GE +++F+NK K FGF+ A+KA LD
Sbjct: 147 ADNCKLFVSNVPNVMTDEMFRKMFEEQGEVRDIFLNKTKWFGFVLYKTHDQAEKALKALD 206
Query: 171 GHVLKGRSLKIRFA 184
G GR L++R+A
Sbjct: 207 GAEKNGRRLRVRYA 220
>gi|426328901|ref|XP_004025485.1| PREDICTED: splicing factor, proline- and glutamine-rich [Gorilla
gorilla gorilla]
Length = 674
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 178/274 (64%), Gaps = 9/274 (3%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 260 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 319
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 320 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 379
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 380 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 438
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FE+EY RWK L E+ + + E + K + + D+ + E E
Sbjct: 439 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEH 497
Query: 350 QA----EELKRRDEELMKK---HAEEMQLRLAQQ 376
QA ++L RR EEL + H +EMQ R Q
Sbjct: 498 QANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQ 531
>gi|23956214|ref|NP_076092.1| splicing factor, proline- and glutamine-rich [Mus musculus]
gi|68566057|sp|Q8VIJ6.1|SFPQ_MOUSE RecName: Full=Splicing factor, proline- and glutamine-rich;
AltName: Full=DNA-binding p52/p100 complex, 100 kDa
subunit; AltName: Full=Polypyrimidine tract-binding
protein-associated-splicing factor; Short=PSF;
Short=PTB-associated-splicing factor
gi|17136071|gb|AAK60397.1| PTB-associated splicing factor [Mus musculus]
gi|58477484|gb|AAH89305.1| Splicing factor proline/glutamine rich (polypyrimidine tract
binding protein associated) [Mus musculus]
Length = 699
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 179/274 (65%), Gaps = 9/274 (3%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 285 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 344
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 345 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 404
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 405 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 463
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FE+EY RWK L E+ + + E + K + + D+ + E E
Sbjct: 464 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEH 522
Query: 350 QA----EELKRRDEELMKK---HAEEMQLRLAQQ 376
QA ++L RR EEL + H++EMQ R Q
Sbjct: 523 QANLLRQDLMRRQEELRRMEELHSQEMQKRKEMQ 556
>gi|70778983|ref|NP_001020442.1| splicing factor, proline- and glutamine-rich [Rattus norvegicus]
gi|68534278|gb|AAH98731.1| Splicing factor proline/glutamine rich (polypyrimidine tract
binding protein associated) [Rattus norvegicus]
Length = 699
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 179/274 (65%), Gaps = 9/274 (3%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 285 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 344
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 345 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 404
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 405 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 463
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FE+EY RWK L E+ + + E + K + + D+ + E E
Sbjct: 464 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEH 522
Query: 350 QA----EELKRRDEELMKK---HAEEMQLRLAQQ 376
QA ++L RR EEL + H++EMQ R Q
Sbjct: 523 QANLLRQDLMRRQEELRRMEELHSQEMQKRKEMQ 556
>gi|291236254|ref|XP_002738055.1| PREDICTED: splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated)-like [Saccoglossus
kowalevskii]
Length = 544
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 128/314 (40%), Positives = 195/314 (62%), Gaps = 36/314 (11%)
Query: 104 QNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNAD 163
Q + KF+ CRL++GN+ D E + ++FK YG+ E+++NKE+ FGFIR+D + NA+
Sbjct: 63 QKVEKKFSGRCRLFVGNLTNDTDEEEFKKMFKKYGDVSEVYLNKERGFGFIRLDTRLNAE 122
Query: 164 KAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE 223
AK++LDG +GR L++RFA AA++++NL V+NELLE AF FG IERA+VIVD+
Sbjct: 123 MAKSELDGSTRRGRVLRVRFATHGAALRIRNLHPVVSNELLEQAFSQFGVIERAVVIVDD 182
Query: 224 RGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINK 283
RG +GIVEF+RKP A AL+RC EGCF LT + +P+IVEPL+ DE DGL E+ + +
Sbjct: 183 RGRPTGDGIVEFSRKPGAQNALKRCKEGCFVLTTTPKPIIVEPLDQKDEEDGLPEKNV-Q 241
Query: 284 KTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKE-------------- 329
K ++K+R+ PRFA SFE+E+ +WKQ +E + + E+L+K+
Sbjct: 242 KNATYHKEREGIPRFAAPGSFEYEWSCKWKQQYEYEQEQLELLKKQQMDGRDKLDCEMES 301
Query: 330 --------------LAQREIDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQ 375
+ ++E R ++ +M+ R+ EE K R+E+ ++ A A+
Sbjct: 302 AAGERQAMLMRQDLMRRQEELRRLEENRRDMERRRQEEFKMREEQRRREMA-------AK 354
Query: 376 QEEDLRRRQNDNSM 389
QE+ +RRR +D M
Sbjct: 355 QEDMMRRRDSDLRM 368
>gi|148698321|gb|EDL30268.1| mCG10912, isoform CRA_a [Mus musculus]
Length = 659
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 131/276 (47%), Positives = 182/276 (65%), Gaps = 13/276 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 245 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 304
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 305 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 364
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 365 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 423
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL--AQREIDRERQKAEWEMK 347
K+R+ PRFA +FE+EY RWK L E+ + + E + K + A+ +++ E + A
Sbjct: 424 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDA---YH 480
Query: 348 ERQA----EELKRRDEELMKK---HAEEMQLRLAQQ 376
E QA ++L RR EEL + H++EMQ R Q
Sbjct: 481 EHQANLLRQDLMRRQEELRRMEELHSQEMQKRKEMQ 516
>gi|119627829|gb|EAX07424.1| splicing factor proline/glutamine-rich (polypyrimidine tract
binding protein associated), isoform CRA_d [Homo
sapiens]
Length = 669
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 178/274 (64%), Gaps = 9/274 (3%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 293 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 352
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 353 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 412
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 413 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 471
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FE+EY RWK L E+ + + E + K + + D+ + E E
Sbjct: 472 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEH 530
Query: 350 QA----EELKRRDEELMKK---HAEEMQLRLAQQ 376
QA ++L RR EEL + H +EMQ R Q
Sbjct: 531 QANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQ 564
>gi|346464537|gb|AEO32113.1| hypothetical protein [Amblyomma maculatum]
Length = 501
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 124/266 (46%), Positives = 184/266 (69%), Gaps = 2/266 (0%)
Query: 114 CRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHV 173
CRL++GN+G ++TE + LF +GE E+F++ +K FGF++ D +H A+ AKA LD
Sbjct: 119 CRLFVGNLGANMTEEEFRRLFGEFGELVEVFLHAQKGFGFVKFDQRHQAEAAKAALDNTP 178
Query: 174 LKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIV 233
+GR L++RFA +++KVKNL+ V+NELLE AF +FG+I+RA+VIVD+RG S EGIV
Sbjct: 179 HEGRYLQVRFATQGSSLKVKNLSPYVSNELLEDAFSIFGEIDRAVVIVDDRGRSVGEGIV 238
Query: 234 EFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQ 293
EFARK +A AL++ +GC LT S RPV+VEPL+L DE DG E+ +NK P+F K+R+
Sbjct: 239 EFARKTSAMAALKKATQGCLLLTASPRPVLVEPLDLRDEEDGFPEKNVNKNNPQFLKERE 298
Query: 294 VGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL--AQREIDRERQKAEWEMKERQA 351
+GPRFA +FE+E+ SRWK+L EL + + E L +E+ +R+++ E + +E + R
Sbjct: 299 LGPRFAEPGTFEYEFSSRWKKLLELEKQKREFLEREMEDERRKLEEEMEYYRYEHETRLL 358
Query: 352 EELKRRDEELMKKHAEEMQLRLAQQE 377
E R EE K E ++R+A+Q+
Sbjct: 359 REQLRIMEEQSKMFLHEREMRIAEQK 384
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%)
Query: 120 NIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSL 179
N+ + + ++F+ +GE +++F+NK K FGF+ A+KA L+G GR L
Sbjct: 1 NVPNVMNDETFRKMFEEHGEVRDIFLNKTKWFGFVLFKTHEQAEKAMRALNGTEKHGRRL 60
Query: 180 KIRFA 184
+R+A
Sbjct: 61 NVRYA 65
>gi|119627827|gb|EAX07422.1| splicing factor proline/glutamine-rich (polypyrimidine tract
binding protein associated), isoform CRA_b [Homo
sapiens]
Length = 669
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 178/274 (64%), Gaps = 9/274 (3%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 293 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 352
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 353 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 412
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 413 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 471
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FE+EY RWK L E+ + + E + K + + D+ + E E
Sbjct: 472 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEH 530
Query: 350 QA----EELKRRDEELMKK---HAEEMQLRLAQQ 376
QA ++L RR EEL + H +EMQ R Q
Sbjct: 531 QANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQ 564
>gi|449483811|ref|XP_002190822.2| PREDICTED: paraspeckle component 1 [Taeniopygia guttata]
Length = 527
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 122/253 (48%), Positives = 170/253 (67%), Gaps = 12/253 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 81 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 140
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +ERA+V+VD+RG +
Sbjct: 141 DGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVERAVVVVDDRGRATG 200
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G VEFA KP A +AL RC++G F LT + RPV+VEP+E D+ DGL E+ + +KT +++
Sbjct: 201 KGFVEFAAKPPARKALERCSDGAFLLTTTPRPVVVEPMEQFDDEDGLPEKLM-QKTQQYH 259
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FEFEY SRWK L E+ E ++E R I ++K E EM
Sbjct: 260 KEREQPPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEKLEAEM--- 311
Query: 350 QAEELKRRDEELM 362
E R + +LM
Sbjct: 312 ---EAARHEHQLM 321
>gi|345780551|ref|XP_003432006.1| PREDICTED: splicing factor, proline- and glutamine-rich [Canis
lupus familiaris]
Length = 656
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 178/274 (64%), Gaps = 9/274 (3%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 242 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 301
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 302 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 361
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 362 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 420
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FE+EY RWK L E+ + + E + K + + D+ + E E
Sbjct: 421 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEH 479
Query: 350 QA----EELKRRDEELMKK---HAEEMQLRLAQQ 376
QA ++L RR EEL + H +EMQ R Q
Sbjct: 480 QANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQ 513
>gi|397482898|ref|XP_003846139.1| PREDICTED: LOW QUALITY PROTEIN: splicing factor, proline- and
glutamine-rich [Pan paniscus]
Length = 648
Score = 241 bits (614), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 178/274 (64%), Gaps = 9/274 (3%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 272 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 331
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 332 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 391
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 392 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 450
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FE+EY RWK L E+ + + E + K + + D+ + E E
Sbjct: 451 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEH 509
Query: 350 QA----EELKRRDEELMKK---HAEEMQLRLAQQ 376
QA ++L RR EEL + H +EMQ R Q
Sbjct: 510 QANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQ 543
>gi|38014635|gb|AAH04534.2| SFPQ protein, partial [Homo sapiens]
Length = 634
Score = 241 bits (614), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 178/274 (64%), Gaps = 9/274 (3%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 220 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 279
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 280 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 339
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 340 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 398
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FE+EY RWK L E+ + + E + K + + D+ + E E
Sbjct: 399 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEH 457
Query: 350 QA----EELKRRDEELMKK---HAEEMQLRLAQQ 376
QA ++L RR EEL + H +EMQ R Q
Sbjct: 458 QANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQ 491
>gi|71895115|ref|NP_001026002.1| paraspeckle component 1 [Gallus gallus]
gi|82233829|sp|Q5ZK88.1|PSPC1_CHICK RecName: Full=Paraspeckle component 1
gi|53131892|emb|CAG31855.1| hypothetical protein RCJMB04_12f9 [Gallus gallus]
Length = 523
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 122/253 (48%), Positives = 170/253 (67%), Gaps = 12/253 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 77 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 136
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +ERA+V+VD+RG +
Sbjct: 137 DGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVERAVVVVDDRGRATG 196
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G VEFA KP A +AL RC++G F LT + RPV+VEP+E D+ DGL E+ + +KT +++
Sbjct: 197 KGFVEFAAKPPARKALERCSDGAFLLTTTPRPVVVEPMEQFDDEDGLPEKLM-QKTQQYH 255
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FEFEY SRWK L E+ E ++E R I ++K E EM
Sbjct: 256 KEREQPPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEKLEAEM--- 307
Query: 350 QAEELKRRDEELM 362
E R + +LM
Sbjct: 308 ---EAARHEHQLM 317
>gi|431891104|gb|ELK01981.1| Splicing factor, proline- and glutamine-rich [Pteropus alecto]
Length = 635
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 178/274 (64%), Gaps = 9/274 (3%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 219 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 278
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 279 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 338
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 339 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 397
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FE+EY RWK L E+ + + E + K + + D+ + E E
Sbjct: 398 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEH 456
Query: 350 QA----EELKRRDEELMKK---HAEEMQLRLAQQ 376
QA ++L RR EEL + H +EMQ R Q
Sbjct: 457 QANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQ 490
>gi|148698320|gb|EDL30267.1| mCG1050219 [Mus musculus]
Length = 621
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 131/276 (47%), Positives = 182/276 (65%), Gaps = 13/276 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 245 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 304
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 305 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 364
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 365 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 423
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL--AQREIDRERQKAEWEMK 347
K+R+ PRFA +FE+EY RWK L E+ + + E + K + A+ +++ E + A
Sbjct: 424 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDA---YH 480
Query: 348 ERQA----EELKRRDEELMKK---HAEEMQLRLAQQ 376
E QA ++L RR EEL + H++EMQ R Q
Sbjct: 481 EHQANLLRQDLMRRQEELRRMEELHSQEMQKRKEMQ 516
>gi|148698324|gb|EDL30271.1| mCG10912, isoform CRA_d [Mus musculus]
Length = 631
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 131/276 (47%), Positives = 182/276 (65%), Gaps = 13/276 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 245 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 304
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 305 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 364
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 365 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 423
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL--AQREIDRERQKAEWEMK 347
K+R+ PRFA +FE+EY RWK L E+ + + E + K + A+ +++ E + A
Sbjct: 424 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDA---YH 480
Query: 348 ERQA----EELKRRDEELMKK---HAEEMQLRLAQQ 376
E QA ++L RR EEL + H++EMQ R Q
Sbjct: 481 EHQANLLRQDLMRRQEELRRMEELHSQEMQKRKEMQ 516
>gi|426218581|ref|XP_004003522.1| PREDICTED: splicing factor, proline- and glutamine-rich [Ovis
aries]
Length = 526
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 178/274 (64%), Gaps = 9/274 (3%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 112 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 171
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 172 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 231
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 232 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 290
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FE+EY RWK L E+ + + E + K + + D+ + E E
Sbjct: 291 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEH 349
Query: 350 QA----EELKRRDEELMKK---HAEEMQLRLAQQ 376
QA ++L RR EEL + H +EMQ R Q
Sbjct: 350 QANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQ 383
>gi|291408824|ref|XP_002720704.1| PREDICTED: splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Oryctolagus
cuniculus]
Length = 555
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 178/274 (64%), Gaps = 9/274 (3%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 141 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 200
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 201 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 260
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 261 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 319
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FE+EY RWK L E+ + + E + K + + D+ + E E
Sbjct: 320 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEH 378
Query: 350 QA----EELKRRDEELMKK---HAEEMQLRLAQQ 376
QA ++L RR EEL + H +EMQ R Q
Sbjct: 379 QANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQ 412
>gi|427788905|gb|JAA59904.1| Putative proline and glutamine-rich splicing factor sfpq
[Rhipicephalus pulchellus]
Length = 713
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 114/228 (50%), Positives = 163/228 (71%), Gaps = 5/228 (2%)
Query: 114 CRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHV 173
CRL++GN+G ++TE + +F YGE E+F++ +K FGFI+ + +H A+ AKA LD
Sbjct: 333 CRLFVGNLGNNMTEEEFRRIFGAYGELLEVFLHAQKGFGFIKYEQRHQAEAAKAALDNTP 392
Query: 174 LKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIV 233
GR L++RFA +++KVKNL+ V+NELLE AF +FG+I+RA+VIVD+RG S EGIV
Sbjct: 393 HDGRYLQVRFATQGSSLKVKNLSPFVSNELLEDAFSIFGEIDRAVVIVDDRGRSVGEGIV 452
Query: 234 EFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQ 293
EFARK +A AL++ ++ C LT S RPV+VEPL+L DE DG E+ INK P++ K+R+
Sbjct: 453 EFARKTSAMAALKKASQSCLLLTASPRPVLVEPLDLRDEEDGFPEKNINKNNPQYLKERE 512
Query: 294 VGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQK 341
+GPRFA +FE+E+ SRWK+L EL E ++E RE++ ER+K
Sbjct: 513 IGPRFAEPGTFEYEFSSRWKKLLEL-----EKQKREFLDREMEDERRK 555
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLD 170
A NC+L++ N+ + + ++F+ +GE +++F+NK K FGF+ A+KA L+
Sbjct: 203 AENCKLFVSNVSNMMNDETFRKMFEEHGEVRDIFLNKTKWFGFVLFKTHEQAEKALRALN 262
Query: 171 GHVLKGRSLKIRFA 184
G GR L +R+A
Sbjct: 263 GTEKNGRRLNVRYA 276
>gi|427788899|gb|JAA59901.1| Putative proline and glutamine-rich splicing factor sfpq
[Rhipicephalus pulchellus]
Length = 714
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 114/228 (50%), Positives = 163/228 (71%), Gaps = 5/228 (2%)
Query: 114 CRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHV 173
CRL++GN+G ++TE + +F YGE E+F++ +K FGFI+ + +H A+ AKA LD
Sbjct: 334 CRLFVGNLGNNMTEEEFRRIFGAYGELLEVFLHAQKGFGFIKYEQRHQAEAAKAALDNTP 393
Query: 174 LKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIV 233
GR L++RFA +++KVKNL+ V+NELLE AF +FG+I+RA+VIVD+RG S EGIV
Sbjct: 394 HDGRYLQVRFATQGSSLKVKNLSPFVSNELLEDAFSIFGEIDRAVVIVDDRGRSVGEGIV 453
Query: 234 EFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQ 293
EFARK +A AL++ ++ C LT S RPV+VEPL+L DE DG E+ INK P++ K+R+
Sbjct: 454 EFARKTSAMAALKKASQSCLLLTASPRPVLVEPLDLRDEEDGFPEKNINKNNPQYLKERE 513
Query: 294 VGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQK 341
+GPRFA +FE+E+ SRWK+L EL E ++E RE++ ER+K
Sbjct: 514 IGPRFAEPGTFEYEFSSRWKKLLEL-----EKQKREFLDREMEDERRK 556
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLD 170
A NC+L++ N+ + + ++F+ +GE +++F+NK K FGF+ A+KA L+
Sbjct: 203 AENCKLFVSNVSNMMNDETFRKMFEEHGEVRDIFLNKTKWFGFVLFKTHEQAEKALRALN 262
Query: 171 GHVLKGRSLKIRFA 184
G GR L +R+A
Sbjct: 263 GTEKNGRRLNVRYA 276
>gi|427788897|gb|JAA59900.1| Putative proline and glutamine-rich splicing factor sfpq
[Rhipicephalus pulchellus]
Length = 715
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 114/228 (50%), Positives = 163/228 (71%), Gaps = 5/228 (2%)
Query: 114 CRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHV 173
CRL++GN+G ++TE + +F YGE E+F++ +K FGFI+ + +H A+ AKA LD
Sbjct: 335 CRLFVGNLGNNMTEEEFRRIFGAYGELLEVFLHAQKGFGFIKYEQRHQAEAAKAALDNTP 394
Query: 174 LKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIV 233
GR L++RFA +++KVKNL+ V+NELLE AF +FG+I+RA+VIVD+RG S EGIV
Sbjct: 395 HDGRYLQVRFATQGSSLKVKNLSPFVSNELLEDAFSIFGEIDRAVVIVDDRGRSVGEGIV 454
Query: 234 EFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQ 293
EFARK +A AL++ ++ C LT S RPV+VEPL+L DE DG E+ INK P++ K+R+
Sbjct: 455 EFARKTSAMAALKKASQSCLLLTASPRPVLVEPLDLRDEEDGFPEKNINKNNPQYLKERE 514
Query: 294 VGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQK 341
+GPRFA +FE+E+ SRWK+L EL E ++E RE++ ER+K
Sbjct: 515 IGPRFAEPGTFEYEFSSRWKKLLEL-----EKQKREFLDREMEDERRK 557
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLD 170
A NC+L++ N+ + + ++F+ +GE +++F+NK K FGF+ A+KA L+
Sbjct: 204 AENCKLFVSNVSNMMNDETFRKMFEEHGEVRDIFLNKTKWFGFVLFKTHEQAEKALRALN 263
Query: 171 GHVLKGRSLKIRFA 184
G GR L +R+A
Sbjct: 264 GTEKNGRRLNVRYA 277
>gi|354477419|ref|XP_003500918.1| PREDICTED: splicing factor, proline- and glutamine-rich [Cricetulus
griseus]
Length = 433
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 179/274 (65%), Gaps = 9/274 (3%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 19 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 78
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 79 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 138
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 139 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 197
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FE+EY RWK L E+ + + E + K + + D+ + E E
Sbjct: 198 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEH 256
Query: 350 QA----EELKRRDEELMKK---HAEEMQLRLAQQ 376
QA ++L RR EEL + H++EMQ R Q
Sbjct: 257 QANLLRQDLMRRQEELRRMEELHSQEMQKRKEMQ 290
>gi|119627830|gb|EAX07425.1| splicing factor proline/glutamine-rich (polypyrimidine tract
binding protein associated), isoform CRA_e [Homo
sapiens]
Length = 607
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 178/274 (64%), Gaps = 9/274 (3%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 193 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 252
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 253 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 312
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 313 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 371
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FE+EY RWK L E+ + + E + K + + D+ + E E
Sbjct: 372 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEH 430
Query: 350 QA----EELKRRDEELMKK---HAEEMQLRLAQQ 376
QA ++L RR EEL + H +EMQ R Q
Sbjct: 431 QANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQ 464
>gi|119627828|gb|EAX07423.1| splicing factor proline/glutamine-rich (polypyrimidine tract
binding protein associated), isoform CRA_c [Homo
sapiens]
Length = 623
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 178/274 (64%), Gaps = 9/274 (3%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 293 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 352
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 353 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 412
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 413 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 471
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FE+EY RWK L E+ + + E + K + + D+ + E E
Sbjct: 472 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEH 530
Query: 350 QA----EELKRRDEELMKK---HAEEMQLRLAQQ 376
QA ++L RR EEL + H +EMQ R Q
Sbjct: 531 QANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQ 564
>gi|115497186|ref|NP_001068745.1| paraspeckle component 1 [Bos taurus]
gi|122145871|sp|Q1LZD9.1|PSPC1_BOVIN RecName: Full=Paraspeckle component 1
gi|94534895|gb|AAI16063.1| Paraspeckle component 1 [Bos taurus]
gi|296481730|tpg|DAA23845.1| TPA: paraspeckle component 1 [Bos taurus]
Length = 520
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 122/253 (48%), Positives = 170/253 (67%), Gaps = 12/253 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE+D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 75 YTQRCRLFVGNLPTDITEDDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 134
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +E+A+V+VD+RG +
Sbjct: 135 DGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATG 194
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G VEFA KP A +AL RC +G F LT + RPVIVEP+E D+ DGL E+ + +KT +++
Sbjct: 195 KGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM-QKTQQYH 253
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FEFEY SRWK L E+ E ++E R I ++K E EM
Sbjct: 254 KEREQPPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEKLEAEM--- 305
Query: 350 QAEELKRRDEELM 362
E R + +LM
Sbjct: 306 ---EAARHEHQLM 315
>gi|119627826|gb|EAX07421.1| splicing factor proline/glutamine-rich (polypyrimidine tract
binding protein associated), isoform CRA_a [Homo
sapiens]
Length = 611
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 178/274 (64%), Gaps = 9/274 (3%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 293 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 352
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 353 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 412
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 413 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 471
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FE+EY RWK L E+ + + E + K + + D+ + E E
Sbjct: 472 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEH 530
Query: 350 QA----EELKRRDEELMKK---HAEEMQLRLAQQ 376
QA ++L RR EEL + H +EMQ R Q
Sbjct: 531 QANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQ 564
>gi|380798819|gb|AFE71285.1| splicing factor, proline- and glutamine-rich, partial [Macaca
mulatta]
Length = 505
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 178/274 (64%), Gaps = 9/274 (3%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 91 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 150
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 151 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 210
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 211 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 269
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FE+EY RWK L E+ + + E + K + + D+ + E E
Sbjct: 270 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEH 328
Query: 350 QA----EELKRRDEELMKK---HAEEMQLRLAQQ 376
QA ++L RR EEL + H +EMQ R Q
Sbjct: 329 QANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQ 362
>gi|348571509|ref|XP_003471538.1| PREDICTED: splicing factor, proline- and glutamine-rich-like,
partial [Cavia porcellus]
Length = 442
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 178/274 (64%), Gaps = 9/274 (3%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 28 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 87
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 88 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 147
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 148 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 206
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FE+EY RWK L E+ + + E + K + + D+ + E E
Sbjct: 207 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEH 265
Query: 350 QA----EELKRRDEELMKK---HAEEMQLRLAQQ 376
QA ++L RR EEL + H +EMQ R Q
Sbjct: 266 QANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQ 299
>gi|426236529|ref|XP_004012220.1| PREDICTED: LOW QUALITY PROTEIN: paraspeckle component 1 [Ovis
aries]
Length = 483
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 122/253 (48%), Positives = 170/253 (67%), Gaps = 12/253 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE+D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 38 YTQRCRLFVGNLPTDITEDDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 97
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +E+A+V+VD+RG +
Sbjct: 98 DGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATG 157
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G VEFA KP A +AL RC +G F LT + RPVIVEP+E D+ DGL E+ + +KT +++
Sbjct: 158 KGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM-QKTQQYH 216
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FEFEY SRWK L E+ E ++E R I ++K E EM
Sbjct: 217 KEREQPPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEKLEAEM--- 268
Query: 350 QAEELKRRDEELM 362
E R + +LM
Sbjct: 269 ---EAARHEHQLM 278
>gi|440908573|gb|ELR58576.1| Splicing factor, proline- and glutamine-rich, partial [Bos
grunniens mutus]
Length = 432
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 178/274 (64%), Gaps = 9/274 (3%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 18 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 77
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 78 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 137
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 138 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 196
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FE+EY RWK L E+ + + E + K + + D+ + E E
Sbjct: 197 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEH 255
Query: 350 QA----EELKRRDEELMKK---HAEEMQLRLAQQ 376
QA ++L RR EEL + H +EMQ R Q
Sbjct: 256 QANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQ 289
>gi|301763529|ref|XP_002917193.1| PREDICTED: splicing factor, proline- and glutamine-rich-like
[Ailuropoda melanoleuca]
Length = 481
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 178/274 (64%), Gaps = 9/274 (3%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 67 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 126
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 127 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 186
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 187 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 245
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FE+EY RWK L E+ + + E + K + + D+ + E E
Sbjct: 246 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEH 304
Query: 350 QA----EELKRRDEELMKK---HAEEMQLRLAQQ 376
QA ++L RR EEL + H +EMQ R Q
Sbjct: 305 QANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQ 338
>gi|281349431|gb|EFB25015.1| hypothetical protein PANDA_005381 [Ailuropoda melanoleuca]
Length = 431
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 178/274 (64%), Gaps = 9/274 (3%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 17 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 76
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 77 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 136
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 137 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 195
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FE+EY RWK L E+ + + E + K + + D+ + E E
Sbjct: 196 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEH 254
Query: 350 QA----EELKRRDEELMKK---HAEEMQLRLAQQ 376
QA ++L RR EEL + H +EMQ R Q
Sbjct: 255 QANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQ 288
>gi|26383339|dbj|BAB30876.2| unnamed protein product [Mus musculus]
Length = 523
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 122/253 (48%), Positives = 169/253 (66%), Gaps = 12/253 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 77 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 136
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +E+A+V+VD+RG +
Sbjct: 137 DGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATG 196
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G VEFA KP A +AL RC +G F LT + RPVIVEP+E D+ DGL E+ + +KT +++
Sbjct: 197 KGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM-QKTQQYH 255
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FEFEY SRWK L E+ E ++E R I ++K E EM
Sbjct: 256 KEREQPPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEKLEAEM--- 307
Query: 350 QAEELKRRDEELM 362
E R + +LM
Sbjct: 308 ---EAARHEHQLM 317
>gi|402853931|ref|XP_003891641.1| PREDICTED: splicing factor, proline- and glutamine-rich [Papio
anubis]
Length = 525
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 178/274 (64%), Gaps = 9/274 (3%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 149 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 208
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 209 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 268
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 269 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 327
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FE+EY RWK L E+ + + E + K + + D+ + E E
Sbjct: 328 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEH 386
Query: 350 QA----EELKRRDEELMKK---HAEEMQLRLAQQ 376
QA ++L RR EEL + H +EMQ R Q
Sbjct: 387 QANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQ 420
>gi|395520745|ref|XP_003764484.1| PREDICTED: paraspeckle component 1 [Sarcophilus harrisii]
Length = 492
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 130/283 (45%), Positives = 177/283 (62%), Gaps = 31/283 (10%)
Query: 99 PPSEPQNK----------DIK---------FANNCRLYLGNIGGDITENDIIELFKPYGE 139
PPS PQ DIK + CRL++GN+ DITE D LF+ YGE
Sbjct: 47 PPSAPQEDHQEEEMGFTIDIKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGE 106
Query: 140 TQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCV 199
E+FIN+++ FGFIR++ + A+ AKA+LDG +LK R L+IRFA AA+ VKNL+ V
Sbjct: 107 PSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVV 166
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSL 259
+NELLE AF FG +E+A+V+VD+RG + +G VEFA KP A +AL RC +G F LT +
Sbjct: 167 SNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTP 226
Query: 260 RPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELY 319
RPVIVEP+E D+ DGL E+ + +KT +++K+R+ PRFA +FEFEY SRWK L E+
Sbjct: 227 RPVIVEPMEQFDDEDGLPEKLM-QKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEM- 284
Query: 320 EHETEMLRKELAQREIDRERQKAEWEMKERQAEELKRRDEELM 362
E ++E R I ++K E EM E R + +LM
Sbjct: 285 ----EKQQREQVDRNIREAKEKLEAEM------EAARHEHQLM 317
>gi|71043686|ref|NP_001020843.1| paraspeckle component 1 [Rattus norvegicus]
gi|123785742|sp|Q4KLH4.1|PSPC1_RAT RecName: Full=Paraspeckle component 1
gi|68534606|gb|AAH99204.1| Paraspeckle component 1 [Rattus norvegicus]
gi|149064062|gb|EDM14332.1| paraspeckle protein 1 [Rattus norvegicus]
Length = 522
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 122/253 (48%), Positives = 169/253 (66%), Gaps = 12/253 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 77 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 136
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +E+A+V+VD+RG +
Sbjct: 137 DGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATG 196
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G VEFA KP A +AL RC +G F LT + RPVIVEP+E D+ DGL E+ + +KT +++
Sbjct: 197 KGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM-QKTQQYH 255
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FEFEY SRWK L E+ E ++E R I ++K E EM
Sbjct: 256 KEREQPPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEKLEAEM--- 307
Query: 350 QAEELKRRDEELM 362
E R + +LM
Sbjct: 308 ---EAARHEHQLM 317
>gi|301780592|ref|XP_002925711.1| PREDICTED: paraspeckle component 1-like [Ailuropoda melanoleuca]
gi|281340049|gb|EFB15633.1| hypothetical protein PANDA_015253 [Ailuropoda melanoleuca]
Length = 521
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 122/253 (48%), Positives = 169/253 (66%), Gaps = 12/253 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 76 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 135
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +E+A+V+VD+RG +
Sbjct: 136 DGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATG 195
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G VEFA KP A +AL RC +G F LT + RPVIVEP+E D+ DGL E+ + +KT +++
Sbjct: 196 KGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM-QKTQQYH 254
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FEFEY SRWK L E+ E ++E R I ++K E EM
Sbjct: 255 KEREQPPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEKLEAEM--- 306
Query: 350 QAEELKRRDEELM 362
E R + +LM
Sbjct: 307 ---EAARHEHQLM 316
>gi|225543409|ref|NP_079958.3| paraspeckle component 1 [Mus musculus]
gi|81915016|sp|Q8R326.1|PSPC1_MOUSE RecName: Full=Paraspeckle component 1; AltName: Full=Paraspeckle
protein 1; Short=mPSP1
gi|20071204|gb|AAH26772.1| Paraspeckle protein 1 [Mus musculus]
gi|26373554|dbj|BAB27509.2| unnamed protein product [Mus musculus]
gi|74178197|dbj|BAE29885.1| unnamed protein product [Mus musculus]
gi|148704243|gb|EDL36190.1| paraspeckle protein 1 [Mus musculus]
Length = 523
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 122/253 (48%), Positives = 169/253 (66%), Gaps = 12/253 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 77 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 136
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +E+A+V+VD+RG +
Sbjct: 137 DGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATG 196
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G VEFA KP A +AL RC +G F LT + RPVIVEP+E D+ DGL E+ + +KT +++
Sbjct: 197 KGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM-QKTQQYH 255
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FEFEY SRWK L E+ E ++E R I ++K E EM
Sbjct: 256 KEREQPPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEKLEAEM--- 307
Query: 350 QAEELKRRDEELM 362
E R + +LM
Sbjct: 308 ---EAARHEHQLM 317
>gi|432100265|gb|ELK29037.1| Paraspeckle component 1 [Myotis davidii]
Length = 521
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 122/253 (48%), Positives = 169/253 (66%), Gaps = 12/253 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 76 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 135
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +E+A+V+VD+RG +
Sbjct: 136 DGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATG 195
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G VEFA KP A +AL RC +G F LT + RPVIVEP+E D+ DGL E+ + +KT +++
Sbjct: 196 KGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM-QKTQQYH 254
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FEFEY SRWK L E+ E ++E R I ++K E EM
Sbjct: 255 KKREQTPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEKLEAEM--- 306
Query: 350 QAEELKRRDEELM 362
E R + +LM
Sbjct: 307 ---EAARHEHQLM 316
>gi|194207707|ref|XP_001499377.2| PREDICTED: splicing factor, proline- and glutamine-rich-like [Equus
caballus]
Length = 519
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 178/274 (64%), Gaps = 9/274 (3%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 105 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 164
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 165 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 224
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 225 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 283
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FE+EY RWK L E+ + + E + K + + D+ + E E
Sbjct: 284 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEH 342
Query: 350 QA----EELKRRDEELMKK---HAEEMQLRLAQQ 376
QA ++L RR EEL + H +EMQ R Q
Sbjct: 343 QANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQ 376
>gi|344284518|ref|XP_003414013.1| PREDICTED: LOW QUALITY PROTEIN: paraspeckle component 1-like
[Loxodonta africana]
Length = 522
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 122/253 (48%), Positives = 169/253 (66%), Gaps = 12/253 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 77 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 136
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +E+A+V+VD+RG +
Sbjct: 137 DGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATG 196
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G VEFA KP A +AL RC +G F LT + RPVIVEP+E D+ DGL E+ + +KT +++
Sbjct: 197 KGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM-QKTQQYH 255
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FEFEY SRWK L E+ E ++E R I ++K E EM
Sbjct: 256 KEREQPPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEKLEAEM--- 307
Query: 350 QAEELKRRDEELM 362
E R + +LM
Sbjct: 308 ---EAARHEHQLM 317
>gi|126327540|ref|XP_001374805.1| PREDICTED: paraspeckle component 1 [Monodelphis domestica]
Length = 522
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 130/283 (45%), Positives = 177/283 (62%), Gaps = 31/283 (10%)
Query: 99 PPSEPQNK----------DIK---------FANNCRLYLGNIGGDITENDIIELFKPYGE 139
PPS PQ DIK + CRL++GN+ DITE D LF+ YGE
Sbjct: 47 PPSAPQEDHQEEEMGFTIDIKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGE 106
Query: 140 TQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCV 199
E+FIN+++ FGFIR++ + A+ AKA+LDG +LK R L+IRFA AA+ VKNL+ V
Sbjct: 107 PSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVV 166
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSL 259
+NELLE AF FG +E+A+V+VD+RG + +G VEFA KP A +AL RC +G F LT +
Sbjct: 167 SNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTP 226
Query: 260 RPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELY 319
RPVIVEP+E D+ DGL E+ + +KT +++K+R+ PRFA +FEFEY SRWK L E+
Sbjct: 227 RPVIVEPMEQFDDEDGLPEKLM-QKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEM- 284
Query: 320 EHETEMLRKELAQREIDRERQKAEWEMKERQAEELKRRDEELM 362
E ++E R I ++K E EM E R + +LM
Sbjct: 285 ----EKQQREQVDRNIREAKEKLEAEM------EAARHEHQLM 317
>gi|29881667|gb|AAH51192.1| Splicing factor proline/glutamine-rich (polypyrimidine tract
binding protein associated) [Homo sapiens]
Length = 707
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 129/274 (47%), Positives = 177/274 (64%), Gaps = 9/274 (3%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 293 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 352
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 353 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 412
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 413 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 471
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ RFA +FE+EY RWK L E+ + + E + K + + D+ + E E
Sbjct: 472 KERETPTRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEH 530
Query: 350 QA----EELKRRDEELMKK---HAEEMQLRLAQQ 376
QA ++L RR EEL + H +EMQ R Q
Sbjct: 531 QANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQ 564
>gi|390463930|ref|XP_002748921.2| PREDICTED: paraspeckle component 1 isoform 2 [Callithrix jacchus]
Length = 540
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 122/253 (48%), Positives = 169/253 (66%), Gaps = 12/253 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 95 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 154
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +E+A+V+VD+RG +
Sbjct: 155 DGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATG 214
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G VEFA KP A +AL RC +G F LT + RPVIVEP+E D+ DGL E+ + +KT +++
Sbjct: 215 KGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM-QKTQQYH 273
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FEFEY SRWK L E+ E ++E R I ++K E EM
Sbjct: 274 KEREQPPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEKLEAEM--- 325
Query: 350 QAEELKRRDEELM 362
E R + +LM
Sbjct: 326 ---EAARHEHQLM 335
>gi|149524110|ref|XP_001513533.1| PREDICTED: splicing factor, proline- and glutamine-rich-like,
partial [Ornithorhynchus anatinus]
Length = 430
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 148/371 (39%), Positives = 211/371 (56%), Gaps = 46/371 (12%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DIT+ D LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 17 YTQRCRLFVGNLPADITDEDFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 76
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 77 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 136
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 137 RGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 195
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHEL---------------------------YEHE 322
K+R+ PRFA +FEFEY RWK L E+ +EH+
Sbjct: 196 KERENPPRFAQHGTFEFEYSQRWKSLDEMEKQQRDQVEKNMKDAKDKLESEMEDAYHEHQ 255
Query: 323 TEMLRKELAQR--EIDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDL 380
+LR++L +R E+ R + EM++R+ E++ R EE ++ EEM +R + EE +
Sbjct: 256 ANLLRQDLMRRQEELRRMEELHNQEMQKRK--EMQLRQEEERRRREEEMMIRQREMEEQM 313
Query: 381 RRRQNDNSMFL-----------VEQQQGRGGSGGYGSPGQAY---GNAIIDFEALAAAVG 426
RR++ ++ + + YGS GQ + G I +EA
Sbjct: 314 RRQREESYSRMGYMDPRERDMRMGGGGAMNMGDPYGSGGQKFPPLGGGGIGYEANPGVPP 373
Query: 427 NAVVGNVTGVD 437
A+ G++ G D
Sbjct: 374 TAMTGSMMGSD 384
>gi|355714147|gb|AES04909.1| paraspeckle component 1 [Mustela putorius furo]
Length = 449
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 122/253 (48%), Positives = 169/253 (66%), Gaps = 12/253 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 5 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 64
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +E+A+V+VD+RG +
Sbjct: 65 DGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATG 124
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G VEFA KP A +AL RC +G F LT + RPVIVEP+E D+ DGL E+ + +KT +++
Sbjct: 125 KGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM-QKTQQYH 183
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FEFEY SRWK L E+ E ++E R I ++K E EM
Sbjct: 184 KEREQPPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEKLEAEM--- 235
Query: 350 QAEELKRRDEELM 362
E R + +LM
Sbjct: 236 ---EAARHEHQLM 245
>gi|395848194|ref|XP_003796741.1| PREDICTED: paraspeckle component 1 [Otolemur garnettii]
Length = 523
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 122/253 (48%), Positives = 169/253 (66%), Gaps = 12/253 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 78 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 137
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +E+A+V+VD+RG +
Sbjct: 138 DGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATG 197
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G VEFA KP A +AL RC +G F LT + RPVIVEP+E D+ DGL E+ + +KT +++
Sbjct: 198 KGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM-QKTQQYH 256
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FEFEY SRWK L E+ E ++E R I ++K E EM
Sbjct: 257 KEREQPPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEKLEAEM--- 308
Query: 350 QAEELKRRDEELM 362
E R + +LM
Sbjct: 309 ---EAARHEHQLM 318
>gi|332248530|ref|XP_003273416.1| PREDICTED: splicing factor, proline- and glutamine-rich [Nomascus
leucogenys]
Length = 600
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 178/274 (64%), Gaps = 9/274 (3%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 186 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 245
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 246 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 305
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 306 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 364
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FE+EY RWK L E+ + + E + K + + D+ + E E
Sbjct: 365 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEH 423
Query: 350 QA----EELKRRDEELMKK---HAEEMQLRLAQQ 376
QA ++L RR EEL + H +EMQ R Q
Sbjct: 424 QANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQ 457
>gi|410947109|ref|XP_003980296.1| PREDICTED: paraspeckle component 1 [Felis catus]
Length = 521
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 122/253 (48%), Positives = 169/253 (66%), Gaps = 12/253 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 76 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 135
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +E+A+V+VD+RG +
Sbjct: 136 DGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATG 195
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G VEFA KP A +AL RC +G F LT + RPVIVEP+E D+ DGL E+ + +KT +++
Sbjct: 196 KGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM-QKTQQYH 254
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FEFEY SRWK L E+ E ++E R I ++K E EM
Sbjct: 255 KEREQPPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEKLEAEM--- 306
Query: 350 QAEELKRRDEELM 362
E R + +LM
Sbjct: 307 ---EAARHEHQLM 316
>gi|354479768|ref|XP_003502081.1| PREDICTED: paraspeckle component 1-like [Cricetulus griseus]
gi|344255419|gb|EGW11523.1| Paraspeckle component 1 [Cricetulus griseus]
Length = 522
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 122/253 (48%), Positives = 169/253 (66%), Gaps = 12/253 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 77 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 136
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +E+A+V+VD+RG +
Sbjct: 137 DGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATG 196
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G VEFA KP A +AL RC +G F LT + RPVIVEP+E D+ DGL E+ + +KT +++
Sbjct: 197 KGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM-QKTQQYH 255
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FEFEY SRWK L E+ E ++E R I ++K E EM
Sbjct: 256 KEREQPPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEKLEAEM--- 307
Query: 350 QAEELKRRDEELM 362
E R + +LM
Sbjct: 308 ---EAARHEHQLM 317
>gi|296207443|ref|XP_002750719.1| PREDICTED: splicing factor, proline- and glutamine-rich [Callithrix
jacchus]
Length = 473
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 178/274 (64%), Gaps = 9/274 (3%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 59 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 118
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 119 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 178
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 179 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 237
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FE+EY RWK L E+ + + E + K + + D+ + E E
Sbjct: 238 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEH 296
Query: 350 QA----EELKRRDEELMKK---HAEEMQLRLAQQ 376
QA ++L RR EEL + H +EMQ R Q
Sbjct: 297 QANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQ 330
>gi|449269723|gb|EMC80474.1| Paraspeckle component 1 [Columba livia]
Length = 525
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 121/253 (47%), Positives = 168/253 (66%), Gaps = 12/253 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 79 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 138
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +ERA+V+VD+RG +
Sbjct: 139 DGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVERAVVVVDDRGRATG 198
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G VEFA KP A +AL RC++G F LT + RPV+VEP+E D+ DGL E+ + +KT +++
Sbjct: 199 KGFVEFAAKPPARKALERCSDGAFLLTTTPRPVVVEPMEQFDDEDGLPEKLM-QKTQQYH 257
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K + PRFA +FEFEY SRWK L E+ E ++E R I ++K E EM
Sbjct: 258 KTAKFPPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEKLEAEM--- 309
Query: 350 QAEELKRRDEELM 362
E R + +LM
Sbjct: 310 ---EAARHEHQLM 319
>gi|109240550|ref|NP_001035879.1| paraspeckle component 1 [Homo sapiens]
gi|114648865|ref|XP_001144461.1| PREDICTED: paraspeckle component 1 isoform 1 [Pan troglodytes]
gi|74762636|sp|Q8WXF1.1|PSPC1_HUMAN RecName: Full=Paraspeckle component 1; AltName: Full=Paraspeckle
protein 1
gi|18104577|gb|AAL59601.1|AF448795_1 paraspeckle protein 1 alpha isoform [Homo sapiens]
gi|119628637|gb|EAX08232.1| paraspeckle component 1, isoform CRA_a [Homo sapiens]
gi|410207394|gb|JAA00916.1| paraspeckle component 1 [Pan troglodytes]
gi|410253110|gb|JAA14522.1| paraspeckle component 1 [Pan troglodytes]
gi|410294364|gb|JAA25782.1| paraspeckle component 1 [Pan troglodytes]
gi|410350909|gb|JAA42058.1| paraspeckle component 1 [Pan troglodytes]
Length = 523
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 122/253 (48%), Positives = 169/253 (66%), Gaps = 12/253 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 78 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 137
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +E+A+V+VD+RG +
Sbjct: 138 DGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATG 197
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G VEFA KP A +AL RC +G F LT + RPVIVEP+E D+ DGL E+ + +KT +++
Sbjct: 198 KGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM-QKTQQYH 256
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FEFEY SRWK L E+ E ++E R I ++K E EM
Sbjct: 257 KEREQPPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEKLEAEM--- 308
Query: 350 QAEELKRRDEELM 362
E R + +LM
Sbjct: 309 ---EAARHEHQLM 318
>gi|348583345|ref|XP_003477433.1| PREDICTED: paraspeckle component 1-like [Cavia porcellus]
Length = 520
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 122/253 (48%), Positives = 169/253 (66%), Gaps = 12/253 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 75 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 134
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +E+A+V+VD+RG +
Sbjct: 135 DGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATG 194
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G VEFA KP A +AL RC +G F LT + RPVIVEP+E D+ DGL E+ + +KT +++
Sbjct: 195 KGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM-QKTQQYH 253
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FEFEY SRWK L E+ E ++E R I ++K E EM
Sbjct: 254 KEREQPPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEKLEAEM--- 305
Query: 350 QAEELKRRDEELM 362
E R + +LM
Sbjct: 306 ---EAARHEHQLM 315
>gi|417402278|gb|JAA47991.1| Putative rna-binding protein p54nrb rrm superfamily [Desmodus
rotundus]
Length = 523
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 122/253 (48%), Positives = 169/253 (66%), Gaps = 12/253 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 78 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 137
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +E+A+V+VD+RG +
Sbjct: 138 DGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATG 197
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G VEFA KP A +AL RC +G F LT + RPVIVEP+E D+ DGL E+ + +KT +++
Sbjct: 198 KGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM-QKTQQYH 256
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FEFEY SRWK L E+ E ++E R I ++K E EM
Sbjct: 257 KEREQPPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEKLEAEM--- 308
Query: 350 QAEELKRRDEELM 362
E R + +LM
Sbjct: 309 ---EAARHEHQLM 318
>gi|397526252|ref|XP_003833047.1| PREDICTED: paraspeckle component 1 isoform 2 [Pan paniscus]
Length = 470
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 122/253 (48%), Positives = 169/253 (66%), Gaps = 12/253 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 18 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 77
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +E+A+V+VD+RG +
Sbjct: 78 DGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATG 137
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G VEFA KP A +AL RC +G F LT + RPVIVEP+E D+ DGL E+ + +KT +++
Sbjct: 138 KGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM-QKTQQYH 196
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FEFEY SRWK L E+ E ++E R I ++K E EM
Sbjct: 197 KEREQPPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEKLEAEM--- 248
Query: 350 QAEELKRRDEELM 362
E R + +LM
Sbjct: 249 ---EAARHEHQLM 258
>gi|403293319|ref|XP_003937665.1| PREDICTED: splicing factor, proline- and glutamine-rich-like
[Saimiri boliviensis boliviensis]
Length = 441
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 178/274 (64%), Gaps = 9/274 (3%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 27 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 86
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 87 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 146
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 147 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 205
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FE+EY RWK L E+ + + E + K + + D+ + E E
Sbjct: 206 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEH 264
Query: 350 QA----EELKRRDEELMKK---HAEEMQLRLAQQ 376
QA ++L RR EEL + H +EMQ R Q
Sbjct: 265 QANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQ 298
>gi|351714180|gb|EHB17099.1| Splicing factor, proline- and glutamine-rich [Heterocephalus
glaber]
Length = 457
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 178/274 (64%), Gaps = 9/274 (3%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 43 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 102
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 103 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 162
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 163 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 221
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FE+EY RWK L E+ + + E + K + + D+ + E E
Sbjct: 222 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEH 280
Query: 350 QA----EELKRRDEELMKK---HAEEMQLRLAQQ 376
QA ++L RR EEL + H +EMQ R Q
Sbjct: 281 QANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQ 314
>gi|194376978|dbj|BAG63050.1| unnamed protein product [Homo sapiens]
Length = 463
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 122/253 (48%), Positives = 169/253 (66%), Gaps = 12/253 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 18 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 77
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +E+A+V+VD+RG +
Sbjct: 78 DGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATG 137
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G VEFA KP A +AL RC +G F LT + RPVIVEP+E D+ DGL E+ + +KT +++
Sbjct: 138 KGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM-QKTQQYH 196
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FEFEY SRWK L E+ E ++E R I ++K E EM
Sbjct: 197 KEREQPPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEKLEAEM--- 248
Query: 350 QAEELKRRDEELM 362
E R + +LM
Sbjct: 249 ---EAARHEHQLM 258
>gi|397526250|ref|XP_003833046.1| PREDICTED: paraspeckle component 1 isoform 1 [Pan paniscus]
Length = 463
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 122/253 (48%), Positives = 169/253 (66%), Gaps = 12/253 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 18 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 77
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +E+A+V+VD+RG +
Sbjct: 78 DGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATG 137
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G VEFA KP A +AL RC +G F LT + RPVIVEP+E D+ DGL E+ + +KT +++
Sbjct: 138 KGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM-QKTQQYH 196
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FEFEY SRWK L E+ E ++E R I ++K E EM
Sbjct: 197 KEREQPPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEKLEAEM--- 248
Query: 350 QAEELKRRDEELM 362
E R + +LM
Sbjct: 249 ---EAARHEHQLM 258
>gi|349605864|gb|AEQ00956.1| Splicing factor, proline- and glutamine-rich-like protein, partial
[Equus caballus]
Length = 374
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 178/274 (64%), Gaps = 9/274 (3%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 5 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 64
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 65 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 124
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 125 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 183
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FE+EY RWK L E+ + + E + K + + D+ + E E
Sbjct: 184 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEH 242
Query: 350 QA----EELKRRDEELMKK---HAEEMQLRLAQQ 376
QA ++L RR EEL + H +EMQ R Q
Sbjct: 243 QANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQ 276
>gi|383872565|ref|NP_001244831.1| paraspeckle component 1 [Macaca mulatta]
gi|380814340|gb|AFE79044.1| paraspeckle component 1 [Macaca mulatta]
gi|383419683|gb|AFH33055.1| paraspeckle component 1 [Macaca mulatta]
gi|384948008|gb|AFI37609.1| paraspeckle component 1 [Macaca mulatta]
Length = 523
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 122/253 (48%), Positives = 169/253 (66%), Gaps = 12/253 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 78 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 137
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +E+A+V+VD+RG +
Sbjct: 138 DGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATG 197
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G VEFA KP A +AL RC +G F LT + RPVIVEP+E D+ DGL E+ + +KT +++
Sbjct: 198 KGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM-QKTQQYH 256
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FEFEY SRWK L E+ E ++E R I ++K E EM
Sbjct: 257 KEREQPPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEKLEAEM--- 308
Query: 350 QAEELKRRDEELM 362
E R + +LM
Sbjct: 309 ---EAARHEHQLM 318
>gi|443702054|gb|ELU00216.1| hypothetical protein CAPTEDRAFT_169883 [Capitella teleta]
Length = 431
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 138/313 (44%), Positives = 195/313 (62%), Gaps = 27/313 (8%)
Query: 91 IQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM 150
+GP ++P K K+ CRL+LGN+ ++TE+D + F P+GE E+F+N K
Sbjct: 6 FRGPPDNVPAIPLSEK--KYTGRCRLFLGNLPNEMTEDDFKDFFTPHGEFTEVFVNPSKG 63
Query: 151 FGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGV 210
FGFIRMD + NA+KAKA +DG KGR+L+ RFA AA+KV +L+ VTNE LE AF +
Sbjct: 64 FGFIRMDTRSNAEKAKAAIDGINHKGRTLRCRFATHGAALKVLHLSPHVTNEKLEEAFSM 123
Query: 211 FGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELT 270
FG++ERA+VIVD+RG S EGIVEFARK A++R EG F L + +P++VEP E
Sbjct: 124 FGELERAVVIVDDRGKSTGEGIVEFARKSGFNAAMKRINEGVFLLGANPKPIVVEPFEPK 183
Query: 271 DEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL 330
D+ DGL +R K+ E+ K+R+ PRF SFEFE G++WK+L++ + + E L+
Sbjct: 184 DDNDGLQDR-FTSKSNEYMKEREQPPRFCPQGSFEFEIGNKWKELYQNFRKQEENLK--- 239
Query: 331 AQREIDRERQKAEWEMK----ERQAEELKRRDEELMKKHAE----------EMQLRLAQ- 375
R+ D K E+EM+ + QA+ L+ ++LM+K E EMQ RL Q
Sbjct: 240 --RQFDEAALKLEFEMESAAMDHQAQMLR---QDLMRKQEELRMLEEQQQMEMQRRLEQR 294
Query: 376 -QEEDLRRRQNDN 387
Q ED +RRQ D+
Sbjct: 295 RQMEDQQRRQEDD 307
>gi|327286625|ref|XP_003228030.1| PREDICTED: splicing factor, proline- and glutamine-rich-like
[Anolis carolinensis]
Length = 612
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 128/270 (47%), Positives = 174/270 (64%), Gaps = 12/270 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 200 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 259
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ ++NL+ V+NELLE AF FG IERAIVIVD+RG S
Sbjct: 260 DDIPMRGRQLRVRFATHAAALSIRNLSPYVSNELLEEAFSQFGPIERAIVIVDDRGRSTG 319
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 320 KGIVEFASKPAARKAFERCTEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 378
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FE+EY RWK L E+ + + + + K + + D+ + E E
Sbjct: 379 KERETPPRFAQPGTFEYEYSQRWKSLDEMEKQQRDQVEKNMKDAK-DKLESEMEDAYHEH 437
Query: 350 QAEELK-------RRDEELMKKHAEEMQLR 372
QA L+ RR EEL H +EMQ R
Sbjct: 438 QANLLRQGDRKNWRRMEEL---HNQEMQKR 464
>gi|148698323|gb|EDL30270.1| mCG10912, isoform CRA_c [Mus musculus]
Length = 533
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 131/276 (47%), Positives = 182/276 (65%), Gaps = 13/276 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 245 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 304
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 305 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 364
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 365 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 423
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL--AQREIDRERQKAEWEMK 347
K+R+ PRFA +FE+EY RWK L E+ + + E + K + A+ +++ E + A
Sbjct: 424 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDA---YH 480
Query: 348 ERQA----EELKRRDEELMKK---HAEEMQLRLAQQ 376
E QA ++L RR EEL + H++EMQ R Q
Sbjct: 481 EHQANLLRQDLMRRQEELRRMEELHSQEMQKRKEMQ 516
>gi|74141372|dbj|BAE35969.1| unnamed protein product [Mus musculus]
Length = 466
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 122/253 (48%), Positives = 169/253 (66%), Gaps = 12/253 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 77 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 136
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +E+A+V+VD+RG +
Sbjct: 137 DGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATG 196
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G VEFA KP A +AL RC +G F LT + RPVIVEP+E D+ DGL E+ + +KT +++
Sbjct: 197 KGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM-QKTQQYH 255
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FEFEY SRWK L E+ E ++E R I ++K E EM
Sbjct: 256 KEREQPPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEKLEAEM--- 307
Query: 350 QAEELKRRDEELM 362
E R + +LM
Sbjct: 308 ---EAARHEHQLM 317
>gi|410966928|ref|XP_003989978.1| PREDICTED: splicing factor, proline- and glutamine-rich [Felis
catus]
Length = 560
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 178/274 (64%), Gaps = 9/274 (3%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 146 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 205
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 206 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 265
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 266 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 324
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FE+EY RWK L E+ + + E + K + + D+ + E E
Sbjct: 325 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEH 383
Query: 350 QA----EELKRRDEELMKK---HAEEMQLRLAQQ 376
QA ++L RR EEL + H +EMQ R Q
Sbjct: 384 QANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQ 417
>gi|350590070|ref|XP_003131163.3| PREDICTED: paraspeckle component 1 [Sus scrofa]
Length = 472
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 122/253 (48%), Positives = 170/253 (67%), Gaps = 12/253 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE+D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 76 YTQRCRLFVGNLPTDITEDDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 135
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +E+A+V+VD+RG +
Sbjct: 136 DGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATG 195
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G VEFA KP A +AL RC +G F LT + RPVIVEP+E D+ DGL E+ + +KT +++
Sbjct: 196 KGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM-QKTQQYH 254
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FEFEY SRWK L E+ E ++E R I ++K E EM
Sbjct: 255 KEREQPPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEKLEAEM--- 306
Query: 350 QAEELKRRDEELM 362
E R + +LM
Sbjct: 307 ---EAARHEHQLM 316
>gi|387017502|gb|AFJ50869.1| Paraspeckle component 1-like [Crotalus adamanteus]
Length = 483
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 122/253 (48%), Positives = 168/253 (66%), Gaps = 12/253 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 79 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 138
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +ERA+V+VD+RG +
Sbjct: 139 DGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVERAVVVVDDRGRATG 198
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G VEFA KP A +AL RC +G F LT + RPV+VEP+E D DGL E+ + +KT +++
Sbjct: 199 KGFVEFAAKPPARKALERCGDGAFLLTTTPRPVLVEPMEQFDNEDGLPEKLM-QKTQQYH 257
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FEFEY SRWK L E+ E ++E R I ++K E EM
Sbjct: 258 KEREQPPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEKLEAEM--- 309
Query: 350 QAEELKRRDEELM 362
E R + +LM
Sbjct: 310 ---EAARHEHQLM 319
>gi|49618969|gb|AAT68069.1| proline/glutamine rich splicing factor [Danio rerio]
Length = 638
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 127/274 (46%), Positives = 180/274 (65%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE + +LF YGE E+FIN+ K FGFIR++ + A+ AKA+L
Sbjct: 235 YTQRCRLFIGNLPNDITEPEFRKLFAKYGEPSEIFINQGKGFGFIRLESRALAEVAKAEL 294
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D +KGR L++RFA +AA+ V+NL+ V+NELLE AF FG +ERAIVIVD+RG S
Sbjct: 295 DDTPMKGRPLRVRFATHSAALSVRNLSPFVSNELLEEAFSQFGLVERAIVIVDDRGRSTG 354
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +A+ R ++G F LT S RP++VE LE D+ DGL E+ + +K P +
Sbjct: 355 KGIVEFSSKPAARKAMDRISDGVFLLTSSPRPIVVELLEQYDDEDGLPEK-LAQKNPSYQ 413
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEM--- 346
K+R+ PRFA +FE+EY RWK L E+ + + + + K + + R+K E EM
Sbjct: 414 KEREQPPRFARPGTFEYEYSQRWKSLDEMEKQQRQQVEKNICE-----AREKLETEMDDA 468
Query: 347 -KERQA----EELKRRDEELMKK---HAEEMQLR 372
E QA ++L RR EEL + H++EMQ R
Sbjct: 469 YHEHQANMLRQDLLRRQEELRRMEELHSQEMQKR 502
>gi|42415509|ref|NP_963873.1| non-POU domain-containing octamer-binding protein [Danio rerio]
gi|28422768|gb|AAH46880.1| Non-POU domain containing, octamer-binding [Danio rerio]
Length = 441
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 128/271 (47%), Positives = 178/271 (65%), Gaps = 11/271 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ RL++GN+ TE D+ +LF YG+ E+FINK++ FGFIR++ K AD AKA+L
Sbjct: 68 YTQRSRLFVGNLPAGTTEEDVEKLFSKYGKASEIFINKDRGFGFIRLETKTLADIAKAEL 127
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D + +GR +++RFA AA+ VKNL V+NELLE AF +FG IERAIVIVD+RG
Sbjct: 128 DDTIFRGRQIRVRFATHGAALTVKNLPQFVSNELLEEAFSMFGPIERAIVIVDDRGRPTG 187
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KP+A +AL RC +G F LT RPV +EP+E DE +GL ER IN K P ++
Sbjct: 188 KGIVEFANKPSARKALDRCGDGAFLLTAFPRPVTIEPMEQLDEEEGLPERLIN-KNPVYH 246
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL--AQREIDRERQKAEWE-- 345
K+R+ PRFA SFE+EY RWK L E+ + + E + + + A+ +++ E + A E
Sbjct: 247 KEREQPPRFAQPGSFEYEYAMRWKALMEMEKQQYEQVDRNIKEAKEKLETELEAARHEHQ 306
Query: 346 -MKERQAEELKRRDEELMK---KHAEEMQLR 372
M RQ +L RR EEL + H++E+Q R
Sbjct: 307 VMLMRQ--DLLRRQEELRRMEEAHSQEVQKR 335
>gi|189230206|ref|NP_001121427.1| splicing factor proline/glutamine-rich [Xenopus (Silurana)
tropicalis]
gi|183986326|gb|AAI66167.1| LOC100158518 protein [Xenopus (Silurana) tropicalis]
Length = 659
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 127/274 (46%), Positives = 180/274 (65%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DI +++ +LF+ YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 242 YTQRCRLFVGNLPTDINDDEFKKLFEKYGEPGEVFINKSKGFGFIKLETRALAEIAKAEL 301
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA +AA+ V+NL+ V+NELLE AF FG +ERA+VIVD+RG S
Sbjct: 302 DDLPMRGRQLRVRFATHSAALSVRNLSPFVSNELLEEAFSQFGPVERAVVIVDDRGRSTG 361
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +AL RC +G F LT + PVIVEPLE D+ DGL E+ + +K +
Sbjct: 362 KGIVEFAAKPAARKALERCTDGVFLLTTTPMPVIVEPLEQFDDEDGLPEK-LAQKNHLYQ 420
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMK-- 347
K+R+V PRFA +FEFEY RWK L E+ + + + K + + ++K E EM+
Sbjct: 421 KEREVPPRFAQHGTFEFEYSQRWKSLDEMEKQQRAQVEKNMKE-----AKEKLESEMEDA 475
Query: 348 --ERQA----EELKRRDEELMKK---HAEEMQLR 372
E QA ++L RR EEL + H +EMQ R
Sbjct: 476 YHEHQANLLRQDLMRRQEELRRMEELHNQEMQKR 509
>gi|47086115|ref|NP_998443.1| splicing factor, proline- and glutamine-rich [Danio rerio]
gi|46250392|gb|AAH68428.1| Splicing factor proline/glutamine rich (polypyrimidine tract
binding protein associated) [Danio rerio]
Length = 619
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 127/274 (46%), Positives = 180/274 (65%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE + +LF YGE E+FIN+ K FGFIR++ + A+ AKA+L
Sbjct: 216 YTQRCRLFIGNLPNDITEPEFRKLFAKYGEPSEIFINQGKGFGFIRLESRALAEVAKAEL 275
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D +KGR L++RFA +AA+ V+NL+ V+NELLE AF FG +ERAIVIVD+RG S
Sbjct: 276 DDTPMKGRPLRVRFATHSAALSVRNLSPFVSNELLEEAFSQFGLVERAIVIVDDRGRSTG 335
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +A+ R ++G F LT S RP++VE LE D+ DGL E+ + +K P +
Sbjct: 336 KGIVEFSSKPAARKAMDRISDGVFLLTSSPRPIVVELLEQYDDEDGLPEK-LAQKNPSYQ 394
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEM--- 346
K+R+ PRFA +FE+EY RWK L E+ + + + + K + + R+K E EM
Sbjct: 395 KEREQPPRFARPGTFEYEYSQRWKSLDEMEKQQRQQVEKNICE-----AREKLETEMDDA 449
Query: 347 -KERQA----EELKRRDEELMKK---HAEEMQLR 372
E QA ++L RR EEL + H++EMQ R
Sbjct: 450 YHEHQANMLRQDLLRRQEELRRMEELHSQEMQKR 483
>gi|10442545|gb|AAG17365.1| PTB-associated splicing factor [Mus musculus]
Length = 383
Score = 234 bits (598), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 178/274 (64%), Gaps = 9/274 (3%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 88 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 147
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 148 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 207
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 208 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 266
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FE+EY RWK L E+ + + E + K + + D+ + E E
Sbjct: 267 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEH 325
Query: 350 QA----EELKRRDEELMKK---HAEEMQLRLAQQ 376
QA ++L RR EEL + H +EMQ R Q
Sbjct: 326 QANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQ 359
>gi|431903129|gb|ELK09305.1| Paraspeckle component 1 [Pteropus alecto]
Length = 591
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 126/277 (45%), Positives = 183/277 (66%), Gaps = 8/277 (2%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 145 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 204
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +E+A+V+VD+RG +
Sbjct: 205 DGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATG 264
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G VEFA KP A +AL RC +G F LT + RPVIVEP+E D+ DGL E+ + +KT +++
Sbjct: 265 KGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM-QKTQQYH 323
Query: 290 K-QRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMK- 347
K +++ PRFA +FEFEY SRWK L E+ E ++E R I ++K E EM+
Sbjct: 324 KWKKKQPPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEKLEAEMEA 378
Query: 348 ERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQ 384
R +L ++LM++ E +L + +E +R+Q
Sbjct: 379 ARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQ 415
>gi|395745144|ref|XP_002824106.2| PREDICTED: paraspeckle component 1-like, partial [Pongo abelii]
Length = 385
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 122/253 (48%), Positives = 169/253 (66%), Gaps = 12/253 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 76 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 135
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +E+A+V+VD+RG +
Sbjct: 136 DGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATG 195
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G VEFA KP A +AL RC +G F LT + RPVIVEP+E D+ DGL E+ + +KT +++
Sbjct: 196 KGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM-QKTQQYH 254
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FEFEY SRWK L E+ E ++E R I ++K E EM
Sbjct: 255 KEREQPPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEKLEAEM--- 306
Query: 350 QAEELKRRDEELM 362
E R + +LM
Sbjct: 307 ---EAARHEHQLM 316
>gi|18104579|gb|AAL59602.1|AF449627_1 paraspeckle protein 1 beta isoform [Homo sapiens]
gi|33878392|gb|AAH14184.2| PSPC1 protein [Homo sapiens]
gi|119628638|gb|EAX08233.1| paraspeckle component 1, isoform CRA_b [Homo sapiens]
gi|119628639|gb|EAX08234.1| paraspeckle component 1, isoform CRA_b [Homo sapiens]
gi|343961879|dbj|BAK62527.1| paraspeckle protein 1 isoform alpha [Pan troglodytes]
Length = 393
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 122/253 (48%), Positives = 169/253 (66%), Gaps = 12/253 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 78 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 137
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +E+A+V+VD+RG +
Sbjct: 138 DGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATG 197
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G VEFA KP A +AL RC +G F LT + RPVIVEP+E D+ DGL E+ + +KT +++
Sbjct: 198 KGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM-QKTQQYH 256
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FEFEY SRWK L E+ E ++E R I ++K E EM
Sbjct: 257 KEREQPPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEKLEAEM--- 308
Query: 350 QAEELKRRDEELM 362
E R + +LM
Sbjct: 309 ---EAARHEHQLM 318
>gi|90075324|dbj|BAE87342.1| unnamed protein product [Macaca fascicularis]
Length = 357
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 122/253 (48%), Positives = 169/253 (66%), Gaps = 12/253 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 42 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 101
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +E+A+V+VD+RG +
Sbjct: 102 DGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATG 161
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G VEFA KP A +AL RC +G F LT + RPVIVEP+E D+ DGL E+ + +KT +++
Sbjct: 162 KGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM-QKTQQYH 220
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FEFEY SRWK L E+ E ++E R I ++K E EM
Sbjct: 221 KEREQPPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEKLEAEM--- 272
Query: 350 QAEELKRRDEELM 362
E R + +LM
Sbjct: 273 ---EAARHEHQLM 282
>gi|189442732|gb|AAI67693.1| Unknown (protein for IMAGE:7574372) [Xenopus (Silurana) tropicalis]
Length = 551
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/274 (46%), Positives = 180/274 (65%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DI +++ +LF+ YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 134 YTQRCRLFVGNLPTDINDDEFNKLFEKYGEPGEVFINKSKGFGFIKLETRALAEIAKAEL 193
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA +AA+ V+NL+ V+NELLE AF FG +ERA+VIVD+RG S
Sbjct: 194 DDLPMRGRQLRVRFATHSAALSVRNLSPFVSNELLEEAFSQFGPVERAVVIVDDRGRSTG 253
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +AL RC +G F LT + PVIVEPLE D+ DGL E+ + +K +
Sbjct: 254 KGIVEFAAKPAARKALERCTDGVFLLTTTPMPVIVEPLEQFDDEDGLPEK-LAQKNHLYQ 312
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMK-- 347
K+R+V PRFA +FEFEY RWK L E+ + + + K + + ++K E EM+
Sbjct: 313 KEREVPPRFAQHGTFEFEYSQRWKSLDEMEKQQRAQVEKNMKE-----AKEKLESEMEDA 367
Query: 348 --ERQA----EELKRRDEELMKK---HAEEMQLR 372
E QA ++L RR EEL + H +EMQ R
Sbjct: 368 YHEHQANLLRQDLMRRQEELRRMEELHNQEMQKR 401
>gi|7023323|dbj|BAA91924.1| unnamed protein product [Homo sapiens]
gi|48146661|emb|CAG33553.1| PSPC1 [Homo sapiens]
gi|123984519|gb|ABM83605.1| paraspeckle component 1 [synthetic construct]
gi|123998493|gb|ABM86848.1| paraspeckle component 1 [synthetic construct]
gi|261860072|dbj|BAI46558.1| paraspeckle component 1 [synthetic construct]
Length = 357
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 122/253 (48%), Positives = 169/253 (66%), Gaps = 12/253 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 42 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 101
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +E+A+V+VD+RG +
Sbjct: 102 DGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATG 161
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G VEFA KP A +AL RC +G F LT + RPVIVEP+E D+ DGL E+ + +KT +++
Sbjct: 162 KGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM-QKTQQYH 220
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FEFEY SRWK L E+ E ++E R I ++K E EM
Sbjct: 221 KEREQPPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEKLEAEM--- 272
Query: 350 QAEELKRRDEELM 362
E R + +LM
Sbjct: 273 ---EAARHEHQLM 282
>gi|213514310|ref|NP_001133340.1| splicing factor, proline- and glutamine-rich [Salmo salar]
gi|209150996|gb|ACI33054.1| Splicing factor, proline- and glutamine-rich [Salmo salar]
Length = 641
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 116/237 (48%), Positives = 162/237 (68%), Gaps = 6/237 (2%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DI+++ +LF YGE E+FINK K FGFIR++ + A+ AKA+L
Sbjct: 247 YTQRCRLFIGNLPNDISDDTFKKLFAKYGEPSEIFINKNKGFGFIRLESRALAEIAKAEL 306
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D +KGR L++RFA +AA+ VKNL+ V+NELLE AF FG +ERA+VIVD+RG S
Sbjct: 307 DDVPMKGRPLRVRFATHSAALSVKNLSPFVSNELLEEAFSQFGVVERAVVIVDDRGRSTG 366
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +AL RC +G F LT S RP++VEPLE D+ DGL E+ + +K ++
Sbjct: 367 KGIVEFASKPAARKALDRCNDGVFLLTTSPRPIVVEPLEQYDDEDGLPEK-LAQKNHNYH 425
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEM 346
K+R+ PRFA +FEFEY RWK L ++ E +++ ++ I R+K E EM
Sbjct: 426 KEREEPPRFARPGTFEFEYSKRWKSLDDM-----EKQQRQQVEKNIREAREKLEGEM 477
>gi|440911851|gb|ELR61479.1| Paraspeckle component 1, partial [Bos grunniens mutus]
Length = 465
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 121/253 (47%), Positives = 169/253 (66%), Gaps = 14/253 (5%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE+D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 22 YTQRCRLFVGNLPTDITEDDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 81
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +E+A+V+VD+RG +
Sbjct: 82 DGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATG 141
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G VEFA KP A +AL RC +G F LT + RPVIVEP+E D+ DGL E+ + +KT +++
Sbjct: 142 KGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM-QKTQQYH 200
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K++ PRFA +FEFEY SRWK L E+ E ++E R I ++K E EM
Sbjct: 201 KEQ--PPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEKLEAEM--- 250
Query: 350 QAEELKRRDEELM 362
E R + +LM
Sbjct: 251 ---EAARHEHQLM 260
>gi|113675176|ref|NP_001038723.1| paraspeckle component 1 [Danio rerio]
gi|123912695|sp|Q1JPY8.1|PSPC1_DANRE RecName: Full=Paraspeckle component 1
gi|94574327|gb|AAI16550.1| Paraspeckle component 1 [Danio rerio]
Length = 512
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 130/296 (43%), Positives = 189/296 (63%), Gaps = 18/296 (6%)
Query: 101 SEPQ--NKDIK---------FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEK 149
SEPQ DIK F CRL++GN+ D+ + D +LF YG+ +E+FIN+++
Sbjct: 52 SEPQEMTVDIKNFRRPGEKTFTQRCRLFVGNLPSDMADEDFKKLFFKYGDAKEVFINRDR 111
Query: 150 MFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFG 209
FGFIR++ + A+ AKA+LDG VL R ++IRFA AA+ V+NL+ V+NELLE AF
Sbjct: 112 GFGFIRLETRTLAEIAKAELDGTVLGNRPIRIRFATHGAALTVRNLSPVVSNELLEQAFS 171
Query: 210 VFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLEL 269
FG +ERAIVIVD+RG +GIVEFA KPAA +AL CA+G LT S RPVI+EP E
Sbjct: 172 QFGPVERAIVIVDDRGRPTGKGIVEFANKPAARKALDHCADGALLLTTSPRPVILEPTEQ 231
Query: 270 TDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKE 329
D+ DGL E+ + +K+ +++K+R+ P FA +FEFEY SRWK L E+ + + +E
Sbjct: 232 YDDEDGLPEKLL-QKSAQYHKEREHKPHFAQPGTFEFEYSSRWKALDEMDKQQ-----RE 285
Query: 330 LAQREIDRERQKAEWEMK-ERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQ 384
+R I ++K E EM+ +Q +L ++LM++ E +L + +E +R+Q
Sbjct: 286 QVERNIQEAKEKLETEMEAAKQEHQLMMMRQDLMRRQEELRRLEELRNQELQKRKQ 341
>gi|380258956|pdb|3SDE|A Chain A, Crystal Structure Of A Paraspeckle-Protein Heterodimer,
Pspc1NONO
Length = 261
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 122/253 (48%), Positives = 169/253 (66%), Gaps = 12/253 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 78
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +E+A+V+VD+RG +
Sbjct: 79 DGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATG 138
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G VEFA KP A +AL RC +G F LT + RPVIVEP+E D+ DGL E+ + +KT +++
Sbjct: 139 KGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEK-LMQKTQQYH 197
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FEFEY SRWK L E+ E ++E R I ++K E EM
Sbjct: 198 KEREQPPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEKLEAEM--- 249
Query: 350 QAEELKRRDEELM 362
E R + +LM
Sbjct: 250 ---EAARHEHQLM 259
>gi|441613574|ref|XP_003279199.2| PREDICTED: LOW QUALITY PROTEIN: paraspeckle component 1 isoform 2
[Nomascus leucogenys]
Length = 455
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 122/253 (48%), Positives = 169/253 (66%), Gaps = 12/253 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 140 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 199
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +E+A+V+VD+RG +
Sbjct: 200 DGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATG 259
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G VEFA KP A +AL RC +G F LT + RPVIVEP+E D+ DGL E+ + +KT +++
Sbjct: 260 KGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM-QKTQQYH 318
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FEFEY SRWK L E+ E ++E R I ++K E EM
Sbjct: 319 KEREQPPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEKLEAEM--- 370
Query: 350 QAEELKRRDEELM 362
E R + +LM
Sbjct: 371 ---EAARHEHQLM 380
>gi|260790499|ref|XP_002590279.1| hypothetical protein BRAFLDRAFT_216286 [Branchiostoma floridae]
gi|229275471|gb|EEN46290.1| hypothetical protein BRAFLDRAFT_216286 [Branchiostoma floridae]
Length = 322
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 133/314 (42%), Positives = 198/314 (63%), Gaps = 42/314 (13%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168
KF CRL++GN+ D E LF+ YGE E+++N+++ FGFIR+D +++A+ AK+
Sbjct: 16 KFTGRCRLFVGNLTPDTDEEAFKSLFQKYGEISEVYLNQQRGFGFIRLDTRYHAEVAKSD 75
Query: 169 LDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSK 228
LDG + KG+ L++RFA AA+KV NL+ V+NELLE AF FG++ERA+VIVD+RG
Sbjct: 76 LDGTMRKGKQLRVRFATHGAALKVTNLSPHVSNELLEQAFTQFGEVERAVVIVDDRGRPT 135
Query: 229 CEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEF 288
EGIVEFARKP A A++R +EGCF LT + +P++VEPLE DE DGL E+ I + +
Sbjct: 136 GEGIVEFARKPGATNAIKRISEGCFCLTATPKPILVEPLEQKDEEDGLQEKHI-ARNANY 194
Query: 289 YKQRQVGPRFATVNSFEFEYGSRWKQLHEL---------------------------YEH 321
++R+V PRF ++FEF+ RWKQL+E+ +EH
Sbjct: 195 TREREVQPRFINPSTFEFDMSQRWKQLYEMEKQQRDDLEKRILVAREKLEEEMQSAIHEH 254
Query: 322 ETEMLRKELAQR--------EIDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQLRL 373
+ ++R++L +R E+ R+ + E + R+ +E++R+DE M++ EEM LR
Sbjct: 255 QANLMRQDLMRRQEELRRLEEMRRQDEMRRRESEMRRQDEVRRQDE--MRR--EEM-LR- 308
Query: 374 AQQEEDLRRRQNDN 387
QQEE +RRRQ D+
Sbjct: 309 QQQEEAMRRRQADD 322
>gi|432874734|ref|XP_004072566.1| PREDICTED: non-POU domain-containing octamer-binding protein-like
[Oryzias latipes]
Length = 438
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 122/271 (45%), Positives = 180/271 (66%), Gaps = 11/271 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ +TE+D+ +LF YG+ E+FINKE+ FGFIR++ + A+ A+A+L
Sbjct: 59 FTQRSRLFVGNLPTGVTEDDLEKLFAKYGKASEIFINKERGFGFIRLETRIIAEIARAEL 118
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D HV +GR ++++FA AA+ VKNL +N+LLE AF +FG +ERA+VIVD+RG
Sbjct: 119 DDHVFRGRPIRVKFATHGAALSVKNLPEFASNDLLEEAFAIFGQVERAVVIVDDRGRPTG 178
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF KPAA +AL +C +G + LT RP+ VEP+E DE +GL+E+ INK +++
Sbjct: 179 KGIVEFTSKPAARKALDKCNDGAYLLTAFPRPITVEPMEQFDEDEGLTEKLINKNQ-QYH 237
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL--AQREIDRERQKAEWE-- 345
K+R+ PRFA SFE+EY RWK L E+ + + EM+ + + AQ +++ E + A E
Sbjct: 238 KEREQPPRFAQPGSFEYEYAMRWKALMEMEKQQYEMVDRNMKEAQEKLEAEMEAARHEHQ 297
Query: 346 -MKERQAEELKRRDEELMKK---HAEEMQLR 372
M RQ +L RR EEL + H +E+Q R
Sbjct: 298 VMLMRQ--DLLRRQEELRRMEELHNQEVQKR 326
>gi|33879558|gb|AAH27708.1| SFPQ protein, partial [Homo sapiens]
Length = 525
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 113/221 (51%), Positives = 154/221 (69%), Gaps = 1/221 (0%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 293 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 352
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 353 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 412
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 413 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 471
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL 330
K+R+ PRFA +FE+EY RWK L E+ + + E + K +
Sbjct: 472 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNM 512
>gi|213511084|ref|NP_001134004.1| paraspeckle component 1 [Salmo salar]
gi|209156124|gb|ACI34294.1| Paraspeckle component 1 [Salmo salar]
Length = 545
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 119/254 (46%), Positives = 168/254 (66%), Gaps = 7/254 (2%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F CRL++GN+ D+TE++ +LF YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 93 FTQRCRLFIGNLPTDLTEDEFKKLFSKYGEANEVFINRDRGFGFIRLETRTLAEIAKAEL 152
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG VL R ++IRFA +A+ V+NL+ V+NELLE AF FG +ERAIV+VD+RG
Sbjct: 153 DGTVLGNRPIRIRFATHGSALTVRNLSPVVSNELLEEAFSEFGPVERAIVVVDDRGRPTG 212
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G VEFA KP+A +AL RCA+G LT S RP IVEP E DE DGL E+ + K ++
Sbjct: 213 KGFVEFANKPSARKALDRCADGALLLTTSPRPAIVEPTEQLDEEDGLPEKLLVKSV-HYH 271
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FEFEY SRWK L E+ E +++ +R I ++K E EM+
Sbjct: 272 KEREHPPRFAQPGTFEFEYSSRWKALDEM-----EKQQRDQVERNIREAKEKLEQEMEAA 326
Query: 350 QAE-ELKRRDEELM 362
+ E +L ++LM
Sbjct: 327 KHEHQLMMMRQDLM 340
>gi|359322791|ref|XP_003639923.1| PREDICTED: LOW QUALITY PROTEIN: paraspeckle component 1 [Canis
lupus familiaris]
Length = 521
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 125/268 (46%), Positives = 170/268 (63%), Gaps = 13/268 (4%)
Query: 95 TLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFI 154
T+D+ S PQ + CR GN+ DI E D LF+ YGE E FIN++ FGFI
Sbjct: 62 TIDIK-SFPQPGRKTYTQRCRXLRGNLPTDIXEEDFKRLFERYGEPSEXFINRDAGFGFI 120
Query: 155 RMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDI 214
R++ + A+ AKA+LDG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +
Sbjct: 121 RLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPV 180
Query: 215 ERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEID 274
E+A+V+VD+RG + +G VEFA KP A +AL RC +G F LT + RPVIVEP+E D+ D
Sbjct: 181 EKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDED 240
Query: 275 GLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQRE 334
GL E+ + +KT +++K+R+ PRFA +FEFEY SRWK L E+ E ++E R
Sbjct: 241 GLPEKLM-QKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRN 294
Query: 335 IDRERQKAEWEMKERQAEELKRRDEELM 362
I ++K E EM E R + +LM
Sbjct: 295 IREAKEKLEAEM------EAARHEHQLM 316
>gi|348516258|ref|XP_003445656.1| PREDICTED: non-POU domain-containing octamer-binding protein-like
[Oreochromis niloticus]
Length = 442
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 124/271 (45%), Positives = 178/271 (65%), Gaps = 11/271 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ +TE D+ +LF YG+ E+FINKE+ FGFIR++ + A+ A+A+L
Sbjct: 59 FTQRSRLFVGNLPTGVTEEDLEKLFTKYGKASEIFINKERGFGFIRLETRIIAEIARAEL 118
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D +GR +++RFA AA+ VKNL V+NELLE AF VFG IERA+VIVD+RG
Sbjct: 119 DDTPFRGRPIRVRFATHGAALTVKNLPEFVSNELLEEAFAVFGQIERAVVIVDDRGRPTG 178
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF KPAA +AL +C++G + +T RPV VEP+E DE +GL E+ +NK +++
Sbjct: 179 KGIVEFTSKPAARKALDKCSDGAYLMTAFPRPVTVEPMEQFDEEEGLPEKLVNKNQ-QYH 237
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL--AQREIDRERQKAEWE-- 345
K+R+ PRFA SFE+EY RWK L E+ + + EM+ + + AQ +++ E + A E
Sbjct: 238 KEREQPPRFAQPGSFEYEYAMRWKALMEMEKQQYEMVDRNMKEAQEKLEAEMEAARHEHQ 297
Query: 346 -MKERQAEELKRRDEELMKK---HAEEMQLR 372
M RQ +L RR EEL + H +E+Q R
Sbjct: 298 VMLMRQ--DLLRRQEELRRMEELHNQEVQKR 326
>gi|355718867|gb|AES06413.1| Splicing factor, proline-and glutamine-rich [Mustela putorius furo]
Length = 351
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 113/221 (51%), Positives = 154/221 (69%), Gaps = 1/221 (0%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 112 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 171
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 172 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 231
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 232 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 290
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL 330
K+R+ PRFA +FE+EY RWK L E+ + + E + K +
Sbjct: 291 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNM 331
>gi|301617153|ref|XP_002938004.1| PREDICTED: paraspeckle component 1-like [Xenopus (Silurana)
tropicalis]
Length = 517
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 125/276 (45%), Positives = 178/276 (64%), Gaps = 7/276 (2%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE + +LF+ +GE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 72 YTQRCRLFVGNLPTDITEEEFKKLFEKFGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 131
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL V+NELLE AF +FG +ERA+VIVD+RG
Sbjct: 132 DGMILKNRPLRIRFATHGAALTVKNLAPVVSNELLEEAFSMFGPVERAVVIVDDRGRPTG 191
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G VEFA KPAA +AL RC EG F LT + RPVIVEP+E D+ DGL E+ + +KT ++
Sbjct: 192 KGFVEFAAKPAARKALERCTEGAFILTTTPRPVIVEPMEQFDDEDGLPEKFM-QKTQQYL 250
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMK-E 348
K FA +FEFEY SRWK L E+ E +++ R I ++K E EM+
Sbjct: 251 KXXXXXXXFAQPGTFEFEYSSRWKALDEM-----EKQQRDQVDRNIREAKEKLEAEMEAA 305
Query: 349 RQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQ 384
R +L ++LM++ E +L + +E +R+Q
Sbjct: 306 RHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQ 341
>gi|432849673|ref|XP_004066618.1| PREDICTED: paraspeckle component 1-like [Oryzias latipes]
Length = 506
Score = 229 bits (583), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 126/276 (45%), Positives = 175/276 (63%), Gaps = 7/276 (2%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++G++ DI+E D +F YG E+FIN+E+ FGFIR++ + A+ AKA+L
Sbjct: 83 FTQRSRLFVGSLPQDISEEDFKNMFAKYGNIGEMFINRERGFGFIRLETRTLAEIAKAEL 142
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG VL R LKIRFA AA+ V+NL VTNELLE AF FG +ERAIV+ D+RG
Sbjct: 143 DGTVLNNRQLKIRFATHGAALTVRNLLPTVTNELLEQAFSQFGPVERAIVVTDDRGRPTG 202
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF K A +AL RC+EG LT + PVIVEPLE D+ DGL E+ + +KTP+++
Sbjct: 203 KGIVEFGNKVVARKALERCSEGALLLTTTPCPVIVEPLEHLDDEDGLPEKLL-QKTPKYH 261
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKE- 348
K+R+ PRFA +FEFEY SRWK L E+ E ++E R I ++K E E++
Sbjct: 262 KEREQPPRFAQPGTFEFEYSSRWKALDEM-----EKQQREQVDRNIKEAKEKLEAELESA 316
Query: 349 RQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQ 384
R +L ++LM++ E +L + +E RR+Q
Sbjct: 317 RHEHQLMLMRQDLMRRQEELRRLEELRNQELQRRKQ 352
>gi|339243331|ref|XP_003377591.1| paraspeckle component 1 [Trichinella spiralis]
gi|316973596|gb|EFV57164.1| paraspeckle component 1 [Trichinella spiralis]
Length = 461
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 127/278 (45%), Positives = 177/278 (63%), Gaps = 25/278 (8%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168
KF+ RL++GN+ D TE ++ ELF +GE E FI++ K F F+RM + +A++AK K
Sbjct: 52 KFSGRARLFIGNLPQDTTEEELRELFSKFGELSECFISR-KGFAFVRMANRPSAERAKEK 110
Query: 169 LDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSK 228
LDG V KGR L+IRFA AA++VK L+ V+NELL AF +FGD+ERA+ IVD+RG
Sbjct: 111 LDGFVFKGRPLRIRFAANAAALRVKELSPLVSNELLFSAFSMFGDVERAVHIVDDRGRPT 170
Query: 229 CEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEF 288
EGIVEF RKP A +AL+R G F LT + RP++VEP E+ D+ DGL+ER + K F
Sbjct: 171 GEGIVEFERKPGAQEALKRINSGVFLLTGNSRPIVVEPFEVKDDEDGLAERLMTKNA-SF 229
Query: 289 YKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKE 348
++R PRFA +FEFEYG+RWK L+E+ E L+++ +R++ R + E EM
Sbjct: 230 QRERTAPPRFAPPGTFEFEYGNRWKALYEV-----EQLKRDELERQLKEARMQLENEM-- 282
Query: 349 RQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQND 386
E+M++ M LR EDLRRRQ++
Sbjct: 283 -----------EMMREDYRAMVLR-----EDLRRRQDE 304
>gi|126631869|gb|AAI34025.1| Pspc1 protein [Danio rerio]
Length = 356
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 125/274 (45%), Positives = 177/274 (64%), Gaps = 18/274 (6%)
Query: 101 SEPQ--NKDIK---------FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEK 149
SEPQ DIK F CRL++GN+ D+ + D +LF YG+ +E+FIN+++
Sbjct: 52 SEPQEMTVDIKNFRRPGEKTFTQRCRLFVGNLPSDMADEDFKKLFFKYGDAKEVFINRDR 111
Query: 150 MFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFG 209
FGFIR++ + A+ AKA+LDG VL R ++IRFA AA+ V+NL+ V+NELLE AF
Sbjct: 112 GFGFIRLETRTLAEIAKAELDGTVLGNRPIRIRFATHGAALTVRNLSPVVSNELLEQAFS 171
Query: 210 VFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLEL 269
FG +ERAIVIVD+RG +GIVEFA KPAA +AL CA+G LT S RPVI+EP E
Sbjct: 172 QFGPVERAIVIVDDRGRPTGKGIVEFANKPAARKALDHCADGALLLTTSPRPVILEPTEQ 231
Query: 270 TDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKE 329
D+ DGL E+ + +K+ +++K+R+ P FA +FEFEY SRWK L E+ + + +E
Sbjct: 232 YDDEDGLPEKLL-QKSAQYHKEREHKPHFAQPGTFEFEYSSRWKALDEMDKQQ-----RE 285
Query: 330 LAQREIDRERQKAEWEMK-ERQAEELKRRDEELM 362
+R I ++K E EM+ +Q +L ++LM
Sbjct: 286 QVERNIQEAKEKLETEMEAAKQEHQLMMMRQDLM 319
>gi|444727022|gb|ELW67531.1| Paraspeckle component 1 [Tupaia chinensis]
Length = 517
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 120/253 (47%), Positives = 165/253 (65%), Gaps = 18/253 (7%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 78 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 137
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +E+A+V+VD+RG +
Sbjct: 138 DGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATG 197
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G VEFA KP A +AL RC +G F LT + RPVIVEP+E D+ DGL E+ + +KT +++
Sbjct: 198 KGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM-QKTQQYH 256
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K RFA +FEFEY SRWK L E+ E ++E R I ++K E EM
Sbjct: 257 K------RFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEKLEAEM--- 302
Query: 350 QAEELKRRDEELM 362
E R + +LM
Sbjct: 303 ---EAARHEHQLM 312
>gi|449273105|gb|EMC82713.1| Splicing factor, proline- and glutamine-rich, partial [Columba
livia]
Length = 425
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 133/307 (43%), Positives = 186/307 (60%), Gaps = 38/307 (12%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DIT+ D LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 17 YTQRCRLFVGNLPADITDEDFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 76
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG +ERA+VIVD+RG S
Sbjct: 77 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPVERAVVIVDDRGRSTG 136
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 137 KGIVEFASKPAARKAFERCTEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 195
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHEL---------------------------YEHE 322
RFA SFEFEY RWK L E+ +EH+
Sbjct: 196 N------RFAQPGSFEFEYSQRWKSLDEMEKQQREQVAKNMKDAKDKLESEMEDAYHEHQ 249
Query: 323 TEMLRKELAQR--EIDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDL 380
+LR++L +R E+ R + EM++R+ E++ R EE ++ EEM +R + EE +
Sbjct: 250 ANLLRQDLMRRQEELRRMEELHNQEMQKRK--EIQLRQEEERRRREEEMMIRQREMEEQM 307
Query: 381 RRRQNDN 387
RR++ +N
Sbjct: 308 RRQREEN 314
>gi|351707006|gb|EHB09925.1| Paraspeckle component 1 [Heterocephalus glaber]
Length = 289
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 121/253 (47%), Positives = 168/253 (66%), Gaps = 14/253 (5%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 18 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 77
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +E+A+V+VD+RG +
Sbjct: 78 DGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATG 137
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G VEFA KP A +AL RC +G F LT + RPVIVEP+E D+ DGL E+ + +KT +++
Sbjct: 138 KGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM-QKTQQYH 196
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K++ PRFA +FEFEY SRWK L E+ E ++E R I ++K E EM
Sbjct: 197 KEQ--PPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEKLEAEM--- 246
Query: 350 QAEELKRRDEELM 362
E R + +LM
Sbjct: 247 ---EAARHEHQLM 256
>gi|156377944|ref|XP_001630905.1| predicted protein [Nematostella vectensis]
gi|156217935|gb|EDO38842.1| predicted protein [Nematostella vectensis]
Length = 378
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 135/303 (44%), Positives = 197/303 (65%), Gaps = 15/303 (4%)
Query: 106 KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKA 165
K+ KF CRL++GN+ D E ++ E+FK YGE E+FINKEK FGFIR+D + +A+ A
Sbjct: 2 KERKFTGRCRLFVGNLI-DCDEEEMKEMFKKYGEVAEVFINKEKGFGFIRLDTRLHAEAA 60
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERG 225
KA LD KGR+L++RFA AA++VKNL + VTNELLE AF FGD+ERA+V+ D RG
Sbjct: 61 KAGLDMATRKGRTLRVRFATHAAALRVKNLDNLVTNELLEQAFSQFGDVERAVVVCDVRG 120
Query: 226 NSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKT 285
SK GIVEF+RK A A+++ +E F L ++ RP+ VE E D+ DGL E+++ ++T
Sbjct: 121 RSKGHGIVEFSRKNNAHNAMQKISESLFLLGRTPRPISVEQYEQEDDEDGLVEKSVERQT 180
Query: 286 PEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELA-QRE-IDRERQKAE 343
+ K+R+V P FAT +FE E+ RWK L EL + E L K+ QRE ++ E Q A
Sbjct: 181 G-YQKEREVPPHFATPGTFESEWAQRWKALGELETQQREALDKQFKEQREALEAEMQTA- 238
Query: 344 WEMKERQA----EELKRRDEELMK----KHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQ 395
++E +A +E++RR EEL + +H EEM + Q++++ R ++ MF +Q+
Sbjct: 239 --IQEHEAMLMRQEIQRRQEELQRFEEMQHREEMMRQEMLQQQEMEMRHHEEMMFRKKQE 296
Query: 396 QGR 398
+ R
Sbjct: 297 EMR 299
>gi|198437014|ref|XP_002120739.1| PREDICTED: similar to paraspeckle component 1 [Ciona intestinalis]
Length = 531
Score = 224 bits (571), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 119/264 (45%), Positives = 166/264 (62%), Gaps = 15/264 (5%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168
KF RL++GN+ ITE + LF+P+GE E F+N EK FGF+RMD + NA++AK +
Sbjct: 116 KFTQRSRLFIGNLPTSITEEEFKNLFRPFGEVSETFVNAEKGFGFVRMDTRTNAERAKWE 175
Query: 169 LDGHVLKG-RSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNS 227
LDG V++ R L++RFA AA+ VKN++ V+NELLE AF FG +ERA+V+VD+RG S
Sbjct: 176 LDGKVMRSNRQLRVRFATHGAALSVKNISPFVSNELLEEAFSQFGPVERAVVVVDDRGKS 235
Query: 228 KCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPE 287
GIVEFARK +A +AL++ +GCF LT S R V+ LE D DGL ER ++K
Sbjct: 236 MERGIVEFARKSSATKALQQIRDGCFLLTSSPRAVVASTLEQEDTEDGLMERNVSKSQ-S 294
Query: 288 FYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMK 347
++++R+ PRFA NSFE E+ RWK L++L + E L K I ++K E EM+
Sbjct: 295 YFQEREAPPRFAKPNSFEEEFARRWKALYDLERQQREHLEK-----NIQEAKEKLETEME 349
Query: 348 ER--------QAEELKRRDEELMK 363
++L RR EEL +
Sbjct: 350 NAIHDHQTMLMKQDLLRRQEELQR 373
>gi|126342741|ref|XP_001362404.1| PREDICTED: non-POU domain-containing octamer-binding protein-like
[Monodelphis domestica]
Length = 484
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 122/274 (44%), Positives = 177/274 (64%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 83 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 142
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 143 DNMPLRGKQLRVRFACHSASLTVRNLPQFVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 202
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC+EG F LT RPV VEP++ D+ +GL E+ + K +F+
Sbjct: 203 KGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFH 261
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA SFE+EY RWK L E+ + + + + R I R+K E EM+
Sbjct: 262 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQV-----DRNIKEAREKLEMEMEAA 316
Query: 350 QAE--------ELKRRDEELMKK---HAEEMQLR 372
+ E +L RR EEL + H +E+Q R
Sbjct: 317 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 350
>gi|395546209|ref|XP_003774982.1| PREDICTED: non-POU domain-containing octamer-binding protein
isoform 1 [Sarcophilus harrisii]
Length = 476
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 122/274 (44%), Positives = 177/274 (64%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 75 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 134
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 135 DNMPLRGKQLRVRFACHSASLTVRNLPQFVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 194
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC+EG F LT RPV VEP++ D+ +GL E+ + K +F+
Sbjct: 195 KGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFH 253
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA SFE+EY RWK L E+ + + + + R I R+K E EM+
Sbjct: 254 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQV-----DRNIKEAREKLEMEMEAA 308
Query: 350 QAE--------ELKRRDEELMKK---HAEEMQLR 372
+ E +L RR EEL + H +E+Q R
Sbjct: 309 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 342
>gi|395546211|ref|XP_003774983.1| PREDICTED: non-POU domain-containing octamer-binding protein
isoform 2 [Sarcophilus harrisii]
Length = 486
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 122/274 (44%), Positives = 177/274 (64%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 85 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 144
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 145 DNMPLRGKQLRVRFACHSASLTVRNLPQFVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 204
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC+EG F LT RPV VEP++ D+ +GL E+ + K +F+
Sbjct: 205 KGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFH 263
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA SFE+EY RWK L E+ + + + + R I R+K E EM+
Sbjct: 264 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQV-----DRNIKEAREKLEMEMEAA 318
Query: 350 QAE--------ELKRRDEELMKK---HAEEMQLR 372
+ E +L RR EEL + H +E+Q R
Sbjct: 319 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 352
>gi|449499204|ref|XP_004176528.1| PREDICTED: non-POU domain-containing octamer-binding protein
[Taeniopygia guttata]
Length = 460
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 123/274 (44%), Positives = 178/274 (64%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 57 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 116
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG S
Sbjct: 117 DNMPLRGKQLRVRFACHSASLTVRNLPQFVSNELLEEAFSVFGQVERAVVIVDDRGRSSG 176
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC++G F LT RPV VEP++ D+ +GL E+ + K +++
Sbjct: 177 KGIVEFSGKPAARKALDRCSDGSFLLTTFPRPVTVEPMDQYDDEEGLPEKLVIKNQ-QYH 235
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA SFE+EY RWK L E+ E ++E R I R+K E EM+
Sbjct: 236 KEREQPPRFAQPGSFEYEYAMRWKALIEM-----EKQQQEQVDRNIKEAREKLEMEMEAA 290
Query: 350 QAE--------ELKRRDEELMKK---HAEEMQLR 372
+ E +L RR EEL + H +E+Q R
Sbjct: 291 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 324
>gi|224098664|ref|XP_002190377.1| PREDICTED: non-POU domain-containing octamer-binding protein
isoform 1 [Taeniopygia guttata]
Length = 469
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 123/274 (44%), Positives = 178/274 (64%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 66 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 125
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG S
Sbjct: 126 DNMPLRGKQLRVRFACHSASLTVRNLPQFVSNELLEEAFSVFGQVERAVVIVDDRGRSSG 185
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC++G F LT RPV VEP++ D+ +GL E+ + K +++
Sbjct: 186 KGIVEFSGKPAARKALDRCSDGSFLLTTFPRPVTVEPMDQYDDEEGLPEKLVIKNQ-QYH 244
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA SFE+EY RWK L E+ E ++E R I R+K E EM+
Sbjct: 245 KEREQPPRFAQPGSFEYEYAMRWKALIEM-----EKQQQEQVDRNIKEAREKLEMEMEAA 299
Query: 350 QAE--------ELKRRDEELMKK---HAEEMQLR 372
+ E +L RR EEL + H +E+Q R
Sbjct: 300 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 333
>gi|71895845|ref|NP_001026703.1| non-POU domain-containing octamer-binding protein [Gallus gallus]
gi|53134059|emb|CAG32298.1| hypothetical protein RCJMB04_22g22 [Gallus gallus]
Length = 473
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 122/274 (44%), Positives = 178/274 (64%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 70 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 129
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG S
Sbjct: 130 DNMPLRGKQLRVRFACHSASLTVRNLPQFVSNELLEEAFSVFGQVERAVVIVDDRGRSSG 189
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC++G F LT RPV VEP++ D+ +GL E+ + K +++
Sbjct: 190 KGIVEFSGKPAARKALDRCSDGSFLLTTFPRPVTVEPMDQYDDEEGLPEKLVIKNQ-QYH 248
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA SFE+EY RWK L E+ + + E + R I R+K E EM+
Sbjct: 249 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQEQV-----DRNIKEAREKLEMEMEAA 303
Query: 350 QAE--------ELKRRDEELMKK---HAEEMQLR 372
+ E +L RR EEL + H +E+Q R
Sbjct: 304 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 337
>gi|344282028|ref|XP_003412777.1| PREDICTED: non-POU domain-containing octamer-binding protein-like
[Loxodonta africana]
Length = 472
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 122/274 (44%), Positives = 177/274 (64%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 71 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 130
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 131 DNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 190
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC+EG F LT RPV VEP++ D+ +GL E+ + K +F+
Sbjct: 191 KGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFH 249
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA SFE+EY RWK L E+ + + + + R I R+K E EM+
Sbjct: 250 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQV-----DRNIKEAREKLEMEMEAA 304
Query: 350 QAE--------ELKRRDEELMKK---HAEEMQLR 372
+ E +L RR EEL + H +E+Q R
Sbjct: 305 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 338
>gi|390349441|ref|XP_003727221.1| PREDICTED: splicing factor, proline- and glutamine-rich-like
isoform 1 [Strongylocentrotus purpuratus]
Length = 598
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 153/398 (38%), Positives = 208/398 (52%), Gaps = 71/398 (17%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168
KF CRL++GN+ DI+E+D ++F+ YGE E F+N +K FGFIR+D + NA+ AKA
Sbjct: 103 KFTGRCRLFVGNLANDISESDFKKMFEKYGEVSETFLNSQKGFGFIRLDTRLNAEAAKAA 162
Query: 169 LDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSK 228
LDG K R++++RFA AA++VKN+ +NELLE AF +FG++ERAIVIVD+RG +
Sbjct: 163 LDGTQQKNRTIRVRFATHGAALRVKNIPPSTSNELLEQAFSMFGEVERAIVIVDDRGRAT 222
Query: 229 CEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEF 288
GIVEF+RKP A AL R +G F LT S PV VEPLE DE DG ER I K E+
Sbjct: 223 KNGIVEFSRKPGAQNALNRIGQGVFLLTVSPFPVTVEPLEQKDEEDGNQERYIMKNR-EY 281
Query: 289 YKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMK- 347
++R+ PRFA SFE+E+G R K L E E +M R +L ++ ID R K EM+
Sbjct: 282 QREREQPPRFAQPGSFEYEWGQRMKAL----EDEEKMKRDQL-EKNIDDSRLKVMDEMEI 336
Query: 348 ---ERQA----EELKRRDEEL---------------------------MKKHAEEMQLRL 373
E QA +EL RR EEL ++ E++ R
Sbjct: 337 AKTEHQAIVMRQELMRRQEELQRLEEQRREFEMRRNERDERRRQEENLFRQQQEDVLRRR 396
Query: 374 AQQEEDLR------RRQNDNSMFLVEQQQGRGGSGGYGSPGQAYG--------------- 412
Q++DLR RRQ +++M +E+Q GG + GQ G
Sbjct: 397 QVQQDDLRLQQDMMRRQQEDNMMQMERQSRFDQPGGGFNNGQNRGPNQGGPLPSGGGNGG 456
Query: 413 -----NAIIDFEALAAAVGNA----VVGNVTGVDNKGS 441
+A G V+G+ G GS
Sbjct: 457 GQGGNQGGNQPGGQSANRGGPGAPGVLGSAPGSGQVGS 494
>gi|74141990|dbj|BAE41058.1| unnamed protein product [Mus musculus]
Length = 528
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 122/274 (44%), Positives = 177/274 (64%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 127 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 186
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 187 DNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 246
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC+EG F LT RPV VEP++ D+ +GL E+ + K +F+
Sbjct: 247 KGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFH 305
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA SFE+EY RWK L E+ + + + + R I R+K E EM+
Sbjct: 306 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQV-----DRNIKEAREKLEMEMEAA 360
Query: 350 QAE--------ELKRRDEELMKK---HAEEMQLR 372
+ E +L RR EEL + H +E+Q R
Sbjct: 361 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 394
>gi|74141807|dbj|BAE40976.1| unnamed protein product [Mus musculus]
Length = 473
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 122/274 (44%), Positives = 177/274 (64%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 72 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 131
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 132 DNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 191
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC+EG F LT RPV VEP++ D+ +GL E+ + K +F+
Sbjct: 192 KGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFH 250
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA SFE+EY RWK L E+ + + + + R I R+K E EM+
Sbjct: 251 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQV-----DRNIKEAREKLEMEMEAA 305
Query: 350 QAE--------ELKRRDEELMKK---HAEEMQLR 372
+ E +L RR EEL + H +E+Q R
Sbjct: 306 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 339
>gi|395858895|ref|XP_003801790.1| PREDICTED: non-POU domain-containing octamer-binding protein
isoform 1 [Otolemur garnettii]
gi|395858897|ref|XP_003801791.1| PREDICTED: non-POU domain-containing octamer-binding protein
isoform 2 [Otolemur garnettii]
gi|395858899|ref|XP_003801792.1| PREDICTED: non-POU domain-containing octamer-binding protein
isoform 3 [Otolemur garnettii]
Length = 470
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 122/274 (44%), Positives = 177/274 (64%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 69 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 128
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 129 DNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 188
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC+EG F LT RPV VEP++ D+ +GL E+ + K +F+
Sbjct: 189 KGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFH 247
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA SFE+EY RWK L E+ + + + + R I R+K E EM+
Sbjct: 248 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQV-----DRNIKEAREKLEMEMEAA 302
Query: 350 QAE--------ELKRRDEELMKK---HAEEMQLR 372
+ E +L RR EEL + H +E+Q R
Sbjct: 303 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 336
>gi|326918801|ref|XP_003205675.1| PREDICTED: non-POU domain-containing octamer-binding protein-like
[Meleagris gallopavo]
Length = 516
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 123/274 (44%), Positives = 178/274 (64%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 113 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 172
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG S
Sbjct: 173 DNMPLRGKQLRVRFACHSASLTVRNLPQFVSNELLEEAFSVFGQVERAVVIVDDRGRSSG 232
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC++G F LT RPV VEP++ D+ +GL E+ + K +++
Sbjct: 233 KGIVEFSGKPAARKALDRCSDGSFLLTTFPRPVTVEPMDQYDDEEGLPEKLVIKNQ-QYH 291
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA SFE+EY RWK L E+ E ++E R I R+K E EM+
Sbjct: 292 KEREQPPRFAQPGSFEYEYAMRWKALIEM-----EKQQQEQVDRNIKEAREKLEMEMEAA 346
Query: 350 QAE--------ELKRRDEELMKK---HAEEMQLR 372
+ E +L RR EEL + H +E+Q R
Sbjct: 347 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 380
>gi|403305174|ref|XP_003943145.1| PREDICTED: non-POU domain-containing octamer-binding protein
isoform 1 [Saimiri boliviensis boliviensis]
gi|403305176|ref|XP_003943146.1| PREDICTED: non-POU domain-containing octamer-binding protein
isoform 2 [Saimiri boliviensis boliviensis]
Length = 471
Score = 222 bits (565), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 122/274 (44%), Positives = 177/274 (64%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 70 FTQQSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 129
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 130 DNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 189
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC+EG F LT RPV VEP++ D+ +GL E+ + K +F+
Sbjct: 190 KGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFH 248
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA SFE+EY RWK L E+ + + + + R I R+K E EM+
Sbjct: 249 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQV-----DRNIKEAREKLEMEMEAA 303
Query: 350 QAE--------ELKRRDEELMKK---HAEEMQLR 372
+ E +L RR EEL + H +E+Q R
Sbjct: 304 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 337
>gi|351710568|gb|EHB13487.1| Non-POU domain-containing octamer-binding protein [Heterocephalus
glaber]
Length = 471
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 122/274 (44%), Positives = 177/274 (64%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 70 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 129
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 130 DNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 189
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC+EG F LT RPV VEP++ D+ +GL E+ + K +F+
Sbjct: 190 KGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFH 248
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA SFE+EY RWK L E+ + + + + R I R+K E EM+
Sbjct: 249 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQV-----DRNIKEAREKLEMEMEAA 303
Query: 350 QAE--------ELKRRDEELMKK---HAEEMQLR 372
+ E +L RR EEL + H +E+Q R
Sbjct: 304 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 337
>gi|348506826|ref|XP_003440958.1| PREDICTED: paraspeckle component 1-like [Oreochromis niloticus]
Length = 517
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 120/276 (43%), Positives = 174/276 (63%), Gaps = 7/276 (2%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++G++ DI E + +F YG E+FIN+E+ FGFIR++ + A+ AKA+L
Sbjct: 81 FTQRSRLFVGSLPPDIPEEEFKNMFSKYGNVNEVFINRERGFGFIRLETRTVAEIAKAEL 140
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +L R +++RFA +A+ V+NL VTNELLE AF FG +ERAIV+ D+RG
Sbjct: 141 DGTILNNRPIRVRFATHGSALTVRNLLPVVTNELLEQAFSQFGPVERAIVVTDDRGRPTG 200
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
GIVEFA K AA +AL RC EG LT + P IVEP E D+ DGLSE+ + +KTP++Y
Sbjct: 201 RGIVEFANKIAARKALERCTEGALLLTTTPCPAIVEPAEHFDDEDGLSEKLL-QKTPKYY 259
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FEFE+ SRWK L E+ E +++ R I ++K E E++
Sbjct: 260 KEREQKPRFAQPGTFEFEFSSRWKALDEM-----EKQQRDQVDRNIKEAKEKLEAELESA 314
Query: 350 QAE-ELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQ 384
+ E +L ++LM++ E +L + +E RR+Q
Sbjct: 315 KHEHQLMLMRQDLMRRQEELRRLEELRNQELQRRKQ 350
>gi|343961801|dbj|BAK62488.1| non-POU domain-containing octamer-binding protein [Pan troglodytes]
Length = 471
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 122/274 (44%), Positives = 177/274 (64%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 70 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 129
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 130 DNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 189
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC+EG F LT RPV VEP++ D+ +GL E+ + K +F+
Sbjct: 190 KGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFH 248
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA SFE+EY RWK L E+ + + + + R I R+K E EM+
Sbjct: 249 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQV-----DRNIKEAREKLEMEMEAA 303
Query: 350 QAE--------ELKRRDEELMKK---HAEEMQLR 372
+ E +L RR EEL + H +E+Q R
Sbjct: 304 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 337
>gi|348570524|ref|XP_003471047.1| PREDICTED: non-POU domain-containing octamer-binding protein-like
[Cavia porcellus]
Length = 490
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 122/274 (44%), Positives = 177/274 (64%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 89 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 148
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 149 DNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 208
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC+EG F LT RPV VEP++ D+ +GL E+ + K +F+
Sbjct: 209 KGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFH 267
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA SFE+EY RWK L E+ + + + + R I R+K E EM+
Sbjct: 268 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQV-----DRNIKEAREKLEMEMEAA 322
Query: 350 QAE--------ELKRRDEELMKK---HAEEMQLR 372
+ E +L RR EEL + H +E+Q R
Sbjct: 323 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 356
>gi|59891440|ref|NP_001012356.1| non-POU domain-containing octamer-binding protein [Rattus
norvegicus]
gi|67460593|sp|Q5FVM4.3|NONO_RAT RecName: Full=Non-POU domain-containing octamer-binding protein;
Short=NonO protein
gi|58476510|gb|AAH89880.1| Non-POU domain containing, octamer-binding [Rattus norvegicus]
gi|149042186|gb|EDL95893.1| rCG36231, isoform CRA_b [Rattus norvegicus]
Length = 476
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 122/274 (44%), Positives = 177/274 (64%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 75 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 134
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 135 DNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 194
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC+EG F LT RPV VEP++ D+ +GL E+ + K +F+
Sbjct: 195 KGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFH 253
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA SFE+EY RWK L E+ + + + + R I R+K E EM+
Sbjct: 254 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQV-----DRNIKEAREKLEMEMEAA 308
Query: 350 QAE--------ELKRRDEELMKK---HAEEMQLR 372
+ E +L RR EEL + H +E+Q R
Sbjct: 309 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 342
>gi|74203206|dbj|BAE26278.1| unnamed protein product [Mus musculus]
Length = 475
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 122/274 (44%), Positives = 177/274 (64%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 74 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 133
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 134 DNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 193
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC+EG F LT RPV VEP++ D+ +GL E+ + K +F+
Sbjct: 194 KGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFH 252
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA SFE+EY RWK L E+ + + + + R I R+K E EM+
Sbjct: 253 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQV-----DRNIKEAREKLEMEMEAA 307
Query: 350 QAE--------ELKRRDEELMKK---HAEEMQLR 372
+ E +L RR EEL + H +E+Q R
Sbjct: 308 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 341
>gi|255958247|ref|NP_075633.2| non-POU domain-containing octamer-binding protein [Mus musculus]
gi|357394934|ref|NP_001239447.1| non-POU domain-containing octamer-binding protein [Mus musculus]
gi|67460966|sp|Q99K48.3|NONO_MOUSE RecName: Full=Non-POU domain-containing octamer-binding protein;
Short=NonO protein
gi|13529479|gb|AAH05465.1| Non-POU-domain-containing, octamer binding protein [Mus musculus]
gi|26390393|dbj|BAC25890.1| unnamed protein product [Mus musculus]
gi|53237043|gb|AAH83074.1| Non-POU-domain-containing, octamer binding protein [Mus musculus]
gi|71059811|emb|CAJ18449.1| Nono [Mus musculus]
gi|74191141|dbj|BAE39402.1| unnamed protein product [Mus musculus]
Length = 473
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 122/274 (44%), Positives = 177/274 (64%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 72 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 131
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 132 DNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 191
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC+EG F LT RPV VEP++ D+ +GL E+ + K +F+
Sbjct: 192 KGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFH 250
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA SFE+EY RWK L E+ + + + + R I R+K E EM+
Sbjct: 251 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQV-----DRNIKEAREKLEMEMEAA 305
Query: 350 QAE--------ELKRRDEELMKK---HAEEMQLR 372
+ E +L RR EEL + H +E+Q R
Sbjct: 306 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 339
>gi|407308|gb|AAA03427.1| 54 kDa protein [Homo sapiens]
gi|2808511|emb|CAA72157.1| p54nrb [Homo sapiens]
Length = 471
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 122/274 (44%), Positives = 177/274 (64%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 70 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 129
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 130 DNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 189
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC+EG F LT RPV VEP++ D+ +GL E+ + K +F+
Sbjct: 190 KGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFH 248
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA SFE+EY RWK L E+ + + + + R I R+K E EM+
Sbjct: 249 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQV-----DRNIKEAREKLEMEMEAA 303
Query: 350 QAE--------ELKRRDEELMKK---HAEEMQLR 372
+ E +L RR EEL + H +E+Q R
Sbjct: 304 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 337
>gi|114053303|ref|NP_001040019.1| non-POU domain-containing octamer-binding protein [Bos taurus]
gi|86821913|gb|AAI05533.1| Non-POU domain containing, octamer-binding [Bos taurus]
gi|296470811|tpg|DAA12926.1| TPA: non-POU domain containing, octamer-binding [Bos taurus]
gi|440901881|gb|ELR52747.1| Non-POU domain-containing octamer-binding protein [Bos grunniens
mutus]
Length = 470
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 122/274 (44%), Positives = 177/274 (64%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 69 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 128
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 129 DNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 188
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC+EG F LT RPV VEP++ D+ +GL E+ + K +F+
Sbjct: 189 KGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFH 247
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA SFE+EY RWK L E+ + + + + R I R+K E EM+
Sbjct: 248 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQV-----DRNIKEAREKLEMEMEAA 302
Query: 350 QAE--------ELKRRDEELMKK---HAEEMQLR 372
+ E +L RR EEL + H +E+Q R
Sbjct: 303 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 336
>gi|74007632|ref|XP_849110.1| PREDICTED: non-POU domain-containing octamer-binding protein
isoform 2 [Canis lupus familiaris]
gi|149758497|ref|XP_001492850.1| PREDICTED: non-POU domain-containing octamer-binding protein
isoform 1 [Equus caballus]
gi|149758499|ref|XP_001492904.1| PREDICTED: non-POU domain-containing octamer-binding protein
isoform 3 [Equus caballus]
gi|149758501|ref|XP_001492878.1| PREDICTED: non-POU domain-containing octamer-binding protein
isoform 2 [Equus caballus]
gi|301787371|ref|XP_002929099.1| PREDICTED: non-POU domain-containing octamer-binding protein-like
[Ailuropoda melanoleuca]
gi|335310107|ref|XP_003361890.1| PREDICTED: non-POU domain-containing octamer-binding protein [Sus
scrofa]
gi|410988796|ref|XP_004000663.1| PREDICTED: non-POU domain-containing octamer-binding protein
isoform 1 [Felis catus]
gi|417515897|gb|JAA53753.1| non-POU domain-containing octamer-binding protein [Sus scrofa]
Length = 470
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 122/274 (44%), Positives = 177/274 (64%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 69 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 128
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 129 DNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 188
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC+EG F LT RPV VEP++ D+ +GL E+ + K +F+
Sbjct: 189 KGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFH 247
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA SFE+EY RWK L E+ + + + + R I R+K E EM+
Sbjct: 248 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQV-----DRNIKEAREKLEMEMEAA 302
Query: 350 QAE--------ELKRRDEELMKK---HAEEMQLR 372
+ E +L RR EEL + H +E+Q R
Sbjct: 303 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 336
>gi|49900638|gb|AAH76169.1| Pspc1 protein [Danio rerio]
Length = 300
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 115/241 (47%), Positives = 161/241 (66%), Gaps = 12/241 (4%)
Query: 101 SEPQ--NKDIK---------FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEK 149
SEPQ DIK F CRL++GN+ D+ + D +LF YG+ +E+FIN+++
Sbjct: 52 SEPQEMTVDIKNFRRPGEKTFTQRCRLFVGNLPSDMADEDFKKLFFKYGDAKEVFINRDR 111
Query: 150 MFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFG 209
FGFIR++ + A+ AKA+LDG VL R ++IRFA AA+ V+NL+ V+NELLE AF
Sbjct: 112 GFGFIRLETRTLAEIAKAELDGTVLGNRPIRIRFATHGAALTVRNLSPVVSNELLEQAFS 171
Query: 210 VFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLEL 269
FG +ERAIVIVD+RG +GIVEFA KPAA +AL CA+G LT S RPVI+EP E
Sbjct: 172 QFGPVERAIVIVDDRGRPTGKGIVEFANKPAARKALDHCADGALLLTTSPRPVILEPTEQ 231
Query: 270 TDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKE 329
D+ DGL E+ + +K+ +++K+R+ P FA +FEFEY SRWK L E+ + + E + +
Sbjct: 232 YDDEDGLPEKLL-QKSAQYHKEREHKPHFAQPGTFEFEYSSRWKALDEMDKQQREQVERN 290
Query: 330 L 330
+
Sbjct: 291 I 291
>gi|34932414|ref|NP_031389.3| non-POU domain-containing octamer-binding protein isoform 1 [Homo
sapiens]
gi|197102787|ref|NP_001124612.1| non-POU domain-containing octamer-binding protein [Pongo abelii]
gi|224028244|ref|NP_001138880.1| non-POU domain-containing octamer-binding protein isoform 1 [Homo
sapiens]
gi|224028246|ref|NP_001138881.1| non-POU domain-containing octamer-binding protein isoform 1 [Homo
sapiens]
gi|109131161|ref|XP_001091069.1| PREDICTED: non-POU domain-containing octamer-binding protein-like
isoform 3 [Macaca mulatta]
gi|109131163|ref|XP_001091198.1| PREDICTED: non-POU domain-containing octamer-binding protein-like
isoform 4 [Macaca mulatta]
gi|109131165|ref|XP_001091316.1| PREDICTED: non-POU domain-containing octamer-binding protein-like
isoform 5 [Macaca mulatta]
gi|114689043|ref|XP_001136666.1| PREDICTED: non-POU domain-containing octamer-binding protein
isoform 4 [Pan troglodytes]
gi|114689045|ref|XP_001137135.1| PREDICTED: non-POU domain-containing octamer-binding protein
isoform 8 [Pan troglodytes]
gi|296235735|ref|XP_002763022.1| PREDICTED: non-POU domain-containing octamer-binding protein
isoform 1 [Callithrix jacchus]
gi|332247208|ref|XP_003272746.1| PREDICTED: non-POU domain-containing octamer-binding protein
isoform 1 [Nomascus leucogenys]
gi|332247210|ref|XP_003272747.1| PREDICTED: non-POU domain-containing octamer-binding protein
isoform 2 [Nomascus leucogenys]
gi|332247212|ref|XP_003272748.1| PREDICTED: non-POU domain-containing octamer-binding protein
isoform 3 [Nomascus leucogenys]
gi|390479908|ref|XP_003735807.1| PREDICTED: non-POU domain-containing octamer-binding protein
isoform 2 [Callithrix jacchus]
gi|397498845|ref|XP_003820184.1| PREDICTED: non-POU domain-containing octamer-binding protein
isoform 1 [Pan paniscus]
gi|397498847|ref|XP_003820185.1| PREDICTED: non-POU domain-containing octamer-binding protein
isoform 2 [Pan paniscus]
gi|397498849|ref|XP_003820186.1| PREDICTED: non-POU domain-containing octamer-binding protein
isoform 3 [Pan paniscus]
gi|402910484|ref|XP_003917906.1| PREDICTED: non-POU domain-containing octamer-binding protein-like
isoform 1 [Papio anubis]
gi|402910486|ref|XP_003917907.1| PREDICTED: non-POU domain-containing octamer-binding protein-like
isoform 2 [Papio anubis]
gi|67460768|sp|Q5RFL9.3|NONO_PONAB RecName: Full=Non-POU domain-containing octamer-binding protein;
Short=NonO protein
gi|67469924|sp|Q15233.4|NONO_HUMAN RecName: Full=Non-POU domain-containing octamer-binding protein;
Short=NonO protein; AltName: Full=54 kDa nuclear RNA-
and DNA-binding protein; AltName: Full=55 kDa nuclear
protein; AltName: Full=DNA-binding p52/p100 complex, 52
kDa subunit; AltName: Full=NMT55; AltName:
Full=p54(nrb); Short=p54nrb
gi|1895081|gb|AAC51852.1| nuclear matrix protein 55 [Homo sapiens]
gi|12803121|gb|AAH02364.1| Non-POU domain containing, octamer-binding [Homo sapiens]
gi|13111917|gb|AAH03129.1| NONO protein [Homo sapiens]
gi|15082448|gb|AAH12141.1| NONO protein [Homo sapiens]
gi|20271432|gb|AAH28299.1| Non-POU domain containing, octamer-binding [Homo sapiens]
gi|46854868|gb|AAH69616.1| Non-POU domain containing, octamer-binding [Homo sapiens]
gi|46854873|gb|AAH69639.1| Non-POU domain containing, octamer-binding [Homo sapiens]
gi|48145639|emb|CAG33042.1| NONO [Homo sapiens]
gi|55725143|emb|CAH89438.1| hypothetical protein [Pongo abelii]
gi|119625703|gb|EAX05298.1| non-POU domain containing, octamer-binding, isoform CRA_a [Homo
sapiens]
gi|119625704|gb|EAX05299.1| non-POU domain containing, octamer-binding, isoform CRA_a [Homo
sapiens]
gi|119625705|gb|EAX05300.1| non-POU domain containing, octamer-binding, isoform CRA_a [Homo
sapiens]
gi|208965286|dbj|BAG72657.1| non-POU domain containing, octamer-binding protein [synthetic
construct]
gi|355704910|gb|EHH30835.1| Non-POU domain-containing octamer-binding protein [Macaca mulatta]
gi|355757454|gb|EHH60979.1| Non-POU domain-containing octamer-binding protein [Macaca
fascicularis]
gi|380784065|gb|AFE63908.1| non-POU domain-containing octamer-binding protein isoform 1 [Macaca
mulatta]
gi|410213274|gb|JAA03856.1| non-POU domain containing, octamer-binding [Pan troglodytes]
gi|410213276|gb|JAA03857.1| non-POU domain containing, octamer-binding [Pan troglodytes]
gi|410213278|gb|JAA03858.1| non-POU domain containing, octamer-binding [Pan troglodytes]
gi|410265006|gb|JAA20469.1| non-POU domain containing, octamer-binding [Pan troglodytes]
gi|410265008|gb|JAA20470.1| non-POU domain containing, octamer-binding [Pan troglodytes]
gi|410265010|gb|JAA20471.1| non-POU domain containing, octamer-binding [Pan troglodytes]
gi|410265012|gb|JAA20472.1| non-POU domain containing, octamer-binding [Pan troglodytes]
gi|410265014|gb|JAA20473.1| non-POU domain containing, octamer-binding [Pan troglodytes]
Length = 471
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 122/274 (44%), Positives = 177/274 (64%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 70 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 129
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 130 DNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 189
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC+EG F LT RPV VEP++ D+ +GL E+ + K +F+
Sbjct: 190 KGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFH 248
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA SFE+EY RWK L E+ + + + + R I R+K E EM+
Sbjct: 249 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQV-----DRNIKEAREKLEMEMEAA 303
Query: 350 QAE--------ELKRRDEELMKK---HAEEMQLR 372
+ E +L RR EEL + H +E+Q R
Sbjct: 304 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 337
>gi|432096328|gb|ELK27089.1| Non-POU domain-containing octamer-binding protein [Myotis davidii]
Length = 470
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 122/274 (44%), Positives = 177/274 (64%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 69 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 128
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 129 DNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 188
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC+EG F LT RPV VEP++ D+ +GL E+ + K +F+
Sbjct: 189 KGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFH 247
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA SFE+EY RWK L E+ + + + + R I R+K E EM+
Sbjct: 248 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQV-----DRNIKEAREKLEMEMEAA 302
Query: 350 QAE--------ELKRRDEELMKK---HAEEMQLR 372
+ E +L RR EEL + H +E+Q R
Sbjct: 303 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 336
>gi|74139027|dbj|BAE38416.1| unnamed protein product [Mus musculus]
Length = 473
Score = 221 bits (564), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 122/274 (44%), Positives = 177/274 (64%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 72 FTQRSRLFVGNLPTDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 131
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 132 DNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 191
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC+EG F LT RPV VEP++ D+ +GL E+ + K +F+
Sbjct: 192 KGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFH 250
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA SFE+EY RWK L E+ + + + + R I R+K E EM+
Sbjct: 251 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQV-----DRNIKEAREKLEMEMEAA 305
Query: 350 QAE--------ELKRRDEELMKK---HAEEMQLR 372
+ E +L RR EEL + H +E+Q R
Sbjct: 306 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 339
>gi|30584547|gb|AAP36526.1| Homo sapiens non-POU domain containing, octamer-binding [synthetic
construct]
gi|60652579|gb|AAX28984.1| non-POU domain containing octamer-binding [synthetic construct]
Length = 472
Score = 221 bits (564), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 122/274 (44%), Positives = 177/274 (64%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 70 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 129
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 130 DNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 189
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC+EG F LT RPV VEP++ D+ +GL E+ + K +F+
Sbjct: 190 KGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFH 248
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA SFE+EY RWK L E+ + + + + R I R+K E EM+
Sbjct: 249 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQV-----DRNIKEAREKLEMEMEAA 303
Query: 350 QAE--------ELKRRDEELMKK---HAEEMQLR 372
+ E +L RR EEL + H +E+Q R
Sbjct: 304 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 337
>gi|348239|gb|AAC37578.1| unnamed protein product [Homo sapiens]
Length = 471
Score = 221 bits (564), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 122/274 (44%), Positives = 177/274 (64%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 70 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 129
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 130 DNMPLRGKQLRVRFACHSASLHVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 189
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC+EG F LT RPV VEP++ D+ +GL E+ + K +F+
Sbjct: 190 KGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFH 248
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA SFE+EY RWK L E+ + + + + R I R+K E EM+
Sbjct: 249 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQV-----DRNIKEAREKLEMEMEAA 303
Query: 350 QAE--------ELKRRDEELMKK---HAEEMQLR 372
+ E +L RR EEL + H +E+Q R
Sbjct: 304 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 337
>gi|148682195|gb|EDL14142.1| mCG119680, isoform CRA_a [Mus musculus]
Length = 512
Score = 221 bits (563), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 122/274 (44%), Positives = 177/274 (64%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 111 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 170
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 171 DNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 230
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC+EG F LT RPV VEP++ D+ +GL E+ + K +F+
Sbjct: 231 KGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFH 289
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA SFE+EY RWK L E+ + + + + R I R+K E EM+
Sbjct: 290 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQV-----DRNIKEAREKLEMEMEAA 344
Query: 350 QAE--------ELKRRDEELMKK---HAEEMQLR 372
+ E +L RR EEL + H +E+Q R
Sbjct: 345 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 378
>gi|148682196|gb|EDL14143.1| mCG119680, isoform CRA_b [Mus musculus]
Length = 509
Score = 221 bits (563), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 122/274 (44%), Positives = 177/274 (64%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 108 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 167
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 168 DNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 227
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC+EG F LT RPV VEP++ D+ +GL E+ + K +F+
Sbjct: 228 KGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFH 286
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA SFE+EY RWK L E+ + + + + R I R+K E EM+
Sbjct: 287 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQV-----DRNIKEAREKLEMEMEAA 341
Query: 350 QAE--------ELKRRDEELMKK---HAEEMQLR 372
+ E +L RR EEL + H +E+Q R
Sbjct: 342 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 375
>gi|402910488|ref|XP_003917908.1| PREDICTED: non-POU domain-containing octamer-binding protein-like
isoform 3 [Papio anubis]
Length = 463
Score = 221 bits (563), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 122/274 (44%), Positives = 177/274 (64%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 62 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 121
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 122 DNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 181
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC+EG F LT RPV VEP++ D+ +GL E+ + K +F+
Sbjct: 182 KGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFH 240
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA SFE+EY RWK L E+ + + + + R I R+K E EM+
Sbjct: 241 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQV-----DRNIKEAREKLEMEMEAA 295
Query: 350 QAE--------ELKRRDEELMKK---HAEEMQLR 372
+ E +L RR EEL + H +E+Q R
Sbjct: 296 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 329
>gi|67970671|dbj|BAE01678.1| unnamed protein product [Macaca fascicularis]
Length = 471
Score = 221 bits (563), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 122/274 (44%), Positives = 176/274 (64%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 70 FTQRSRLFVGNLPPDITEEEMRRLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 129
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 130 DNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 189
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC+EG F LT RPV VEP++ D+ +GL E+ + K +F+
Sbjct: 190 KGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFH 248
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA SFE+EY RWK L E+ + + + + R I R+K E EM+
Sbjct: 249 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQV-----DRNIKEAREKLEMEMEAA 303
Query: 350 QAE--------ELKRRDEELMKK---HAEEMQLR 372
+ E +L RR EEL + H +E+Q R
Sbjct: 304 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 337
>gi|158255716|dbj|BAF83829.1| unnamed protein product [Homo sapiens]
Length = 471
Score = 221 bits (563), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 122/274 (44%), Positives = 177/274 (64%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 70 FTRRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 129
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 130 DNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 189
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC+EG F LT RPV VEP++ D+ +GL E+ + K +F+
Sbjct: 190 KGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFH 248
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA SFE+EY RWK L E+ + + + + R I R+K E EM+
Sbjct: 249 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQV-----DRNIKEAREKLEMEMEAA 303
Query: 350 QAE--------ELKRRDEELMKK---HAEEMQLR 372
+ E +L RR EEL + H +E+Q R
Sbjct: 304 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 337
>gi|391347718|ref|XP_003748102.1| PREDICTED: protein no-on-transient A-like [Metaseiulus
occidentalis]
Length = 563
Score = 221 bits (563), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 124/273 (45%), Positives = 168/273 (61%), Gaps = 11/273 (4%)
Query: 99 PPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDY 158
P P KD ++ CRL++GN+ DITE+ + L +P+G ELF+ K F F R +
Sbjct: 119 PDQIPVKKDS--SSKCRLFIGNLIPDITEDGMRNLLEPFGNLVELFVPPGKGFAFARYET 176
Query: 159 KHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAI 218
+ NA+ AK+ LDG + R L++RFA A +KV+NL+ V+NELL AF FG++ERA
Sbjct: 177 RANAEAAKSALDGELFSNRQLQVRFASQGAVLKVRNLSPFVSNELLHQAFEPFGELERAT 236
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSE 278
V VDERG S EGI+EF+RKP A +R+ C LT S PVI+EP+EL D+ DG SE
Sbjct: 237 VFVDERGKSLGEGILEFSRKPVALAVMRKAQLECLLLTTSPLPVIIEPMELKDDEDGYSE 296
Query: 279 RTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRE 338
RTINK++ + K+R+ GPRFA SFE E+ +WK+L L E L+KE REI E
Sbjct: 297 RTINKQSTGYLKEREKGPRFAERGSFESEFAMKWKELLAL-----EKLKKEQLDREIQLE 351
Query: 339 RQKAEWEMK----ERQAEELKRRDEELMKKHAE 367
+Q+ EM + E LKRR + L +H E
Sbjct: 352 KQRLMEEMDIMKYDYDVEALKRRLKALEARHDE 384
Score = 41.6 bits (96), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDG 171
+ +L++ + I++ + ELF +G +LF++K+K FG + + A+ A+
Sbjct: 36 SKTKLFIATVKQGISDQEFRELFTKFGNVTDLFLHKQKWFGLVTFEKHEEAEAAR----K 91
Query: 172 HVLKGRSLKIRFA 184
H + LK+++A
Sbjct: 92 HYINSNILKLKWA 104
>gi|354497987|ref|XP_003511098.1| PREDICTED: non-POU domain-containing octamer-binding protein
[Cricetulus griseus]
Length = 426
Score = 221 bits (563), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 122/274 (44%), Positives = 177/274 (64%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 25 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 84
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 85 DNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 144
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC+EG F LT RPV VEP++ D+ +GL E+ + K +F+
Sbjct: 145 KGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFH 203
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA SFE+EY RWK L E+ + + + + R I R+K E EM+
Sbjct: 204 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQV-----DRNIKEAREKLEMEMEAA 258
Query: 350 QAE--------ELKRRDEELMKK---HAEEMQLR 372
+ E +L RR EEL + H +E+Q R
Sbjct: 259 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 292
>gi|281340177|gb|EFB15761.1| hypothetical protein PANDA_019197 [Ailuropoda melanoleuca]
Length = 420
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 122/274 (44%), Positives = 177/274 (64%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 19 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 78
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 79 DNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 138
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC+EG F LT RPV VEP++ D+ +GL E+ + K +F+
Sbjct: 139 KGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFH 197
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA SFE+EY RWK L E+ + + + + R I R+K E EM+
Sbjct: 198 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQV-----DRNIKEAREKLEMEMEAA 252
Query: 350 QAE--------ELKRRDEELMKK---HAEEMQLR 372
+ E +L RR EEL + H +E+Q R
Sbjct: 253 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 286
>gi|410928138|ref|XP_003977458.1| PREDICTED: non-POU domain-containing octamer-binding protein-like
[Takifugu rubripes]
Length = 443
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 118/271 (43%), Positives = 175/271 (64%), Gaps = 11/271 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ + E D+ LF YG+ E+FINK++ FGFIR++ + A+ A+A+L
Sbjct: 59 FTQRSRLFVGNLPTGVAEEDLERLFAKYGKASEIFINKDRGFGFIRLETRIIAEIARAEL 118
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D +GR +++RFA AA+ VKNL V+NELLE AF VFG IERA+V+VD+RG
Sbjct: 119 DDTPFRGRPIRVRFATHGAALTVKNLPEFVSNELLEEAFAVFGQIERAVVVVDDRGRPTG 178
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVE+ KPAA +AL +C +G + LT RPV VEP++ D+ +GL E+ +NK +++
Sbjct: 179 KGIVEYTSKPAARKALDKCNDGSYLLTAFPRPVTVEPMDQLDDDEGLPEKLVNKNQ-QYH 237
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL--AQREIDRERQKAEWE-- 345
K+R+ PRFA +FE+EY RWK L E+ + + EM+ + + AQ +++ E + A E
Sbjct: 238 KEREQPPRFAQPGTFEYEYAMRWKALMEMEKQQYEMVDRNMKEAQEKLEAEMEAARHEHQ 297
Query: 346 -MKERQAEELKRRDEELMKK---HAEEMQLR 372
M RQ +L RR EEL + H +E+Q R
Sbjct: 298 VMLMRQ--DLLRRQEELRRMEELHNQEVQKR 326
>gi|291407669|ref|XP_002720131.1| PREDICTED: splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated)-like [Oryctolagus
cuniculus]
Length = 459
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 131/301 (43%), Positives = 189/301 (62%), Gaps = 20/301 (6%)
Query: 84 FTEKIMAIQGPTLDLPP-SEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQE 142
F+ A +G T+DL +P K F RL++GN+ DITE ++ +LF+ YG+ E
Sbjct: 33 FSAHAYADEGLTIDLKNFRKPGEKT--FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGE 90
Query: 143 LFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNE 202
+FI+K+K FGFIR++ + A+ AK +LD L+G+ L++RFA +A++ V+NL V+NE
Sbjct: 91 VFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNE 150
Query: 203 LLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPV 262
LLE AF VFG +ERA+VIVD+RG +GIVEF+ KPAA +AL RC+EG F LT RPV
Sbjct: 151 LLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPV 210
Query: 263 IVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHE 322
VEP++ D+ +GL E+ + K +F+K+R+ PRFA SFE+EY RWK L E+
Sbjct: 211 TVEPMDQLDDEEGLPEKLVIKNQ-QFHKEREQPPRFAQPGSFEYEYAMRWKALIEM---- 265
Query: 323 TEMLRKELAQREIDRERQKAEWEMKERQAE--------ELKRRDEELMKK---HAEEMQL 371
E +++ R I R+K E EM+ + E +L RR EEL + H +E+Q
Sbjct: 266 -EKQQQDQVDRNIKEAREKLEMEMEAARHEHQVMLMRQDLMRRQEELRRMEELHNQEVQK 324
Query: 372 R 372
R
Sbjct: 325 R 325
>gi|291414362|ref|XP_002723429.1| PREDICTED: non-POU domain containing, octamer-binding-like
[Oryctolagus cuniculus]
Length = 470
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 120/273 (43%), Positives = 176/273 (64%), Gaps = 17/273 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 69 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 128
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 129 DNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 188
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC+EG F LT RPV VEP++ D+ +GL E+ + K +F+
Sbjct: 189 KGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFH 247
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA SFE+EY RWK L E+ + + + + R I R+K E EM
Sbjct: 248 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQV-----DRNIKEAREKLEMEM--- 299
Query: 350 QAEELKRRDEELMKKHAEEMQLRLAQQEEDLRR 382
E R + ++M M+ L + +E+LRR
Sbjct: 300 ---EAARHEHQVML-----MRQDLMRHQEELRR 324
>gi|426257202|ref|XP_004022221.1| PREDICTED: non-POU domain-containing octamer-binding protein
isoform 1 [Ovis aries]
gi|426257204|ref|XP_004022222.1| PREDICTED: non-POU domain-containing octamer-binding protein
isoform 2 [Ovis aries]
Length = 470
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 121/274 (44%), Positives = 177/274 (64%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 69 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 128
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V++ELLE AF VFG +ERA+VIVD+RG
Sbjct: 129 DNMPLRGKQLRVRFACHSASLTVRNLPQYVSSELLEEAFSVFGQVERAVVIVDDRGRPSG 188
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC+EG F LT RPV VEP++ D+ +GL E+ + K +F+
Sbjct: 189 KGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFH 247
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA SFE+EY RWK L E+ + + + + R I R+K E EM+
Sbjct: 248 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQV-----DRNIKEAREKLEMEMEAA 302
Query: 350 QAE--------ELKRRDEELMKK---HAEEMQLR 372
+ E +L RR EEL + H +E+Q R
Sbjct: 303 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 336
>gi|74145658|dbj|BAE36217.1| unnamed protein product [Mus musculus]
Length = 473
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 121/274 (44%), Positives = 176/274 (64%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 72 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 131
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 132 DNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 191
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC+EG F LT RPV VEP++ D+ +GL E+ + K +F+
Sbjct: 192 KGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFH 250
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA S E+EY RWK L E+ + + + + R I R+K E EM+
Sbjct: 251 KEREQPPRFAQPGSLEYEYAMRWKALIEMEKQQQDQV-----DRNIKEAREKLEMEMEAA 305
Query: 350 QAE--------ELKRRDEELMKK---HAEEMQLR 372
+ E +L RR EEL + H +E+Q R
Sbjct: 306 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 339
>gi|72179115|ref|XP_798086.1| PREDICTED: splicing factor, proline- and glutamine-rich-like
isoform 2 [Strongylocentrotus purpuratus]
Length = 646
Score = 218 bits (556), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 151/391 (38%), Positives = 204/391 (52%), Gaps = 70/391 (17%)
Query: 43 RGGGRGGG------------------------VGGRGGYRGNRPDGRGSDMNESRMGGGG 78
+GGG G G NRP +G + + + G
Sbjct: 28 KGGGEGSSNSTPAKPVKQEGGQRGGGGPQHQHQSGAEKRHNNRPPYQGGNRKDYQKG--- 84
Query: 79 GGDRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYG 138
+ + + P D P + KF CRL++GN+ DI+E+D ++F+ YG
Sbjct: 85 ------NDALNPL--PEFDGGPR----TEKKFTGRCRLFVGNLANDISESDFKKMFEKYG 132
Query: 139 ETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSC 198
E E F+N +K FGFIR+D + NA+ AKA LDG K R++++RFA AA++VKN+
Sbjct: 133 EVSETFLNSQKGFGFIRLDTRLNAEAAKAALDGTQQKNRTIRVRFATHGAALRVKNIPPS 192
Query: 199 VTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQS 258
+NELLE AF +FG++ERAIVIVD+RG + GIVEF+RKP A AL R +G F LT S
Sbjct: 193 TSNELLEQAFSMFGEVERAIVIVDDRGRATKNGIVEFSRKPGAQNALNRIGQGVFLLTVS 252
Query: 259 LRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHEL 318
PV VEPLE DE DG ER I K E+ ++R+ PRFA SFE+E+G R K L
Sbjct: 253 PFPVTVEPLEQKDEEDGNQERYIMKNR-EYQREREQPPRFAQPGSFEYEWGQRMKAL--- 308
Query: 319 YEHETEMLRKELAQREIDRERQKAEWEMK----ERQA----EELKRRDEELMKKHAEEMQ 370
E E +M R +L ++ ID R K EM+ E QA +EL RR EEL + + +
Sbjct: 309 -EDEEKMKRDQL-EKNIDDSRLKVMDEMEIAKTEHQAIVMRQELMRRQEELQRLEEQRRE 366
Query: 371 -----------------LRLAQQEEDLRRRQ 384
L QQE+ LRRRQ
Sbjct: 367 FEMRRNERDERRRQEENLFRQQQEDVLRRRQ 397
>gi|391332378|ref|XP_003740612.1| PREDICTED: splicing factor, proline- and glutamine-rich-like
[Metaseiulus occidentalis]
Length = 536
Score = 218 bits (556), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 123/297 (41%), Positives = 180/297 (60%), Gaps = 18/297 (6%)
Query: 88 IMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINK 147
+ +QG T +L ++ + K KF CRL++ + + E+++ + F YGE E+F NK
Sbjct: 157 LYEMQGNTYNLQVTQSEPK--KFTARCRLFVAPLPPSVNEDELKKWFSQYGEVGEVFFNK 214
Query: 148 EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELA 207
K F F++MD + N + AK LD G ++++RF+ AA+++ NLT+ VTNELLE A
Sbjct: 215 SKNFAFVKMDTRENCEVAKNSLDFAKKDGVTIRVRFSSNPAAVRISNLTNYVTNELLETA 274
Query: 208 FGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPL 267
F VFG+IERA+VI DERG EGIVEFA+K +A A+RRC E C LT S RPV+VEP
Sbjct: 275 FSVFGEIERAVVIADERGRPTGEGIVEFAQKRSAVLAIRRCEEECLLLTASPRPVLVEPY 334
Query: 268 ELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLR 327
+ DE +GL ER +N K+ ++ +R++GPR A SFE+E+G +WK+L E+ E +
Sbjct: 335 DFRDEDEGLPERNLN-KSKSYHAERELGPRTAMPGSFEYEFGLKWKRLFEM-----EAKK 388
Query: 328 KELAQREIDRERQKAE----WEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDL 380
KE + + R RQ E + M E +A L+ K A E Q + Q+E D+
Sbjct: 389 KEQLEYDNKRCRQMMEEQLDYYMYEHEANLLRE------KLRAMEEQTQQIQRERDM 439
>gi|426396365|ref|XP_004065438.1| PREDICTED: LOW QUALITY PROTEIN: non-POU domain-containing
octamer-binding protein [Gorilla gorilla gorilla]
Length = 532
Score = 218 bits (555), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 123/274 (44%), Positives = 178/274 (64%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 70 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 129
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 130 DNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 189
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC+EG F LT RPV VEP++ D+ +GL E+ + K +F+
Sbjct: 190 KGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFH 248
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMK-- 347
K+R+ PRFA SFE+EY RWK L E+ + + + + R I R+K E EM+
Sbjct: 249 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQV-----DRNIKEAREKLEMEMEAA 303
Query: 348 --ERQA----EELKRRDEELMKK---HAEEMQLR 372
E Q ++L RR EEL + H +E+Q R
Sbjct: 304 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 337
>gi|148682197|gb|EDL14144.1| mCG119680, isoform CRA_c [Mus musculus]
Length = 477
Score = 218 bits (555), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 123/274 (44%), Positives = 177/274 (64%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 117 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 176
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 177 DNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 236
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC+EG F LT RPV VEP++ D+ +GL E+ + K +F+
Sbjct: 237 KGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFH 295
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA SFE+EY RWK L E+ E +++ R I R+K E EM+
Sbjct: 296 KEREQPPRFAQPGSFEYEYAMRWKALIEM-----EKQQQDQVDRNIKEAREKLEMEMEAA 350
Query: 350 QAE--------ELKRRDEELMKK---HAEEMQLR 372
+ E +L RR EEL + H +E+Q R
Sbjct: 351 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 384
>gi|355707593|gb|AES03003.1| non-POU domain containing, octamer-binding protein [Mustela
putorius furo]
Length = 375
Score = 218 bits (554), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 123/274 (44%), Positives = 178/274 (64%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 69 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 128
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 129 DNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 188
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC+EG F LT RPV VEP++ D+ +GL E+ + K +F+
Sbjct: 189 KGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFH 247
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMK-- 347
K+R+ PRFA SFE+EY RWK L E+ + + + + R I R+K E EM+
Sbjct: 248 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQV-----DRNIKEAREKLEMEMEAA 302
Query: 348 --ERQA----EELKRRDEELMKK---HAEEMQLR 372
E Q ++L RR EEL + H +E+Q R
Sbjct: 303 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 336
>gi|1083440|pir||A54691 octamer-binding protein NonO - mouse
gi|409981|gb|AAB27887.1| NonO [Mus sp.]
Length = 473
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 120/274 (43%), Positives = 175/274 (63%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ K +L
Sbjct: 72 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIVKVEL 131
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 132 DNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 191
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC+EG F LT PV VEP++ D+ +GL E+ + K +F+
Sbjct: 192 KGIVEFSGKPAARKALDRCSEGSFLLTTFPWPVTVEPMDQLDDEEGLPEKLVIKNQ-QFH 250
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA SFE+EY RWK L E+ + + + + R I R+K E EM+
Sbjct: 251 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQV-----DRNIKEAREKLEMEMEAA 305
Query: 350 QAE--------ELKRRDEELMKK---HAEEMQLR 372
+ E +L RR EEL + H +E+Q R
Sbjct: 306 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 339
>gi|149042187|gb|EDL95894.1| rCG36231, isoform CRA_c [Rattus norvegicus]
Length = 444
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 124/274 (45%), Positives = 178/274 (64%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 75 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 134
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 135 DNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 194
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC+EG F LT RPV VEP++ D+ +GL E+ + K +F+
Sbjct: 195 KGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFH 253
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMK-- 347
K+R+ PRFA SFE+EY RWK L E+ E +++ R I R+K E EM+
Sbjct: 254 KEREQPPRFAQPGSFEYEYAMRWKALIEM-----EKQQQDQVDRNIKEAREKLEMEMEAA 308
Query: 348 --ERQA----EELKRRDEELMKK---HAEEMQLR 372
E Q ++L RR EEL + H +E+Q R
Sbjct: 309 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 342
>gi|393907787|gb|EJD74782.1| paraspeckle component 1 [Loa loa]
Length = 591
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 113/270 (41%), Positives = 176/270 (65%), Gaps = 6/270 (2%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168
KF CRL++GN+ D+ E ++ ELF P+G+ E +++ K F F+R+D + +A+ AK
Sbjct: 124 KFTGRCRLFVGNLPNDLKEQELKELFAPHGDIAECYLSG-KGFAFLRLDTRAHAESAKEA 182
Query: 169 LDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSK 228
+DG ++ GR +++RFA AA++VK L+ V+NE+L AF FG++ERA+ IVDE+G
Sbjct: 183 IDGKIIHGRPVRVRFAVHGAALRVKELSPTVSNEMLYHAFSAFGEVERAVHIVDEKGKPT 242
Query: 229 CEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEF 288
EGIVEF RKP+A +AL + E F LT S +P++VE LE DE DGL+ER I +++
Sbjct: 243 GEGIVEFERKPSANEALHQIREKVFLLTASPKPLVVEMLEPRDEDDGLAERMI-QRSAML 301
Query: 289 YKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL--AQREIDRERQKAEWEM 346
K+R+VGPRF NSFE+ +G +WK+L+E+ L +EL A+R ++ + A +
Sbjct: 302 QKEREVGPRFPPANSFEYVFGLKWKELYEVERQRRAQLEEELKEARRRLEADMDLAYQDY 361
Query: 347 KERQA-EELKRRDEELMKKHAEEMQLRLAQ 375
+ + E+L RR +EL + A + + R+AQ
Sbjct: 362 QTQLLREDLARRQQELERLEAAKRE-RMAQ 390
>gi|410906061|ref|XP_003966510.1| PREDICTED: paraspeckle component 1-like [Takifugu rubripes]
Length = 449
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 117/276 (42%), Positives = 175/276 (63%), Gaps = 7/276 (2%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ D+T+ + +F YG E+F+N+E+ FGFIR++ + A+ AKA+L
Sbjct: 16 FTLRSRLFVGNLPLDMTDEEFKHMFAKYGNVNEVFVNRERGFGFIRLETRTLAEIAKAEL 75
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG V+ R ++IRF AA+ V+NL VTNELLE AF FG +ERAIV+ D++G
Sbjct: 76 DGTVMNNRPIRIRFPVHGAALTVRNLLPAVTNELLEQAFSQFGPVERAIVVTDDQGCPTG 135
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA K AA +AL C EG LT + P IVEPLE DE DG+ E+ + K P++Y
Sbjct: 136 KGIVEFANKGAARKALECCTEGALLLTTTPCPAIVEPLEHFDEEDGMPEKLV-PKIPKYY 194
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ P F+ +FEFEY SRWK LHEL + + ++L ++ I ++K E E++
Sbjct: 195 KEREQKPHFSQPGTFEFEYVSRWKALHELDKQQ-----RQLVEKSIREAKEKLEAELESA 249
Query: 350 QAE-ELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQ 384
+ E +L ++LM++ E +L + +E +RR+Q
Sbjct: 250 KNEHQLMLMTQDLMRRQEELRRLEELRNQELVRRKQ 285
>gi|47216731|emb|CAG01005.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1467
Score = 214 bits (546), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 115/276 (41%), Positives = 172/276 (62%), Gaps = 7/276 (2%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL +GN+ D+TE + +F YG E+FIN+E+ FGFI+++ + A+ AKA+L
Sbjct: 81 FTQRSRLLVGNLPLDMTEEEFKNMFAKYGNINEVFINRERGFGFIQLETRTLAEIAKAEL 140
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG VLK R ++IRF +AA+ V+NL VTNELLE AF FG +ERAIV+ D++
Sbjct: 141 DGTVLKERPIRIRFPIHSAALSVRNLLPAVTNELLEQAFSQFGPVERAIVVTDDQDCPTG 200
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA K AA +AL C EG LT + P IVEPLE D+ DG+ E+ + K P++Y
Sbjct: 201 KGIVEFANKAAARKALECCTEGALLLTTTPCPAIVEPLEHFDDEDGMPEKLV-PKVPKYY 259
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ P F+ +FEFEY RWK L E+ + + ++L + I ++K E E++
Sbjct: 260 KEREQKPHFSQPGTFEFEYVCRWKALQEIDKQQ-----RQLVDKNIREAKEKLEAELESA 314
Query: 350 QAE-ELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQ 384
+ E +L ++LM++ E +L + +E +RR+Q
Sbjct: 315 KNEHQLMLMTQDLMRRQKELRRLEELRNQELVRRKQ 350
>gi|444727510|gb|ELW67998.1| Non-POU domain-containing octamer-binding protein [Tupaia
chinensis]
Length = 310
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 116/256 (45%), Positives = 170/256 (66%), Gaps = 9/256 (3%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 61 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 120
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 121 DNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 180
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC+EG F LT RPV VEP++ D+ +GL E+ + K +F+
Sbjct: 181 KGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFH 239
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA SFE+EY RWK L E+ E +++ R I R+K E EM+
Sbjct: 240 KEREQPPRFAQPGSFEYEYAMRWKALIEM-----EKQQQDQVDRNIKEAREKLEMEMEAA 294
Query: 350 QAEE---LKRRDEELM 362
+ E L R+ E+++
Sbjct: 295 RHEHQGLLMRQGEDIL 310
>gi|23712|emb|CAA34747.1| myoblast antigen 24.1D5 [Homo sapiens]
Length = 396
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 121/251 (48%), Positives = 163/251 (64%), Gaps = 9/251 (3%)
Query: 133 LFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKV 192
LF YGE E+FINK K FGFI+++ + A+ AKA+LD ++GR L++RFA AA+ V
Sbjct: 5 LFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAELDDTPMRGRQLRVRFATHAAALSV 64
Query: 193 KNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGC 252
+NL+ V+NELLE AF FG IERA+VIVD+RG S +GIVEFA KPAA +A RC+EG
Sbjct: 65 RNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFASKPAARKAFERCSEGV 124
Query: 253 FFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRW 312
F LT + RPVIVEPLE D+ DGL E+ + +K P + K+R+ PRFA +FE+EY RW
Sbjct: 125 FLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQKERETPPRFAQHGTFEYEYSQRW 183
Query: 313 KQLHELYEHETEMLRKELAQREIDRERQKAEWEMKERQA----EELKRRDEELMKK---H 365
K L E+ + + E + K + + D+ + E E QA ++L RR EEL + H
Sbjct: 184 KSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEHQANLLRQDLMRRQEELRRMEELH 242
Query: 366 AEEMQLRLAQQ 376
+EMQ R Q
Sbjct: 243 NQEMQKRKEMQ 253
>gi|148235052|ref|NP_001080735.1| non-POU domain containing, octamer-binding [Xenopus laevis]
gi|28175300|gb|AAH45128.1| P54nrb protein [Xenopus laevis]
Length = 464
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 123/293 (41%), Positives = 188/293 (64%), Gaps = 20/293 (6%)
Query: 92 QGPTLDLP----PSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINK 147
+G T+DL PSE F RL++GN+ D+TE ++ +LF+ +G+ E+FI+K
Sbjct: 47 EGVTIDLKNFRKPSE-----KTFTQRSRLFVGNLPSDVTEEEMRKLFEKFGKAGEIFIHK 101
Query: 148 EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELA 207
+K FGFIR++ + A+ AKA+LD L+G+ L++RFA +AA+ VKN+ V+NELLE A
Sbjct: 102 DKGFGFIRLETRTLAEIAKAELDNLPLRGKQLRVRFACHSAALSVKNIPQFVSNELLEEA 161
Query: 208 FGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPL 267
F +FG +ERA+VIVD+RG S +GIVEFA KP+A +AL RC +G + LT RP+ VEP+
Sbjct: 162 FSMFGQVERAVVIVDDRGRSTGKGIVEFASKPSARKALDRCKDGAYLLTAFPRPITVEPM 221
Query: 268 ELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLR 327
+ D+ +GL ++ + K +K+R+ PRFA SFE+EY RWK L ++ + + + +
Sbjct: 222 DQLDDEEGLPDKLLVKNQ-MCHKEREQPPRFAQPGSFEYEYAMRWKALIDMEKQQQQQVD 280
Query: 328 KEL--AQREIDRERQKAEWE---MKERQAEELKRRDEELMKK---HAEEMQLR 372
+ + AQ +++ E + A E M RQ +L RR EEL + H +E+Q R
Sbjct: 281 RNIKEAQEKMEIEMEAARHEHQVMLMRQ--DLMRRQEELHRMEELHNQEIQKR 331
>gi|83642781|dbj|BAE54372.1| 54 kD nuclear RNA-binding protein [Xenopus laevis]
Length = 463
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 123/293 (41%), Positives = 188/293 (64%), Gaps = 20/293 (6%)
Query: 92 QGPTLDLP----PSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINK 147
+G T+DL PSE F RL++GN+ D+TE ++ +LF+ +G+ E+FI+K
Sbjct: 46 EGVTIDLKNFRKPSE-----KTFTQRSRLFVGNLPSDVTEEEMRKLFEKFGKAGEIFIHK 100
Query: 148 EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELA 207
+K FGFIR++ + A+ AKA+LD L+G+ L++RFA +AA+ VKN+ V+NELLE A
Sbjct: 101 DKGFGFIRLETRTLAEIAKAELDNLPLRGKQLRVRFACHSAALSVKNIPQFVSNELLEEA 160
Query: 208 FGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPL 267
F +FG +ERA+VIVD+RG S +GIVEFA KP+A +AL RC +G + LT RP+ VEP+
Sbjct: 161 FSMFGQVERAVVIVDDRGRSTGKGIVEFASKPSARKALDRCKDGAYLLTAFPRPITVEPM 220
Query: 268 ELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLR 327
+ D+ +GL ++ + K +K+R+ PRFA SFE+EY RWK L ++ + + + +
Sbjct: 221 DQLDDEEGLPDKLLVKNQ-MCHKEREQPPRFAQPGSFEYEYAMRWKALIDMEKQQQQQVD 279
Query: 328 KEL--AQREIDRERQKAEWE---MKERQAEELKRRDEELMKK---HAEEMQLR 372
+ + AQ +++ E + A E M RQ +L RR EEL + H +E+Q R
Sbjct: 280 RNIKEAQEKMEIEMEAARHEHQVMLMRQ--DLMRRQEELHRMEELHNQEIQKR 330
>gi|324503354|gb|ADY41460.1| Paraspeckle component 1 [Ascaris suum]
Length = 579
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 129/342 (37%), Positives = 195/342 (57%), Gaps = 36/342 (10%)
Query: 54 RGGYRGNRPDGRGSDMNESRMGGGG-----------------GGDRYFTEKIMAIQGPTL 96
RG RP R SD N S GG G + ++M
Sbjct: 42 RGTPSSERPHHRSSDQNSSSGGGQQRGHGGGGGGGGRAMSMLSGQAFSENELMT------ 95
Query: 97 DLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRM 156
DLP KF CRL++GN+ D+ E ++ ELF P+G+ E +++ K F F+RM
Sbjct: 96 DLP-------KKKFTGRCRLFVGNLPNDLKEEELKELFSPHGDIAECYLSG-KGFAFLRM 147
Query: 157 DYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIER 216
D + +A+ AK +DG ++ R +++RFA AA++VK L++ V+NE+L AF FG++ER
Sbjct: 148 DTRAHAESAKEAIDGKMIHNRPVRVRFAVHGAALRVKELSATVSNEMLYHAFSAFGEVER 207
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGL 276
A+ IVDE+G EGIVEF RKP+A +AL + + F LT S +P++VE LE DE DGL
Sbjct: 208 AVHIVDEKGRPTGEGIVEFERKPSANEALHQIRDKVFLLTSSPKPLVVEMLEPRDEDDGL 267
Query: 277 SERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL--AQRE 334
+ER I + + K+R++GPRF NSFEF +G +WK+L+E+ L +EL A+R
Sbjct: 268 AERMIPRNA-QLQKERELGPRFPPSNSFEFVFGQKWKELYEVERQRRAQLEEELKEARRR 326
Query: 335 IDRERQKAEWEMKERQA-EELKRRDEELMKKHAEEMQLRLAQ 375
+D + + A + + + E+L RR +EL ++ E + R+AQ
Sbjct: 327 LDADMELAYQDYQTQMLREDLARRQQEL-ERLEEAKRQRMAQ 367
>gi|380258957|pdb|3SDE|B Chain B, Crystal Structure Of A Paraspeckle-Protein Heterodimer,
Pspc1NONO
Length = 261
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 111/238 (46%), Positives = 161/238 (67%), Gaps = 6/238 (2%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 19 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 78
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 79 DNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 138
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC+EG F LT RPV VEP++ D+ +GL E+ + K +F+
Sbjct: 139 KGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFH 197
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMK 347
K+R+ PRFA SFE+EY RWK L E+ + + + + R I R+K E EM+
Sbjct: 198 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQV-----DRNIKEAREKLEMEME 250
>gi|45433582|ref|NP_991398.1| non-POU domain containing, octamer-binding [Xenopus (Silurana)
tropicalis]
gi|42490832|gb|AAH66129.1| hypothetical protein MGC75848 [Xenopus (Silurana) tropicalis]
gi|89273854|emb|CAJ81640.1| non-POU domain containing, octamer-binding [Xenopus (Silurana)
tropicalis]
Length = 465
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 116/271 (42%), Positives = 179/271 (66%), Gaps = 11/271 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ RL++GN+ D+TE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AKA+L
Sbjct: 65 YTQRSRLFVGNLPMDVTEEEMRKLFEKYGKAGEIFIHKDKGFGFIRLETRTLAEIAKAEL 124
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ VKN+ V+NELLE AF +FG +ER +VIVD+RG S
Sbjct: 125 DNLPLRGKQLRVRFACHSASLSVKNIPQFVSNELLEEAFSIFGQVERTVVIVDDRGRSTG 184
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KP+A +AL RC++G + LT RP+ VEP++ D+ +GL E+ + K
Sbjct: 185 KGIVEFASKPSARKALDRCSDGAYLLTSFPRPITVEPMDQLDDEEGLPEKLLVKNQ-MCQ 243
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL--AQREIDRERQKAEWE-- 345
++R+ PRFA SFE+EY RWK L E+ + + E + + + AQ +++ E + A E
Sbjct: 244 REREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQEQVDRNIKEAQEKMEIEMEAARHEHQ 303
Query: 346 -MKERQAEELKRRDEELMKK---HAEEMQLR 372
M RQ +L RR EEL + H++E+Q R
Sbjct: 304 VMLMRQ--DLMRRQEELRRMEELHSQEVQKR 332
>gi|324503776|gb|ADY41634.1| Paraspeckle component 1 [Ascaris suum]
Length = 486
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 113/270 (41%), Positives = 176/270 (65%), Gaps = 6/270 (2%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168
KF CRL++GN+ D+ E ++ ELF P+G+ E +++ K F F+RMD + +A+ AK
Sbjct: 8 KFTGRCRLFVGNLPNDLKEEELKELFSPHGDIAECYLSG-KGFAFLRMDTRAHAESAKEA 66
Query: 169 LDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSK 228
+DG ++ R +++RFA AA++VK L++ V+NE+L AF FG++ERA+ IVDE+G
Sbjct: 67 IDGKMIHNRPVRVRFAVHGAALRVKELSATVSNEMLYHAFSAFGEVERAVHIVDEKGRPT 126
Query: 229 CEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEF 288
EGIVEF RKP+A +AL + + F LT S +P++VE LE DE DGL+ER I + +
Sbjct: 127 GEGIVEFERKPSANEALHQIRDKVFLLTSSPKPLVVEMLEPRDEDDGLAERMIPRNA-QL 185
Query: 289 YKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL--AQREIDRERQKAEWEM 346
K+R++GPRF NSFEF +G +WK+L+E+ L +EL A+R +D + + A +
Sbjct: 186 QKERELGPRFPPSNSFEFVFGQKWKELYEVERQRRAQLEEELKEARRRLDADMELAYQDY 245
Query: 347 KERQA-EELKRRDEELMKKHAEEMQLRLAQ 375
+ + E+L RR +EL ++ E + R+AQ
Sbjct: 246 QTQMLREDLARRQQEL-ERLEEAKRQRMAQ 274
>gi|341879760|gb|EGT35695.1| CBN-PSF-1 protein [Caenorhabditis brenneri]
Length = 525
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 113/264 (42%), Positives = 171/264 (64%), Gaps = 11/264 (4%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168
KF CRL++GN+ ++ E ++ ELF P+G+ E +++ K F F+R+D + +A+ AK
Sbjct: 103 KFTGRCRLFVGNLPNEVKEAELKELFSPHGDIAECYLSG-KGFAFLRLDTRAHAESAKEA 161
Query: 169 LDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSK 228
+DG ++ GR +++RFA AAI+VK L+ V+NE+L AF FGD+ERA+ IVDE+G
Sbjct: 162 IDGRIIHGRQVRVRFAVHGAAIRVKELSPTVSNEMLYHAFSHFGDVERAVHIVDEKGRPT 221
Query: 229 CEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEF 288
EGIVEF RKP +A+ E F LT S +P+I E LE DE DGL+ER I +TP
Sbjct: 222 GEGIVEFERKPNCNEAMAAIREKVFLLTASPKPLICEVLEPRDEDDGLAERMI-PRTPGL 280
Query: 289 YKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEM-- 346
K+R++GPRF T NSFE+ YG +WK+L+++ + L +EL + R R +++ E+
Sbjct: 281 SKERELGPRFPTQNSFEYVYGMKWKELYDVEKKRRAALDEELRE---SRRRLESDMELAY 337
Query: 347 KERQA----EELKRRDEELMKKHA 366
++ QA E+L+RR +EL + A
Sbjct: 338 QDYQAQMLREDLQRRQQELERLEA 361
>gi|212645772|ref|NP_498295.3| Protein PSF-1, isoform a [Caenorhabditis elegans]
gi|373219560|emb|CCD68787.1| Protein PSF-1, isoform a [Caenorhabditis elegans]
Length = 562
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 112/264 (42%), Positives = 170/264 (64%), Gaps = 11/264 (4%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168
KF CRL++GN+ ++ E ++ ELF P+G+ E +++ K F F+R+D + +A+ AK
Sbjct: 111 KFTGRCRLFVGNLPNEVKETELKELFSPHGDIAECYLSG-KGFAFLRLDTRAHAESAKEA 169
Query: 169 LDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSK 228
+DG ++ GR +++RFA AAI+VK L+ V+NE+L AF FGD+ERA+ IVDE+G
Sbjct: 170 IDGRIIHGRQVRVRFAVHGAAIRVKELSPTVSNEMLYHAFSHFGDVERAVHIVDEKGRPT 229
Query: 229 CEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEF 288
EGIVEF RKP +A+ + F LT S +P+I E LE DE DGL+ER I +TP
Sbjct: 230 GEGIVEFERKPNCNEAMAAIRDKVFLLTASPKPLICEVLEPRDEDDGLAERMI-PRTPGL 288
Query: 289 YKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEM-- 346
K+R++GPRF T NSFE+ YG +WK+L+ + + L +EL + R R +++ E+
Sbjct: 289 SKERELGPRFPTPNSFEYVYGMKWKELYVVEQKRRAQLDEELRE---SRRRLESDMELAY 345
Query: 347 KERQA----EELKRRDEELMKKHA 366
++ QA E+L+RR +EL + A
Sbjct: 346 QDYQAQMLREDLQRRQQELERLEA 369
>gi|308497584|ref|XP_003110979.1| CRE-PSF-1 protein [Caenorhabditis remanei]
gi|308242859|gb|EFO86811.1| CRE-PSF-1 protein [Caenorhabditis remanei]
Length = 538
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 113/264 (42%), Positives = 171/264 (64%), Gaps = 11/264 (4%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168
KF CRL++GN+ ++ E ++ ELF P+G+ E +++ K F F+R+D + +A+ AK
Sbjct: 106 KFTGRCRLFVGNLPNEVKETELKELFSPHGDIAECYLSG-KGFAFLRLDTRAHAESAKEA 164
Query: 169 LDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSK 228
+DG ++ GR +++RFA AAI+VK L+ V+NE+L AF FGD+ERA+ IVDE+G
Sbjct: 165 IDGRIIHGRQVRVRFAVHGAAIRVKELSPTVSNEMLYHAFSHFGDVERAVHIVDEKGRPT 224
Query: 229 CEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEF 288
EGIVEF RKP +A+ E F LT S +P+I E LE DE DGL+ER I +TP
Sbjct: 225 GEGIVEFERKPNCNEAMAAIREKVFLLTASPKPLICEVLEPRDEDDGLAERMI-PRTPGL 283
Query: 289 YKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEM-- 346
K+R++GPRF T NSFE+ YG +WK+L+++ + L +EL + R R +++ E+
Sbjct: 284 SKERELGPRFPTQNSFEYVYGMKWKELYDVEKKRRAALDEELRE---SRRRLESDMELAY 340
Query: 347 KERQA----EELKRRDEELMKKHA 366
++ QA E+L+RR +EL + A
Sbjct: 341 QDYQAQMLREDLQRRQQELERLEA 364
>gi|349605583|gb|AEQ00776.1| Paraspeckle component 1-like protein, partial [Equus caballus]
Length = 291
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 113/234 (48%), Positives = 156/234 (66%), Gaps = 12/234 (5%)
Query: 129 DIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINA 188
D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+LDG +LK R L+IRFA A
Sbjct: 2 DFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGA 61
Query: 189 AIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
A+ VKNL+ V+NELLE AF FG +E+A+V+VD+RG + +G VEFA KP A +AL RC
Sbjct: 62 ALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERC 121
Query: 249 AEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEY 308
+G F LT + RPVIVEP+E D+ DGL E+ + +KT +++K+R+ PRFA +FEFEY
Sbjct: 122 GDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM-QKTQQYHKEREQPPRFAQPGTFEFEY 180
Query: 309 GSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKERQAEELKRRDEELM 362
SRWK L E+ E ++E R I ++K E EM E R + +LM
Sbjct: 181 ASRWKALDEM-----EKQQREQVDRNIREAKEKLEAEM------EAARHEHQLM 223
>gi|268571879|ref|XP_002641173.1| Hypothetical protein CBG09034 [Caenorhabditis briggsae]
Length = 529
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 113/264 (42%), Positives = 169/264 (64%), Gaps = 11/264 (4%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168
KF CRL++GN+ ++ E ++ ELF P+G+ E +++ K F F+R+D + +A+ AK
Sbjct: 101 KFTGRCRLFVGNLPNEVKEAELKELFSPHGDIAECYLSG-KGFAFLRLDTRAHAESAKEA 159
Query: 169 LDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSK 228
+DG ++ GR +++RFA AAI+VK L+ V+NE+L AF FGD+ERA+ IVDE+G
Sbjct: 160 IDGRIIHGRQVRVRFAVHGAAIRVKELSPTVSNEMLYHAFSHFGDVERAVHIVDEKGRPT 219
Query: 229 CEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEF 288
EGIVEF RKP +A+ E F LT S +P+I E LE DE DGL+ER I +TP
Sbjct: 220 GEGIVEFERKPNCNEAMAAIREKVFLLTASPKPLICEVLEPRDEDDGLAERMI-PRTPGL 278
Query: 289 YKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEM-- 346
K+R++GPRF NSFE+ YG +WK+L+++ + L +EL R R +A+ E+
Sbjct: 279 SKERELGPRFPAQNSFEYVYGMKWKELYDVEQKRRAALDEELRD---SRRRLEADMELAY 335
Query: 347 KERQA----EELKRRDEELMKKHA 366
++ QA E+L+RR +EL + A
Sbjct: 336 QDYQAQMLREDLQRRQQELERLEA 359
>gi|340382048|ref|XP_003389533.1| PREDICTED: paraspeckle component 1-like [Amphimedon queenslandica]
Length = 428
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 117/285 (41%), Positives = 173/285 (60%), Gaps = 5/285 (1%)
Query: 98 LPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMD 157
+P E ++ KF N R+Y+GN+ +TE +++ELF P+GE +++ KEK FGF RM
Sbjct: 63 IPDPEGGRREKKFGNRARVYIGNLPRGMTEEELMELFSPHGEVSRVYLEKEKNFGFARMA 122
Query: 158 YKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERA 217
Y+ A KA + L+G LKGR L++RFA + ++KV NL V+NELL AFG FG++E A
Sbjct: 123 YRDQAMKAISSLNGINLKGRELRVRFAASSCSVKVSNLHPTVSNELLFNAFGTFGEVEHA 182
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLS 277
+V+ DERG S G V+FA+K A A+ RC +G F LT+S PV+V L +E DGL+
Sbjct: 183 VVVTDERGKSLGHGFVDFAKKTQAMAAIDRCRQGVFLLTKSPVPVVVSELVRENEDDGLA 242
Query: 278 ERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDR 337
ER INK +++ +R PR A + EF++G R+K+L++ + E L K L + R
Sbjct: 243 ERDINKSA-QYHYERDSIPRMAVPGTPEFDFGMRFKELYDNEQRSKEQLDKTLKE---TR 298
Query: 338 ERQKAEWE-MKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLR 381
ER +AE E K + + R +K E +Q RL + E+ +R
Sbjct: 299 ERLEAEMEQFKHHEHANVLRLQLAEYQKEQELIQQRLHRHEQFIR 343
>gi|241044157|ref|XP_002407175.1| proline and glutamine-rich splicing factor (SFPQ), putative [Ixodes
scapularis]
gi|215492127|gb|EEC01768.1| proline and glutamine-rich splicing factor (SFPQ), putative [Ixodes
scapularis]
Length = 332
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 110/252 (43%), Positives = 162/252 (64%), Gaps = 5/252 (1%)
Query: 106 KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKA 165
+D K CRL++GN+ G +E ++ ++F+ +GE QE F+N EK FGF++M A+ A
Sbjct: 35 RDEKPGGRCRLFVGNLPGSTSEEELRKMFEEHGEVQETFLNAEKGFGFVKMGSYEAAEAA 94
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERG 225
KA LD ++GR +++RFA + V+NL V+NELLE AF +FG++ERA+V+VD+RG
Sbjct: 95 KAALDEAPVEGRRIQVRFATQGTCLSVRNLGPWVSNELLESAFSMFGEVERAVVVVDDRG 154
Query: 226 NSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKT 285
S EGIVEFARKPAA AL+RC EGCF LT RP+ EPLE D + GL ER+++++
Sbjct: 155 RSVGEGIVEFARKPAAQAALKRCLEGCFLLTSEPRPIWAEPLEYRDWVLGLPERSVSRRG 214
Query: 286 PEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWE 345
+ ++R+VGPRFA + E RWK+ + + + L K LA+ ER+K E E
Sbjct: 215 RGYAREREVGPRFARPGTQEHRVAERWKRFLDFEREKRDELEKVLAE-----ERRKLEEE 269
Query: 346 MKERQAEELKRR 357
+ + E++ R
Sbjct: 270 VDRYRREQMVER 281
>gi|32564998|ref|NP_871666.1| Protein PSF-1, isoform d [Caenorhabditis elegans]
gi|373219559|emb|CCD68786.1| Protein PSF-1, isoform d [Caenorhabditis elegans]
Length = 374
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 106/249 (42%), Positives = 162/249 (65%), Gaps = 7/249 (2%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168
KF CRL++GN+ ++ E ++ ELF P+G+ E +++ K F F+R+D + +A+ AK
Sbjct: 111 KFTGRCRLFVGNLPNEVKETELKELFSPHGDIAECYLSG-KGFAFLRLDTRAHAESAKEA 169
Query: 169 LDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSK 228
+DG ++ GR +++RFA AAI+VK L+ V+NE+L AF FGD+ERA+ IVDE+G
Sbjct: 170 IDGRIIHGRQVRVRFAVHGAAIRVKELSPTVSNEMLYHAFSHFGDVERAVHIVDEKGRPT 229
Query: 229 CEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEF 288
EGIVEF RKP +A+ + F LT S +P+I E LE DE DGL+ER I +TP
Sbjct: 230 GEGIVEFERKPNCNEAMAAIRDKVFLLTASPKPLICEVLEPRDEDDGLAERMI-PRTPGL 288
Query: 289 YKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEM-- 346
K+R++GPRF T NSFE+ YG +WK+L+ + + L +EL + R R +++ E+
Sbjct: 289 SKERELGPRFPTPNSFEYVYGMKWKELYVVEQKRRAQLDEELRE---SRRRLESDMELAY 345
Query: 347 KERQAEELK 355
++ QA+ L+
Sbjct: 346 QDYQAQMLR 354
>gi|326933079|ref|XP_003212637.1| PREDICTED: splicing factor, proline- and glutamine-rich-like
[Meleagris gallopavo]
Length = 348
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 120/272 (44%), Positives = 169/272 (62%), Gaps = 32/272 (11%)
Query: 145 INKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELL 204
INK K FGFI+++ + A+ AKA+LD ++GR L++RFA AA+ V+NL+ V+NELL
Sbjct: 8 INKGKGFGFIKLESRALAEIAKAELDDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELL 67
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264
E AF FG +ERA+VIVD+RG S +GIVEFA KPAA +A RC EG F LT + RPVIV
Sbjct: 68 EEAFSQFGPVERAVVIVDDRGRSTGKGIVEFASKPAARKAFERCTEGVFLLTTTPRPVIV 127
Query: 265 EPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHEL------ 318
EPLE D+ DGL E+ + +K P + K+R+ PRFA SFEFEY RWK L E+
Sbjct: 128 EPLEQLDDEDGLPEK-LAQKNPMYQKERETPPRFAQPGSFEFEYSQRWKSLDEMEKQQRE 186
Query: 319 ---------------------YEHETEMLRKELAQR--EIDRERQKAEWEMKERQAEELK 355
+EH+ +LR++L +R E+ R + EM++R+ E++
Sbjct: 187 QVAKNMKDAKDKLESEMEDAYHEHQANLLRQDLMRRQEELRRMEELHNQEMQKRK--EIQ 244
Query: 356 RRDEELMKKHAEEMQLRLAQQEEDLRRRQNDN 387
R EE ++ EEM +R + EE +RR++ +N
Sbjct: 245 LRQEEERRRREEEMMIRQREMEEQMRRQREEN 276
>gi|402590487|gb|EJW84417.1| hypothetical protein WUBG_04674 [Wuchereria bancrofti]
Length = 304
Score = 202 bits (513), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 100/224 (44%), Positives = 151/224 (67%), Gaps = 2/224 (0%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168
KF CRL++GN+ D+ E ++ ELF P+G+ E +++ K F F+R+D + +A+ AK
Sbjct: 28 KFTGRCRLFVGNLPNDLKEQELKELFAPHGDIAECYLSG-KGFAFLRLDTRAHAESAKEA 86
Query: 169 LDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSK 228
+DG ++ GR +++RFA AA++VK L+ V+NE+L AF FG++ERA+ IVDE+G
Sbjct: 87 IDGKIIHGRPVRVRFAVHGAALRVKELSPTVSNEMLYHAFSAFGEVERAVHIVDEKGKPT 146
Query: 229 CEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEF 288
EGIVEF RKP+A +AL + E F LT S +P++VE LE DE DGL+ER I +++
Sbjct: 147 GEGIVEFERKPSANEALHQIREKVFLLTASPKPLVVEMLEPRDEDDGLAERMI-QRSAML 205
Query: 289 YKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQ 332
K+R+VGPRF NSFE+ +G +WK+L+E+ L +EL +
Sbjct: 206 QKEREVGPRFPPANSFEYVFGLKWKELYEVERQRRAQLEEELKE 249
>gi|324515561|gb|ADY46243.1| Paraspeckle component 1 [Ascaris suum]
Length = 285
Score = 201 bits (512), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 103/236 (43%), Positives = 157/236 (66%), Gaps = 4/236 (1%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168
KF CRL++GN+ D+ E ++ ELF P+G+ E +++ K F F+RMD + +A+ AK
Sbjct: 22 KFTGRCRLFVGNLPNDLKEEELKELFSPHGDIAECYLSG-KGFAFLRMDTRAHAESAKEA 80
Query: 169 LDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSK 228
+DG ++ R +++RFA AA++VK L++ V+NE+L AF FG++ERA+ IVDE+G
Sbjct: 81 IDGKMIHNRPVRVRFAVHGAALRVKELSATVSNEMLYHAFSAFGEVERAVHIVDEKGRPT 140
Query: 229 CEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEF 288
EGIVEF RKP+A +AL + + F LT S +P++VE LE DE DGL+ER I + +
Sbjct: 141 GEGIVEFERKPSANEALHQIRDKVFLLTSSPKPLVVEMLEPRDEDDGLAERMIPRNA-QL 199
Query: 289 YKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL--AQREIDRERQKA 342
K+R++GPRF NSFEF +G +WK+L+E+ L +EL A+R +D + + A
Sbjct: 200 QKERELGPRFPPSNSFEFVFGQKWKELYEVERQRRAQLEEELKEARRRLDADMELA 255
>gi|224028248|ref|NP_001138882.1| non-POU domain-containing octamer-binding protein isoform 2 [Homo
sapiens]
gi|302564712|ref|NP_001181842.1| non-POU domain-containing octamer-binding protein [Macaca mulatta]
gi|332247214|ref|XP_003272749.1| PREDICTED: non-POU domain-containing octamer-binding protein
isoform 4 [Nomascus leucogenys]
gi|338729257|ref|XP_003365856.1| PREDICTED: non-POU domain-containing octamer-binding protein [Equus
caballus]
gi|410988798|ref|XP_004000664.1| PREDICTED: non-POU domain-containing octamer-binding protein
isoform 2 [Felis catus]
Length = 382
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 113/252 (44%), Positives = 163/252 (64%), Gaps = 17/252 (6%)
Query: 132 ELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIK 191
+LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +LD L+G+ L++RFA +A++
Sbjct: 3 KLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSASLT 62
Query: 192 VKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEG 251
V+NL V+NELLE AF VFG +ERA+VIVD+RG +GIVEF+ KPAA +AL RC+EG
Sbjct: 63 VRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKALDRCSEG 122
Query: 252 CFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSR 311
F LT RPV VEP++ D+ +GL E+ + K +F+K+R+ PRFA SFE+EY R
Sbjct: 123 SFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFHKEREQPPRFAQPGSFEYEYAMR 181
Query: 312 WKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKERQAE--------ELKRRDEELMK 363
WK L E+ + + + + R I R+K E EM+ + E +L RR EEL +
Sbjct: 182 WKALIEMEKQQQDQV-----DRNIKEAREKLEMEMEAARHEHQVMLMRQDLMRRQEELRR 236
Query: 364 K---HAEEMQLR 372
H +E+Q R
Sbjct: 237 MEELHNQEVQKR 248
>gi|221041662|dbj|BAH12508.1| unnamed protein product [Homo sapiens]
Length = 382
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 113/252 (44%), Positives = 163/252 (64%), Gaps = 17/252 (6%)
Query: 132 ELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIK 191
+LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +LD L+G+ L++RFA +A++
Sbjct: 3 KLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSASLT 62
Query: 192 VKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEG 251
V+NL V+NELLE AF VFG +ERA+VIVD+RG +GIVEF+ KPAA +AL RC+EG
Sbjct: 63 VRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKALDRCSEG 122
Query: 252 CFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSR 311
F LT RPV VEP++ D+ +GL E+ + K +F+K+R+ PRFA SFE+EY R
Sbjct: 123 SFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFHKEREQPPRFAQPGSFEYEYAMR 181
Query: 312 WKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKERQAE--------ELKRRDEELMK 363
WK L E+ + + + + R I R+K E EM+ + E +L RR EEL +
Sbjct: 182 WKALIEMEKQQQDQV-----DRNIKEAREKLEMEMEAARHEHQVMLMRQDLMRRQEELRR 236
Query: 364 K---HAEEMQLR 372
H +E+Q R
Sbjct: 237 MEELHNQEVQKR 248
>gi|344246848|gb|EGW02952.1| Non-POU domain-containing octamer-binding protein [Cricetulus
griseus]
Length = 613
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 115/252 (45%), Positives = 164/252 (65%), Gaps = 17/252 (6%)
Query: 132 ELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIK 191
+LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +LD L+G+ L++RFA +A++
Sbjct: 3 KLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSASLT 62
Query: 192 VKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEG 251
V+NL V+NELLE AF VFG +ERA+VIVD+RG +GIVEF+ KPAA +AL RC+EG
Sbjct: 63 VRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKALDRCSEG 122
Query: 252 CFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSR 311
F LT RPV VEP++ D+ +GL E+ + K +F+K+R+ PRFA SFE+EY R
Sbjct: 123 SFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFHKEREQPPRFAQPGSFEYEYAMR 181
Query: 312 WKQLHELYEHETEMLRKELAQREIDRERQKAEWEMK----ERQA----EELKRRDEELMK 363
WK L E+ E +++ R I R+K E EM+ E Q ++L RR EEL +
Sbjct: 182 WKALIEM-----EKQQQDQVDRNIKEAREKLEMEMEAARHEHQVMLMRQDLMRRQEELRR 236
Query: 364 K---HAEEMQLR 372
H +E+Q R
Sbjct: 237 MEELHNQEVQKR 248
>gi|426257206|ref|XP_004022223.1| PREDICTED: non-POU domain-containing octamer-binding protein
isoform 3 [Ovis aries]
Length = 382
Score = 198 bits (503), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 112/252 (44%), Positives = 163/252 (64%), Gaps = 17/252 (6%)
Query: 132 ELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIK 191
+LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +LD L+G+ L++RFA +A++
Sbjct: 3 KLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSASLT 62
Query: 192 VKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEG 251
V+NL V++ELLE AF VFG +ERA+VIVD+RG +GIVEF+ KPAA +AL RC+EG
Sbjct: 63 VRNLPQYVSSELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKALDRCSEG 122
Query: 252 CFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSR 311
F LT RPV VEP++ D+ +GL E+ + K +F+K+R+ PRFA SFE+EY R
Sbjct: 123 SFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFHKEREQPPRFAQPGSFEYEYAMR 181
Query: 312 WKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKERQAE--------ELKRRDEELMK 363
WK L E+ + + + + R I R+K E EM+ + E +L RR EEL +
Sbjct: 182 WKALIEMEKQQQDQV-----DRNIKEAREKLEMEMEAARHEHQVMLMRQDLMRRQEELRR 236
Query: 364 K---HAEEMQLR 372
H +E+Q R
Sbjct: 237 MEELHNQEVQKR 248
>gi|148697229|gb|EDL29176.1| mCG119749, isoform CRA_a [Mus musculus]
gi|148697231|gb|EDL29178.1| mCG119749, isoform CRA_a [Mus musculus]
Length = 382
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 112/252 (44%), Positives = 161/252 (63%), Gaps = 17/252 (6%)
Query: 132 ELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIK 191
+LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +LD L+G+ L++RFA +A++
Sbjct: 3 KLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSASLT 62
Query: 192 VKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEG 251
V+NL V+NELLE AF VFG +ERA+VIVD+ G +GIVEF+ KPAA +AL RC+EG
Sbjct: 63 VRNLPQYVSNELLEEAFSVFGQVERAVVIVDDLGRPSGKGIVEFSGKPAAPKALDRCSEG 122
Query: 252 CFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSR 311
F LT RPV VEP++ D+ +GL E+ + K +F+K R+ PRFA SFE+EY R
Sbjct: 123 SFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFHKVREQPPRFAQPGSFEYEYAMR 181
Query: 312 WKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKERQAE--------ELKRRDEELMK 363
WK L E+ + + + + R I R+K E EM+ + E +L RR EEL +
Sbjct: 182 WKALIEMEKQQQDQV-----DRNIKEAREKLEMEMEAARHEHQVMLMRQDLMRRQEELRR 236
Query: 364 K---HAEEMQLR 372
H +E+Q R
Sbjct: 237 MEELHNQEVQKR 248
>gi|395532344|ref|XP_003768230.1| PREDICTED: splicing factor, proline- and glutamine-rich-like
[Sarcophilus harrisii]
Length = 379
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 131/348 (37%), Positives = 193/348 (55%), Gaps = 50/348 (14%)
Query: 144 FINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNEL 203
+ NKE++ GF + KLD ++GR L++RFA AA+ V+NL+ V+NEL
Sbjct: 4 YRNKEQLLGFDS-NLALTQSPESGKLDDTPMRGRQLRVRFATHAAALSVRNLSPYVSNEL 62
Query: 204 LELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVI 263
LE AF FG IERA+VIVD+RG S +GIVEFA KPAA +A RC+EG F LT + RPVI
Sbjct: 63 LEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFASKPAARKAFERCSEGVFLLTTTPRPVI 122
Query: 264 VEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHEL----- 318
VEPLE D+ DGL E+ + +K P + K+R+ PRFA +FEFEY RWK L E+
Sbjct: 123 VEPLEQLDDEDGLPEK-LAQKHPMYQKERENPPRFAQPGTFEFEYSQRWKSLDEMERQQR 181
Query: 319 ----------------------YEHETEMLRKELAQR--EIDRERQKAEWEMKERQAEEL 354
+EH+ +LR++L +R E+ R + EM++R+ +L
Sbjct: 182 EQVEKNMKDAKDKLESEMEDASHEHQANLLRQDLMRRQEELRRMEELHNQEMQKRKERQL 241
Query: 355 KRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFL----VEQQQGRGGSGG------Y 404
++++E+L + EEM +R + EE +RR++ ++ + ++ R G+G Y
Sbjct: 242 RQKEEQLRR---EEM-IRQREMEEQMRRQKEESYSQMGYMDPRERDLRMGAGTMNMGDPY 297
Query: 405 GSPGQAY---GNAIIDFEALAAAVGNAVVGNVTGVDNKGSAMDFDQGG 449
GS Q + G I +EA A+ G++ G D + F QGG
Sbjct: 298 GSGSQKFPPVGGGGIGYEANPGVPPTALSGSMKGNDMRTER--FGQGG 343
>gi|427789717|gb|JAA60310.1| Putative proline and glutamine-rich splicing factor sfpq
[Rhipicephalus pulchellus]
Length = 408
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 105/225 (46%), Positives = 145/225 (64%)
Query: 106 KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKA 165
+D K CRL++GN+ E ++ LF +GE QE F+N EK FGF++M A+ A
Sbjct: 122 RDEKPGGRCRLFVGNLPASTGEEELRRLFSEHGEVQETFLNSEKGFGFVKMASYEAAEAA 181
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERG 225
KA LD ++ GR +++RFA + V+NL V+NELLE AF +FG++ERA+VIVD+RG
Sbjct: 182 KAALDDALVDGRRIQVRFATQGTCLSVRNLGPWVSNELLESAFSLFGEVERAVVIVDDRG 241
Query: 226 NSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKT 285
S EGIVEFARKPAA AL+RC EGCF LT RPV EPLE D + GL ERT++++
Sbjct: 242 RSVGEGIVEFARKPAAQAALKRCLEGCFLLTSEPRPVYAEPLEYRDWVLGLPERTVSRRG 301
Query: 286 PEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL 330
+ ++R++GPRFA + E RWK+ + + + E L K L
Sbjct: 302 RGYARERELGPRFARPGTQEHRVAERWKRFLDFEKDKREELEKVL 346
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 92 QGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMF 151
Q P + P P + + + R+Y+GN+ +TE+D+ EL +PYG +++F+N +K F
Sbjct: 12 QRPPIYRPKDPPPDVAL---DRSRIYIGNLPHTVTEDDVRELVEPYGAVRDVFVNSQKGF 68
Query: 152 GFIRMDYKHNADKAKAKLDGHVLKGRSLKI 181
F++MD +A+ LD ++ +GR L++
Sbjct: 69 AFVKMDSPQSAEAVVTNLDMNLRRGRRLRV 98
>gi|346465907|gb|AEO32798.1| hypothetical protein [Amblyomma maculatum]
Length = 393
Score = 194 bits (494), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 105/225 (46%), Positives = 144/225 (64%)
Query: 106 KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKA 165
+D K CRL++GN+ E ++ LF +GE QE F+N EK FGF++M A+ A
Sbjct: 107 RDEKPGGRCRLFVGNLPASTGEEELRRLFSEHGEVQETFLNAEKGFGFVKMASYEAAEAA 166
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERG 225
KA LD + GR +++RFA + V+NL V+NELLE AF +FG++ERA+VIVD+RG
Sbjct: 167 KAALDDAPVDGRRIQVRFATQGTCLSVRNLGPWVSNELLESAFSLFGEVERAVVIVDDRG 226
Query: 226 NSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKT 285
S EGIVEFARKPAA AL+RC EGCF LT RPV EPLE D + GL ERT++++
Sbjct: 227 RSVGEGIVEFARKPAAQAALKRCLEGCFLLTSEPRPVYAEPLEYRDWVLGLPERTVSRRG 286
Query: 286 PEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL 330
+ ++R++GPRFA + E RWK+ + + + E L K L
Sbjct: 287 RGYAREREMGPRFARPGTQEHRVAERWKRFLDFEKDKREELEKVL 331
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 47/70 (67%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDG 171
+ R+Y+GN+ +T++D+ EL +PYG +++F+N +K F F++MD +A+ LD
Sbjct: 14 DRSRIYIGNLPHSVTDDDVRELVEPYGAVRDVFVNSQKGFAFVKMDSPQSAEAVVTNLDM 73
Query: 172 HVLKGRSLKI 181
++ +GR L++
Sbjct: 74 NLRRGRRLRV 83
>gi|148698322|gb|EDL30269.1| mCG10912, isoform CRA_b [Mus musculus]
Length = 424
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 97/181 (53%), Positives = 129/181 (71%), Gaps = 1/181 (0%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 245 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 304
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 305 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 364
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 365 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 423
Query: 290 K 290
K
Sbjct: 424 K 424
>gi|313240136|emb|CBY32488.1| unnamed protein product [Oikopleura dioica]
Length = 552
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 107/275 (38%), Positives = 167/275 (60%), Gaps = 12/275 (4%)
Query: 114 CRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHV 173
RL++G + IT+ + ++F+ +GE +E++I + K F FI+M + AD+AK L G
Sbjct: 115 SRLFVGGLPEAITQEQVRQMFQKFGEVKEVYIPQGKTFAFIKMTNRMQADQAKYGLSGKT 174
Query: 174 LKG--RSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEG 231
+ G R ++++FA +++VKNL+ ++NE L AF FG IERA+V+VDERG S +G
Sbjct: 175 IAGQNRPIRVKFAAQGTSVEVKNLSPLISNERLYDAFSRFGKIERAVVMVDERGKSLEKG 234
Query: 232 IVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQ 291
IVEF RK +A +A+ + +GCFFLT S R V+ ++ D+ DGL E + T F ++
Sbjct: 235 IVEFDRKNSATKAIEQVNQGCFFLTMSPRAVVCAAVDSVDDADGLQEECL-YNTYGFEEE 293
Query: 292 RQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKERQA 351
PRFA +FE ++G+RWK L EL + E+++ E A+R +++ E EM
Sbjct: 294 YSFPPRFAAQETFEMDFGNRWKALEELERSQIEIVKIESAER-----KKRLEQEMHVGMG 348
Query: 352 EELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQND 386
EE +R L+++ E+ Q RL Q EE R+RQ D
Sbjct: 349 EEQER----LIRREMEQQQARLRQMEETRRQRQED 379
>gi|313225133|emb|CBY20926.1| unnamed protein product [Oikopleura dioica]
Length = 552
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 107/275 (38%), Positives = 167/275 (60%), Gaps = 12/275 (4%)
Query: 114 CRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHV 173
RL++G + IT+ + ++F+ +GE +E++I + K F FI+M + AD+AK L G
Sbjct: 115 SRLFVGGLPEAITQEQVRQMFQKFGEVKEVYIPQGKTFAFIKMTNRMQADQAKYGLSGKT 174
Query: 174 LKG--RSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEG 231
+ G R ++++FA +++VKNL+ ++NE L AF FG IERA+V+VDERG S +G
Sbjct: 175 IAGQNRPIRVKFAAQGTSVEVKNLSPLISNERLYDAFSRFGKIERAVVMVDERGKSLEKG 234
Query: 232 IVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQ 291
IVEF RK +A +A+ + +GCFFLT S R V+ ++ D+ DGL E + T F ++
Sbjct: 235 IVEFDRKNSATKAIEQVNQGCFFLTMSPRAVVCAAVDSVDDADGLQEECL-YNTYGFEEE 293
Query: 292 RQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKERQA 351
PRFA +FE ++G+RWK L EL + E+++ E A+R +++ E EM
Sbjct: 294 YSFPPRFAAQETFEMDFGNRWKALEELERSQIEIVKIESAER-----KKRLEQEMHVGMG 348
Query: 352 EELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQND 386
EE +R L+++ E+ Q RL Q EE R+RQ D
Sbjct: 349 EEQER----LIRREMEQQQARLRQMEETRRQRQED 379
>gi|402901543|ref|XP_003913708.1| PREDICTED: paraspeckle component 1-like, partial [Papio anubis]
Length = 256
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 92/174 (52%), Positives = 125/174 (71%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 78 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 137
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +E+A+V+VD+RG +
Sbjct: 138 DGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATG 197
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINK 283
+G VEFA KP A +AL RC +G F LT + RPVIVEP+E D+ DGL E+ + K
Sbjct: 198 KGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLMQK 251
>gi|148697230|gb|EDL29177.1| mCG119749, isoform CRA_b [Mus musculus]
Length = 246
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 101/216 (46%), Positives = 145/216 (67%), Gaps = 6/216 (2%)
Query: 132 ELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIK 191
+LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +LD L+G+ L++RFA +A++
Sbjct: 3 KLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSASLT 62
Query: 192 VKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEG 251
V+NL V+NELLE AF VFG +ERA+VIVD+ G +GIVEF+ KPAA +AL RC+EG
Sbjct: 63 VRNLPQYVSNELLEEAFSVFGQVERAVVIVDDLGRPSGKGIVEFSGKPAAPKALDRCSEG 122
Query: 252 CFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSR 311
F LT RPV VEP++ D+ +GL E+ + K +F+K R+ PRFA SFE+EY R
Sbjct: 123 SFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFHKVREQPPRFAQPGSFEYEYAMR 181
Query: 312 WKQLHELYEHETEMLRKELAQREIDRERQKAEWEMK 347
WK L E+ + + + + R I R+K E EM+
Sbjct: 182 WKALIEMEKQQQDQV-----DRNIKEAREKLEMEME 212
>gi|74180527|dbj|BAE34196.1| unnamed protein product [Mus musculus]
Length = 259
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 95/174 (54%), Positives = 124/174 (71%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 82 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 141
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 142 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 201
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINK 283
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ K
Sbjct: 202 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQK 255
>gi|403309252|ref|XP_003945031.1| PREDICTED: paraspeckle component 1 [Saimiri boliviensis
boliviensis]
Length = 413
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 100/213 (46%), Positives = 138/213 (64%), Gaps = 12/213 (5%)
Query: 150 MFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFG 209
MF + + + A+ AKA+LDG +LK R L+IRFA AA+ VKNL+ V+NELLE AF
Sbjct: 1 MFSLPKKESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFS 60
Query: 210 VFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLEL 269
FG +E+A+V+VD+RG + +G VEFA KP A +AL RC +G F LT + RPVIVEP+E
Sbjct: 61 QFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQ 120
Query: 270 TDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKE 329
D+ DGL E+ + +KT +++K+R+ PRFA +FEFEY SRWK L E+ E ++E
Sbjct: 121 FDDEDGLPEKLM-QKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEM-----EKQQRE 174
Query: 330 LAQREIDRERQKAEWEMKERQAEELKRRDEELM 362
R I ++K E EM E R + +LM
Sbjct: 175 QVDRNIREAKEKLEAEM------EAARHEHQLM 201
>gi|326914371|ref|XP_003203499.1| PREDICTED: paraspeckle component 1-like, partial [Meleagris
gallopavo]
Length = 403
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 98/209 (46%), Positives = 138/209 (66%), Gaps = 12/209 (5%)
Query: 154 IRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGD 213
++ + + A+ AKA+LDG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG
Sbjct: 1 LKKESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGP 60
Query: 214 IERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEI 273
+ERA+V+VD+RG + +G VEFA KP A +AL RC++G F LT + RPV+VEP+E D+
Sbjct: 61 VERAVVVVDDRGRATGKGFVEFAAKPPARKALERCSDGAFLLTTTPRPVVVEPMEQFDDE 120
Query: 274 DGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQR 333
DGL E+ + +KT +++K+R+ PRFA +FEFEY SRWK L E+ E ++E R
Sbjct: 121 DGLPEKLM-QKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDR 174
Query: 334 EIDRERQKAEWEMKERQAEELKRRDEELM 362
I ++K E EM E R + +LM
Sbjct: 175 NIREAKEKLEAEM------EAARHEHQLM 197
>gi|449663759|ref|XP_002166834.2| PREDICTED: splicing factor, proline- and glutamine-rich-like [Hydra
magnipapillata]
Length = 520
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 107/275 (38%), Positives = 161/275 (58%), Gaps = 10/275 (3%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168
KF+ CRL++ N+ TE D+ +LF P+GE E+++NKEK FGFIR+DY+HNA+ AK +
Sbjct: 85 KFSGRCRLFVANLHNSTTEADLRQLFSPFGEIGEVYVNKEKGFGFIRLDYRHNAEVAKCR 144
Query: 169 LDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSK 228
LD V KGR L++RFA +AI++ L +NE +E A FG +ER +V+ +ERG SK
Sbjct: 145 LDKTVFKGRVLQVRFATHASAIELHGLDRFASNEYIEQAMSAFGSVERVVVVCNERGYSK 204
Query: 229 CEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEF 288
IVEF K +A + L R + F L + +P+ +P D+ +G+ E ++ K +
Sbjct: 205 GHAIVEFEWKKSAQKVLDRFKDEMFVLGRLPKPIFAKPFLQQDDEEGIHESEVS-KFQGY 263
Query: 289 YKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKE 348
+R+ PRF NSFE+ + +WK L+ E + L +EL + E E E
Sbjct: 264 SVEREYTPRFIPPNSFEYIWAKKWKDLYLEEEGKKAKLEQELQDARFNLEN---EMEAAS 320
Query: 349 RQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRR 383
RQ + ++ R EEL+++ E L Q EEDL+RR
Sbjct: 321 RQQDAVRIR-EELLRRQEE-----LRQIEEDLQRR 349
>gi|345319024|ref|XP_001518809.2| PREDICTED: paraspeckle component 1-like [Ornithorhynchus anatinus]
Length = 407
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 98/201 (48%), Positives = 133/201 (66%), Gaps = 12/201 (5%)
Query: 162 ADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIV 221
A+ AKA+LDG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +E+A+V+V
Sbjct: 14 AEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVV 73
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTI 281
D+RG + +G VEFA KP A +AL RC +G F LT + RPVIVEP+E D+ DGL E+ +
Sbjct: 74 DDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM 133
Query: 282 NKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQK 341
+KT +++K+R+ PRFA +FEFEY SRWK L E+ E ++E R I ++K
Sbjct: 134 -QKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEK 187
Query: 342 AEWEMKERQAEELKRRDEELM 362
E EM E R + +LM
Sbjct: 188 LEAEM------EAARHEHQLM 202
>gi|355700858|gb|EHH28879.1| Paraspeckle protein 1 [Macaca mulatta]
Length = 459
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 99/202 (49%), Positives = 135/202 (66%), Gaps = 7/202 (3%)
Query: 162 ADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIV 221
A+ AKA+LDG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +E+A+V+V
Sbjct: 66 AEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVV 125
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTI 281
D+RG + +G VEFA KP A +AL RC +G F LT + RPVIVEP+E D+ DGL E+ +
Sbjct: 126 DDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM 185
Query: 282 NKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQK 341
+KT +++K+R+ PRFA +FEFEY SRWK L E+ E ++E R I ++K
Sbjct: 186 -QKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEK 239
Query: 342 AEWEMK-ERQAEELKRRDEELM 362
E EM+ R +L +ELM
Sbjct: 240 LEAEMEAARHEHQLMLMRQELM 261
>gi|444725433|gb|ELW65998.1| Splicing factor, proline- and glutamine-rich [Tupaia chinensis]
Length = 292
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 107/222 (48%), Positives = 143/222 (64%), Gaps = 17/222 (7%)
Query: 162 ADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIV 221
A+ AKA+LD ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIV
Sbjct: 25 AEIAKAELDDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIV 84
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTI 281
D+RG S +GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ +
Sbjct: 85 DDRGRSTGKGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-L 143
Query: 282 NKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQK 341
+K P + K+R+ PRFA +FE+EY RWK L E+ + + E + K + + K
Sbjct: 144 AQKNPMYQKERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKD-----AKDK 198
Query: 342 AEWEMK----ERQA----EELKRRDEELMKK---HAEEMQLR 372
E EM+ E QA ++L RR EEL + H +EMQ R
Sbjct: 199 LESEMEDAYHEHQANLLRQDLMRRQEELRRMEELHNQEMQKR 240
>gi|194221757|ref|XP_001488693.2| PREDICTED: paraspeckle component 1-like [Equus caballus]
Length = 540
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 98/201 (48%), Positives = 133/201 (66%), Gaps = 12/201 (5%)
Query: 162 ADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIV 221
A+ AKA+LDG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +E+A+V+V
Sbjct: 147 AEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVV 206
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTI 281
D+RG + +G VEFA KP A +AL RC +G F LT + RPVIVEP+E D+ DGL E+ +
Sbjct: 207 DDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM 266
Query: 282 NKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQK 341
+KT +++K+R+ PRFA +FEFEY SRWK L E+ E ++E R I ++K
Sbjct: 267 -QKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEK 320
Query: 342 AEWEMKERQAEELKRRDEELM 362
E EM E R + +LM
Sbjct: 321 LEAEM------EAARHEHQLM 335
>gi|196005557|ref|XP_002112645.1| hypothetical protein TRIADDRAFT_56865 [Trichoplax adhaerens]
gi|190584686|gb|EDV24755.1| hypothetical protein TRIADDRAFT_56865 [Trichoplax adhaerens]
Length = 403
Score = 184 bits (467), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 102/265 (38%), Positives = 154/265 (58%), Gaps = 19/265 (7%)
Query: 114 CRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHV 173
CRL++GN+ D EN++ +LF+ YG+ E +KEK + F++MD NA++AK +LDG
Sbjct: 13 CRLFVGNLA-DCDENEVRQLFQQYGQVLECSASKEKSYAFVKMDTTENANRAKLELDGKK 71
Query: 174 LKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIV 233
+K R L++RFA N+ I V NL VTNELL F FG I RA+VIVD RG S G+V
Sbjct: 72 VKNRLLRVRFASSNSTIVVSNLNQYVTNELLRQGFEKFGKIHRAVVIVDMRGKSSGRGLV 131
Query: 234 EFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQ 293
EF+ K + A++ C E LT+S+RPV V LE D+ DGL ER + + + K+
Sbjct: 132 EFSHKKESMAAIKECTENALLLTRSMRPVTVRSLEAEDDEDGLPERVV-RNNAAYQKEWS 190
Query: 294 VGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKERQAEE 353
V PR NS E+E+ RWK L +++ +RQ + +MK + ++
Sbjct: 191 VSPRIVKRNSREWEFIQRWKDL----------------DKDLKEQRQAVDTKMKTME-QQ 233
Query: 354 LKRRDEELMKKHAEEMQLRLAQQEE 378
L++ +E++ K + E+Q + +EE
Sbjct: 234 LEQEIDEILAKESYELQQQQKLREE 258
>gi|1480444|gb|AAC59935.1| gizzard PTB-associated splicing factor, partial [Gallus gallus]
Length = 241
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 106/217 (48%), Positives = 142/217 (65%), Gaps = 13/217 (5%)
Query: 165 AKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDER 224
AKA+LD ++GR L++RFA AA+ V+NL+ V+NELLE AF FG +ERA+VIVD+R
Sbjct: 1 AKAELDDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPVERAVVIVDDR 60
Query: 225 GNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKK 284
G S +GIVEFA KPAA +A RC EG F LT + RPVIVEPLE D+ DGL E+ + +K
Sbjct: 61 GRSTGKGIVEFASKPAARKAFERCTEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQK 119
Query: 285 TPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL--AQREIDRERQKA 342
P + K+R+ PRFA SFEFEY RWK L E+ + + E + K + A+ +++ E + A
Sbjct: 120 NPMYQKERETPPRFAQPGSFEFEYSQRWKSLDEMEKQQREQVAKNMKDAKDKLESEMEDA 179
Query: 343 EWEMKERQA----EELKRRDEELMKK---HAEEMQLR 372
E QA ++L RR EEL + H +EMQ R
Sbjct: 180 ---YHEHQANLLRQDLMRRQEELRRMEELHNQEMQKR 213
>gi|12836308|dbj|BAB23598.1| unnamed protein product [Mus musculus]
Length = 257
Score = 181 bits (459), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 91/187 (48%), Positives = 133/187 (71%), Gaps = 1/187 (0%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 72 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 131
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 132 DNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 191
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC+EG F LT RPV VEP++ D+ +GL E+ + K +F+
Sbjct: 192 KGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFH 250
Query: 290 KQRQVGP 296
K+R+ P
Sbjct: 251 KEREQPP 257
>gi|149023974|gb|EDL80471.1| splicing factor proline/glutamine rich (polypyrimidine tract
binding protein associated) [Rattus norvegicus]
gi|344244977|gb|EGW01081.1| Splicing factor, proline- and glutamine-rich [Cricetulus griseus]
Length = 351
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 101/212 (47%), Positives = 139/212 (65%), Gaps = 13/212 (6%)
Query: 174 LKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIV 233
++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S +GIV
Sbjct: 1 MRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIV 60
Query: 234 EFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQ 293
EFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P + K+R+
Sbjct: 61 EFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQKERE 119
Query: 294 VGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL--AQREIDRERQKAEWEMKERQA 351
PRFA +FE+EY RWK L E+ + + E + K + A+ +++ E + A E QA
Sbjct: 120 TPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDA---YHEHQA 176
Query: 352 ----EELKRRDEELMKK---HAEEMQLRLAQQ 376
++L RR EEL + H++EMQ R Q
Sbjct: 177 NLLRQDLMRRQEELRRMEELHSQEMQKRKEMQ 208
>gi|67971692|dbj|BAE02188.1| unnamed protein product [Macaca fascicularis]
Length = 351
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 101/212 (47%), Positives = 138/212 (65%), Gaps = 13/212 (6%)
Query: 174 LKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIV 233
++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S +GIV
Sbjct: 1 MRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIV 60
Query: 234 EFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQ 293
EFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P + K+R+
Sbjct: 61 EFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQKERE 119
Query: 294 VGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL--AQREIDRERQKAEWEMKERQA 351
PRFA +FE+EY RWK L E+ + + E + K + A+ +++ E + A E QA
Sbjct: 120 TPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDA---YHEHQA 176
Query: 352 ----EELKRRDEELMKK---HAEEMQLRLAQQ 376
++L RR EEL + H +EMQ R Q
Sbjct: 177 NLLRQDLMRRQEELRRMEELHNQEMQKRKEMQ 208
>gi|194032483|gb|ACF33131.1| polypyrimidine-tract-binding protein-associated splicing factor
[Caenorhabditis brenneri]
Length = 248
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 144/222 (64%), Gaps = 10/222 (4%)
Query: 151 FGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGV 210
F F+R+D + +A+ AK +DG ++ GR +++RFA AAI+VK L+ V+NE+L AF
Sbjct: 2 FAFLRLDTRAHAESAKEAIDGRIIHGRQVRVRFAVHGAAIRVKELSPTVSNEMLYHAFSH 61
Query: 211 FGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELT 270
FGD+ERA+ IVDE+G EGIVEF RKP +A+ E F LT S +P+I E LE
Sbjct: 62 FGDVERAVHIVDEKGRPTGEGIVEFERKPNCNEAMAAIREKVFLLTASPKPLICEVLEPR 121
Query: 271 DEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL 330
DE DGL+ER I +TP K+R++GPRF T NSFE+ YG +WK+L+++ + L +EL
Sbjct: 122 DEDDGLAERMI-PRTPGLSKERELGPRFPTQNSFEYVYGMKWKELYDVEKKRRAALDEEL 180
Query: 331 AQREIDRERQKAEWEM--KERQA----EELKRRDEELMKKHA 366
+ R R +++ E+ ++ QA E+L+RR +EL + A
Sbjct: 181 RE---SRRRLESDMELAYQDYQAQMLREDLQRRQQELERLEA 219
>gi|170592319|ref|XP_001900916.1| Splicing factor, proline-and glutamine-rich [Brugia malayi]
gi|158591611|gb|EDP30216.1| Splicing factor, proline-and glutamine-rich, putative [Brugia
malayi]
Length = 309
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 81/175 (46%), Positives = 120/175 (68%), Gaps = 1/175 (0%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168
KF CRL++GN+ D+ E ++ ELF P+G+ E +++ K F F+R+D + +A+ AK
Sbjct: 123 KFTGRCRLFVGNLPNDLKEQELKELFAPHGDIAECYLSG-KGFAFLRLDTRAHAESAKEA 181
Query: 169 LDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSK 228
+DG ++ GR +++RFA AA++VK L+ V+NE+L AF FG++ERA+ IVDE+G
Sbjct: 182 IDGKIIHGRPVRVRFAVHGAALRVKELSPTVSNEMLYHAFSAFGEVERAVHIVDEKGKPT 241
Query: 229 CEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINK 283
EGIVEF RKP+A +AL + E F LT S +P++VE LE DE DGL+ER I +
Sbjct: 242 GEGIVEFERKPSANEALHQIREKVFLLTASPKPLVVEMLEPRDEDDGLAERMIQR 296
>gi|312068181|ref|XP_003137093.1| splicing factor [Loa loa]
Length = 308
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/175 (46%), Positives = 120/175 (68%), Gaps = 1/175 (0%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168
KF CRL++GN+ D+ E ++ ELF P+G+ E +++ K F F+R+D + +A+ AK
Sbjct: 124 KFTGRCRLFVGNLPNDLKEQELKELFAPHGDIAECYLSG-KGFAFLRLDTRAHAESAKEA 182
Query: 169 LDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSK 228
+DG ++ GR +++RFA AA++VK L+ V+NE+L AF FG++ERA+ IVDE+G
Sbjct: 183 IDGKIIHGRPVRVRFAVHGAALRVKELSPTVSNEMLYHAFSAFGEVERAVHIVDEKGKPT 242
Query: 229 CEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINK 283
EGIVEF RKP+A +AL + E F LT S +P++VE LE DE DGL+ER I +
Sbjct: 243 GEGIVEFERKPSANEALHQIREKVFLLTASPKPLVVEMLEPRDEDDGLAERMIQR 297
>gi|426374861|ref|XP_004054276.1| PREDICTED: paraspeckle component 1 [Gorilla gorilla gorilla]
Length = 376
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 78/147 (53%), Positives = 106/147 (72%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 78 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 137
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +E+A+V+VD+RG +
Sbjct: 138 DGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATG 197
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLT 256
+G VEFA KP A +AL RC +G F LT
Sbjct: 198 KGFVEFAAKPPARKALERCGDGAFLLT 224
>gi|325302990|tpg|DAA34530.1| TPA_inf: RNA-binding protein p54nrb [Amblyomma variegatum]
Length = 208
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/155 (49%), Positives = 110/155 (70%), Gaps = 6/155 (3%)
Query: 86 EKIMAIQGPT--LDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQEL 143
E++ ++GPT ++ +EP+ KF CRL++GN+ + TE +LF+ YGE E+
Sbjct: 58 EQLSYLRGPTTGMETRSAEPK----KFTGRCRLFVGNLPSNFTEEQFRKLFENYGEVAEI 113
Query: 144 FINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNEL 203
F+N K FGF+++D + NA+ AKA LD ++ + L++RFA +AA+KVKN + VTNEL
Sbjct: 114 FLNTSKGFGFVKLDTRQNAEAAKAALDFMPMQQKPLRVRFATHSAALKVKNFSQWVTNEL 173
Query: 204 LELAFGVFGDIERAIVIVDERGNSKCEGIVEFARK 238
LELAF VFGD+ERA+VIVD+RG S EGIVEF+RK
Sbjct: 174 LELAFSVFGDVERAVVIVDDRGRSVGEGIVEFSRK 208
>gi|426396354|ref|XP_004064412.1| PREDICTED: non-POU domain-containing octamer-binding protein-like
[Gorilla gorilla gorilla]
Length = 217
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 76/147 (51%), Positives = 108/147 (73%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 70 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 129
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 130 DNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 189
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLT 256
+GIVEF+ KPAA +AL RC+EG F LT
Sbjct: 190 KGIVEFSGKPAARKALDRCSEGSFLLT 216
>gi|431914405|gb|ELK15662.1| Non-POU domain-containing octamer-binding protein [Pteropus alecto]
Length = 299
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/146 (51%), Positives = 107/146 (73%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 100 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 159
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 160 DNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 219
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFL 255
+GIVEF+ KPAA +AL RC+EG F L
Sbjct: 220 KGIVEFSGKPAARKALDRCSEGSFLL 245
>gi|90076290|dbj|BAE87825.1| unnamed protein product [Macaca fascicularis]
Length = 162
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/145 (52%), Positives = 104/145 (71%), Gaps = 1/145 (0%)
Query: 174 LKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIV 233
L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG +GIV
Sbjct: 3 LRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIV 62
Query: 234 EFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQ 293
EF+ KPAA +AL RC+EG F LT RPV VEP++ D+ +GL E+ + K +F+K+R+
Sbjct: 63 EFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFHKERE 121
Query: 294 VGPRFATVNSFEFEYGSRWKQLHEL 318
PRFA SFE+EY RWK L E+
Sbjct: 122 QPPRFAQPGSFEYEYAMRWKALIEM 146
>gi|297282934|ref|XP_002802350.1| PREDICTED: splicing factor, proline- and glutamine-rich-like,
partial [Macaca mulatta]
Length = 575
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 101/280 (36%), Positives = 154/280 (55%), Gaps = 33/280 (11%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 216 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 275
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 276 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 335
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF P R G F S R + DE++ + K +
Sbjct: 336 KGIVEFRETPP-----RFAQHGTFEYEYSQR------WKSLDEMEKQQREQVEKNMKD-- 382
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQR--EIDRERQKAEWEMK 347
+ E E + +EH+ +LR++L +R E+ R + EM+
Sbjct: 383 ----------AKDKLESEMEDAY------HEHQANLLRQDLMRRQEELRRMEELHNQEMQ 426
Query: 348 ERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDN 387
+R+ E++ R EE ++ EEM +R + EE +RR++ ++
Sbjct: 427 KRK--EMQLRQEEERRRREEEMMIRQREMEEQMRRQREES 464
>gi|4063717|gb|AAC98392.1| PTB-associated splicing factor [Mus musculus]
Length = 122
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 71/122 (58%), Positives = 88/122 (72%), Gaps = 1/122 (0%)
Query: 194 NLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCF 253
NL+ V+NELLE AF FG IERA+VIVD+RG S +GIVEFA KPAA +A RC+EG F
Sbjct: 1 NLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFASKPAARKAFERCSEGVF 60
Query: 254 FLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWK 313
LT + RPVIVEPLE D+ DGL E+ + +K P + K+R+ PRFA +FE+EY RWK
Sbjct: 61 LLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQKERETPPRFAQHGTFEYEYSQRWK 119
Query: 314 QL 315
L
Sbjct: 120 SL 121
>gi|47210138|emb|CAF91282.1| unnamed protein product [Tetraodon nigroviridis]
Length = 193
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 85/124 (68%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ + E D+ LF YG+ E+FINKE+ FGFIR++ + A+ A+A+L
Sbjct: 58 FTQRSRLFVGNLPAGVIEEDLERLFAKYGKASEIFINKERGFGFIRLETRIIAEIARAEL 117
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D +GR +++RFA AA+ VKNL V+NELLE AF VFG IERA+V+VD+RG
Sbjct: 118 DDTPFRGRPIRVRFATHGAALTVKNLPEFVSNELLEEAFAVFGQIERAVVVVDDRGRPTG 177
Query: 230 EGIV 233
+GI+
Sbjct: 178 KGIL 181
>gi|12850804|dbj|BAB28857.1| unnamed protein product [Mus musculus]
Length = 203
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 56/116 (48%), Positives = 84/116 (72%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFI ++ + A+ AK +L
Sbjct: 72 FTQRTRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFINLETRTLAEIAKVEL 131
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERG 225
D L+G+ L++RFA +A++KV+NL V+NELL AF VFG +ERA+VI D+RG
Sbjct: 132 DNMPLRGKQLRVRFACHSASLKVRNLPQYVSNELLGEAFSVFGQVERAVVIEDDRG 187
>gi|349803235|gb|AEQ17090.1| putative 54 kd nuclear rna-binding protein [Pipa carvalhoi]
Length = 113
Score = 112 bits (281), Expect = 4e-22, Method: Composition-based stats.
Identities = 57/113 (50%), Positives = 82/113 (72%), Gaps = 1/113 (0%)
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGN 226
A+LD L+G+ L++ FA +AA+ V+N+ V+NELLE AF +FG +ERA+V+VD+RG
Sbjct: 1 AELDNLPLRGKQLRV-FACHSAALSVRNIPQFVSNELLEEAFSIFGQVERAVVVVDDRGR 59
Query: 227 SKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSER 279
+GIVEFA KP+A +AL RCA+G + LT RPV VEP++ D+ +GL E+
Sbjct: 60 PSGKGIVEFASKPSARKALDRCADGSYLLTAFPRPVTVEPMDQLDDEEGLPEK 112
>gi|21740307|emb|CAD39162.1| hypothetical protein [Homo sapiens]
Length = 202
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/139 (44%), Positives = 85/139 (61%), Gaps = 12/139 (8%)
Query: 224 RGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINK 283
RG + +G VEFA KP A +AL RC +G F LT + RPVIVEP+E D+ DGL E+ + +
Sbjct: 1 RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM-Q 59
Query: 284 KTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAE 343
KT +++K+R+ PRFA +FEFEY SRWK L E+ E ++E R I ++K E
Sbjct: 60 KTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEKLE 114
Query: 344 WEMKERQAEELKRRDEELM 362
EM E R + +LM
Sbjct: 115 AEM------EAARHEHQLM 127
>gi|444707475|gb|ELW48749.1| Non-POU domain-containing octamer-binding protein [Tupaia
chinensis]
Length = 192
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 81/112 (72%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLK 175
L++GN+ DITE ++ +LF+ YG+T ++FI+++K FGFI + + A+ AK +LD L+
Sbjct: 75 LFVGNLPPDITEEEMRKLFERYGKTGKVFIHRDKGFGFICLKTRTLAEIAKVELDNMPLR 134
Query: 176 GRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNS 227
G+ L++RFA +A++ V+NL ++N+ LE VFG +ERA+VIVD+RG +
Sbjct: 135 GKQLRVRFACHSASLIVRNLPQYMSNKRLEEDLSVFGQVERAVVIVDDRGRA 186
>gi|402892160|ref|XP_003909288.1| PREDICTED: non-POU domain-containing octamer-binding protein-like
[Papio anubis]
Length = 289
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 67/95 (70%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGF R++ + A+ AK +L
Sbjct: 70 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFNRLETRTLAEIAKVEL 129
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELL 204
D L+G+ L++RFA +A++ V+NL V+NELL
Sbjct: 130 DNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELL 164
>gi|170071632|ref|XP_001869963.1| no-on-transient A [Culex quinquefasciatus]
gi|167867585|gb|EDS30968.1| no-on-transient A [Culex quinquefasciatus]
Length = 170
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 71/146 (48%), Gaps = 33/146 (22%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVL 174
RLYLGN+ E +++ELF PY E E+F+N +K DY NA+K K
Sbjct: 49 RLYLGNLTPYGNEEELVELFPPYDEITEVFMNMKK-------DYAFNAEKVKR------- 94
Query: 175 KGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVE 234
K LKIRFAP A++V NL TNELL F V + IV
Sbjct: 95 KNCILKIRFAPNATALRVSNLGPFDTNELLYRVFDV-------------------DSIVG 135
Query: 235 FARKPAAAQALRRCAEGCFFLTQSLR 260
F +P+A AL+ C+E F L SLR
Sbjct: 136 FKNRPSATAALKYCSEKYFVLNSSLR 161
>gi|302832137|ref|XP_002947633.1| hypothetical protein VOLCADRAFT_116517 [Volvox carteri f.
nagariensis]
gi|300266981|gb|EFJ51166.1| hypothetical protein VOLCADRAFT_116517 [Volvox carteri f.
nagariensis]
Length = 575
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 90/188 (47%), Gaps = 5/188 (2%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQE-LFINKEKMFGF---IRMDYKHNADKAKAKLDG 171
LY+ + D+TE ++ LF +G +E + +NK+ G M +A KAK L
Sbjct: 9 LYVTGLPADVTEPELRGLFGTHGTVKEAVIVNKKGPSGPNAPQSMAAHADAVKAKKALHK 68
Query: 172 HVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGN-SKCE 230
+ G+ + ++++ + V NL VTNE+L+ AF FG + +A+V D N SK
Sbjct: 69 YDWMGKQISVKWSHNQRVLWVTNLHESVTNEVLQSAFAQFGAVSKAVVACDAPNNTSKGW 128
Query: 231 GIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYK 290
G V F K A +AL + F + LRPV+ + + ++G SE + P K
Sbjct: 129 GFVAFENKRFAVKALDAIRQRPFLIGAGLRPVVADWARNEEVVEGFSEENAARFPPPHSK 188
Query: 291 QRQVGPRF 298
+ G R
Sbjct: 189 EDMQGGRL 196
>gi|194771753|ref|XP_001967716.1| GF21549 [Drosophila ananassae]
gi|190614409|gb|EDV29933.1| GF21549 [Drosophila ananassae]
Length = 115
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 50/71 (70%)
Query: 247 RCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEF 306
+ + + + +SLRP +VEP+E+ D+ G E+ +N++ PEF +R +G RFA +NS E
Sbjct: 13 KVKDKVWKVLESLRPCLVEPMEVNDDNAGFKEKALNEEMPEFSNERSIGLRFADINSVEH 72
Query: 307 EYGSRWKQLHE 317
+YGSRWKQLH+
Sbjct: 73 KYGSRWKQLHD 83
>gi|195349300|ref|XP_002041183.1| GM15177 [Drosophila sechellia]
gi|194122788|gb|EDW44831.1| GM15177 [Drosophila sechellia]
Length = 313
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 55/88 (62%), Gaps = 5/88 (5%)
Query: 69 MNESRMGGGG--GGDRYFTEKIMAIQGPTLDLPPSE-PQNKDIKFANNCRLYLGNIGGDI 125
MN S MGG G D + +++ +I GPT +LPP E P D KF RLY+GN+ D
Sbjct: 219 MNYSLMGGAGQRSEDFFIAQRLRSISGPTHELPPVELP--TDNKFVGRNRLYVGNLTSDT 276
Query: 126 TENDIIELFKPYGETQELFINKEKMFGF 153
T++D+ E+FKPYGE E+F N EK F F
Sbjct: 277 TDDDLREMFKPYGEISEIFSNPEKNFTF 304
>gi|74146684|dbj|BAE41338.1| unnamed protein product [Mus musculus]
Length = 379
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 80/165 (48%), Gaps = 34/165 (20%)
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQA--------------------LRRCAEGCFFLTQ 257
+VI+ E G + I + AA QA L+R F T
Sbjct: 23 LVIMHEEGEVDGKAIPDLTAPVAAVQARVSNLVRVGKETVQTTEDQILKRDMPPAFIKTP 82
Query: 258 SLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHE 317
RPVIVEP+E D+ DGL E+ + +KT +++K+R+ PRFA +FEFEY SRWK L E
Sbjct: 83 --RPVIVEPMEQFDDEDGLPEKLM-QKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDE 139
Query: 318 LYEHETEMLRKELAQREIDRERQKAEWEMKERQAEELKRRDEELM 362
+ E ++E R I ++K E EM E R + +LM
Sbjct: 140 M-----EKQQREQVDRNIREAKEKLEAEM------EAARHEHQLM 173
>gi|194771614|ref|XP_001967704.1| GF21525 [Drosophila ananassae]
gi|190618136|gb|EDV33660.1| GF21525 [Drosophila ananassae]
Length = 163
Score = 77.8 bits (190), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/61 (54%), Positives = 46/61 (75%)
Query: 257 QSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLH 316
+SLRP +VEP+E+ D+ G E+ +NK+ PEF +R +G RFA +NS E +YGSRWKQLH
Sbjct: 23 ESLRPNLVEPMEVNDDNAGFKEKALNKEMPEFSNERSIGLRFADINSVELKYGSRWKQLH 82
Query: 317 E 317
+
Sbjct: 83 D 83
>gi|322711066|gb|EFZ02640.1| poly(A) RNA binding protein [Metarhizium anisopliae ARSEF 23]
Length = 743
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 91/200 (45%), Gaps = 15/200 (7%)
Query: 63 DGRGSDMNESRMGGGGGGDRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIG 122
D +D+N + + G G + + + G + D P + N+ LY+G +
Sbjct: 11 DQLATDLNNTSLNNGSGDAKPTVDTTVGTAG-SEDASAPTPSSAAPHPQNSASLYVGELD 69
Query: 123 GDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KAKAKLDGHVLKG 176
+TE + ELF G + + ++ + G+ ++Y AD KA +L+ ++KG
Sbjct: 70 PSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGEKALEELNYTLIKG 129
Query: 177 RSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSK 228
R +I ++ + A++ +KNL + N+ L F FG+I V DE GNSK
Sbjct: 130 RPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSK 189
Query: 229 CEGIVEFARKPAAAQALRRC 248
G V + AA QA++
Sbjct: 190 GYGFVHYETDEAAHQAIKHV 209
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 33/143 (23%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKA 165
AN +Y+ NI + ++++ ELF+ YG+ + K + FGF+ +A KA
Sbjct: 239 ANFTNIYIKNISTEASDDEFRELFEKYGDITSSSLARDQEGKSRGFGFVNFTTHESAAKA 298
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+L G +G+ L + ++ +N + +KNL V
Sbjct: 299 VEELHGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVN--LYIKNLDDDV 356
Query: 200 TNELLELAFGVFGDIERAIVIVD 222
+E L F FG I A V+ D
Sbjct: 357 DDEKLRQMFAEFGPITSAKVMRD 379
>gi|159163842|pdb|2CPJ|A Chain A, Solution Structure Of The N-Terminal Rna Recognition Motif
Of Nono
gi|430800707|pdb|2RS8|A Chain A, Solution Structure Of The N-Terminal Rna Recognition Motif
Of Nono
Length = 99
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 58/81 (71%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 71
Query: 170 DGHVLKGRSLKIRFAPINAAI 190
D L+G+ L++RFA +A++
Sbjct: 72 DNMPLRGKQLRVRFACHSASL 92
>gi|154322853|ref|XP_001560741.1| hypothetical protein BC1G_00769 [Botryotinia fuckeliana B05.10]
gi|347837080|emb|CCD51652.1| similar to polyadenylate-binding protein [Botryotinia fuckeliana]
Length = 790
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 88/200 (44%), Gaps = 15/200 (7%)
Query: 63 DGRGSDMNESRMGGGGGGDRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIG 122
D SD+N + + G G + + D P N A+ LY+G +
Sbjct: 11 DQLASDLNNASLNGDANGAATLNTDVSNVNSEDQDAAGPTPTNAPHPQAS-ASLYVGELD 69
Query: 123 GDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KAKAKLDGHVLKG 176
+TE + ELF G + + ++ + G+ ++Y AD KA +L+ ++KG
Sbjct: 70 TSVTEAMLFELFSQIGSVASIRVCRDAISRRSLGYAYVNYNTTADGEKALEELNYTLIKG 129
Query: 177 RSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSK 228
R +I ++ + A++ +KNL + N+ L F FG+I V DE G SK
Sbjct: 130 RPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDESGASK 189
Query: 229 CEGIVEFARKPAAAQALRRC 248
G V + AAAQA++
Sbjct: 190 GYGFVHYETDEAAAQAIKHV 209
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 57/142 (40%), Gaps = 30/142 (21%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI------NKEKMFGFIRMDYKHNADK 164
AN +Y+ NI + TE + ELF+ +G+ + K + FGF+ +A
Sbjct: 239 ANFTNIYVKNIPVEATEEEFRELFEKFGDVTSASLARDAETGKSRGFGFVNFINHEHAAT 298
Query: 165 AKAKLDGHVLKGRSLKI-----------------RFAPINAAIK-------VKNLTSCVT 200
A +L+G KG+ L + A I A K VKNL +
Sbjct: 299 AVDELNGKDFKGQDLYVGRAQKKHEREEELRRSYEAARIEKASKYQGVNLYVKNLDDDID 358
Query: 201 NELLELAFGVFGDIERAIVIVD 222
+E L F FG I A V+ D
Sbjct: 359 DEKLRELFQSFGSITSAKVMRD 380
>gi|449302325|gb|EMC98334.1| hypothetical protein BAUCODRAFT_86883 [Baudoinia compniacensis UAMH
10762]
Length = 802
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 85/187 (45%), Gaps = 14/187 (7%)
Query: 76 GGGGGDRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFK 135
G G T ++ D+P N+ LY+G + +TE + ELF
Sbjct: 23 GANGAPTLNTNTAASMSSEYNDMPTPTSAAPSTAHPNSASLYVGELDPSVTEAMLFELFS 82
Query: 136 PYGETQELFINKEKM------FGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAA 189
G+ + + ++ + + ++ + ++ ++A +L+ ++KGR +I ++ + A
Sbjct: 83 SVGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERALEELNYTLIKGRPCRIMWSQRDPA 142
Query: 190 IK--------VKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAA 241
++ +KNL + N+ L F FG+I V VDE GNSK G V + AA
Sbjct: 143 LRKTGHGNVFIKNLDGAIDNKALHDTFAAFGNILSCKVAVDELGNSKGYGFVHYETAEAA 202
Query: 242 AQALRRC 248
+QA++
Sbjct: 203 SQAIKSV 209
>gi|302920668|ref|XP_003053121.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
gi|256734061|gb|EEU47408.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
Length = 742
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
N+ LY+G + +TE + ELF G + + ++ + G+ ++Y AD KA
Sbjct: 58 NSASLYVGELDPAVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGEKA 117
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
+L+ ++KGR +I ++ + A++ +KNL + N+ L F FG+I
Sbjct: 118 LEELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSC 177
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AAAQA++
Sbjct: 178 KVAQDENGNSKGYGFVHYETDEAAAQAIKHV 208
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 33/143 (23%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKA 165
AN +Y+ NI + TE+D +LF+ YG+ + K + FGF+ +A KA
Sbjct: 238 ANFTNVYVKNISPEATEDDFRQLFEQYGDVTSSSLARDQEGKSRGFGFVNFTTHESAAKA 297
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+L+G +G+ L + ++ +N + +KNL V
Sbjct: 298 VDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVN--LYIKNLDDDV 355
Query: 200 TNELLELAFGVFGDIERAIVIVD 222
++ L F FG I A V+ D
Sbjct: 356 DDDKLRQMFSEFGPITSAKVMRD 378
>gi|367030019|ref|XP_003664293.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
gi|347011563|gb|AEO59048.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
Length = 787
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 81/170 (47%), Gaps = 21/170 (12%)
Query: 93 GPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-- 150
GPT PQ+ + LY+G + +TE + ELF G + + ++ +
Sbjct: 50 GPTPSSSAPHPQS-------SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTR 102
Query: 151 --FGFIRMDYKHNAD--KAKAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSC 198
G+ ++Y AD KA +L+ ++KGR +I ++ + A++ +KNL +
Sbjct: 103 RSLGYAYVNYNSTADGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTA 162
Query: 199 VTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
+ N+ L F FG+I V DE GNSK G V + AAAQA++
Sbjct: 163 IDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHV 212
Score = 45.1 bits (105), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 33/143 (23%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKA 165
AN +Y+ NI ++TE + ELF YGE + K + FGF+ +A KA
Sbjct: 242 ANYTNVYVKNINLEVTEEEFRELFSKYGEVTSSTLARDQEGKSRGFGFVNFSTHDSAAKA 301
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+L+G +G+ L + ++ +N + +KNL +
Sbjct: 302 VEELNGKEFRGQELYVGRAQKKHEREEELRKSYEAARAEKANKYQGVN--LYIKNLADDI 359
Query: 200 TNELLELAFGVFGDIERAIVIVD 222
++ L F FG I A V+ D
Sbjct: 360 DDDKLRQMFSEFGPITSAKVMRD 382
>gi|170674510|gb|ACB30143.1| poly(A) RNA binding protein [Epichloe festucae]
Length = 739
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 89/200 (44%), Gaps = 17/200 (8%)
Query: 63 DGRGSDMNESRMGGGGGGDRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIG 122
D +D+N + + GG + G + D P + N+ LY+G +
Sbjct: 11 DQLANDLNNTSLNNGGDTKPTVDTNV---SGGSEDASAPTPNSAAPHPQNSASLYVGELD 67
Query: 123 GDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KAKAKLDGHVLKG 176
+TE + ELF G + + ++ + G+ ++Y +D KA +L+ ++KG
Sbjct: 68 PSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTSDGEKALEELNYTIIKG 127
Query: 177 RSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSK 228
R +I ++ + A++ +KNL + N+ L F FG+I V DE GNSK
Sbjct: 128 RPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDEHGNSK 187
Query: 229 CEGIVEFARKPAAAQALRRC 248
G V + AA QA++
Sbjct: 188 GYGFVHYETDEAAQQAIKHV 207
Score = 42.0 bits (97), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 33/143 (23%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKA 165
AN +Y+ N+ + ++++ ELF+ YGE + K + FGF+ +A KA
Sbjct: 237 ANFTNIYVKNVNPEASDDEFRELFERYGEITSSSLARDQDGKSRGFGFVNYTTHESAYKA 296
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+L+G KG+ L + ++ +N + +KNL V
Sbjct: 297 VDELNGKDFKGQDLYVGRAQKKHEREEELRKSYEAARLEKASKYQGVN--LYIKNLDDDV 354
Query: 200 TNELLELAFGVFGDIERAIVIVD 222
+E L F FG I A V+ D
Sbjct: 355 DDEKLRHMFSEFGPITSAKVMRD 377
>gi|12049995|emb|CAC20035.1| NONA protein [Drosophila littoralis]
gi|12050025|emb|CAC20050.1| NONA protein [Drosophila littoralis]
gi|12050037|emb|CAC20056.1| NONA protein [Drosophila littoralis]
gi|12050043|emb|CAC20059.1| NONA protein [Drosophila littoralis]
gi|12050049|emb|CAC20062.1| NONA protein [Drosophila littoralis]
gi|12050085|emb|CAC20080.1| NONA protein [Drosophila littoralis]
Length = 124
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 47/56 (83%)
Query: 340 QKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQ 395
+K EWEM+E+QAEE+++R+EE M++H EMQ R+ +QEED+RRRQ +N++F+ QQ
Sbjct: 1 KKLEWEMREKQAEEMRKREEETMRRHQTEMQSRMVRQEEDMRRRQQENTLFMQAQQ 56
>gi|12049983|emb|CAC20029.1| NONA protein [Drosophila littoralis]
gi|12049989|emb|CAC20032.1| NONA protein [Drosophila littoralis]
gi|12050001|emb|CAC20038.1| NONA protein [Drosophila littoralis]
gi|12050007|emb|CAC20041.1| NONA protein [Drosophila littoralis]
gi|12050013|emb|CAC20044.1| NONA protein [Drosophila littoralis]
gi|12050019|emb|CAC20047.1| NONA protein [Drosophila littoralis]
gi|12050031|emb|CAC20053.1| NONA protein [Drosophila littoralis]
gi|12050061|emb|CAC20068.1| NONA protein [Drosophila littoralis]
gi|12050067|emb|CAC20071.1| NONA protein [Drosophila littoralis]
gi|12050079|emb|CAC20077.1| NONA protein [Drosophila littoralis]
gi|12050091|emb|CAC20083.1| NONA protein [Drosophila littoralis]
gi|16554841|gb|AAG37347.1| no-on transient A [Drosophila littoralis]
gi|16554853|gb|AAG37353.1| no-on transient A [Drosophila kanekoi]
Length = 123
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 47/56 (83%)
Query: 340 QKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQ 395
+K EWEM+E+QAEE+++R+EE M++H EMQ R+ +QEED+RRRQ +N++F+ QQ
Sbjct: 1 KKLEWEMREKQAEEMRKREEETMRRHQTEMQSRMVRQEEDMRRRQQENTLFMQAQQ 56
>gi|12050055|emb|CAC20065.1| NONA protein [Drosophila littoralis]
gi|12050097|emb|CAC20086.1| NONA protein [Drosophila littoralis]
gi|12050103|emb|CAC20089.1| NONA protein [Drosophila littoralis]
gi|12050109|emb|CAC20092.1| NONA protein [Drosophila littoralis]
Length = 120
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 47/56 (83%)
Query: 340 QKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQ 395
+K EWEM+E+QAEE+++R+EE M++H EMQ R+ +QEED+RRRQ +N++F+ QQ
Sbjct: 1 KKLEWEMREKQAEEMRKREEETMRRHQTEMQSRMVRQEEDMRRRQQENTLFMQAQQ 56
>gi|156064711|ref|XP_001598277.1| hypothetical protein SS1G_00363 [Sclerotinia sclerotiorum 1980]
gi|154691225|gb|EDN90963.1| hypothetical protein SS1G_00363 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 784
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 87/200 (43%), Gaps = 15/200 (7%)
Query: 63 DGRGSDMNESRMGGGGGGDRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIG 122
D SD+N + + G G + + D P N A+ LY+G +
Sbjct: 11 DQLASDLNNASLNGDANGATTLNTDVSNVNSEDQDAAGPTPTNAPHPQAS-ASLYVGELD 69
Query: 123 GDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KAKAKLDGHVLKG 176
+TE + ELF G + + ++ + G+ ++Y D KA +L+ ++KG
Sbjct: 70 PSVTEAMLFELFSQIGSVASIRVCRDAITRRSLGYAYVNYNTTVDGEKALEELNYTLIKG 129
Query: 177 RSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSK 228
R +I ++ + A++ +KNL + N+ L F FG+I V DE G SK
Sbjct: 130 RPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDESGASK 189
Query: 229 CEGIVEFARKPAAAQALRRC 248
G V + AAAQA++
Sbjct: 190 GYGFVHYETDEAAAQAIKHV 209
>gi|358386241|gb|EHK23837.1| hypothetical protein TRIVIDRAFT_169516 [Trichoderma virens Gv29-8]
Length = 747
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 91/208 (43%), Gaps = 27/208 (12%)
Query: 60 NRPDGRGSDMNESRMGGGG-----GGDRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNC 114
N D SD+N + + G G D + PT P PQN +
Sbjct: 8 NAVDQLASDLNNTSLNGSGDVKAPAVDTAVSAGAEDASAPTPTTAP-HPQN-------SA 59
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KAKAK 168
LY+G + +TE + ELF G + + ++ + G+ ++Y D KA +
Sbjct: 60 SLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKALEE 119
Query: 169 LDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVI 220
L+ ++KGR +I ++ + A++ +KNL + N+ L F FG+I V
Sbjct: 120 LNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVA 179
Query: 221 VDERGNSKCEGIVEFARKPAAAQALRRC 248
DE GNSK G V + AAAQA++
Sbjct: 180 QDENGNSKGYGFVHYETDEAAAQAIKHV 207
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 33/143 (23%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKA 165
AN +Y+ NIG D+T+++ ELF+ +G+ + K + FGF+ A KA
Sbjct: 237 ANFTNVYVKNIGPDVTDDEFRELFEKFGDVTSSSLARDQEGKPRGFGFVNFTTHEAAFKA 296
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
L+G +G+ L + ++ +N + +KNL V
Sbjct: 297 VEDLNGKDFRGQELYVGRAQKKHEREEELRKSYEAARLEKANKYQGVN--LYIKNLDDDV 354
Query: 200 TNELLELAFGVFGDIERAIVIVD 222
+E L F FG I A V+ D
Sbjct: 355 DDEKLRQMFAEFGPITSAKVMRD 377
>gi|12054497|emb|CAC20122.1| NONA protein [Drosophila virilis]
gi|16554809|gb|AAG37331.1| no-on transient A [Drosophila virilis]
gi|16554813|gb|AAG37333.1| no-on transient A [Drosophila virilis]
gi|16554815|gb|AAG37334.1| no-on transient A [Drosophila virilis]
gi|16554817|gb|AAG37335.1| no-on transient A [Drosophila virilis]
gi|16554819|gb|AAG37336.1| no-on transient A [Drosophila virilis]
gi|16554821|gb|AAG37337.1| no-on transient A [Drosophila virilis]
gi|16554823|gb|AAG37338.1| no-on transient A [Drosophila virilis]
gi|16554827|gb|AAG37340.1| no-on transient A [Drosophila virilis]
gi|16554829|gb|AAG37341.1| no-on transient A [Drosophila virilis]
Length = 118
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 47/56 (83%)
Query: 340 QKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQ 395
+K EWEM+E+QAEE+++R+EE M++H EMQ R+ +QEED+RRRQ +N++F+ QQ
Sbjct: 1 KKLEWEMREKQAEEMRKREEETMRRHQTEMQSRMVRQEEDMRRRQQENTLFMQAQQ 56
>gi|16554849|gb|AAG37351.1| no-on transient A [Drosophila lacicola]
Length = 123
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 47/56 (83%)
Query: 340 QKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQ 395
+K EWEM+E+QAEE+++R+EE M++H EMQ R+ +QEED+RRRQ +N++F+ QQ
Sbjct: 1 KKLEWEMREKQAEEMRKREEETMRRHQTEMQSRMVRQEEDMRRRQQENTLFMQAQQ 56
>gi|16554811|gb|AAG37332.1| no-on transient A [Drosophila virilis]
gi|16554825|gb|AAG37339.1| no-on transient A [Drosophila virilis]
Length = 117
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 47/56 (83%)
Query: 340 QKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQ 395
+K EWEM+E+QAEE+++R+EE M++H EMQ R+ +QEED+RRRQ +N++F+ QQ
Sbjct: 1 KKLEWEMREKQAEEMRKREEETMRRHQTEMQSRMVRQEEDMRRRQQENTLFMQAQQ 56
>gi|16554845|gb|AAG37349.1| no-on transient A [Drosophila borealis]
gi|16554847|gb|AAG37350.1| no-on transient A [Drosophila flavomontana]
gi|16554851|gb|AAG37352.1| no-on transient A [Drosophila montana]
gi|327322736|gb|AEA48791.1| NonA [Drosophila borealis]
Length = 121
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 47/56 (83%)
Query: 340 QKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQ 395
+K EWEM+E+QAEE+++R+EE M++H EMQ R+ +QEED+RRRQ +N++F+ QQ
Sbjct: 1 KKLEWEMREKQAEEMRKREEETMRRHQTEMQSRMVRQEEDMRRRQQENTLFMQAQQ 56
>gi|340517112|gb|EGR47358.1| polyadenylate-binding protein [Trichoderma reesei QM6a]
Length = 745
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 90/205 (43%), Gaps = 27/205 (13%)
Query: 63 DGRGSDMNESRMGGGG-----GGDRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLY 117
D SD+N + + G G D + PT P PQN + LY
Sbjct: 11 DQLASDLNNTSLNGSGDVKAPAIDTSVSAGAEDASAPTPTAAP-HPQN-------SASLY 62
Query: 118 LGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KAKAKLDG 171
+G + +TE + ELF G + + ++ + G+ ++Y D KA +L+
Sbjct: 63 VGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKALEELNY 122
Query: 172 HVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIVDE 223
++KGR +I ++ + A++ +KNL + N+ L F FG+I V DE
Sbjct: 123 TLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE 182
Query: 224 RGNSKCEGIVEFARKPAAAQALRRC 248
GNSK G V + AAAQA++
Sbjct: 183 NGNSKGYGFVHYETDEAAAQAIKHV 207
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 33/143 (23%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKA 165
AN +Y+ NI D+T+ D +LF+ +G+ + K + FGF+ A KA
Sbjct: 237 ANFTNVYVKNIAPDVTDEDFRQLFEKFGDVTSSSLARDQEGKTRGFGFVNFTTHEAAFKA 296
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+L+G +G+ L + ++ +N + +KNL V
Sbjct: 297 VEELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVN--LYIKNLDDDV 354
Query: 200 TNELLELAFGVFGDIERAIVIVD 222
+E L F FG I A V+ D
Sbjct: 355 DDEKLRQMFAEFGPITSAKVMRD 377
>gi|452984370|gb|EME84127.1| hypothetical protein MYCFIDRAFT_202901 [Pseudocercospora fijiensis
CIRAD86]
Length = 715
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 77/151 (50%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
N+ LY+G + +TE + ELF G+ + + ++ + G+ ++Y AD +A
Sbjct: 53 NSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSAADGERA 112
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
+L+ ++KG+ +I ++ + A++ +KNL + + N+ L F FG+I
Sbjct: 113 LEELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSC 172
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V VDE GNSK G V + AA QA++
Sbjct: 173 KVAVDEHGNSKGYGFVHYETSDAANQAIKSV 203
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 62/152 (40%), Gaps = 33/152 (21%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKA 165
AN +Y+ NI + T+++ ELF+ YG+ + K + FGF+ +A KA
Sbjct: 233 ANFTNIYVKNIDAETTDDEFRELFEKYGQITSASLAHDDQGKVRGFGFVNFIRHEDAAKA 292
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+L+ KG+ L + ++ +N + VKNL +
Sbjct: 293 VDELNDLDFKGQKLYVGRAQKKHEREEELRKQYEAQRQEKSAKYQGVN--LYVKNLADEI 350
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEG 231
+E L F +G I A V+ D K EG
Sbjct: 351 DDEELRKIFEPYGAITSAKVMRDTTPLDKVEG 382
>gi|16554833|gb|AAG37343.1| no-on transient A [Drosophila novamexicana]
Length = 118
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 47/56 (83%)
Query: 340 QKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQ 395
+K EWEM+E+QAEE+++R+EE M++H EMQ R+ +QEED+RRRQ +N++F+ QQ
Sbjct: 1 KKLEWEMREKQAEEMRKREEETMRRHQTEMQSRMVRQEEDMRRRQQENTLFMQAQQ 56
>gi|322698722|gb|EFY90490.1| poly(A) RNA binding protein [Metarhizium acridum CQMa 102]
Length = 742
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 26/205 (12%)
Query: 63 DGRGSDMNESRMGGGGGGDRYFTEKIMAI-----QGPTLDLPPSEPQNKDIKFANNCRLY 117
D +D+ + + G G I A PT PQN + LY
Sbjct: 11 DQLATDLTNTSLNGSGDAKPTVDTTIGAAGSEDASAPTPSSAAPHPQN-------SASLY 63
Query: 118 LGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KAKAKLDG 171
+G + +TE + ELF G + + ++ + G+ ++Y AD KA +L+
Sbjct: 64 VGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGEKALEELNY 123
Query: 172 HVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIVDE 223
++KGR +I ++ + A++ +KNL + N+ L F FG+I V DE
Sbjct: 124 TLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE 183
Query: 224 RGNSKCEGIVEFARKPAAAQALRRC 248
GNSK G V + AA QA++
Sbjct: 184 NGNSKGYGFVHYETDEAAHQAIKHV 208
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 33/143 (23%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKA 165
AN +Y+ NI + ++++ ELF+ YG+ + K + FGF+ +A KA
Sbjct: 238 ANFTNIYVKNISTEASDDEFRELFEKYGDITSSSLARDQEGKSRGFGFVNFTTHESAAKA 297
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+L G +G+ L + ++ +N + +KNL V
Sbjct: 298 VEELHGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVN--LYIKNLDDDV 355
Query: 200 TNELLELAFGVFGDIERAIVIVD 222
+E L F FG I A V+ D
Sbjct: 356 DDEKLRQMFAEFGPITSAKVMRD 378
>gi|342879464|gb|EGU80711.1| hypothetical protein FOXB_08751 [Fusarium oxysporum Fo5176]
Length = 794
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
N+ LY+G + +TE + ELF G + + ++ + G+ ++Y AD KA
Sbjct: 57 NSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATADGEKA 116
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
+L+ ++KGR +I ++ + A++ +KNL + N+ L F FG+I
Sbjct: 117 LEELNYTLIKGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNILSC 176
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA+QA++
Sbjct: 177 KVAQDENGNSKGYGFVHYETDEAASQAIKHV 207
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKA 165
AN +Y+ NI D+TE+D ELF+ +G+ + K + FGF+ +A KA
Sbjct: 237 ANFTNVYVKNIAPDVTEDDFRELFEKFGDVTSSSLARDQEGKSRGFGFVNFTTHESASKA 296
Query: 166 KAKLDGHVLKGRSLKI 181
L+G G+ L +
Sbjct: 297 VDDLNGKDFHGQDLYV 312
>gi|389629168|ref|XP_003712237.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|158514092|sp|A4QUF0.1|PABP_MAGO7 RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|351644569|gb|EHA52430.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|440469069|gb|ELQ38192.1| polyadenylate-binding protein [Magnaporthe oryzae Y34]
gi|440487573|gb|ELQ67355.1| polyadenylate-binding protein [Magnaporthe oryzae P131]
Length = 762
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 91/206 (44%), Gaps = 27/206 (13%)
Query: 63 DGRGSDMNESRMGGGGGGD------RYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRL 116
D SD+ + M GG FT + + GPT PQ + L
Sbjct: 11 DQLTSDLANANMNGGEKTTVNTNVGASFTGEEIDTAGPTPSSAAPHPQA-------SASL 63
Query: 117 YLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KAKAKLD 170
Y+G + +TE + ELF G + + ++ + G+ ++Y AD KA +L+
Sbjct: 64 YVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELN 123
Query: 171 GHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIVD 222
++KGR +I ++ + A++ +KNL + N+ L F FG+I V D
Sbjct: 124 YTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD 183
Query: 223 ERGNSKCEGIVEFARKPAAAQALRRC 248
E GNSK G V + AA+QA++
Sbjct: 184 ENGNSKGYGFVHYETDEAASQAIKHV 209
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 34/144 (23%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI------NKEKMFGFIRMDYKHNADK 164
AN +Y+ NI ++T+++ LF+ YG+ + K + FGF+ +A K
Sbjct: 239 ANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASK 298
Query: 165 AKAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSC 198
A +L+ G++L + ++ +N + +KNL
Sbjct: 299 AVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVN--LYIKNLDDE 356
Query: 199 VTNELLELAFGVFGDIERAIVIVD 222
V +E L F FG I A V+ D
Sbjct: 357 VDDEKLRQLFSEFGPITSAKVMRD 380
>gi|16554839|gb|AAG37346.1| no-on transient A [Drosophila americana americana]
Length = 119
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 45/55 (81%)
Query: 341 KAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQ 395
K EWEM+E QAEE+++R+EE M++H EMQ R+ +QEED+RRRQ +N++F+ QQ
Sbjct: 2 KLEWEMRENQAEEMRKREEETMRRHQTEMQSRMVRQEEDMRRRQQENTLFMQAQQ 56
>gi|12050073|emb|CAC20074.1| NONA protein [Drosophila littoralis]
Length = 122
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 51/66 (77%), Gaps = 8/66 (12%)
Query: 340 QKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMF--------L 391
+K EWEM+E+QAEE+++R+EE M++H EMQ R+ +QEED+RRRQ +N++F L
Sbjct: 1 KKLEWEMREKQAEEMRKREEETMRRHQTEMQSRMVRQEEDMRRRQQENTLFMQAQQLNSL 60
Query: 392 VEQQQG 397
++QQ+G
Sbjct: 61 LDQQEG 66
>gi|346323639|gb|EGX93237.1| polyadenylate-binding protein [Cordyceps militaris CM01]
Length = 736
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 89/200 (44%), Gaps = 21/200 (10%)
Query: 63 DGRGSDMNESRMGGGGGGDRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIG 122
D +D+N + + G D + GPT + PQN + LY+G +
Sbjct: 11 DQLTADLNNTSIDGKPSVDTSVSAATGDDAGPTPNSAAPHPQN-------SASLYVGELD 63
Query: 123 GDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KAKAKLDGHVLKG 176
+TE + ELF G + + ++ + G+ ++Y D KA +L+ ++KG
Sbjct: 64 PSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKALEELNYTLIKG 123
Query: 177 RSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSK 228
R +I ++ + A++ +KNL + N+ L F FG+I V DE G+SK
Sbjct: 124 RPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDETGSSK 183
Query: 229 CEGIVEFARKPAAAQALRRC 248
G V + AA QA++
Sbjct: 184 GYGFVHYETDEAAQQAIKHV 203
Score = 38.1 bits (87), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 57/149 (38%), Gaps = 29/149 (19%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKA 165
AN +Y+ NI D+T++ LF+ +G+ I K + FGF+ A A
Sbjct: 233 ANFTNVYIKNIAPDVTDDQFRVLFEAHGDVTSSSIARDPDGKSRGFGFVNFTTHEAASAA 292
Query: 166 KAKLDGHVLKGRSLKI-----------------RFAPINAAIK-------VKNLTSCVTN 201
+L+ G+ L + A I A K +KNL V +
Sbjct: 293 VEELNNKDFHGQELYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYIKNLDDDVDD 352
Query: 202 ELLELAFGVFGDIERAIVIVDERGNSKCE 230
E L F FG I A V+ D + + E
Sbjct: 353 EKLRTMFTEFGPITSAKVMRDSPSDDEDE 381
>gi|116202083|ref|XP_001226853.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
gi|121932498|sp|Q2GSX8.1|PABP_CHAGB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|88177444|gb|EAQ84912.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
Length = 783
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 80/170 (47%), Gaps = 21/170 (12%)
Query: 93 GPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-- 150
GPT PQ+ + LY+G + +TE + ELF G + + ++ +
Sbjct: 51 GPTPSSAAPHPQS-------SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITR 103
Query: 151 --FGFIRMDYKHNAD--KAKAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSC 198
G+ ++Y +D KA +L+ ++KGR +I ++ + A++ +KNL
Sbjct: 104 RSLGYAYVNYNSTSDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVA 163
Query: 199 VTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
+ N+ L F FG+I V DE GNSK G V + AAAQA++
Sbjct: 164 IDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHV 213
>gi|85097328|ref|XP_960425.1| polyadenylate-binding protein [Neurospora crassa OR74A]
gi|74696454|sp|Q7S6N6.1|PABP_NEUCR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|28921916|gb|EAA31189.1| polyadenylate-binding protein [Neurospora crassa OR74A]
Length = 764
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 75/150 (50%), Gaps = 14/150 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KAK 166
+ LY+G + +TE + ELF G + + ++ + G+ ++Y AD KA
Sbjct: 59 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 118
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
+L+ ++KGR +I ++ + A++ +KNL + + N+ L F FG+I
Sbjct: 119 EELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCK 178
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA+QA++
Sbjct: 179 VAQDEHGNSKGYGFVHYETDEAASQAIKHV 208
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 66/149 (44%), Gaps = 19/149 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + + F +G + ++ K +GF+ + A +A ++
Sbjct: 150 IFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVN 209
Query: 171 GHVLKGRSLKI-----------RFAPINAA---IKVKNLTSCVTNELLELAFGVFGDIER 216
G +L + + + +F + A + VKN+ + VT+E F FG++
Sbjct: 210 GMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTS 269
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ + D+ G S+ G V F AAAQA+
Sbjct: 270 SSLARDQEGKSRGFGFVNFTTHEAAAQAV 298
Score = 38.9 bits (89), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 33/143 (23%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKA 165
AN +Y+ NI ++T+ + ELF +GE + K + FGF+ A +A
Sbjct: 238 ANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQA 297
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+L+G +G+ L + ++ +N + +KNL V
Sbjct: 298 VDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVN--LYIKNLGDDV 355
Query: 200 TNELLELAFGVFGDIERAIVIVD 222
++ L F +G I A V+ D
Sbjct: 356 DDDKLRAMFSEYGPITSAKVMRD 378
>gi|456753174|gb|JAA74114.1| ribonucleoprotein, PTB-binding 1 [Sus scrofa]
Length = 739
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 81/161 (50%), Gaps = 9/161 (5%)
Query: 92 QGPTLDLPPSEPQ-------NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELF 144
+ P +LPP +P+ + + +F N ++ + + GD+T ++ +L Y E + F
Sbjct: 30 RAPEEELPPLDPEEIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDY-ELKYCF 88
Query: 145 INKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELL 204
++K K F+ + A+ A + L+ R L ++ P +A + V NL +T +
Sbjct: 89 VDKYKGTAFVTLLNGEQAEAAISAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQF 148
Query: 205 ELAFGVFGDIERAIVIVDER-GNSKCEGIVEFARKPAAAQA 244
E FG +ER ++ ER G+SK G E+ +K +AA+A
Sbjct: 149 EELVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARA 189
>gi|336465951|gb|EGO54116.1| hypothetical protein NEUTE1DRAFT_87204 [Neurospora tetrasperma FGSC
2508]
gi|350287213|gb|EGZ68460.1| polyadenylate binding protein [Neurospora tetrasperma FGSC 2509]
Length = 764
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 75/150 (50%), Gaps = 14/150 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KAK 166
+ LY+G + +TE + ELF G + + ++ + G+ ++Y AD KA
Sbjct: 59 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 118
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
+L+ ++KGR +I ++ + A++ +KNL + + N+ L F FG+I
Sbjct: 119 EELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCK 178
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA+QA++
Sbjct: 179 VAQDEHGNSKGYGFVHYETDEAASQAIKHV 208
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 66/149 (44%), Gaps = 19/149 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + + F +G + ++ K +GF+ + A +A ++
Sbjct: 150 IFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVN 209
Query: 171 GHVLKGRSLKI-----------RFAPINAA---IKVKNLTSCVTNELLELAFGVFGDIER 216
G +L + + + +F + A + VKN+ + VT+E F FG++
Sbjct: 210 GMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTS 269
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ + D+ G ++ G V F AAAQA+
Sbjct: 270 SSLARDQEGKTRGFGFVNFTTHEAAAQAV 298
Score = 38.5 bits (88), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 33/143 (23%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKA 165
AN +Y+ NI ++T+ + ELF +GE + K + FGF+ A +A
Sbjct: 238 ANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKTRGFGFVNFTTHEAAAQA 297
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+L+G +G+ L + ++ +N + +KNL V
Sbjct: 298 VDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVN--LYIKNLGDDV 355
Query: 200 TNELLELAFGVFGDIERAIVIVD 222
++ L F +G I A V+ D
Sbjct: 356 DDDKLRAMFSEYGPITSAKVMRD 378
>gi|336276750|ref|XP_003353128.1| hypothetical protein SMAC_03445 [Sordaria macrospora k-hell]
gi|380092612|emb|CCC09889.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 754
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 75/150 (50%), Gaps = 14/150 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KAK 166
+ LY+G + +TE + ELF G + + ++ + G+ ++Y AD KA
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 119
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
+L+ ++KGR +I ++ + A++ +KNL + + N+ L F FG+I
Sbjct: 120 EELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCK 179
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA+QA++
Sbjct: 180 VAQDEHGNSKGYGFVHYETDEAASQAIKHV 209
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 33/143 (23%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKA 165
AN +Y+ NI ++T+++ ELF+ +GE + K + FGF+ A KA
Sbjct: 239 ANFTNVYVKNINHEVTDDEFRELFEKFGEVTSSSLARDQEGKTRGFGFVNFTTHEAAAKA 298
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
L+G +G+ L + ++ +N + +KNL V
Sbjct: 299 VDDLNGKDFRGQDLYVGRAQKKHEREEELRRSYEAARLEKANKYQGVN--LYIKNLGDDV 356
Query: 200 TNELLELAFGVFGDIERAIVIVD 222
+E L F +G I A V+ D
Sbjct: 357 DDEKLRAMFSEYGPITSAKVMRD 379
>gi|440899929|gb|ELR51170.1| Ribonucleoprotein PTB-binding 1 [Bos grunniens mutus]
Length = 758
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 80/159 (50%), Gaps = 9/159 (5%)
Query: 94 PTLDLPPSEPQ-------NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN 146
P +LPP +P+ + + +F N ++ + + GD+T ++ +L Y E + F++
Sbjct: 49 PEEELPPLDPEEIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDY-ELKYCFVD 107
Query: 147 KEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLEL 206
K K F+ + A+ A + L+ R L ++ P +A + V NL +T + E
Sbjct: 108 KYKGTAFVTLLNGEQAEAAISAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEE 167
Query: 207 AFGVFGDIERAIVIVDER-GNSKCEGIVEFARKPAAAQA 244
FG +ER ++ ER G+SK G E+ +K +AA+A
Sbjct: 168 LVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARA 206
>gi|338727426|ref|XP_001492770.3| PREDICTED: LOW QUALITY PROTEIN: ribonucleoprotein PTB-binding 1
isoform 1 [Equus caballus]
Length = 758
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 80/161 (49%), Gaps = 9/161 (5%)
Query: 92 QGPTLDLPPSEPQ-------NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELF 144
+ P +LPP +P+ + + +F N ++ + + GD+T ++ +L Y E + F
Sbjct: 47 RAPEEELPPLDPEEIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDY-ELKYCF 105
Query: 145 INKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELL 204
++K K F+ + A+ A + L R L +R P +A + V NL +T +
Sbjct: 106 VDKYKGTAFVTLLNGEQAEAAISAFHQSRLXERELSVRLQPTDALLCVANLPPSLTQQQF 165
Query: 205 ELAFGVFGDIERAIVIVDER-GNSKCEGIVEFARKPAAAQA 244
E FG +ER ++ ER G+SK G E+ +K +AA+A
Sbjct: 166 EELVRPFGSLERCFLVYSERSGHSKGYGFAEYMKKDSAARA 206
>gi|367040559|ref|XP_003650660.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
gi|346997921|gb|AEO64324.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
Length = 777
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 21/170 (12%)
Query: 93 GPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-- 150
GPT PQ+ + LY+G + +TE + ELF G + + ++ +
Sbjct: 50 GPTPSSTAPHPQS-------SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTR 102
Query: 151 ----FGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSC 198
+ ++ + + +KA +L+ ++KGR +I ++ + A++ +KNL
Sbjct: 103 RSLGYAYVNYNSTQDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVA 162
Query: 199 VTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
+ N+ L F FG+I V DE GNSK G V + AAAQA++
Sbjct: 163 IDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHV 212
Score = 45.4 bits (106), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 33/143 (23%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKA 165
AN +Y+ NI ++TE + ELF YGE + K + FGF+ +A KA
Sbjct: 242 ANFTNVYVKNINHEVTEEEFRELFAKYGEVTSSSLARDNEGKSRGFGFVNFTTHASAAKA 301
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+L+G +G+ L + ++ +N + +KNL V
Sbjct: 302 VEELNGKEFRGQELYVGRAQKKHEREEELRKSYEAARLEKANKYQGVN--LYIKNLADDV 359
Query: 200 TNELLELAFGVFGDIERAIVIVD 222
++ L F FG I A V+ D
Sbjct: 360 DDDKLRQMFSEFGPITSAKVMRD 382
>gi|320591142|gb|EFX03581.1| polyadenylate-binding protein [Grosmannia clavigera kw1407]
Length = 780
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 90/205 (43%), Gaps = 26/205 (12%)
Query: 63 DGRGSDMNESRMGGGGGGDRYFTEKIMA-----IQGPTLDLPPSEPQNKDIKFANNCRLY 117
D +D++ + + GG + A GPT + PQ + LY
Sbjct: 10 DQLAADLSNATLNGGERAAPAINTNVTAEADNDTAGPTPSSAAAHPQA-------SASLY 62
Query: 118 LGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KAKAKLDG 171
+G + +TE + ELF G + + ++ + G+ ++Y AD KA +L+
Sbjct: 63 VGELDESVTEAMLFELFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSTADGEKALEELNY 122
Query: 172 HVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIVDE 223
++K R +I ++ + A++ +KNL + + N+ L F FG+I V DE
Sbjct: 123 TLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDE 182
Query: 224 RGNSKCEGIVEFARKPAAAQALRRC 248
GNSK G V + AA QA++
Sbjct: 183 HGNSKGYGFVHYETDEAAQQAIKHV 207
Score = 42.0 bits (97), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 34/142 (23%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN------KEKMFGFIRMDYKHNADK 164
AN +Y+ N+ D+T+++ +LF+ YG I K + FGFI +A K
Sbjct: 237 ANYTNIYIKNLHADVTDDEFRKLFEQYGAVTSSTIARDQETGKSRGFGFINFTTHESAAK 296
Query: 165 AKAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSC 198
A +L+ + G+ L + ++ +N + +KNL
Sbjct: 297 AVEELNSREIHGQELYVGRAQKKHEREEELRKSYEAARQEKASKYVGVN--LYIKNLDDE 354
Query: 199 VTNELLELAFGVFGDIERAIVI 220
V +E L F +G I A V+
Sbjct: 355 VDDEKLRELFAPYGPITSAKVM 376
>gi|340939192|gb|EGS19814.1| hypothetical protein CTHT_0042990 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 777
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 75/150 (50%), Gaps = 14/150 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KAK 166
+ LY+G + +TE + ELF G + + ++ + G+ ++Y AD KA
Sbjct: 67 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSVADGEKAL 126
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
+L+ ++KG+ +I ++ + A++ +KNL + + N+ L F FG+I
Sbjct: 127 EELNYTLIKGKPCRIMWSQRDPALRKTGHGNIFIKNLDAAIDNKALHDTFAAFGNILSCK 186
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AAAQA++
Sbjct: 187 VATDENGNSKGYGFVHYETDEAAAQAIKHV 216
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 58/143 (40%), Gaps = 33/143 (23%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKA 165
AN +Y+ NI ++TE + E F +GE + K + FGF+ +A K
Sbjct: 246 ANYTNVYIKNINLEVTEEEFREFFSKWGEITSSTLARDAEGKPRGFGFVNYSTHASAAKC 305
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+++G +G+ L + ++ +N + +KNL+ V
Sbjct: 306 VEEMNGKEWRGQELYVGRAQKKHEREEELRKSYEAARLEKQNKYQGVN--LYIKNLSDEV 363
Query: 200 TNELLELAFGVFGDIERAIVIVD 222
+E L F FG I A V+ D
Sbjct: 364 DDEKLRAMFAEFGPITSAKVMRD 386
>gi|402085655|gb|EJT80553.1| polyadenylate-binding protein [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 773
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 89/200 (44%), Gaps = 15/200 (7%)
Query: 63 DGRGSDMNESRMGGGGGGDRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIG 122
D +D + + GG G T + G D + P + + LY+G +
Sbjct: 11 DQLAADFANTGLNGGDKGPAVNT-SVAGFPGDEADTAGATPSSAAPHPQASASLYVGELD 69
Query: 123 GDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KLDGHVLKG 176
+TE + ELF G + + ++ + G+ ++Y +D KA +L+ ++KG
Sbjct: 70 PSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKALDELNYTLIKG 129
Query: 177 RSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSK 228
R +I ++ + A++ +KNL + N+ L F FG+I V DE GNSK
Sbjct: 130 RPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDEHGNSK 189
Query: 229 CEGIVEFARKPAAAQALRRC 248
G V + AA+QA++
Sbjct: 190 GYGFVHYETDEAASQAIKHV 209
>gi|380796399|gb|AFE70075.1| ribonucleoprotein PTB-binding 1, partial [Macaca mulatta]
Length = 746
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 79/159 (49%), Gaps = 9/159 (5%)
Query: 94 PTLDLPPSEPQ-------NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN 146
P +LPP +P+ + + +F N ++ + + GD+T ++ +L Y E + F++
Sbjct: 39 PEEELPPLDPEEIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDY-ELKYCFVD 97
Query: 147 KEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLEL 206
K K F+ + A+ A L+ R L ++ P +A + V NL +T + E
Sbjct: 98 KYKGTAFVTLLNGEQAEAAINAFHQSCLRERELSVQLQPTDALLCVANLPPSLTQQQFEE 157
Query: 207 AFGVFGDIERAIVIVDER-GNSKCEGIVEFARKPAAAQA 244
FG +ER ++ ER G+SK G E+ +K +AA+A
Sbjct: 158 LVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARA 196
>gi|402904168|ref|XP_003914919.1| PREDICTED: ribonucleoprotein PTB-binding 1 [Papio anubis]
Length = 756
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 9/161 (5%)
Query: 92 QGPTLDLPPSEPQ-------NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELF 144
+ P +LPP +P+ + + +F N ++ + + GD+T ++ +L Y E + F
Sbjct: 47 RAPEEELPPLDPEEIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDY-ELKYCF 105
Query: 145 INKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELL 204
++K K F+ + A+ A L+ R L ++ P +A + V NL +T +
Sbjct: 106 VDKYKGTAFVTLLNGEQAEAAINAFHQSCLRERELSVQLQPTDALLCVANLPPSLTQQQF 165
Query: 205 ELAFGVFGDIERAIVIVDER-GNSKCEGIVEFARKPAAAQA 244
E FG +ER ++ ER G+SK G E+ +K +AA+A
Sbjct: 166 EELVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARA 206
>gi|156718146|ref|NP_001096578.1| ribonucleoprotein PTB-binding 1 [Bos taurus]
gi|133777512|gb|AAI23486.1| RAVER1 protein [Bos taurus]
gi|296485881|tpg|DAA27996.1| TPA: RAVER1 [Bos taurus]
Length = 716
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 80/159 (50%), Gaps = 9/159 (5%)
Query: 94 PTLDLPPSEPQ-------NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN 146
P +LPP +P+ + + +F N ++ + + GD+T ++ +L Y E + F++
Sbjct: 32 PEEELPPLDPEEIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDY-ELKYCFVD 90
Query: 147 KEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLEL 206
K K F+ + A+ A + L+ R L ++ P +A + V NL +T + E
Sbjct: 91 KYKGTAFVTLLNGEQAEAAISAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEE 150
Query: 207 AFGVFGDIERAIVIVDER-GNSKCEGIVEFARKPAAAQA 244
FG +ER ++ ER G+SK G E+ +K +AA+A
Sbjct: 151 LVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARA 189
>gi|334326365|ref|XP_003340743.1| PREDICTED: LOW QUALITY PROTEIN: ribonucleoprotein PTB-binding
1-like [Monodelphis domestica]
Length = 801
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 80/160 (50%), Gaps = 11/160 (6%)
Query: 95 TLD--LPPSEPQN-------KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI 145
TLD LPP +P+ + +F N ++ + + GD+T ++ +L Y E + F+
Sbjct: 86 TLDEKLPPLDPEEVRSRLERTERQFRNRRKILIRGLPGDVTNQEVHDLLSDY-ELKYCFV 144
Query: 146 NKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLE 205
+K K F+ + A+ A L+ + L ++ P +A + + NL T + E
Sbjct: 145 DKYKGTAFVTLLNGEQAESAIRTFHQSHLRDKELSVQLQPTDALLCIANLPPSYTQQQFE 204
Query: 206 LAFGVFGDIERAIVIVDER-GNSKCEGIVEFARKPAAAQA 244
FG++ER ++ ER G+SK G VE+ +K +AA+A
Sbjct: 205 ELVRPFGNLERCFLVYSERSGHSKGYGFVEYMKKDSAARA 244
>gi|16554835|gb|AAG37344.1| no-on transient A [Drosophila lummei]
Length = 122
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 51/67 (76%), Gaps = 8/67 (11%)
Query: 340 QKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMF--------L 391
+K EWEM+E+QAEE+++R+EE M++H EMQ R+ +QEED+RRRQ +N++F L
Sbjct: 1 KKLEWEMREKQAEEMRKREEETMRRHQTEMQSRMVRQEEDMRRRQQENTLFMQAQQLNSL 60
Query: 392 VEQQQGR 398
++QQ+G
Sbjct: 61 LDQQEGF 67
>gi|406867457|gb|EKD20495.1| 4 family polyadenylate binding protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 785
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 90/207 (43%), Gaps = 28/207 (13%)
Query: 63 DGRGSDMNESRMGGG-GGGDRYFTEKIMAIQ------GPTLDLPPSEPQNKDIKFANNCR 115
D SD+N + + GG G + A GPT PQ +
Sbjct: 11 DQLASDLNNASLNGGDANGAPAINTAVPATSEDPDTAGPTPSSAAPHPQA-------SAS 63
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KAKAKL 169
LY+G + +TE + ELF G + + ++ + G+ ++Y D KA +L
Sbjct: 64 LYVGELDSSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTIDGEKALEEL 123
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++KGR +I ++ + A++ +KNL + + N+ L F FG+I V
Sbjct: 124 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQ 183
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE G SK G V + AA+QA++
Sbjct: 184 DETGASKGYGFVHYETDEAASQAIKHV 210
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 59/142 (41%), Gaps = 30/142 (21%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI------NKEKMFGFIRMDYKHNADK 164
AN +Y+ NI + T+ + ELF+ +G+ + NK + FGF+ +A K
Sbjct: 240 ANFTNIYVKNIPVEATDEEFRELFEKFGDVTSASLARDTDSNKSRGFGFVNFINHEHAAK 299
Query: 165 AKAKLDGHVLKGRSLKI-----------------RFAPINAAIK-------VKNLTSCVT 200
A +L+G KG+ L + A I A K VKNL V
Sbjct: 300 AVDELNGKDFKGQDLYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYVKNLDDDVD 359
Query: 201 NELLELAFGVFGDIERAIVIVD 222
++ L F FG I A V+ D
Sbjct: 360 DDKLRELFTPFGSITSAKVMRD 381
>gi|171681916|ref|XP_001905901.1| hypothetical protein [Podospora anserina S mat+]
gi|170940917|emb|CAP66567.1| unnamed protein product [Podospora anserina S mat+]
Length = 804
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 21/170 (12%)
Query: 93 GPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-- 150
GPT + PQ+ + LY+G + +TE + ELF G + + ++ +
Sbjct: 100 GPTPNSAAPHPQS-------SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTR 152
Query: 151 --FGFIRMDYKHNAD--KAKAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSC 198
G+ ++Y AD KA L+ ++KGR +I ++ + A++ +KNL
Sbjct: 153 RSLGYAYVNYNATADGEKALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVA 212
Query: 199 VTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
+ N+ L F FG+I V DE GNSK G V + AAA A++
Sbjct: 213 IDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAANAIKHV 262
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 58/143 (40%), Gaps = 33/143 (23%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKA 165
AN +Y+ NI ++T+ + ELF YG+ + K + FGF+ A KA
Sbjct: 292 ANFTNVYVKNIPAEVTDEEFRELFAKYGDVTSSSLARSDEGKSRGFGFVNFTTHEAASKA 351
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+L+G +G+ L + ++ +N + +KNL V
Sbjct: 352 VEELNGKDFRGQELYVGRAQKKHEREEELRRSYEAARQEKANKYQGVN--LYIKNLGDDV 409
Query: 200 TNELLELAFGVFGDIERAIVIVD 222
++ L F +G I A V+ D
Sbjct: 410 DDDKLRQMFSEYGPITSAKVMRD 432
>gi|260944998|ref|XP_002616797.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
gi|238850446|gb|EEQ39910.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
Length = 620
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 77/166 (46%), Gaps = 33/166 (19%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKA 165
AN +++ N G D TE ++ +F+PYG+ L+ K+ K FGFI + A KA
Sbjct: 229 ANFTNVFVKNFGSDFTEAELAAMFEPYGKITSLYFEKDSEGKSKGFGFINFENHDAAVKA 288
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+L+ + G+ + + ++ +N + VKNL +
Sbjct: 289 VEELNDKEVNGQKIYVGRAQKKRERIEELKKQYETTRLEKLSKYQGVN--LFVKNLDDSL 346
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
T+E+LE F FG I A V+VDE G SK G V F+ A +A+
Sbjct: 347 TSEMLEEEFKPFGTITSAKVMVDETGKSKGFGFVCFSAPEEATKAI 392
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 14/149 (9%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNAD--K 164
+ LY+G + + E + E+F P G+ + + ++ K G+ ++Y + D +
Sbjct: 48 VTSASLYVGELNPSVNEAVLYEIFSPLGQVSSIRVCRDAVTKKSLGYAYVNYHKHEDGER 107
Query: 165 AKAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIER 216
A +L+ ++ GR +I ++ + +++ +KNL + N+ L F FG I
Sbjct: 108 ALEQLNYSLIDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPDIDNKALHDTFSAFGRILS 167
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQAL 245
V DE G SKC G V + AA A+
Sbjct: 168 CKVATDEHGRSKCFGFVHYETAEAADAAI 196
>gi|345786492|ref|XP_003432832.1| PREDICTED: ribonucleoprotein PTB-binding 1 [Canis lupus familiaris]
Length = 758
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 81/168 (48%), Gaps = 9/168 (5%)
Query: 85 TEKIMAIQGPTLDLPPSEPQ-------NKDIKFANNCRLYLGNIGGDITENDIIELFKPY 137
TE + P +LPP +P+ + + +F N ++ + + GD+T ++ +L Y
Sbjct: 40 TEDAAERRAPEEELPPLDPEEIQKRLEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDY 99
Query: 138 GETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTS 197
E + F++K K F+ + A+ A L+ R L ++ P +A + V NL
Sbjct: 100 -ELKYCFVDKYKGTAFVTLLNGEQAEAAIGAFHQSRLRERELSVQLQPTDALLCVANLPP 158
Query: 198 CVTNELLELAFGVFGDIERAIVIVDER-GNSKCEGIVEFARKPAAAQA 244
T + E FG +ER ++ ER G+SK G E+ +K +AA+A
Sbjct: 159 SFTQQQFEELVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARA 206
>gi|346974495|gb|EGY17947.1| polyadenylate-binding protein [Verticillium dahliae VdLs.17]
Length = 759
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 80/170 (47%), Gaps = 21/170 (12%)
Query: 93 GPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-- 150
GPT + +PQ + LY+G + +TE + ELF G + + ++ +
Sbjct: 47 GPTPNSAVPQPQA-------SASLYVGELEPQVTEAMLFELFSHIGPVASIRVCRDAVTR 99
Query: 151 --FGFIRMDYKHNAD--KAKAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSC 198
G+ ++Y +D KA +L+ V+ GR +I ++ + A++ +KNL
Sbjct: 100 RSLGYAYVNYNTTSDGEKALEELNYTVINGRPCRIMWSQRDPALRKNGQGNVFIKNLDVA 159
Query: 199 VTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
+ N+ L F FG+I V DE GNSK G V + AAAQA++
Sbjct: 160 IDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAAAQAIKHV 209
Score = 42.0 bits (97), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 33/143 (23%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKA 165
AN +Y+ NI + ++++ +LF YGE + K + FGF+ A +A
Sbjct: 239 ANFTNVYVKNINSEASDDEFRDLFTKYGEVTSSSLARDQEGKSRGFGFVNFTTHEAASQA 298
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+L+G +G+ L + ++ +N + +KNL+ V
Sbjct: 299 VEELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARQEKANKYQGVN--LYIKNLSDDV 356
Query: 200 TNELLELAFGVFGDIERAIVIVD 222
+E L F FG I A V+ D
Sbjct: 357 DDEKLRAMFSEFGPITSAKVMRD 379
>gi|410950446|ref|XP_003981916.1| PREDICTED: ribonucleoprotein PTB-binding 1 [Felis catus]
Length = 743
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 9/161 (5%)
Query: 92 QGPTLDLPPSEPQ-------NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELF 144
+ P +LPP +P+ + + +F N ++ + + GD+T ++ +L Y E + F
Sbjct: 47 RAPEEELPPLDPEEIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDY-ELKYCF 105
Query: 145 INKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELL 204
++K K F+ + A+ A + L+ R L ++ P +A + V NL T +
Sbjct: 106 VDKYKGTAFVTLLNGEQAEAAISAFHQSRLRERELSVQLQPTDALLCVANLPPSFTQQQF 165
Query: 205 ELAFGVFGDIERAIVIVDER-GNSKCEGIVEFARKPAAAQA 244
E FG +ER ++ ER G+SK G E+ +K +AA+A
Sbjct: 166 EELVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARA 206
>gi|380494250|emb|CCF33289.1| Poly(A) RNA binding protein [Colletotrichum higginsianum]
Length = 677
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 89/203 (43%), Gaps = 27/203 (13%)
Query: 60 NRPDGRGSDMNESRMGGGGGGDRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLG 119
N D + + + + G GD T GPT PQ + LY+G
Sbjct: 23 NGADAKAAPAINTNVESGAQGDNADTA------GPTPSSAAPHPQA-------SASLYVG 69
Query: 120 NIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KAKAKLDGHV 173
+ +TE + ELF G + + ++ + G+ ++Y +D KA +L+ +
Sbjct: 70 ELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKALEELNYTL 129
Query: 174 LKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIVDERG 225
+KGR +I ++ + A++ +KNL + N+ L F FG+I V DE G
Sbjct: 130 IKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENG 189
Query: 226 NSKCEGIVEFARKPAAAQALRRC 248
NSK G V + AA+QA++
Sbjct: 190 NSKGYGFVHYETDEAASQAIKHV 212
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 62/148 (41%), Gaps = 33/148 (22%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKA 165
AN +Y+ NI G++T+++ +LF P+G+ + K + FGF+ A KA
Sbjct: 242 ANFTNIYIKNISGEVTDDEFRDLFTPFGDVTSSSLARDQEGKSRGFGFVNFTTHEAAAKA 301
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
L+G +G+ L + ++ +N + +KNL V
Sbjct: 302 VDDLNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARMEKANKYQGVN--LYIKNLDDDV 359
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNS 227
+E L F FG I A V+ D +S
Sbjct: 360 DDEKLRQLFADFGPITSAKVMRDNATDS 387
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 66/149 (44%), Gaps = 19/149 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + + F +G + ++ K +GF+ + A +A ++
Sbjct: 154 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVN 213
Query: 171 GHVLKGRSLKI-----------RFAPINAA---IKVKNLTSCVTNELLELAFGVFGDIER 216
G +L + + + +F + A I +KN++ VT++ F FGD+
Sbjct: 214 GMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNIYIKNISGEVTDDEFRDLFTPFGDVTS 273
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ + D+ G S+ G V F AAA+A+
Sbjct: 274 SSLARDQEGKSRGFGFVNFTTHEAAAKAV 302
>gi|449454582|ref|XP_004145033.1| PREDICTED: flowering time control protein FPA-like [Cucumis
sativus]
Length = 999
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 16/160 (10%)
Query: 96 LDLPP--SEP--QNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMF 151
+ LPP S P ++ D+ + L++GN+ ++T+ D++ LF +G + + +
Sbjct: 1 MPLPPKLSRPLHRDSDVPEMPSNSLWVGNLSMEVTDGDLMNLFAQFGGIDSVTSYPSRSY 60
Query: 152 GFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNL-----TSCVTNELLEL 206
FI + +A AK L G+ L+G S+KI FA A +NL + V+ E LE
Sbjct: 61 AFIFFKHMEDAQAAKEALQGYFLRGNSIKIEFA--RPAKPCRNLWVGGISPAVSREQLEE 118
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALR 246
F FG I+ + D + VE+ R A+QALR
Sbjct: 119 EFSKFGKIDEFKFLRD-----RNTAFVEYVRLEDASQALR 153
>gi|417412534|gb|JAA52646.1| Putative rna-binding protein elav/hu rrm superfamily, partial
[Desmodus rotundus]
Length = 745
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 2/142 (1%)
Query: 104 QNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNAD 163
++ + +F N ++ + + GD+T ++ +L Y E + F++K K F+ + A+
Sbjct: 53 EHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDY-ELKYCFVDKYKGTAFVTLLNGEQAE 111
Query: 164 KAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE 223
A L+ R L ++ P +A + V NL +T + E FG +ER ++ E
Sbjct: 112 AAIKSFHQSCLRERELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSE 171
Query: 224 R-GNSKCEGIVEFARKPAAAQA 244
R G+SK G E+ +K +AA+A
Sbjct: 172 RTGHSKGYGFAEYMKKDSAARA 193
>gi|356538883|ref|XP_003537930.1| PREDICTED: flowering time control protein FPA-like [Glycine max]
Length = 970
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 65/134 (48%), Gaps = 8/134 (5%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLK 175
L++GN+ D+T+ D++ELF YG + + + F+ +A AK L G L+
Sbjct: 21 LWVGNLAADVTDADLMELFAKYGALDSVTSYSARSYAFVFFKRVEDAKAAKNALQGTSLR 80
Query: 176 GRSLKIRFAPINAAIK---VKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGI 232
G SLKI FA A K V ++ VT E LE F FG IE D N+ C
Sbjct: 81 GSSLKIEFARPAKACKQLWVGGISQAVTKEDLEAEFHKFGTIEDFKFFRDR--NTAC--- 135
Query: 233 VEFARKPAAAQALR 246
VEF A QA++
Sbjct: 136 VEFFNLEDACQAMK 149
>gi|397476502|ref|XP_003809638.1| PREDICTED: ribonucleoprotein PTB-binding 1 [Pan paniscus]
Length = 884
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 79/161 (49%), Gaps = 9/161 (5%)
Query: 92 QGPTLDLPPSEPQ-------NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELF 144
+ P +LPP +P+ + + +F N ++ + + GD+T ++ +L Y E + F
Sbjct: 175 RAPEEELPPLDPEEIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDY-ELKYCF 233
Query: 145 INKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELL 204
++K K F+ + A+ A L+ R L ++ P +A + V NL +T +
Sbjct: 234 VDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQF 293
Query: 205 ELAFGVFGDIERAIVIVDER-GNSKCEGIVEFARKPAAAQA 244
E FG +ER ++ ER G SK G E+ +K +AA+A
Sbjct: 294 EELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARA 334
>gi|119604500|gb|EAW84094.1| hCG2033729, isoform CRA_c [Homo sapiens]
Length = 884
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 79/161 (49%), Gaps = 9/161 (5%)
Query: 92 QGPTLDLPPSEPQ-------NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELF 144
+ P +LPP +P+ + + +F N ++ + + GD+T ++ +L Y E + F
Sbjct: 175 RAPEEELPPLDPEEIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDY-ELKYCF 233
Query: 145 INKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELL 204
++K K F+ + A+ A L+ R L ++ P +A + V NL +T +
Sbjct: 234 VDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQF 293
Query: 205 ELAFGVFGDIERAIVIVDER-GNSKCEGIVEFARKPAAAQA 244
E FG +ER ++ ER G SK G E+ +K +AA+A
Sbjct: 294 EELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARA 334
>gi|449471899|ref|XP_004153439.1| PREDICTED: flowering time control protein FPA-like [Cucumis
sativus]
Length = 1000
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 16/160 (10%)
Query: 96 LDLPP--SEP--QNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMF 151
+ LPP S P ++ D+ + L++GN+ ++T+ D++ LF +G + + +
Sbjct: 1 MPLPPKLSRPLHRDSDVPEMPSNSLWVGNLSMEVTDGDLMNLFAQFGGIDSVTSYPSRSY 60
Query: 152 GFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNL-----TSCVTNELLEL 206
FI + +A AK L G+ L+G S+KI FA A +NL + V+ E LE
Sbjct: 61 AFIFFKHMEDAQAAKEALQGYFLRGNSIKIEFA--RPAKPCRNLWVGGISPAVSREQLEE 118
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALR 246
F FG I+ + D + VE+ R A+QALR
Sbjct: 119 EFSKFGKIDEFKFLRD-----RNTAFVEYVRLEDASQALR 153
>gi|16554843|gb|AAG37348.1| no-on transient A [Drosophila ezoana]
Length = 123
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 50/65 (76%), Gaps = 8/65 (12%)
Query: 340 QKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMF--------L 391
+K EWEM+E+QAEE+++R+EE M++H EMQ R+ +QEED+RRRQ +N++F L
Sbjct: 1 KKLEWEMREKQAEEMRKREEETMRRHQTEMQSRMVRQEEDMRRRQQENTLFMQAQQLNSL 60
Query: 392 VEQQQ 396
++QQ+
Sbjct: 61 LDQQE 65
>gi|310798668|gb|EFQ33561.1| 4 family polyadenylate binding protein [Glomerella graminicola
M1.001]
Length = 768
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 14/150 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KAK 166
+ LY+G + +TE + ELF G + + ++ + G+ ++Y +D KA
Sbjct: 63 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKAL 122
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
+L+ ++KGR +I ++ + A++ +KNL + N+ L F FG+I
Sbjct: 123 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 182
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA+QA++
Sbjct: 183 VAQDEHGNSKGYGFVHYETDEAASQAIKHV 212
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 66/149 (44%), Gaps = 19/149 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + + F +G + ++ K +GF+ + A +A ++
Sbjct: 154 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVN 213
Query: 171 GHVLKGRSLKI-----------RFAPINAA---IKVKNLTSCVTNELLELAFGVFGDIER 216
G +L + + + +F + A I VKN+ + VT++ F FGD+
Sbjct: 214 GMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNIYVKNIANEVTDDEFRDLFTAFGDVTS 273
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ + D+ G S+ G V F AAA+A+
Sbjct: 274 SSLARDQEGKSRGFGFVNFTTHEAAAKAV 302
Score = 42.0 bits (97), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 61/150 (40%), Gaps = 36/150 (24%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKA 165
AN +Y+ NI ++T+++ +LF +G+ + K + FGF+ A KA
Sbjct: 242 ANFTNIYVKNIANEVTDDEFRDLFTAFGDVTSSSLARDQEGKSRGFGFVNFTTHEAAAKA 301
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
L+G +G+ L + ++ +N + +KNL V
Sbjct: 302 VDDLNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARMEKASKYQGVN--LYIKNLDDEV 359
Query: 200 TNELLELAFGVFGDIERAIVIVD---ERGN 226
+E L F FG I A V+ D E GN
Sbjct: 360 DDEKLRQLFADFGPITSAKVMRDNATESGN 389
>gi|395756780|ref|XP_002834447.2| PREDICTED: LOW QUALITY PROTEIN: ribonucleoprotein PTB-binding 1
[Pongo abelii]
Length = 759
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 9/161 (5%)
Query: 92 QGPTLDLPPSEPQ-------NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELF 144
+ P +LPP +P+ + + +F N ++ + + GD+T ++ +L Y E + F
Sbjct: 47 RAPEEELPPLDPEEIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDY-ELKYCF 105
Query: 145 INKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELL 204
++K K F+ + A+ A L+ R L ++ P +A + V NL +T +
Sbjct: 106 VDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQF 165
Query: 205 ELAFGVFGDIERAIVIVDER-GNSKCEGIVEFARKPAAAQA 244
E FG +ER ++ ER G+SK G E+ +K +AA+A
Sbjct: 166 EELVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARA 206
>gi|121702907|ref|XP_001269718.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
gi|158512635|sp|A1CRM1.1|PABP_ASPCL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119397861|gb|EAW08292.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
Length = 754
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 80/163 (49%), Gaps = 16/163 (9%)
Query: 100 PSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIR 155
P+ P N + ++ LY+G + +TE + ELF G+ + + ++ + G+
Sbjct: 39 PTSPNNNNQ--PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAY 96
Query: 156 MDYKHNAD--KAKAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLE 205
++Y + AD +A L+ ++KG+ +I ++ + A++ +KNL S + N+ L
Sbjct: 97 VNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALH 156
Query: 206 LAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
F FG+I V DE GNSK G V + AA A++
Sbjct: 157 DTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHV 199
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 62/151 (41%), Gaps = 33/151 (21%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKA 165
AN +Y+ NI D+TE + ++F+ +GE ++ K + FGF+ +A A
Sbjct: 229 ANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHESAQAA 288
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
++ +K + L + ++ +N + VKNLT V
Sbjct: 289 VDEMHDKEVKTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVN--LYVKNLTDDV 346
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCE 230
+E L FG +G I A V+ D + E
Sbjct: 347 DDEKLRELFGPYGTITSAKVMRDSTPAERTE 377
>gi|344282763|ref|XP_003413142.1| PREDICTED: ribonucleoprotein PTB-binding 1-like [Loxodonta
africana]
Length = 754
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 79/159 (49%), Gaps = 9/159 (5%)
Query: 94 PTLDLPPSEPQ-------NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN 146
P +LPP +P+ + + +F N ++ + + GD+T ++ +L Y E + F++
Sbjct: 47 PEEELPPLDPEEIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDY-ELKYCFVD 105
Query: 147 KEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLEL 206
K K F+ + A+ A + L+ R L ++ P +A + V NL +T + E
Sbjct: 106 KYKGTAFVTLLNGEQAEAAISSFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEE 165
Query: 207 AFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQA 244
FG +ER ++ E G+SK G E+ +K +AA+A
Sbjct: 166 LVRPFGSLERCFLVYSECTGHSKGYGFAEYMKKDSAARA 204
>gi|213403408|ref|XP_002172476.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212000523|gb|EEB06183.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 662
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 16/151 (10%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD---KA 165
N LY+G + +TE + E+F G + + ++ + G+ ++Y HNAD KA
Sbjct: 78 NTSLYVGELDPSVTEAMLFEIFSTVGPVASIRVCRDAVTRQSLGYAYVNY-HNADDGEKA 136
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
+L+ ++KGR+ +I ++ + +++ +KNL + N+ L F FG I
Sbjct: 137 LEELNYSLIKGRACRIMWSQRDPSLRKTGTGNIFIKNLDPAIDNKALHDTFSAFGTILSC 196
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V +DE GNSK G V FA +A A+
Sbjct: 197 KVALDEYGNSKGYGFVHFASIDSANAAIEHV 227
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 33/166 (19%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKHNADKA 165
AN +Y+ NI ++T+ + LF+ +G + K++ FGF+ + A KA
Sbjct: 257 ANFTNVYIKNIDPEVTDEEFSGLFEKFGAITSFSLVKDESGKPRGFGFVNFESHEAAQKA 316
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+++ + G+ L + ++ +N + +KNL+ V
Sbjct: 317 VDEMNDYEFHGKKLYVGRAQKRHEREAELRKRYEQMKLEKMSKYQGVN--LFIKNLSDEV 374
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ LL+ F FG I A V+ DE G SK G V ++ A +A+
Sbjct: 375 DDNLLKTEFSAFGTITSAKVMTDENGKSKGFGFVCYSSPEEATKAI 420
>gi|356544510|ref|XP_003540693.1| PREDICTED: flowering time control protein FPA-like [Glycine max]
Length = 909
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 65/134 (48%), Gaps = 8/134 (5%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLK 175
L++GN+ D+T+ D++ELF YG + + + F+ +A AK L G L+
Sbjct: 21 LWVGNLAADVTDADLMELFAKYGALDSVTSYSARSYAFVFFKRVEDAKAAKNALQGTSLR 80
Query: 176 GRSLKIRFAPINAAIK---VKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGI 232
G SLKI FA A K V ++ VT E LE F FG IE D N+ C
Sbjct: 81 GSSLKIEFARPAKACKQLWVGGISQAVTKEDLEAEFQKFGKIEDFKFFRDR--NTAC--- 135
Query: 233 VEFARKPAAAQALR 246
VEF A QA++
Sbjct: 136 VEFFNLEDATQAMK 149
>gi|46128087|ref|XP_388597.1| hypothetical protein FG08421.1 [Gibberella zeae PH-1]
Length = 784
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 73/151 (48%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
N+ LY+G + +TE + ELF G + + ++ + G+ ++Y D KA
Sbjct: 57 NSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATPDGEKA 116
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
+L+ ++KGR +I ++ + A++ +KNL + N+ L F FG+I
Sbjct: 117 LEELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSC 176
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE G SK G V + AA+QA++
Sbjct: 177 KVAQDETGASKGYGFVHYETDEAASQAIKHV 207
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKA 165
AN +Y+ NI D+TE+D +LF+ YG+ + K + FGF+ +A KA
Sbjct: 237 ANFTNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHESASKA 296
Query: 166 KAKLDGHVLKGRSLKI 181
+L+ G+ L +
Sbjct: 297 VDELNNKDFHGQDLYV 312
>gi|302500992|ref|XP_003012489.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
gi|291176047|gb|EFE31849.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
Length = 801
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
++ LY+G + +TE + ELF G+ + + ++ + G+ ++Y + AD +A
Sbjct: 56 HSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 115
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
L+ ++KGR +I ++ + A++ +KNL + + N+ L F FG+I
Sbjct: 116 LEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSC 175
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA A++
Sbjct: 176 KVAQDEYGNSKGYGFVHYETAEAATNAIKHV 206
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 30/140 (21%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN------KEKMFGFIRMDYKHNADK 164
AN +Y+ N+ D+T+ + LF+ YGE ++ K + FGF+ A
Sbjct: 236 ANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASA 295
Query: 165 AKAKLDGHVLKGRSLKI-----------------RFAPINAAIK-------VKNLTSCVT 200
A L+ + LKG+ L + A I A K +KNL+ +
Sbjct: 296 AVEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDID 355
Query: 201 NELLELAFGVFGDIERAIVI 220
+E L F +G+I A V+
Sbjct: 356 DEKLRELFSSYGNITSAKVM 375
>gi|396492663|ref|XP_003843853.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
gi|312220433|emb|CBY00374.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
Length = 747
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
N+ LY+G + +TE + ELF G+ + + ++ + G+ ++Y + D KA
Sbjct: 45 NSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKA 104
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
+L+ V+KG+ +I ++ + A++ +KNL + N+ L F FG+I
Sbjct: 105 LEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSC 164
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA A++
Sbjct: 165 KVAQDEHGNSKGYGFVHYETAEAANNAIKHV 195
>gi|315052346|ref|XP_003175547.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
gi|311340862|gb|EFR00065.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
Length = 782
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
++ LY+G + +TE + ELF G+ + + ++ + G+ ++Y + AD +A
Sbjct: 56 HSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 115
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
L+ ++KGR +I ++ + A++ +KNL + + N+ L F FG+I
Sbjct: 116 LEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSC 175
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA A++
Sbjct: 176 KVAQDEYGNSKGYGFVHYETAEAATNAIKHV 206
Score = 41.6 bits (96), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 30/140 (21%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN------KEKMFGFIRMDYKHNADK 164
AN +Y+ N+ D+T+ + LF+ YGE ++ K + FGF+ A
Sbjct: 236 ANFTNIYVKNVEQDVTDEEFRSLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASA 295
Query: 165 AKAKLDGHVLKGRSLKI-----------------RFAPINAAIK-------VKNLTSCVT 200
A L+ + LKG+ L + A I A K +KNL+ +
Sbjct: 296 AVEGLNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDID 355
Query: 201 NELLELAFGVFGDIERAIVI 220
+E L F +G+I A V+
Sbjct: 356 DEKLRELFSSYGNITSAKVM 375
>gi|426387128|ref|XP_004060028.1| PREDICTED: ribonucleoprotein PTB-binding 1 [Gorilla gorilla
gorilla]
Length = 756
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 79/161 (49%), Gaps = 9/161 (5%)
Query: 92 QGPTLDLPPSEPQ-------NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELF 144
+ P +LPP +P+ + + +F N ++ + + GD+T ++ +L Y E + F
Sbjct: 47 RAPEEELPPLDPEEIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDY-ELKYCF 105
Query: 145 INKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELL 204
++K K F+ + A+ A L+ R L ++ P +A + V NL +T +
Sbjct: 106 VDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQF 165
Query: 205 ELAFGVFGDIERAIVIVDER-GNSKCEGIVEFARKPAAAQA 244
E FG +ER ++ ER G SK G E+ +K +AA+A
Sbjct: 166 EELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARA 206
>gi|258565691|ref|XP_002583590.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
gi|237907291|gb|EEP81692.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
Length = 765
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
++ LY+G + +TE + ELF G+ + + ++ + G+ ++Y + AD +A
Sbjct: 52 HSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 111
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
L+ ++KGR +I ++ + A++ +KNL + + N+ L F FG+I
Sbjct: 112 LEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSC 171
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA A++
Sbjct: 172 KVAQDEFGNSKGYGFVHYETAEAAQNAIKHV 202
>gi|327299218|ref|XP_003234302.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
gi|326463196|gb|EGD88649.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
Length = 781
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
++ LY+G + +TE + ELF G+ + + ++ + G+ ++Y + AD +A
Sbjct: 56 HSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 115
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
L+ ++KGR +I ++ + A++ +KNL + + N+ L F FG+I
Sbjct: 116 LEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSC 175
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA A++
Sbjct: 176 KVAQDEYGNSKGYGFVHYETAEAATNAIKHV 206
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 30/140 (21%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN------KEKMFGFIRMDYKHNADK 164
AN +Y+ N+ D+T+ + LF+ YGE ++ K + FGF+ A
Sbjct: 236 ANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASA 295
Query: 165 AKAKLDGHVLKGRSLKI-----------------RFAPINAAIK-------VKNLTSCVT 200
A L+ + LKG+ L + A I A K +KNL+ +
Sbjct: 296 AVEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDID 355
Query: 201 NELLELAFGVFGDIERAIVI 220
+E L F +G+I A V+
Sbjct: 356 DEKLRELFSSYGNITSAKVM 375
>gi|16554831|gb|AAG37342.1| no-on transient A [Drosophila americana americana]
gi|16554837|gb|AAG37345.1| no-on transient A [Drosophila americana texana]
Length = 119
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 51/67 (76%), Gaps = 8/67 (11%)
Query: 340 QKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMF--------L 391
+K EWEM+E+QAEE+++R+EE M++H EMQ R+ +QEED+RRRQ +N++F L
Sbjct: 1 KKLEWEMREKQAEEMRKREEETMRRHQTEMQSRMVRQEEDMRRRQQENTLFMQAQQLNSL 60
Query: 392 VEQQQGR 398
++QQ+G
Sbjct: 61 LDQQEGF 67
>gi|123173757|ref|NP_597709.2| ribonucleoprotein PTB-binding 1 [Homo sapiens]
gi|410217954|gb|JAA06196.1| ribonucleoprotein, PTB-binding 1 [Pan troglodytes]
gi|410256446|gb|JAA16190.1| ribonucleoprotein, PTB-binding 1 [Pan troglodytes]
gi|410353521|gb|JAA43364.1| ribonucleoprotein, PTB-binding 1 [Pan troglodytes]
Length = 756
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 79/161 (49%), Gaps = 9/161 (5%)
Query: 92 QGPTLDLPPSEPQ-------NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELF 144
+ P +LPP +P+ + + +F N ++ + + GD+T ++ +L Y E + F
Sbjct: 47 RAPEEELPPLDPEEIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDY-ELKYCF 105
Query: 145 INKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELL 204
++K K F+ + A+ A L+ R L ++ P +A + V NL +T +
Sbjct: 106 VDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQF 165
Query: 205 ELAFGVFGDIERAIVIVDER-GNSKCEGIVEFARKPAAAQA 244
E FG +ER ++ ER G SK G E+ +K +AA+A
Sbjct: 166 EELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARA 206
>gi|361128049|gb|EHL00002.1| putative Polyadenylate-binding protein, cytoplasmic and nuclear
[Glarea lozoyensis 74030]
Length = 783
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 88/201 (43%), Gaps = 15/201 (7%)
Query: 63 DGRGSDMNESRMGGG-GGGDRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNI 121
D +D+N + + GG G + + D P + + LY+G +
Sbjct: 10 DQLAADLNNTSLNGGDSNGAPAINTDVSNLSNEDPDTAGPTPSSAVPHPQASASLYVGEL 69
Query: 122 GGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KAKAKLDGHVLK 175
+TE + ELF G + + ++ + G+ ++Y D KA +L+ ++K
Sbjct: 70 DPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTTDGEKALEELNYTLIK 129
Query: 176 GRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNS 227
GR +I ++ + A++ +KNL + + N+ L F FG+I V DE G S
Sbjct: 130 GRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDESGAS 189
Query: 228 KCEGIVEFARKPAAAQALRRC 248
K G V + AA+QA++
Sbjct: 190 KGYGFVHYETDEAASQAIKHV 210
Score = 38.9 bits (89), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 57/142 (40%), Gaps = 30/142 (21%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI------NKEKMFGFIRMDYKHNADK 164
AN +Y+ NI + T+ + ELF+ +G+ + K + FGF+ +A
Sbjct: 240 ANFTNIYVKNIPVEATDEEFRELFEKFGDVTSASLARDQDTGKSRGFGFVNFINHEHAAT 299
Query: 165 AKAKLDGHVLKGRSLKI-----------------RFAPINAAIK-------VKNLTSCVT 200
A +L+G KG+ L + A I A K VKNL V
Sbjct: 300 AVDELNGKDFKGQDLYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYVKNLDDDVD 359
Query: 201 NELLELAFGVFGDIERAIVIVD 222
+E L F FG I A V+ D
Sbjct: 360 DEKLRELFTPFGAITSAKVMRD 381
>gi|432868828|ref|XP_004071653.1| PREDICTED: LOW QUALITY PROTEIN: ribonucleoprotein PTB-binding
1-like [Oryzias latipes]
Length = 726
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 2/137 (1%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168
+F N ++ + N+ DIT ++ EL Y + + F++K K F+ + A A +
Sbjct: 89 EFYNRRKIIIKNLPADITNQEVHELLGNY-DLKYCFVDKYKGTAFVTLLNGEQAQCAIKE 147
Query: 169 LDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNS 227
H+L+ R + ++ P +A + + NL T + E FG++ER ++ G+S
Sbjct: 148 FHQHLLRDREISVQLQPTDALLCIANLPQAFTQQQFEELVRPFGNLERCFLVYSATTGHS 207
Query: 228 KCEGIVEFARKPAAAQA 244
K G VE+ +K +AA+A
Sbjct: 208 KGYGFVEYMKKDSAARA 224
>gi|29789209|ref|NP_082187.1| ribonucleoprotein PTB-binding 1 [Mus musculus]
gi|85701216|sp|Q9CW46.2|RAVR1_MOUSE RecName: Full=Ribonucleoprotein PTB-binding 1; AltName:
Full=Protein raver-1
gi|26351115|dbj|BAC39194.1| unnamed protein product [Mus musculus]
gi|30721603|gb|AAP33691.1| RAVER1 [Mus musculus]
gi|82696998|gb|AAI08393.1| Ribonucleoprotein, PTB-binding 1 [Mus musculus]
gi|127802986|gb|AAH58271.2| Ribonucleoprotein, PTB-binding 1 [Mus musculus]
gi|148693209|gb|EDL25156.1| mCG1050220 [Mus musculus]
gi|148693211|gb|EDL25158.1| mCG14049, isoform CRA_b [Mus musculus]
Length = 748
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 79/161 (49%), Gaps = 9/161 (5%)
Query: 92 QGPTLDLPPSEPQ-------NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELF 144
+ P +LPP +P+ + + +F N ++ + + GD+T ++ +L Y E + F
Sbjct: 30 RAPEQELPPLDPEEIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDY-ELKYCF 88
Query: 145 INKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELL 204
++K K F+ + A+ A L+ R L ++ P +A + V NL +T
Sbjct: 89 VDKYKGTAFVTLLNGEQAEAAINTFHQSRLRERELSVQLQPTDALLCVANLPPSLTQAQF 148
Query: 205 ELAFGVFGDIERAIVIVDER-GNSKCEGIVEFARKPAAAQA 244
E FG +ER ++ ER G+SK G E+ +K +AA+A
Sbjct: 149 EELVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARA 189
>gi|440638008|gb|ELR07927.1| hypothetical protein GMDG_02786 [Geomyces destructans 20631-21]
Length = 805
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 73/150 (48%), Gaps = 14/150 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KAK 166
+ LY+G + +TE + ELF G + + ++ + G+ ++Y D KA
Sbjct: 61 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTIDGEKAL 120
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
+L+ ++KGR +I ++ + A++ +KNL + N+ L F FG+I
Sbjct: 121 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 180
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA+QA++
Sbjct: 181 VAQDESGNSKGYGFVHYETDEAASQAIKHV 210
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 57/141 (40%), Gaps = 29/141 (20%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKHNADKA 165
AN +Y+ NI D T++ ELF+ +G+ + +++ FGF+ +A A
Sbjct: 240 ANFTNIYVKNIPADATDDQFRELFEKFGDVTSASLARDEAGKNRGFGFVNFINHEHASAA 299
Query: 166 KAKLDGHVLKGRSLKI-----------------RFAPINAAIK-------VKNLTSCVTN 201
+L+G G+ L + A I A K VKNL V +
Sbjct: 300 VDELNGKDFMGQDLYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYVKNLEDDVDD 359
Query: 202 ELLELAFGVFGDIERAIVIVD 222
E L F +G I A V+ D
Sbjct: 360 EKLRELFAPYGAITSAKVMRD 380
>gi|355703130|gb|EHH29621.1| hypothetical protein EGK_10095 [Macaca mulatta]
Length = 756
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 79/161 (49%), Gaps = 9/161 (5%)
Query: 92 QGPTLDLPPSEPQ-------NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELF 144
+ P +LPP +P+ + + +F ++ + + GD+T ++ +L Y E + F
Sbjct: 47 RAPEEELPPLDPEEIRKRLEHTERQFRTRRKILIRGLPGDVTNQEVHDLLSDY-ELKYCF 105
Query: 145 INKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELL 204
++K K F+ + A+ A L+ R L ++ P +A + V NL +T +
Sbjct: 106 VDKYKGTAFVTLLNGEQAEAAINAFHQSCLRERELSVQLQPTDALLCVANLPPSLTQQQF 165
Query: 205 ELAFGVFGDIERAIVIVDER-GNSKCEGIVEFARKPAAAQA 244
E FG +ER ++ ER G+SK G E+ +K +AA+A
Sbjct: 166 EELVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARA 206
>gi|239615396|gb|EEQ92383.1| polyadenylate-binding protein [Ajellomyces dermatitidis ER-3]
gi|327356743|gb|EGE85600.1| polyadenylate-binding protein [Ajellomyces dermatitidis ATCC 18188]
Length = 783
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
++ LY+G + +TE + ELF G+ + + ++ + G+ ++Y + AD +A
Sbjct: 53 HSASLYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 112
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
L+ ++KG+ +I ++ + A++ +KNL + + N+ L F FG+I
Sbjct: 113 LEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSC 172
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA A++
Sbjct: 173 KVAQDEFGNSKGYGFVHYETAEAATNAIKHV 203
Score = 45.1 bits (105), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 22/159 (13%)
Query: 116 LYLGNIGGDITENDIIELFKPYGE------TQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+++ N+ I + + F +G Q+ F N K +GF+ + A A +
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAATNAIKHV 203
Query: 170 DGHVLKGRSLKI-----------RFAPINAA---IKVKNLTSCVTNELLELAFGVFGDIE 215
+G +L + + + +F + A + VKNL + VTNE FG +GDI
Sbjct: 204 NGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLDTEVTNEEFRELFGKYGDIT 263
Query: 216 RAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCF 253
A + D E G S+ G V F + +AA A+ + F
Sbjct: 264 SASITHDSETGKSRGFGFVNFVKHESAAAAVEELNDKEF 302
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 34/152 (22%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN------KEKMFGFIRMDYKHNADK 164
AN +Y+ N+ ++T + ELF YG+ I K + FGF+ +A
Sbjct: 233 ANFTNVYVKNLDTEVTNEEFRELFGKYGDITSASITHDSETGKSRGFGFVNFVKHESAAA 292
Query: 165 AKAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSC 198
A +L+ KG+ L + ++ +N + VKNLT
Sbjct: 293 AVEELNDKEFKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVN--LYVKNLTDD 350
Query: 199 VTNELLELAFGVFGDIERAIVIVDERGNSKCE 230
+ +E L F FG+I A V+ D ++ E
Sbjct: 351 IDDEKLRDLFIGFGNITSARVMRDTIADAGSE 382
>gi|12836469|dbj|BAB23670.1| unnamed protein product [Mus musculus]
Length = 756
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 79/161 (49%), Gaps = 9/161 (5%)
Query: 92 QGPTLDLPPSEPQ-------NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELF 144
+ P +LPP +P+ + + +F N ++ + + GD+T ++ +L Y E + F
Sbjct: 38 RAPEQELPPLDPEEIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDY-ELKYCF 96
Query: 145 INKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELL 204
++K K F+ + A+ A L+ R L ++ P +A + V NL +T
Sbjct: 97 VDKYKGTAFVTLLNGEQAEAAINTFHQSRLRERELSVQLQPTDALLCVANLPPSLTQAQF 156
Query: 205 ELAFGVFGDIERAIVIVDER-GNSKCEGIVEFARKPAAAQA 244
E FG +ER ++ ER G+SK G E+ +K +AA+A
Sbjct: 157 EELVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARA 197
>gi|326478130|gb|EGE02140.1| polyadenylate-binding protein [Trichophyton equinum CBS 127.97]
Length = 782
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
++ LY+G + +TE + ELF G+ + + ++ + G+ ++Y + AD +A
Sbjct: 56 HSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 115
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
L+ ++KGR +I ++ + A++ +KNL + + N+ L F FG+I
Sbjct: 116 LEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSC 175
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA A++
Sbjct: 176 KVAQDEYGNSKGYGFVHYETAEAATNAIKHV 206
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 30/140 (21%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN------KEKMFGFIRMDYKHNADK 164
AN +Y+ N+ D+T+ + LF+ YGE ++ K + FGF+ A
Sbjct: 236 ANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASA 295
Query: 165 AKAKLDGHVLKGRSLKI-----------------RFAPINAAIK-------VKNLTSCVT 200
A L+ + LKG+ L + A I A K +KNL+ +
Sbjct: 296 AVEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDID 355
Query: 201 NELLELAFGVFGDIERAIVI 220
+E L F +G+I A V+
Sbjct: 356 DEKLRELFSSYGNITSAKVM 375
>gi|345561329|gb|EGX44424.1| hypothetical protein AOL_s00193g6 [Arthrobotrys oligospora ATCC
24927]
Length = 744
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
++ LY+G + +TE + ELF G+ + + ++ + G+ ++Y + AD +A
Sbjct: 49 HSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 108
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
+L+ ++KGR +I ++ + A++ +KNL + N+ L F FG+I
Sbjct: 109 LEELNYTLIKGRPCRIMWSQRDPALRKTGHGNVFIKNLDIAIDNKALHDTFAAFGNILSC 168
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA A++
Sbjct: 169 KVAQDENGNSKGYGFVHYETAEAATNAIKHV 199
>gi|302658195|ref|XP_003020804.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
gi|291184669|gb|EFE40186.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
Length = 816
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
++ LY+G + +TE + ELF G+ + + ++ + G+ ++Y + AD +A
Sbjct: 72 HSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 131
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
L+ ++KGR +I ++ + A++ +KNL + + N+ L F FG+I
Sbjct: 132 LEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSC 191
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA A++
Sbjct: 192 KVAQDEYGNSKGYGFVHYETAEAATNAIKHV 222
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 30/140 (21%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN------KEKMFGFIRMDYKHNADK 164
AN +Y+ N+ D+T+ + LF+ YGE ++ K + FGF+ A
Sbjct: 252 ANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASA 311
Query: 165 AKAKLDGHVLKGRSLKI-----------------RFAPINAAIK-------VKNLTSCVT 200
A L+ + LKG+ L + A I A K +KNL+ +
Sbjct: 312 AVEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDID 371
Query: 201 NELLELAFGVFGDIERAIVI 220
+E L F +G+I A V+
Sbjct: 372 DEKLRELFSSYGNITSAKVM 391
>gi|119189891|ref|XP_001245552.1| hypothetical protein CIMG_04993 [Coccidioides immitis RS]
gi|121937111|sp|Q1DXH0.1|PABP_COCIM RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|392868454|gb|EAS34245.2| polyadenylate-binding protein, cytoplasmic and nuclear
[Coccidioides immitis RS]
Length = 768
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
++ LY+G + +TE + ELF G+ + + ++ + G+ ++Y + AD +A
Sbjct: 53 HSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 112
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
L+ ++KGR +I ++ + A++ +KNL + + N+ L F FG+I
Sbjct: 113 LEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSC 172
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA A++
Sbjct: 173 KVAQDEFGNSKGYGFVHYETAEAAQNAIKHV 203
Score = 42.0 bits (97), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 56/142 (39%), Gaps = 30/142 (21%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI------NKEKMFGFIRMDYKHNADK 164
AN +Y+ NI D TE + +LF+ +GE + K + FGF+ NA
Sbjct: 233 ANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAA 292
Query: 165 AKAKLDGHVLKGRSLKI-----------------RFAPINAAIK-------VKNLTSCVT 200
A L+ KG+ L + A I A K +KNL+ +
Sbjct: 293 AVEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDID 352
Query: 201 NELLELAFGVFGDIERAIVIVD 222
+E L F +G I A V+ D
Sbjct: 353 DEKLRELFSSYGTITSAKVMRD 374
>gi|320032897|gb|EFW14847.1| polyadenylate-binding protein [Coccidioides posadasii str.
Silveira]
Length = 768
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
++ LY+G + +TE + ELF G+ + + ++ + G+ ++Y + AD +A
Sbjct: 53 HSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 112
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
L+ ++KGR +I ++ + A++ +KNL + + N+ L F FG+I
Sbjct: 113 LEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSC 172
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA A++
Sbjct: 173 KVAQDEFGNSKGYGFVHYETAEAAQNAIKHV 203
Score = 42.0 bits (97), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 56/142 (39%), Gaps = 30/142 (21%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI------NKEKMFGFIRMDYKHNADK 164
AN +Y+ NI D TE + +LF+ +GE + K + FGF+ NA
Sbjct: 233 ANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAA 292
Query: 165 AKAKLDGHVLKGRSLKI-----------------RFAPINAAIK-------VKNLTSCVT 200
A L+ KG+ L + A I A K +KNL+ +
Sbjct: 293 AVEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDID 352
Query: 201 NELLELAFGVFGDIERAIVIVD 222
+E L F +G I A V+ D
Sbjct: 353 DEKLRELFSSYGTITSAKVMRD 374
>gi|303322729|ref|XP_003071356.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240111058|gb|EER29211.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 768
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
++ LY+G + +TE + ELF G+ + + ++ + G+ ++Y + AD +A
Sbjct: 53 HSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 112
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
L+ ++KGR +I ++ + A++ +KNL + + N+ L F FG+I
Sbjct: 113 LEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSC 172
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA A++
Sbjct: 173 KVAQDEFGNSKGYGFVHYETAEAAQNAIKHV 203
Score = 42.0 bits (97), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 56/142 (39%), Gaps = 30/142 (21%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI------NKEKMFGFIRMDYKHNADK 164
AN +Y+ NI D TE + +LF+ +GE + K + FGF+ NA
Sbjct: 233 ANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAA 292
Query: 165 AKAKLDGHVLKGRSLKI-----------------RFAPINAAIK-------VKNLTSCVT 200
A L+ KG+ L + A I A K +KNL+ +
Sbjct: 293 AVEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDID 352
Query: 201 NELLELAFGVFGDIERAIVIVD 222
+E L F +G I A V+ D
Sbjct: 353 DEKLRELFSSYGTITSAKVMRD 374
>gi|408395605|gb|EKJ74783.1| hypothetical protein FPSE_05031 [Fusarium pseudograminearum CS3096]
Length = 749
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 73/151 (48%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
N+ LY+G + +TE + ELF G + + ++ + G+ ++Y D KA
Sbjct: 57 NSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATPDGEKA 116
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
+L+ ++KGR +I ++ + A++ +KNL + N+ L F FG+I
Sbjct: 117 LEELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSC 176
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE G SK G V + AA+QA++
Sbjct: 177 KVAQDETGASKGYGFVHYETDEAASQAIKHV 207
Score = 41.6 bits (96), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKA 165
AN +Y+ NI D+TE+D +LF+ YG+ + K + FGF+ +A KA
Sbjct: 237 ANFTNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHESAFKA 296
Query: 166 KAKLDGHVLKGRSLKI 181
+L+ G+ L +
Sbjct: 297 VDELNNKDFHGQDLYV 312
>gi|320581683|gb|EFW95902.1| Poly(A) binding protein [Ogataea parapolymorpha DL-1]
Length = 629
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 14/146 (9%)
Query: 114 CRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KAKA 167
LY+G + +TE+D+ E+F P G+ + + ++ + G+ ++++ +AD KA
Sbjct: 47 ASLYVGELDPSVTESDLFEVFSPIGQVSTIRVCRDAVSKQSLGYAYVNFQSHADGEKALE 106
Query: 168 KLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIV 219
+L+ +KG++ +I ++ + +++ +KNL + N+ L F FG I +
Sbjct: 107 ELNYTPIKGKACRIMWSQRDPSLRRNGSGNIFIKNLHPAIDNKTLHDTFSAFGKILSCKI 166
Query: 220 IVDERGNSKCEGIVEFARKPAAAQAL 245
DE GNSK G V + +A A+
Sbjct: 167 ATDENGNSKGFGFVHYEESESAKAAI 192
>gi|378732913|gb|EHY59372.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 779
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
++ LY+G + +TE + ELF G+ + + ++ + G+ ++Y + AD +A
Sbjct: 59 HSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 118
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
L+ +KGR +I ++ + A++ +KNL + + N+ L F FG+I
Sbjct: 119 LEDLNYTSIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFSQFGNILSC 178
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA QA++
Sbjct: 179 KVAQDELGNSKGYGFVHYETAEAANQAIKSV 209
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 33/143 (23%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKA 165
AN +Y+ NI +++ + +LF+PYGE I K + FGF+ +A KA
Sbjct: 239 ANFTNVYIKNIDESVSDEEFTKLFEPYGEVVSATITRDENGKSRGFGFVNFASHESAAKA 298
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+L+ G+ L + ++ +N + VKNLT V
Sbjct: 299 VEELNDKEFHGKKLYVGRAQKKHEREEELRRQYEAARMEKASKYQGVN--LYVKNLTDDV 356
Query: 200 TNELLELAFGVFGDIERAIVIVD 222
++ L F +G I A V+ D
Sbjct: 357 DDDKLRELFSSYGTITSAKVMRD 379
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/157 (20%), Positives = 68/157 (43%), Gaps = 19/157 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKHNADKAKAKLD 170
+++ N+ I + + F +G + ++++ +GF+ + A++A ++
Sbjct: 151 VFIKNLDAAIDNKALHDTFSQFGNILSCKVAQDELGNSKGYGFVHYETAEAANQAIKSVN 210
Query: 171 GHVL-------------KGRSLKIRFAPIN-AAIKVKNLTSCVTNELLELAFGVFGDIER 216
G +L + R K+ N + +KN+ V++E F +G++
Sbjct: 211 GMLLNDKKVFVGHHIAKRDRQSKLEEMKANFTNVYIKNIDESVSDEEFTKLFEPYGEVVS 270
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCF 253
A + DE G S+ G V FA +AA+A+ + F
Sbjct: 271 ATITRDENGKSRGFGFVNFASHESAAKAVEELNDKEF 307
>gi|261199248|ref|XP_002626025.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
gi|239594233|gb|EEQ76814.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
Length = 783
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
++ LY+G + +TE + ELF G+ + + ++ + G+ ++Y + AD +A
Sbjct: 53 HSASLYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 112
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
L+ ++KG+ +I ++ + A++ +KNL + + N+ L F FG+I
Sbjct: 113 LEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSC 172
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA A++
Sbjct: 173 KVAQDEFGNSKGYGFVHYETAEAATNAIKHV 203
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 22/159 (13%)
Query: 116 LYLGNIGGDITENDIIELFKPYGE------TQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+++ N+ I + + F +G Q+ F N K +GF+ + A A +
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAATNAIKHV 203
Query: 170 DGHVLKGRSLKI-----------RFAPINAA---IKVKNLTSCVTNELLELAFGVFGDIE 215
+G +L + + + +F + A + VKNL + VTNE FG +GDI
Sbjct: 204 NGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLDTKVTNEEFRELFGKYGDIT 263
Query: 216 RAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCF 253
A + D E G S+ G V F + +AA A+ + F
Sbjct: 264 SASITHDSETGKSRGFGFVNFVKHESAAAAVEELNDKEF 302
Score = 38.9 bits (89), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 60/152 (39%), Gaps = 34/152 (22%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN------KEKMFGFIRMDYKHNADK 164
AN +Y+ N+ +T + ELF YG+ I K + FGF+ +A
Sbjct: 233 ANFTNVYVKNLDTKVTNEEFRELFGKYGDITSASITHDSETGKSRGFGFVNFVKHESAAA 292
Query: 165 AKAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSC 198
A +L+ KG+ L + ++ +N + VKNLT
Sbjct: 293 AVEELNDKEFKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVN--LYVKNLTDD 350
Query: 199 VTNELLELAFGVFGDIERAIVIVDERGNSKCE 230
+ +E L F FG+I A V+ D ++ E
Sbjct: 351 IDDEKLRDLFIGFGNITSARVMRDTIADAGSE 382
>gi|74759693|sp|Q8IY67.1|RAVR1_HUMAN RecName: Full=Ribonucleoprotein PTB-binding 1; AltName:
Full=Protein raver-1
Length = 606
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 79/161 (49%), Gaps = 9/161 (5%)
Query: 92 QGPTLDLPPSEPQ-------NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELF 144
+ P +LPP +P+ + + +F N ++ + + GD+T ++ +L Y E + F
Sbjct: 30 RAPEEELPPLDPEEIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDY-ELKYCF 88
Query: 145 INKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELL 204
++K K F+ + A+ A L+ R L ++ P +A + V NL +T +
Sbjct: 89 VDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQF 148
Query: 205 ELAFGVFGDIERAIVIVDER-GNSKCEGIVEFARKPAAAQA 244
E FG +ER ++ ER G SK G E+ +K +AA+A
Sbjct: 149 EELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARA 189
>gi|62078607|ref|NP_001013961.1| ribonucleoprotein PTB-binding 1 [Rattus norvegicus]
gi|81910350|sp|Q5XI28.1|RAVR1_RAT RecName: Full=Ribonucleoprotein PTB-binding 1; AltName:
Full=Protein raver-1
gi|54035337|gb|AAH83865.1| Ribonucleoprotein, PTB-binding 1 [Rattus norvegicus]
gi|149020521|gb|EDL78326.1| RAVER1 homolog (human), isoform CRA_b [Rattus norvegicus]
Length = 748
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 9/159 (5%)
Query: 94 PTLDLPPSEPQ-------NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN 146
P +LPP +P+ + + +F N ++ + + GD+T ++ +L Y E + F++
Sbjct: 32 PEQELPPLDPEEIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDY-ELKYCFVD 90
Query: 147 KEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLEL 206
K K F+ + A+ A L+ R L ++ P +A + V NL +T E
Sbjct: 91 KYKGTAFVTLLNGEQAEAAINTFHQSRLRERELSVQLQPTDALLCVANLPPSLTQAQFEE 150
Query: 207 AFGVFGDIERAIVIVDER-GNSKCEGIVEFARKPAAAQA 244
FG +ER ++ ER G+SK G E+ +K +AA+A
Sbjct: 151 LVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARA 189
>gi|426228965|ref|XP_004008565.1| PREDICTED: LOW QUALITY PROTEIN: ribonucleoprotein PTB-binding 1
[Ovis aries]
Length = 754
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 71/143 (49%), Gaps = 2/143 (1%)
Query: 104 QNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNAD 163
++ + +F N ++ + + GD+T ++ +L + Y E + F++K K F+ + A+
Sbjct: 66 EHTERQFRNRRKILIRGLPGDVTNQEVHDLLRDY-ELKYCFVDKYKGTAFVTLLNGEQAE 124
Query: 164 KAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE 223
A + L+ R L ++ P +A + V NL +T + E FG +ER ++ E
Sbjct: 125 AAISTFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSE 184
Query: 224 R-GNSKCEGIVEFARKPAAAQAL 245
R G+SK G E+ + P + L
Sbjct: 185 RTGHSKGYGFAEYMKXPLGPRTL 207
>gi|358372137|dbj|GAA88742.1| polyadenylate-binding protein [Aspergillus kawachii IFO 4308]
Length = 763
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 86/178 (48%), Gaps = 22/178 (12%)
Query: 85 TEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELF 144
T ++ A++ T P+ N+ ++ LY+G + +TE + ELF G+ +
Sbjct: 31 TPEVTAVENST----PASAANQ----PHSASLYVGELDPSVTEAMLYELFSSIGQVASIR 82
Query: 145 INKEKM----FGFIRMDYKHNAD--KAKAKLDGHVLKGRSLKIRFAPINAAIK------- 191
+ ++ + G+ ++Y + AD +A L+ ++KG+ +I ++ + A++
Sbjct: 83 VCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNV 142
Query: 192 -VKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
+KNL S + N+ L F FG+I V DE GNSK G V + AA A++
Sbjct: 143 FIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHV 200
Score = 39.3 bits (90), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 30/143 (20%), Positives = 61/143 (42%), Gaps = 33/143 (23%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKA 165
AN +Y+ N+ +I +++ ++F+ +GE ++ K + FGF+ +A A
Sbjct: 230 ANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAA 289
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+++ ++ + L + ++ +N + VKNLT +
Sbjct: 290 VEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVN--LYVKNLTDDI 347
Query: 200 TNELLELAFGVFGDIERAIVIVD 222
+E L FG +G I A V+ D
Sbjct: 348 DDEKLRELFGPYGTITSAKVMRD 370
>gi|403296184|ref|XP_003938998.1| PREDICTED: ribonucleoprotein PTB-binding 1 [Saimiri boliviensis
boliviensis]
Length = 754
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 79/161 (49%), Gaps = 9/161 (5%)
Query: 92 QGPTLDLPPSEPQ-------NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELF 144
+ P +LPP +P+ + + +F N ++ + + GD+T ++ +L + Y E + F
Sbjct: 47 RAPEEELPPLDPEEIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVHDLLRAY-ELKYCF 105
Query: 145 INKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELL 204
++K K F+ + A+ A L+ L ++ P +A + V NL T +
Sbjct: 106 VDKYKGTAFVTLLNGEQAEAAIRAFHQRRLREHELSVQLQPTDALLCVANLPPSFTQQQF 165
Query: 205 ELAFGVFGDIERAIVIVDER-GNSKCEGIVEFARKPAAAQA 244
E FG +ER ++ ER G+SK G E+ +K +AA+A
Sbjct: 166 EELVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARA 206
>gi|317025248|ref|XP_001388739.2| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
niger CBS 513.88]
gi|350637942|gb|EHA26298.1| hypothetical protein ASPNIDRAFT_46760 [Aspergillus niger ATCC 1015]
Length = 764
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
++ LY+G + +TE + ELF G+ + + ++ + G+ ++Y + AD +A
Sbjct: 52 HSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 111
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
L+ ++KG+ +I ++ + A++ +KNL S + N+ L F FG+I
Sbjct: 112 LEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSC 171
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA A++
Sbjct: 172 KVAQDEFGNSKGYGFVHYETAEAANNAIKHV 202
Score = 39.3 bits (90), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 30/143 (20%), Positives = 61/143 (42%), Gaps = 33/143 (23%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKA 165
AN +Y+ N+ +I +++ ++F+ +GE ++ K + FGF+ +A A
Sbjct: 232 ANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAA 291
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+++ ++ + L + ++ +N + VKNLT +
Sbjct: 292 VEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVN--LYVKNLTDDI 349
Query: 200 TNELLELAFGVFGDIERAIVIVD 222
+E L FG +G I A V+ D
Sbjct: 350 DDEKLRELFGPYGTITSAKVMRD 372
>gi|154275140|ref|XP_001538421.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
gi|150414861|gb|EDN10223.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
Length = 732
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
++ LY+G + +TE + ELF G+ + + ++ + G+ ++Y + AD +A
Sbjct: 53 HSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 112
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
L+ ++KG+ +I ++ + A++ +KNL + + N+ L F FG+I
Sbjct: 113 LEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSC 172
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA A++
Sbjct: 173 KVAQDEFGNSKGYGFVHYETAEAATNAIKHV 203
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 62/152 (40%), Gaps = 34/152 (22%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN------KEKMFGFIRMDYKHNADK 164
AN +Y+ N+ +++ + ELF+ YGE I+ K + FGF +A
Sbjct: 233 ANFTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFGFFYFLKHESAAA 292
Query: 165 AKAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSC 198
A +L+ KG+ L + ++ +N + VKNLT
Sbjct: 293 AVEELNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVN--LYVKNLTDD 350
Query: 199 VTNELLELAFGVFGDIERAIVIVDERGNSKCE 230
+ +E L F FG+I A V+ D G+ E
Sbjct: 351 IDDEKLRDLFISFGNITSARVMRDTAGDPGSE 382
>gi|242802487|ref|XP_002483981.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
gi|218717326|gb|EED16747.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
Length = 751
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
++ LY+G + +TE + ELF G+ + + ++ + G+ ++Y + AD +A
Sbjct: 48 HSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 107
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
L+ ++KGR +I ++ + A++ +KNL + + N+ L F FG+I
Sbjct: 108 LEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSC 167
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA A++
Sbjct: 168 KVAQDEFGNSKGYGFVHYETAEAANNAIKHV 198
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 59/148 (39%), Gaps = 33/148 (22%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKA 165
AN +Y+ NI ++T+ + ELF YG+ I+ K + FGF+ NA A
Sbjct: 228 ANFTNVYVKNIDPEVTDEEFRELFGKYGDITSATISRDDSGKSRGFGFVNYVDHQNAQSA 287
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+L+ + L + ++ +N + VKNLT V
Sbjct: 288 VDELNDKDFHSQKLYVGRAQKKHEREEELRRQYEAARLEKASKYQGVN--LYVKNLTDDV 345
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNS 227
++ L F FG I A V+ D G S
Sbjct: 346 DDDKLRELFSPFGTITSAKVMRDTVGVS 373
>gi|169771151|ref|XP_001820045.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|317144326|ref|XP_003189588.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|121923334|sp|Q2UK72.1|PABP_ASPOR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|83767904|dbj|BAE58043.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391872693|gb|EIT81794.1| polyadenylate-binding protein [Aspergillus oryzae 3.042]
Length = 765
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
++ LY+G + +TE + ELF G+ + + ++ + G+ ++Y + AD +A
Sbjct: 47 HSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 106
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
L+ ++KG+ +I ++ + A++ +KNL S + N+ L F FG+I
Sbjct: 107 LEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSC 166
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA A++
Sbjct: 167 KVAQDEFGNSKGYGFVHYETAEAANNAIKHV 197
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 33/143 (23%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKA 165
AN +Y+ NI D+TE + ELF+ +GE ++ K + FGF+ +A A
Sbjct: 227 ANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAA 286
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+++ ++ + L + ++ +N + VKNLT V
Sbjct: 287 VDEMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVN--LYVKNLTDDV 344
Query: 200 TNELLELAFGVFGDIERAIVIVD 222
+E L FG +G I A V+ D
Sbjct: 345 DDEKLRELFGPYGTITSAKVMRD 367
>gi|158512764|sp|A2Q848.1|PABP_ASPNC RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|134054831|emb|CAK43671.1| unnamed protein product [Aspergillus niger]
Length = 731
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
++ LY+G + +TE + ELF G+ + + ++ + G+ ++Y + AD +A
Sbjct: 52 HSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 111
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
L+ ++KG+ +I ++ + A++ +KNL S + N+ L F FG+I
Sbjct: 112 LEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSC 171
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA A++
Sbjct: 172 KVAQDEFGNSKGYGFVHYETAEAANNAIKHV 202
Score = 38.9 bits (89), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 30/143 (20%), Positives = 61/143 (42%), Gaps = 33/143 (23%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKA 165
AN +Y+ N+ +I +++ ++F+ +GE ++ K + FGF+ +A A
Sbjct: 232 ANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAA 291
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+++ ++ + L + ++ +N + VKNLT +
Sbjct: 292 VEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVN--LYVKNLTDDI 349
Query: 200 TNELLELAFGVFGDIERAIVIVD 222
+E L FG +G I A V+ D
Sbjct: 350 DDEKLRELFGPYGTITSAKVMRD 372
>gi|452001105|gb|EMD93565.1| hypothetical protein COCHEDRAFT_1096208 [Cochliobolus
heterostrophus C5]
Length = 749
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
N+ LY+G + +TE + ELF G+ + + ++ + G+ ++Y + D KA
Sbjct: 46 NSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKA 105
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
+L+ V+KG+ +I ++ + A++ +KNL + N+ L F FG+I
Sbjct: 106 LEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSC 165
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA A++
Sbjct: 166 KVAQDELGNSKGYGFVHYETAEAANNAIKHV 196
>gi|431918980|gb|ELK17847.1| Ribonucleoprotein PTB-binding 1 [Pteropus alecto]
Length = 719
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 73/142 (51%), Gaps = 2/142 (1%)
Query: 104 QNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNAD 163
++ + +F N ++ + + GD+T ++ +L Y E + F++K K F+ + A+
Sbjct: 49 EHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDY-ELKYCFVDKYKGTAFVTLLNGEQAE 107
Query: 164 KAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE 223
A + L+ R L ++ P +A + V NL +T + E FG +ER ++ E
Sbjct: 108 AAISTFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSE 167
Query: 224 R-GNSKCEGIVEFARKPAAAQA 244
R G+SK G E+ +K +AA+A
Sbjct: 168 RTGHSKGYGFAEYMKKDSAARA 189
>gi|238486326|ref|XP_002374401.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
gi|220699280|gb|EED55619.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
Length = 713
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
++ LY+G + +TE + ELF G+ + + ++ + G+ ++Y + AD +A
Sbjct: 47 HSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 106
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
L+ ++KG+ +I ++ + A++ +KNL S + N+ L F FG+I
Sbjct: 107 LEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSC 166
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA A++
Sbjct: 167 KVAQDEFGNSKGYGFVHYETAEAANNAIKHV 197
Score = 45.4 bits (106), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 33/143 (23%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKA 165
AN +Y+ NI D+TE + ELF+ +GE ++ K + FGF+ +A A
Sbjct: 227 ANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAA 286
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+++ ++ + L + ++ +N + VKNLT V
Sbjct: 287 VDEMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVN--LYVKNLTDDV 344
Query: 200 TNELLELAFGVFGDIERAIVIVD 222
+E L FG +G I A V+ D
Sbjct: 345 DDEKLRELFGPYGTITSAKVMRD 367
>gi|29351587|gb|AAH49227.1| Sfpq protein, partial [Mus musculus]
Length = 261
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 71/122 (58%), Gaps = 13/122 (10%)
Query: 264 VEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHET 323
VEPLE D+ DGL E+ + +K P + K+R+ PRFA +FE+EY RWK L E+ + +
Sbjct: 1 VEPLEQLDDEDGLPEK-LAQKNPMYQKERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQR 59
Query: 324 EMLRKEL--AQREIDRERQKAEWEMKERQA----EELKRRDEELMKK---HAEEMQLRLA 374
E + K + A+ +++ E + A E QA ++L RR EEL + H++EMQ R
Sbjct: 60 EQVEKNMKDAKDKLESEMEDA---YHEHQANLLRQDLMRRQEELRRMEELHSQEMQKRKE 116
Query: 375 QQ 376
Q
Sbjct: 117 MQ 118
>gi|398327|emb|CAA81127.1| poly(A)-mRNA binding protein [Anemia phyllitidis]
Length = 638
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 81/147 (55%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKAK--L 169
LY+G++ D++E+++ E+F G+ + + ++ M G+ ++Y + D ++A L
Sbjct: 28 LYVGDLDPDVSESELYEVFNQIGQVVSIRVCRDLMTKKSLGYAYVNYGTHQDASQALELL 87
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++KG+ ++I ++ + +I+ +KNL + N+ L F FG I V++
Sbjct: 88 NFTLVKGKPIRIMYSHRDPSIRKSGAANIFIKNLEKSIDNKALHDTFSAFGTILSCRVVM 147
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
D+ GNSK G V+F ++ +A A+ +
Sbjct: 148 DDAGNSKGYGFVQFEKEESAQIAIEKV 174
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 20/159 (12%)
Query: 105 NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYK 159
+ I+ + +++ N+ I + + F +G + + K +GF++ + +
Sbjct: 105 DPSIRKSGAANIFIKNLEKSIDNKALHDTFSAFGTILSCRVVMDDAGNSKGYGFVQFEKE 164
Query: 160 HNADKAKAKLDGHVLKGRSLKIRFAPI------NAA-------IKVKNLTSCVTNELLEL 206
+A A K++G ++ R + + AP + A + VKNL T+E L
Sbjct: 165 ESAQIAIEKVNGMLINDRQVSV--APFIRKQERDMASSKNFNNVYVKNLAEATTDEDLRK 222
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A+V+ D G SKC G V F AA A+
Sbjct: 223 VFAGFGPISSAVVMRDADGKSKCFGFVNFENVDDAANAV 261
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 71/172 (41%), Gaps = 30/172 (17%)
Query: 104 QNKDIKFANNCR-LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMD 157
Q +D+ + N +Y+ N+ T+ D+ ++F +G + K K FGF+ +
Sbjct: 193 QERDMASSKNFNNVYVKNLAEATTDEDLRKVFAGFGPISSAVVMRDADGKSKCFGFVNFE 252
Query: 158 YKHNADKAKAKLDGHVLK------GRS---------LKIRFAPIN---------AAIKVK 193
+A A L+G ++ GR+ LK +F + + +K
Sbjct: 253 NVDDAANAVENLNGKLINEKEWYVGRAQKKSEREAELKAKFEQVRKEKEEKFQGVNLYLK 312
Query: 194 NLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
N+ + +E L F VFG + V+ +G S G V F+ A QA+
Sbjct: 313 NIDDSIDDEKLRELFAVFGTVTSCKVMKSPQGQSMGSGFVTFSAPEEAMQAV 364
>gi|225557655|gb|EEH05941.1| polyadenylate-binding protein [Ajellomyces capsulatus G186AR]
gi|240278336|gb|EER41843.1| polyadenylate-binding protein [Ajellomyces capsulatus H143]
gi|325096361|gb|EGC49671.1| polyadenylate-binding protein [Ajellomyces capsulatus H88]
Length = 784
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
++ LY+G + +TE + ELF G+ + + ++ + G+ ++Y + AD +A
Sbjct: 53 HSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 112
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
L+ ++KG+ +I ++ + A++ +KNL + + N+ L F FG+I
Sbjct: 113 LEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSC 172
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA A++
Sbjct: 173 KVAQDEFGNSKGYGFVHYETAEAATNAIKHV 203
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 63/152 (41%), Gaps = 34/152 (22%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN------KEKMFGFIRMDYKHNADK 164
AN +Y+ N+ +++ + ELF+ YGE I+ K + FGF+ +A
Sbjct: 233 ANFTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFGFVNFVKHESAAA 292
Query: 165 AKAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSC 198
A +L+ KG+ L + ++ +N + VKNLT
Sbjct: 293 AVEELNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVN--LYVKNLTDD 350
Query: 199 VTNELLELAFGVFGDIERAIVIVDERGNSKCE 230
+ +E L F FG+I A V+ D G+ E
Sbjct: 351 IDDEKLRDLFISFGNITSARVMRDTAGDPGSE 382
>gi|212540254|ref|XP_002150282.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
gi|210067581|gb|EEA21673.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
Length = 748
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
++ LY+G + +TE + ELF G+ + + ++ + G+ ++Y + AD +A
Sbjct: 48 HSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 107
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
L+ ++KGR +I ++ + A++ +KNL + + N+ L F FG+I
Sbjct: 108 LEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSC 167
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA A++
Sbjct: 168 KVAQDEFGNSKGYGFVHYETAEAANNAIKHV 198
Score = 42.4 bits (98), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 58/146 (39%), Gaps = 33/146 (22%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKA 165
AN +Y+ NI ++T+ + ELF +G+ I+ K + FGF+ NA A
Sbjct: 228 ANFTNVYVKNIDPEVTDEEFRELFGKFGDITSATISRDDSGKSRGFGFVNYVDHENAQTA 287
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
L+ G+ L + ++ +N + VKNLT V
Sbjct: 288 VDDLNDKDFHGQKLYVGRAQKKHEREEELRRQYEAARLEKASKYQGVN--LYVKNLTDDV 345
Query: 200 TNELLELAFGVFGDIERAIVIVDERG 225
+E L F FG I A V+ D G
Sbjct: 346 DDEKLRELFSAFGTITSAKVMRDTVG 371
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 64/150 (42%), Gaps = 21/150 (14%)
Query: 116 LYLGNIGGDITENDIIELFKPYGE------TQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+++ N+ I + + F +G Q+ F N K +GF+ + A+ A +
Sbjct: 140 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHV 198
Query: 170 DGHVLKGRSLKI-----------RFAPINAA---IKVKNLTSCVTNELLELAFGVFGDIE 215
+G +L + + + +F + A + VKN+ VT+E FG FGDI
Sbjct: 199 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYVKNIDPEVTDEEFRELFGKFGDIT 258
Query: 216 RAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
A + D+ G S+ G V + A A+
Sbjct: 259 SATISRDDSGKSRGFGFVNYVDHENAQTAV 288
>gi|348509424|ref|XP_003442249.1| PREDICTED: ribonucleoprotein PTB-binding 1-like [Oreochromis
niloticus]
Length = 731
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 70/137 (51%), Gaps = 2/137 (1%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168
+F N ++ + N+ D++ ++ EL Y + + F++K K F+ + A A +
Sbjct: 89 EFYNRRKIIIKNLPSDVSNQEVHELLGSY-DLKYCFVDKYKGTAFVTLLNGEQAQSAIKE 147
Query: 169 LDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNS 227
HVL+ R + ++ P +A + + NL T + E FG++ER ++ G+S
Sbjct: 148 FHQHVLRDREISVQLQPTDALLCIANLPRAFTQQQFEELVRPFGNLERCFLVYSATSGHS 207
Query: 228 KCEGIVEFARKPAAAQA 244
K G VE+ +K +AA+A
Sbjct: 208 KGYGFVEYMKKDSAARA 224
>gi|395850910|ref|XP_003798015.1| PREDICTED: ribonucleoprotein PTB-binding 1 [Otolemur garnettii]
Length = 766
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 73/142 (51%), Gaps = 2/142 (1%)
Query: 104 QNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNAD 163
++ + +F N ++ + + GD+T ++ +L Y E + F++K K F+ + A+
Sbjct: 66 EHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDY-ELKYCFVDKYKGTAFVTLLNGEQAE 124
Query: 164 KAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE 223
A + L+ R L ++ P +A + V NL +T + E FG +ER ++ +
Sbjct: 125 AAISAFHQSHLRDRELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSK 184
Query: 224 R-GNSKCEGIVEFARKPAAAQA 244
R G+SK G E+ +K +AA+A
Sbjct: 185 RTGHSKGYGFAEYMKKDSAARA 206
>gi|392595814|gb|EIW85137.1| polyadenylate binding protein [Coniophora puteana RWD-64-598 SS2]
Length = 683
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 18/167 (10%)
Query: 94 PTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM--- 150
P+ +LPP I A + LY+G + +TE I E+F G + + ++ +
Sbjct: 29 PSYNLPP----QTSISSAPSASLYVGELDPTVTEAMIFEIFNMIGPVASIRVCRDAVTRR 84
Query: 151 -FGFIRMDYKHNAD--KAKAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCV 199
G+ ++Y + AD +A +L+ ++KGR +I ++ + A++ +KNL +
Sbjct: 85 SLGYAYVNYLNTADGERALEQLNYSLIKGRPCRIMWSQRDPALRKTGQGNIFIKNLDEQI 144
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALR 246
N+ L F FG++ V DE+G SK G V + AA A++
Sbjct: 145 DNKALHDTFVAFGNVLSCKVATDEQGRSKGYGFVHYETAEAAETAIK 191
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 64/159 (40%), Gaps = 29/159 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
LY+ N+ ++T+ + ELF YG + + K FGF+ + A A L
Sbjct: 228 LYIKNLDTEVTQEEFEELFNRYGSVTSAIVQVDDEGRSKGFGFVNYESHEEAQAAVDNLH 287
Query: 171 GHVLKGRSLKIRFAPINAA------------------------IKVKNLTSCVTNELLEL 206
LKG+ L + A A + VKNL V ++ L
Sbjct: 288 DTDLKGKKLYVTRAQKKAEREEELRRSYEQAKMEKLSKYQGVNLYVKNLEDDVDDDKLRA 347
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I V+ DE+G+SK G V F+ A +A+
Sbjct: 348 EFEPFGTITSCKVMSDEKGSSKGFGFVCFSSPDEATKAI 386
Score = 38.5 bits (88), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 59/139 (42%), Gaps = 19/139 (13%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + + F +G + + K +GF+ + A+ A ++
Sbjct: 135 IFIKNLDEQIDNKALHDTFVAFGNVLSCKVATDEQGRSKGYGFVHYETAEAAETAIKAVN 194
Query: 171 GHVLKGRSLKI-----------RFAPINAA---IKVKNLTSCVTNELLELAFGVFGDIER 216
G +L + + + + + A + +KNL + VT E E F +G +
Sbjct: 195 GMLLNDKKVYVGPHIPRKERQSKLDEMKAQFTNLYIKNLDTEVTQEEFEELFNRYGSVTS 254
Query: 217 AIVIVDERGNSKCEGIVEF 235
AIV VD+ G SK G V +
Sbjct: 255 AIVQVDDEGRSKGFGFVNY 273
>gi|189190886|ref|XP_001931782.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187973388|gb|EDU40887.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 704
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
N+ LY+G + +TE + ELF G+ + + ++ + G+ ++Y + D KA
Sbjct: 46 NSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKA 105
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
+L+ V+KG+ +I ++ + A++ +KNL + N+ L F FG+I
Sbjct: 106 LEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSC 165
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA A++
Sbjct: 166 KVAQDELGNSKGYGFVHYETAEAANNAIKHV 196
>gi|451854943|gb|EMD68235.1| hypothetical protein COCSADRAFT_270468 [Cochliobolus sativus
ND90Pr]
Length = 749
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
N+ LY+G + +TE + ELF G+ + + ++ + G+ ++Y + D KA
Sbjct: 46 NSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKA 105
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
+L+ V+KG+ +I ++ + A++ +KNL + N+ L F FG+I
Sbjct: 106 LEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSC 165
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA A++
Sbjct: 166 KVAQDELGNSKGYGFVHYETAEAANNAIKHV 196
>gi|407920118|gb|EKG13336.1| hypothetical protein MPH_09618 [Macrophomina phaseolina MS6]
Length = 768
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 14/149 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
N+ LY+G + +TE + ELF G+ + + ++ + G+ ++Y + D KA
Sbjct: 55 NSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSDDGEKA 114
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
+L+ ++KG+ +I ++ + A++ +KNL + N+ L F FG+I
Sbjct: 115 LEELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDTFAAFGNILSC 174
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALR 246
V DE GNSK G V + AA A++
Sbjct: 175 KVAQDENGNSKGYGFVHYETAEAANNAIK 203
>gi|330938161|ref|XP_003305701.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
gi|311317207|gb|EFQ86241.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
Length = 749
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
N+ LY+G + +TE + ELF G+ + + ++ + G+ ++Y + D KA
Sbjct: 46 NSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKA 105
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
+L+ V+KG+ +I ++ + A++ +KNL + N+ L F FG+I
Sbjct: 106 LEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSC 165
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA A++
Sbjct: 166 KVAQDELGNSKGYGFVHYETAEAANNAIKHV 196
>gi|70990636|ref|XP_750167.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|74669855|sp|Q4WK03.1|PABP_ASPFU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|66847799|gb|EAL88129.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|159130644|gb|EDP55757.1| polyadenylate-binding protein [Aspergillus fumigatus A1163]
Length = 753
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 84/176 (47%), Gaps = 20/176 (11%)
Query: 87 KIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN 146
++ A++ + PS Q ++ LY+G + +TE + ELF G+ + +
Sbjct: 31 EVTAVESASPSTTPSASQ------PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVC 84
Query: 147 KEKM----FGFIRMDYKHNAD--KAKAKLDGHVLKGRSLKIRFAPINAAIK--------V 192
++ + G+ ++Y + AD +A L+ ++KG+ +I ++ + A++ +
Sbjct: 85 RDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFI 144
Query: 193 KNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
KNL + + N+ L F FG+I V DE GNSK G V + AA A++
Sbjct: 145 KNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHV 200
Score = 42.4 bits (98), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 33/143 (23%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKA 165
AN +Y+ NI ++T+ + ++F+ +GE ++ K + FGF+ +A A
Sbjct: 230 ANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAA 289
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+++ +KG+ L + ++ +N + VKNLT V
Sbjct: 290 VDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVN--LYVKNLTDDV 347
Query: 200 TNELLELAFGVFGDIERAIVIVD 222
+E L F FG I A V+ D
Sbjct: 348 DDEKLRELFSPFGTITSAKVMRD 370
>gi|358394883|gb|EHK44276.1| hypothetical protein TRIATDRAFT_79372 [Trichoderma atroviride IMI
206040]
Length = 746
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
N+ LY+G + +TE + ELF G + + ++ + G+ ++Y D KA
Sbjct: 57 NSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKA 116
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
+L+ +KGR +I ++ + A++ +KNL + N+ L F FG+I
Sbjct: 117 LEELNYTPIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSC 176
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE G SK G V + AAAQA++
Sbjct: 177 KVAQDETGASKGYGFVHYETDEAAAQAIKHV 207
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKA 165
AN +Y+ NI D+T+N+ ELF+ YG+ + K + FGF+ A KA
Sbjct: 237 ANFTNVYVKNISPDVTDNEFRELFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHEAAYKA 296
Query: 166 KAKLDGHVLKGRSLKI 181
+L+G+ +G+ L +
Sbjct: 297 VDELNGNDFRGQELYV 312
>gi|332253299|ref|XP_003275783.1| PREDICTED: ribonucleoprotein PTB-binding 1 [Nomascus leucogenys]
Length = 756
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 79/161 (49%), Gaps = 9/161 (5%)
Query: 92 QGPTLDLPPSEPQ-------NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELF 144
+ P +LPP +P+ + + +F N ++ + + GD+T ++ +L Y E + F
Sbjct: 47 RAPEEELPPLDPEEIRKRLKHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDY-ELKYCF 105
Query: 145 INKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELL 204
++K K F+ + A+ A L+ R L ++ P +A + V NL +T +
Sbjct: 106 VDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQF 165
Query: 205 ELAFGVFGDIERAIVIVDER-GNSKCEGIVEFARKPAAAQA 244
E FG +ER ++ E G+SK G E+ +K +AA+A
Sbjct: 166 EELVRPFGSLERCFLVYSEHTGHSKGYGFAEYMKKDSAARA 206
>gi|326474523|gb|EGD98532.1| polyadenylate-binding protein [Trichophyton tonsurans CBS 112818]
Length = 676
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
++ LY+G + +TE + ELF G+ + + ++ + G+ ++Y + AD +A
Sbjct: 56 HSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 115
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
L+ ++KGR +I ++ + A++ +KNL + + N+ L F FG+I
Sbjct: 116 LEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSC 175
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA A++
Sbjct: 176 KVAQDEYGNSKGYGFVHYETAEAATNAIKHV 206
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 30/140 (21%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN------KEKMFGFIRMDYKHNADK 164
AN +Y+ N+ D+T+ + LF+ YGE ++ K + FGF+ A
Sbjct: 236 ANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASA 295
Query: 165 AKAKLDGHVLKGRSLKI-----------------RFAPINAAIK-------VKNLTSCVT 200
A L+ + LKG+ L + A I A K +KNL+ +
Sbjct: 296 AVEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDID 355
Query: 201 NELLELAFGVFGDIERAIVI 220
+E L F +G+I A V+
Sbjct: 356 DEKLRELFSSYGNITSAKVM 375
>gi|225678061|gb|EEH16345.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb03]
Length = 755
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
++ LY+G + +TE + ELF G+ + + ++ + G+ ++Y + AD +A
Sbjct: 52 HSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 111
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
L+ ++KG+ +I ++ + A++ +KNL + + N+ L F FG+I
Sbjct: 112 LEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSC 171
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA A++
Sbjct: 172 KVAQDEFGNSKGYGFVHYETAEAATNAIKHV 202
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 63/152 (41%), Gaps = 34/152 (22%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN------KEKMFGFIRMDYKHNADK 164
AN +Y+ N+ ++T + ELF+ YGE ++ K + FGF+ +A
Sbjct: 232 ANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAA 291
Query: 165 AKAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSC 198
A L+ KG+ L + ++ +N + VKNLT
Sbjct: 292 AVEDLNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVN--LYVKNLTDD 349
Query: 199 VTNELLELAFGVFGDIERAIVIVDERGNSKCE 230
+ +E L F FG+I A V+ D G++ E
Sbjct: 350 IDDEKLRDLFIGFGNITSARVMRDTIGDAGSE 381
>gi|226287551|gb|EEH43064.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb18]
Length = 761
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
++ LY+G + +TE + ELF G+ + + ++ + G+ ++Y + AD +A
Sbjct: 52 HSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 111
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
L+ ++KG+ +I ++ + A++ +KNL + + N+ L F FG+I
Sbjct: 112 LEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSC 171
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA A++
Sbjct: 172 KVAQDEFGNSKGYGFVHYETAEAATNAIKHV 202
Score = 38.5 bits (88), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 62/152 (40%), Gaps = 34/152 (22%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN------KEKMFGFIRMDYKHNADK 164
AN +Y+ N+ ++T + ELF+ YGE ++ K + FGF+ +A
Sbjct: 232 ANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAA 291
Query: 165 AKAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSC 198
A L+ KG+ L + ++ +N + VKNLT
Sbjct: 292 AVEDLNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVN--LYVKNLTDD 349
Query: 199 VTNELLELAFGVFGDIERAIVIVDERGNSKCE 230
+ +E L F FG+I A V+ D ++ E
Sbjct: 350 IDDEKLRDLFIGFGNITSARVMRDTISDAGSE 381
>gi|295674319|ref|XP_002797705.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280355|gb|EEH35921.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 822
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
++ LY+G + +TE + ELF G+ + + ++ + G+ ++Y + AD +A
Sbjct: 52 HSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 111
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
L+ ++KG+ +I ++ + A++ +KNL + + N+ L F FG+I
Sbjct: 112 LEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSC 171
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA A++
Sbjct: 172 KVAQDEFGNSKGYGFVHYETAEAATNAIKHV 202
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 63/152 (41%), Gaps = 34/152 (22%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN------KEKMFGFIRMDYKHNADK 164
AN +Y+ N+ ++T + ELF+ YGE ++ K + FGF+ +A
Sbjct: 232 ANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAA 291
Query: 165 AKAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSC 198
A L+ KG+ L + ++ +N + VKNLT
Sbjct: 292 AVEDLNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVN--LYVKNLTDD 349
Query: 199 VTNELLELAFGVFGDIERAIVIVDERGNSKCE 230
+ +E L F FG+I A V+ D G++ E
Sbjct: 350 IDDEKLRDLFIGFGNITSARVMRDTIGDAGSE 381
>gi|115390925|ref|XP_001212967.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
gi|121739603|sp|Q0CR95.1|PABP_ASPTN RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|114193891|gb|EAU35591.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
Length = 753
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
++ LY+G + +TE + ELF G+ + + ++ + G+ ++Y + AD +A
Sbjct: 46 HSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 105
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
L+ ++KG+ +I ++ + A++ +KNL + + N+ L F FG+I
Sbjct: 106 LEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSC 165
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA A++
Sbjct: 166 KVAQDEFGNSKGYGFVHYETAEAANNAIKHV 196
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 33/143 (23%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKA 165
AN +Y+ N+ +I+E + ++F+ +GE ++ K + FGF+ +A A
Sbjct: 226 ANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAA 285
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+++ +KG+ L + ++ +N + VKNLT +
Sbjct: 286 VDEMNDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVN--LYVKNLTDDI 343
Query: 200 TNELLELAFGVFGDIERAIVIVD 222
+E L F +G I A V+ D
Sbjct: 344 DDEKLREMFAPYGTITSAKVMRD 366
>gi|452843390|gb|EME45325.1| hypothetical protein DOTSEDRAFT_71152 [Dothistroma septosporum
NZE10]
Length = 785
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 74/151 (49%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKA 165
N+ LY+G + +TE + ELF G+ + + ++ + + ++ + ++ ++A
Sbjct: 54 NSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERA 113
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
+L+ ++KG+ +I ++ + A++ +KNL + N+ L F FG+I
Sbjct: 114 LEELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDTFAAFGNILSC 173
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA A++
Sbjct: 174 KVAQDEHGNSKGYGFVHYETAEAANSAIKSV 204
>gi|169622264|ref|XP_001804541.1| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
gi|187608896|sp|Q0U1G2.3|PABP_PHANO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|160704734|gb|EAT78222.2| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
Length = 744
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
N+ LY+G + +TE + ELF G+ + + ++ + G+ ++Y + D KA
Sbjct: 46 NSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKA 105
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
+L+ V+KG+ +I ++ + A++ +KNL + N+ L F FG+I
Sbjct: 106 LEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSC 165
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA A++
Sbjct: 166 KVAQDELGNSKGYGFVHYETAEAANNAIKHV 196
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 66/149 (44%), Gaps = 19/149 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKHNADKAKAKLD 170
+++ N+ I + + F +G + ++++ +GF+ + A+ A ++
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVN 197
Query: 171 GHVLKGRSLKI-----------RFAPINAA---IKVKNLTSCVTNELLELAFGVFGDIER 216
G +L + + + +F + A I VKN+ VT+E F GDI
Sbjct: 198 GMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVTDEDFRELFEKHGDITS 257
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQAL 245
A + D++G S+ G V + R AAA A+
Sbjct: 258 ASIARDDQGKSRGFGFVNYIRHEAAAVAV 286
>gi|448115215|ref|XP_004202770.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359383638|emb|CCE79554.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 626
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 69/148 (46%), Gaps = 14/148 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKA 165
+ LY+G + + E + E+F P G+ + + ++ + + ++ + +KA
Sbjct: 48 TSASLYVGELNPSVNEASLFEIFSPVGQVSSIRVCRDAVTKKSLGYAYVNFHKLEDGEKA 107
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
L+ ++ GR +I ++ + +++ +KNL + N+ L F FG I
Sbjct: 108 IDDLNYSLIDGRPCRIMWSQRDPSLRRNGEGNIFIKNLHPAIDNKALHDTFSAFGKILSC 167
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V DE+GNSKC G V + AA A+
Sbjct: 168 KVATDEQGNSKCFGFVHYETAEAARAAI 195
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 76/174 (43%), Gaps = 33/174 (18%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKA 165
AN +Y+ NI +E ++ LF+PYG+ L + K+ K FGF+ + A KA
Sbjct: 228 ANFTNVYVKNIDLGFSEEEMRNLFEPYGKITSLHLEKDAEGKSKGFGFVNFESHEAAVKA 287
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+L+ + G++L + ++ +N + VKNL +
Sbjct: 288 VEELNDKDINGQNLYVGRAQKKRERIEELKRQYETARLEKLSKYQGVN--LFVKNLDDSI 345
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCF 253
+ LE F FG I A V+VDE G SK G V F+ A +A+ + F
Sbjct: 346 DSVKLEEEFKPFGTITSARVMVDEHGKSKGFGFVCFSSPEEATKAITEMNQRMF 399
>gi|149020520|gb|EDL78325.1| RAVER1 homolog (human), isoform CRA_a [Rattus norvegicus]
Length = 257
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 9/159 (5%)
Query: 94 PTLDLPPSEPQ-------NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN 146
P +LPP +P+ + + +F N ++ + + GD+T ++ +L Y E + F++
Sbjct: 32 PEQELPPLDPEEIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDY-ELKYCFVD 90
Query: 147 KEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLEL 206
K K F+ + A+ A L+ R L ++ P +A + V NL +T E
Sbjct: 91 KYKGTAFVTLLNGEQAEAAINTFHQSRLRERELSVQLQPTDALLCVANLPPSLTQAQFEE 150
Query: 207 AFGVFGDIERAIVIVDER-GNSKCEGIVEFARKPAAAQA 244
FG +ER ++ ER G+SK G E+ +K +AA+A
Sbjct: 151 LVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARA 189
>gi|448112633|ref|XP_004202146.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359465135|emb|CCE88840.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 625
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 70/148 (47%), Gaps = 14/148 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKA 165
+ LY+G + + E + E+F P G+ + + ++ + + ++ + +KA
Sbjct: 48 TSASLYVGELNPSVNEALLFEIFSPVGQVSSIRVCRDAVTKKSLGYAYVNFHKLEDGEKA 107
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
+L+ ++ GR +I ++ + +++ +KNL + N+ L F FG I
Sbjct: 108 IEELNYSLIDGRPCRIMWSQRDPSLRRNGEGNIFIKNLHPAIDNKALHDTFSAFGKILSC 167
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V DE+GNSKC G V + AA A+
Sbjct: 168 KVATDEQGNSKCFGFVHYETAEAAKAAI 195
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 76/174 (43%), Gaps = 33/174 (18%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKA 165
AN +Y+ NI +E ++ +LF+PYG+ L + K+ K FGF+ + A KA
Sbjct: 228 ANFTNVYVKNIDLGFSEEEMRKLFEPYGKITSLHLEKDAEGKSKGFGFVNFESHEAAVKA 287
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+L+ + G+ L + ++ +N + VKNL +
Sbjct: 288 VEELNDKDINGQKLYVGRAQKKRERIEELKRQYEAARLEKLSKYQGVN--LFVKNLDDSI 345
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCF 253
+ LE F FG I A V+VDE G SK G V F+ A +A+ + F
Sbjct: 346 DSVKLEEEFKPFGTITSARVMVDEHGKSKGFGFVCFSSPEEATKAITEMNQRMF 399
>gi|302811197|ref|XP_002987288.1| hypothetical protein SELMODRAFT_269256 [Selaginella moellendorffii]
gi|302815025|ref|XP_002989195.1| hypothetical protein SELMODRAFT_269487 [Selaginella moellendorffii]
gi|300143095|gb|EFJ09789.1| hypothetical protein SELMODRAFT_269487 [Selaginella moellendorffii]
gi|300144923|gb|EFJ11603.1| hypothetical protein SELMODRAFT_269256 [Selaginella moellendorffii]
Length = 567
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 15/145 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
L++ N+ I + +LF PYG+ I N K GF++ D + A A K++
Sbjct: 105 LFVKNLDKSIDNKALHDLFSPYGKILSCKIALDVSNVSKGHGFVQFDTEDAAHTAIEKIN 164
Query: 171 GHVLKGRSLKI--------RFAPINA--AIKVKNLTSCVTNELLELAFGVFGDIERAIVI 220
G L + L + R P + + VKNL+ T+E L+ FGVFG I A+V+
Sbjct: 165 GTTLHDKQLFVGPFVRRQERDPPASKFNNVFVKNLSEITTDEDLQKLFGVFGPISSAVVM 224
Query: 221 VDERGNSKCEGIVEFARKPAAAQAL 245
+ G SKC G V F A +A+
Sbjct: 225 KEVDGKSKCFGFVNFENPEDAVKAV 249
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 77/164 (46%), Gaps = 21/164 (12%)
Query: 99 PPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFI 154
PP P FA+ LY+G++ + E I ++FK G + + ++ + G+
Sbjct: 7 PPRSP------FASTA-LYVGDLDPSVNEAQIFDIFKQIGNVMSVRLCRDMVTKRSLGYA 59
Query: 155 RMDYKHNADKAKA--KLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELL 204
++Y + D ++A +L+ + G+ ++I F+ + +I+ VKNL + N+ L
Sbjct: 60 YVNYNNTQDASRAIEELNFMPVNGKPVRIMFSYRDPSIRKSGSGNLFVKNLDKSIDNKAL 119
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
F +G I + +D SK G V+F + AA A+ +
Sbjct: 120 HDLFSPYGKILSCKIALDVSNVSKGHGFVQFDTEDAAHTAIEKI 163
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 35/167 (20%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNAD 163
KF N +++ N+ T+ D+ +LF +G + KE K FGF+ + +A
Sbjct: 190 KFNN---VFVKNLSEITTDEDLQKLFGVFGPISSAVVMKEVDGKSKCFGFVNFENPEDAV 246
Query: 164 KAKAKLDGHVLKGRSL---------------KIRF----------APINAAIKVKNLTSC 198
KA L G + + L K +F +P N + +KNL
Sbjct: 247 KAVEDLHGTTFQDKELYVSRAQKKNEREAELKAKFEHERKDTEDKSPTN--LYLKNLDDG 304
Query: 199 VTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ +E L+ F FG++ V+ D G+SK G V F+ AA +A+
Sbjct: 305 IDDEKLKDMFSAFGNVTSCKVMRDPLGHSKGSGFVAFSTSDAALRAV 351
>gi|119496945|ref|XP_001265244.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
gi|158512647|sp|A1D4K4.1|PABP_NEOFI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119413406|gb|EAW23347.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
Length = 751
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 84/176 (47%), Gaps = 20/176 (11%)
Query: 87 KIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN 146
++ A++ + PS Q ++ LY+G + +TE + ELF G+ + +
Sbjct: 31 EVTAVESASPSATPSANQ------PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVC 84
Query: 147 KEKM----FGFIRMDYKHNAD--KAKAKLDGHVLKGRSLKIRFAPINAAIK--------V 192
++ + G+ ++Y + AD +A L+ ++KG+ +I ++ + A++ +
Sbjct: 85 RDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFI 144
Query: 193 KNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
KNL + + N+ L F FG+I V DE GNSK G V + AA A++
Sbjct: 145 KNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHV 200
Score = 42.4 bits (98), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 33/143 (23%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKA 165
AN +Y+ NI ++T+ + ++F+ +GE ++ K + FGF+ +A A
Sbjct: 230 ANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAA 289
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+++ +KG+ L + ++ +N + VKNLT V
Sbjct: 290 VDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVN--LYVKNLTDDV 347
Query: 200 TNELLELAFGVFGDIERAIVIVD 222
+E L F FG I A V+ D
Sbjct: 348 DDEKLRELFSPFGTITSAKVMRD 370
>gi|348550172|ref|XP_003460906.1| PREDICTED: ribonucleoprotein PTB-binding 1-like [Cavia porcellus]
Length = 757
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 71/142 (50%), Gaps = 2/142 (1%)
Query: 104 QNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNAD 163
++ + +F N ++ + + GD+T ++ +L Y E + F++K K F+ + A+
Sbjct: 66 EHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDY-ELKYCFVDKYKGTAFVTLLNGEQAE 124
Query: 164 KAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE 223
A + L+ R L ++ P +A + V NL +T E FG +ER ++ E
Sbjct: 125 AAISAFHQSRLRDRELSVQLQPTDALLCVANLPPSLTQAQFEELVRPFGSLERCFLVYSE 184
Query: 224 R-GNSKCEGIVEFARKPAAAQA 244
G+SK G E+ +K +AA+A
Sbjct: 185 HTGHSKGYGFAEYMKKDSAARA 206
>gi|351700419|gb|EHB03338.1| Ribonucleoprotein PTB-binding 1 [Heterocephalus glaber]
Length = 756
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 75/156 (48%), Gaps = 9/156 (5%)
Query: 97 DLPPSEPQ-------NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEK 149
+LPP +P+ + + +F N ++ + + GD+T ++ +L Y E + F++K K
Sbjct: 51 ELPPLDPEEIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDY-ELKYCFVDKYK 109
Query: 150 MFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFG 209
F+ + A+ A L+ R L ++ P +A + V NL +T E
Sbjct: 110 GTAFVTLLNGEQAEAAINAFHQSHLRDRELSVQLQPTDALLCVANLPPSLTQAQFEELVR 169
Query: 210 VFGDIERAIVIVDER-GNSKCEGIVEFARKPAAAQA 244
FG +ER ++ E G SK G E+ +K +AA+A
Sbjct: 170 PFGSLERCFLVYSEHTGQSKGYGFAEYMKKDSAARA 205
>gi|26333527|dbj|BAC30481.1| unnamed protein product [Mus musculus]
gi|148693210|gb|EDL25157.1| mCG14049, isoform CRA_a [Mus musculus]
Length = 270
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 79/161 (49%), Gaps = 9/161 (5%)
Query: 92 QGPTLDLPPSEPQ-------NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELF 144
+ P +LPP +P+ + + +F N ++ + + GD+T ++ +L Y E + F
Sbjct: 30 RAPEQELPPLDPEEIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDY-ELKYCF 88
Query: 145 INKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELL 204
++K K F+ + A+ A L+ R L ++ P +A + V NL +T
Sbjct: 89 VDKYKGTAFVTLLNGEQAEAAINTFHQSRLRERELSVQLQPTDALLCVANLPPSLTQAQF 148
Query: 205 ELAFGVFGDIERAIVIVDER-GNSKCEGIVEFARKPAAAQA 244
E FG +ER ++ ER G+SK G E+ +K +AA+A
Sbjct: 149 EELVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARA 189
>gi|308486599|ref|XP_003105496.1| CRE-PAB-2 protein [Caenorhabditis remanei]
gi|308255462|gb|EFO99414.1| CRE-PAB-2 protein [Caenorhabditis remanei]
Length = 730
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 85/173 (49%), Gaps = 20/173 (11%)
Query: 92 QGPTLDL--PPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEK 149
QGP ++ PP+ P N A+ LY+G++ D+TE+ + E F G + + ++
Sbjct: 35 QGPPANMGYPPNAP-NATYSMAS---LYIGDLHPDVTESMLFEKFSMAGPVLSIRVCRDN 90
Query: 150 M----FGFIRMDYKHNADKAKA--KLDGHVLKGRSLKIRFAPINAA--------IKVKNL 195
G+ ++++ AD +A ++ V+ GR ++I ++ + A I +KNL
Sbjct: 91 TSRLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNL 150
Query: 196 TSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
+ N+ + F +FG+I V DE GNSK G V F + +A A+ +
Sbjct: 151 DRVIDNKSIYDTFSLFGNILSCKVATDEEGNSKGYGFVHFETEASALTAIEKV 203
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 70/171 (40%), Gaps = 38/171 (22%)
Query: 108 IKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNA 162
+K+ N +++ N G + E + E+F YGE + K K FGF+ A
Sbjct: 233 LKYTN---VFIKNFGDHLDEKKLTEMFSKYGEITSAVVMTDNSGKPKGFGFVAFVDPDAA 289
Query: 163 DKAKAKLDGHVLKGRSLKI----------------------------RFAPINAAIKVKN 194
KA L+ L+G LK+ R+ +N + VKN
Sbjct: 290 IKAVDTLNESTLEGTDLKLSVCRAQKKSERTAELKRKYEALKQERVQRYQGVN--LYVKN 347
Query: 195 LTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ +T++ L F FG I A V+VDE G SK G V F + A A+
Sbjct: 348 IEEEMTDDGLREHFANFGSITSAKVMVDENGRSKGFGFVCFEKPEEATAAV 398
>gi|400597582|gb|EJP65312.1| polyadenylate-binding protein [Beauveria bassiana ARSEF 2860]
Length = 736
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 73/151 (48%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
N+ LY+G + +TE + ELF G + + ++ + G+ ++Y D KA
Sbjct: 53 NSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKA 112
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
+L+ ++KGR +I ++ + A++ +KNL + N+ L F FG+I
Sbjct: 113 LEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSC 172
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE G+SK G V + AA QA++
Sbjct: 173 KVAQDENGSSKGYGFVHYETDEAAQQAIKHV 203
>gi|126137970|ref|XP_001385508.1| Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
[Scheffersomyces stipitis CBS 6054]
gi|158513407|sp|A3LXL0.1|PABP_PICST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|126092786|gb|ABN67479.1| Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
[Scheffersomyces stipitis CBS 6054]
Length = 632
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 78/175 (44%), Gaps = 33/175 (18%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKA 165
AN +Y+ NI + +E D+ +LF PYG +++ K+ K FGF+ + A KA
Sbjct: 230 ANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKA 289
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+L+ + G+ + + ++ +N + +KNL +
Sbjct: 290 VEELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVN--LFIKNLDDTI 347
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFF 254
+E LE F FG I A V+VDE G SK G V F+ A +A+ + FF
Sbjct: 348 DSEKLEEEFKPFGTITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMFF 402
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 14/138 (10%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNAD--KA 165
+ LY+G + + E + E+F P G+ + + ++ K G+ ++Y D KA
Sbjct: 50 STASLYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKA 109
Query: 166 KAKLDGHVLKGRSLKIRFAPINAA--------IKVKNLTSCVTNELLELAFGVFGDIERA 217
+L+ ++GR +I ++ + + I +KNL + N+ L F FG I
Sbjct: 110 IEELNYSPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKILSC 169
Query: 218 IVIVDERGNSKCEGIVEF 235
V D+ G SKC G V +
Sbjct: 170 KVATDDMGQSKCFGFVHY 187
>gi|354475141|ref|XP_003499788.1| PREDICTED: ribonucleoprotein PTB-binding 1-like [Cricetulus
griseus]
Length = 742
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 71/142 (50%), Gaps = 2/142 (1%)
Query: 104 QNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNAD 163
++ + +F N ++ + + GD+T ++ +L Y E + F++K K F+ + A+
Sbjct: 49 EHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDY-ELKYCFVDKYKGTAFVTLLNGEQAE 107
Query: 164 KAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE 223
A L+ R L ++ P +A + V NL +T E FG +ER ++ E
Sbjct: 108 AAINAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQAQFEELVRPFGSLERCFLVYSE 167
Query: 224 R-GNSKCEGIVEFARKPAAAQA 244
R G+SK G E+ +K +AA+A
Sbjct: 168 RTGHSKGYGFAEYMKKDSAARA 189
>gi|255577189|ref|XP_002529477.1| RNA recognition motif-containing protein, putative [Ricinus
communis]
gi|223531035|gb|EEF32887.1| RNA recognition motif-containing protein, putative [Ricinus
communis]
Length = 902
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 12/141 (8%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLD 170
A + L++GN+ D+T++D+++LF YG + + + F+ + +A AK L
Sbjct: 19 APSNNLWVGNLAPDVTDSDLMDLFAKYGALDSVTTYSSRSYAFLYFKHVEDAAAAKDALQ 78
Query: 171 GHVLKGRSLKIRFAPINAAIKVKNL-----TSCVTNELLELAFGVFGDIERAIVIVDERG 225
G +L+G +KI FA A KNL + V+ E LE F FG IE + D
Sbjct: 79 GTLLRGNPVKIEFA--RPAKPSKNLWVGGISPAVSKEQLEEEFLKFGKIEEFKFLRD--- 133
Query: 226 NSKCEGIVEFARKPAAAQALR 246
+ +E+ + A +A+R
Sbjct: 134 --RNTAFIEYVKLEDALEAMR 152
>gi|344240098|gb|EGV96201.1| Ribonucleoprotein PTB-binding 1 [Cricetulus griseus]
Length = 765
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 71/142 (50%), Gaps = 2/142 (1%)
Query: 104 QNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNAD 163
++ + +F N ++ + + GD+T ++ +L Y E + F++K K F+ + A+
Sbjct: 49 EHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDY-ELKYCFVDKYKGTAFVTLLNGEQAE 107
Query: 164 KAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE 223
A L+ R L ++ P +A + V NL +T E FG +ER ++ E
Sbjct: 108 AAINAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQAQFEELVRPFGSLERCFLVYSE 167
Query: 224 R-GNSKCEGIVEFARKPAAAQA 244
R G+SK G E+ +K +AA+A
Sbjct: 168 RTGHSKGYGFAEYMKKDSAARA 189
>gi|426396432|ref|XP_004064447.1| PREDICTED: uncharacterized protein LOC101125114 [Gorilla gorilla
gorilla]
Length = 533
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 80/155 (51%), Gaps = 18/155 (11%)
Query: 105 NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKH 160
N D + A+ LY+G++ ++TE + E F P G + I ++K+ G+ ++Y+
Sbjct: 329 NPDFQMAS---LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQ 385
Query: 161 NADKAKA--KLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGV 210
D +A L+ V+KGR ++I ++ + +++ +KNL + N+ L F
Sbjct: 386 PVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSA 445
Query: 211 FGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
FG+I V DE+G K G V F ++ +A +A+
Sbjct: 446 FGNILSCKVACDEKG-PKGYGFVHFQKQESAERAI 479
>gi|281350417|gb|EFB26001.1| hypothetical protein PANDA_001865 [Ailuropoda melanoleuca]
Length = 640
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 19/150 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + I ++K+ G+ ++Y+ D +A L
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK------------VKNLTSCVTNELLELAFGVFGDIERA 217
+ V+KGR ++I ++ + +++ +KNL + N+ L F FG+I
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVGGGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 132
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRR 247
V+ DE G SK G V F + AA +A+ +
Sbjct: 133 KVVCDENG-SKGYGFVHFETQEAAERAIEK 161
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + + A++A K++G
Sbjct: 105 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 164
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + +E L+ FG FG
Sbjct: 165 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 224
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 225 KVMTDESGKSKGFGFVSFERHEDAQKAV 252
Score = 41.6 bits (96), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + +LF +G + + K K FGF+ + +A KA +++
Sbjct: 197 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 256
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+ + + R+ +N + VKNL + +E L
Sbjct: 257 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERL 314
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 315 RKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 354
>gi|47222165|emb|CAG11591.1| unnamed protein product [Tetraodon nigroviridis]
Length = 374
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 78/156 (50%), Gaps = 9/156 (5%)
Query: 97 DLPPSEPQNKDIKFA-------NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEK 149
DLP EP+ + + A N ++ + N+ D T ++ E+ K Y E + F+++ K
Sbjct: 53 DLPDLEPEEIERRLAKTRQELSNRRKILIKNLPPDTTNQEVHEILKEY-ELKYCFVDRNK 111
Query: 150 MFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFG 209
F+ + A A L ++GR + + P ++ + + NL T + LE
Sbjct: 112 GTAFVTLLNGDQAQDAIRSLHHSTVRGRLINVALQPTDSLLCLTNLPHTFTAQELEELVR 171
Query: 210 VFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQA 244
+G+IER+ ++ E G+SK G VE+ +K +A++A
Sbjct: 172 AYGNIERSFLVYSELTGHSKGYGFVEYMKKDSASRA 207
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKL 169
L L N+ T ++ EL + YG + F+ ++ +GF+ K +A +A+++L
Sbjct: 152 LCLTNLPHTFTAQELEELVRAYGNIERSFLVYSELTGHSKGYGFVEYMKKDSASRARSEL 211
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTS---CVTNELLELA 207
G L RSL +++ +N + +NL S C++ L+L
Sbjct: 212 LGRPLGDRSLMVQWMDVNQLSQEENLHSRCVCISQLPLDLC 252
>gi|222629794|gb|EEE61926.1| hypothetical protein OsJ_16667 [Oryza sativa Japonica Group]
Length = 1011
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 23/170 (13%)
Query: 99 PPSEPQNK-DIKFANNCRLYLGNIGGDITENDIIELFKPYGE------TQELFINKEKMF 151
PPS PQ+ +K +N LY+GN+ + + +IELF P+G+ + F + +
Sbjct: 280 PPSFPQDGGKLKEVDNTNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGY 339
Query: 152 GFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA--PIN-------------AAIKVKNLT 196
GF++ A +A +++G +++GR+L++R A P + A + V NL+
Sbjct: 340 GFVKYSDPRCASEAIKRMNGRLVEGRALEVRVAGFPSSEDNSQQPSKETDMAKLYVCNLS 399
Query: 197 SCVTNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQAL 245
+ + L F FG++ A V D G SK G V+++ AA+A+
Sbjct: 400 LSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAV 449
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 78/165 (47%), Gaps = 28/165 (16%)
Query: 106 KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKA 165
K+I AN LY+G + +TE+ I+LF+P+G + + + + +G +R D A A
Sbjct: 684 KEIDMAN---LYVGRVPSSLTEDQFIDLFRPFGRVVQARMFRFQRYGMVRFDNPSCAAAA 740
Query: 166 KAKLDGHVLKGRSLKIRFAPI----NAA--------------------IKVKNLTSCVTN 201
LDG+ + G L +R A + NAA + V +L S V N
Sbjct: 741 IDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDMTNLYVSHLPSYVNN 800
Query: 202 ELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQAL 245
E L F G I +A V+V+ G SK G V+FA +AA AL
Sbjct: 801 ERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVAL 845
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 42/172 (24%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAK 168
+LY+ N+ + + +I LF P+GE + K+ K +GF++ H+A +A
Sbjct: 392 KLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIH 451
Query: 169 LDGHVLKGRSLKIRFAPI-----NAAIK----------------------------VKNL 195
L+G ++ GR +++R + I N+A++ V N+
Sbjct: 452 LNGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNM 511
Query: 196 TSCV-TNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQAL 245
S + T +L+EL F FG I A V+ D + ++K G ++F +A +A+
Sbjct: 512 PSSIDTKKLVEL-FLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAI 562
Score = 45.1 bits (105), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 72/152 (47%), Gaps = 26/152 (17%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDG 171
N RLY+ N+ +T + ++ LF P+G+ ++ +N E + + +A KA +DG
Sbjct: 598 NKSRLYITNLPRSMTADKMVNLFAPFGQITKVLMNLE--YSLVWYADAPSATKAVQHMDG 655
Query: 172 HVLKGRSLKIR---FAPINAA---------IKVKNL------TSCVTNELLELAFGVFGD 213
++++G+ L ++ NA+ I + NL +S ++ ++L F FG
Sbjct: 656 YMVEGKRLVVKRSELCTTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDL-FRPFGR 714
Query: 214 IERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ +A + +R G+V F AA A+
Sbjct: 715 VVQARMFRFQR-----YGMVRFDNPSCAAAAI 741
>gi|90399074|emb|CAJ86296.1| H0124B04.13 [Oryza sativa Indica Group]
Length = 913
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 23/170 (13%)
Query: 99 PPSEPQNK-DIKFANNCRLYLGNIGGDITENDIIELFKPYGE------TQELFINKEKMF 151
PPS PQ+ +K +N LY+GN+ + + +IELF P+G+ + F + +
Sbjct: 193 PPSFPQDGGKLKEVDNTNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGY 252
Query: 152 GFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA--PIN-------------AAIKVKNLT 196
GF++ A +A +++G +++GR+L++R A P + A + V NL+
Sbjct: 253 GFVKYSDPRCASEAIKRMNGRLVEGRALEVRVAGFPSSEDNSQQPSKETDMAKLYVCNLS 312
Query: 197 SCVTNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQAL 245
+ + L F FG++ A V D G SK G V+++ AA+A+
Sbjct: 313 LSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAV 362
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 78/165 (47%), Gaps = 28/165 (16%)
Query: 106 KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKA 165
K+I AN LY+G + +TE+ I+LF+P+G + + + + +G +R D A A
Sbjct: 586 KEIDMAN---LYVGRVPSSLTEDQFIDLFRPFGRVVQARMFRFQRYGMVRFDNPSCAAAA 642
Query: 166 KAKLDGHVLKGRSLKIRFAPI----NAA--------------------IKVKNLTSCVTN 201
LDG+ + G L +R A + NAA + V +L S V N
Sbjct: 643 IDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDMTNLYVSHLPSYVNN 702
Query: 202 ELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQAL 245
E L F G I +A V+V+ G SK G V+FA +AA AL
Sbjct: 703 ERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVAL 747
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 80/161 (49%), Gaps = 31/161 (19%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAK 168
+LY+ N+ + + +I LF P+GE + K+ K +GF++ H+A +A
Sbjct: 305 KLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIH 364
Query: 169 LDGHVLKGRSLKIRFAPI-----NAAIK-----------------VKNLTSCV-TNELLE 205
L+G ++ GR +++R + I N+A++ V N+ S + T +L+E
Sbjct: 365 LNGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVE 424
Query: 206 LAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQAL 245
L F FG I A V+ D + ++K G ++F +A +A+
Sbjct: 425 L-FLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAI 464
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 72/152 (47%), Gaps = 26/152 (17%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDG 171
N RLY+ N+ +T + ++ LF P+G+ ++ +N E + + +A KA +DG
Sbjct: 500 NKSRLYITNLPRSMTADKMVNLFAPFGQITKVLMNLE--YSLVWYADAPSAIKAVQHMDG 557
Query: 172 HVLKGRSLKIR---FAPINAA---------IKVKNL------TSCVTNELLELAFGVFGD 213
++++G+ L ++ NA+ I + NL +S ++ ++L F FG
Sbjct: 558 YMVEGKRLVVKRSELCTTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDL-FRPFGR 616
Query: 214 IERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ +A + +R G+V F AA A+
Sbjct: 617 VVQARMFRFQR-----YGMVRFDNPSCAAAAI 643
>gi|218195846|gb|EEC78273.1| hypothetical protein OsI_17967 [Oryza sativa Indica Group]
Length = 1001
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 23/170 (13%)
Query: 99 PPSEPQNK-DIKFANNCRLYLGNIGGDITENDIIELFKPYGE------TQELFINKEKMF 151
PPS PQ+ +K +N LY+GN+ + + +IELF P+G+ + F + +
Sbjct: 281 PPSFPQDGGKLKEVDNTNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGY 340
Query: 152 GFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA--PIN-------------AAIKVKNLT 196
GF++ A +A +++G +++GR+L++R A P + A + V NL+
Sbjct: 341 GFVKYSDPRCASEAIKRMNGRLVEGRALEVRVAGFPSSEDNSQQPSKETDMAKLYVCNLS 400
Query: 197 SCVTNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQAL 245
+ + L F FG++ A V D G SK G V+++ AA+A+
Sbjct: 401 LSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAV 450
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 78/165 (47%), Gaps = 28/165 (16%)
Query: 106 KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKA 165
K+I AN LY+G + +TE+ I+LF+P+G + + + + +G +R D A A
Sbjct: 674 KEIDMAN---LYVGRVPSSLTEDQFIDLFRPFGRVVQARMFRFQRYGMVRFDNPSCAAAA 730
Query: 166 KAKLDGHVLKGRSLKIRFAPI----NAA--------------------IKVKNLTSCVTN 201
LDG+ + G L +R A + NAA + V +L S V N
Sbjct: 731 IDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDMTNLYVSHLPSYVNN 790
Query: 202 ELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQAL 245
E L F G I +A V+V+ G SK G V+FA +AA AL
Sbjct: 791 ERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVAL 835
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 80/161 (49%), Gaps = 31/161 (19%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAK 168
+LY+ N+ + + +I LF P+GE + K+ K +GF++ H+A +A
Sbjct: 393 KLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIH 452
Query: 169 LDGHVLKGRSLKIRFAPI-----NAAIK-----------------VKNLTSCV-TNELLE 205
L+G ++ GR +++R + I N+A++ V N+ S + T +L+E
Sbjct: 453 LNGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVE 512
Query: 206 LAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQAL 245
L F FG I A V+ D + ++K G ++F +A +A+
Sbjct: 513 L-FLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAI 552
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 72/152 (47%), Gaps = 26/152 (17%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDG 171
N RLY+ N+ +T + ++ LF P+G+ ++ +N E + + +A KA +DG
Sbjct: 588 NKSRLYITNLPRSMTADKMVNLFAPFGQITKVLMNLE--YSLVWYADAPSAIKAVQHMDG 645
Query: 172 HVLKGRSLKIR---FAPINAA---------IKVKNL------TSCVTNELLELAFGVFGD 213
++++G+ L ++ NA+ I + NL +S ++ ++L F FG
Sbjct: 646 YMVEGKRLVVKRSELCTTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDL-FRPFGR 704
Query: 214 IERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ +A + +R G+V F AA A+
Sbjct: 705 VVQARMFRFQR-----YGMVRFDNPSCAAAAI 731
>gi|255572313|ref|XP_002527095.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223533518|gb|EEF35258.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 657
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 73/150 (48%), Gaps = 17/150 (11%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
+++ N+ + + E F +G + + K +GF++ + + +A++A + LD
Sbjct: 135 VFIKNLDSTLDNKLLHETFAAFGTVLSCKVAVDSNGQSKGYGFVQFENEESAERAISFLD 194
Query: 171 GHVLKGRSLKIRF------------APINAAIKVKNLTSCVTNELLELAFGVFGDIERAI 218
G L + + + F +P + VKNL+ +TNE LE FGV+G I A+
Sbjct: 195 GMCLNDKQVYVGFFVRQQERTRTNGSPKFTNVYVKNLSETITNEDLEKVFGVYGTITSAL 254
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V+ D+ G S+ G V F +AA A+ +
Sbjct: 255 VMKDQTGKSRGFGFVNFQDPDSAAAAVEKL 284
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 15/159 (9%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNA 162
+FAN LY+G++ ++ E + +LF + + + +++ +G++ +A
Sbjct: 41 QFAN-LSLYVGDLEQNVNEEQLYDLFSQIAQVVSVRVCRDQTKRSSLGYGYVNFSNPQDA 99
Query: 163 DKAKAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDI 214
A L+ L G+ ++I F+ + +I+ +KNL S + N+LL F FG +
Sbjct: 100 ANAMKALNFTPLNGKPIRIMFSHRDPSIRKSGYGNVFIKNLDSTLDNKLLHETFAAFGTV 159
Query: 215 ERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCF 253
V VD G SK G V+F + +A +A+ C
Sbjct: 160 LSCKVAVDSNGQSKGYGFVQFENEESAERAISFLDGMCL 198
>gi|410921966|ref|XP_003974454.1| PREDICTED: ribonucleoprotein PTB-binding 2-like [Takifugu rubripes]
Length = 872
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 77/156 (49%), Gaps = 9/156 (5%)
Query: 97 DLPPSEPQNKDIKFA-------NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEK 149
DLP EP+ + + A N ++ + N+ D T ++ E+ K Y E + F+++ K
Sbjct: 53 DLPDLEPEEIERRLAKTRQELSNRRKILIKNLPPDTTNQEVHEILKEY-ELKYCFVDRNK 111
Query: 150 MFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFG 209
F+ + A A L ++GR + + P ++ + + NL T + E
Sbjct: 112 GTAFVTLLNGDQAQDAIRSLHHSTVRGRLINVALQPTDSLLCLTNLPHTFTAQEFEELVR 171
Query: 210 VFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQA 244
+G+IER+ ++ E G+SK G VE+ +K +A++A
Sbjct: 172 AYGNIERSFLVYSELTGHSKGYGFVEYMKKDSASRA 207
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 17/137 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKL 169
L L N+ T + EL + YG + F+ ++ +GF+ K +A +A+++L
Sbjct: 152 LCLTNLPHTFTAQEFEELVRAYGNIERSFLVYSELTGHSKGYGFVEYMKKDSASRARSEL 211
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTS---CVTNELLELA-----FGVFGDIERAI--- 218
G L RSL +++ +N + +NL S C++ L+L +F + + +
Sbjct: 212 LGRPLGDRSLMVQWMDVNQLSQEENLHSKCLCISRLPLDLCDSEELTQLFSETYKPVFCQ 271
Query: 219 VIVDERGNSKCEGIVEF 235
+ DE + G+VE+
Sbjct: 272 LAQDEGSPVRGFGVVEY 288
>gi|432099554|gb|ELK28695.1| Ribonucleoprotein PTB-binding 1 [Myotis davidii]
Length = 724
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 71/142 (50%), Gaps = 12/142 (8%)
Query: 104 QNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNAD 163
++ + +F N ++ + + GD+T ++ +L Y E + F++K YK A+
Sbjct: 66 EHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDY-ELKYCFVDK----------YKGTAE 114
Query: 164 KAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE 223
A + L+ R L ++ P +A + V NL +T + E FG +ER ++ E
Sbjct: 115 AAISTFHQSCLRERELSVQLQPADALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSE 174
Query: 224 R-GNSKCEGIVEFARKPAAAQA 244
R G+SK G E+ +K +AA+A
Sbjct: 175 RTGHSKGYGFAEYMKKDSAARA 196
>gi|400261126|pdb|3VF0|B Chain B, Raver1 In Complex With Metavinculin L954 Deletion Mutant
Length = 285
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 2/137 (1%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168
+F N ++ + + GD+T ++ +L Y E + F++K K F+ + A+ A
Sbjct: 18 QFRNRRKILIRGLPGDVTNQEVHDLLSDY-ELKYCFVDKYKGTAFVTLLNGEQAEAAINA 76
Query: 169 LDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDER-GNS 227
L+ R L ++ P +A + V NL +T + E FG +ER ++ ER G S
Sbjct: 77 FHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQS 136
Query: 228 KCEGIVEFARKPAAAQA 244
K G E+ +K +AA+A
Sbjct: 137 KGYGFAEYMKKDSAARA 153
>gi|395754119|ref|XP_002831853.2| PREDICTED: uncharacterized protein LOC100437512 [Pongo abelii]
Length = 528
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 79/155 (50%), Gaps = 18/155 (11%)
Query: 105 NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKH 160
N D A+ LY+G++ ++TE + E F P G + I ++K+ G+ ++Y+
Sbjct: 324 NPDFPMAS---LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQ 380
Query: 161 NADKAKA--KLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGV 210
D +A L+ V+KGR ++I ++ + +++ +KNL + N+ L F
Sbjct: 381 PVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSA 440
Query: 211 FGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
FG+I V DE+G K G V F ++ +A +A+
Sbjct: 441 FGNILSCKVACDEKG-PKGYGFVHFQKQESAERAI 474
>gi|255080002|ref|XP_002503581.1| predicted protein [Micromonas sp. RCC299]
gi|226518848|gb|ACO64839.1| predicted protein [Micromonas sp. RCC299]
Length = 597
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 77/147 (52%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY G++ + TE + ELF G + + ++ + G+ ++++ AD A+A L
Sbjct: 22 LYCGDLDSNCTEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFQQGADAARAIDVL 81
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ +V+ G+ ++I ++ + A++ +KNL + N+ L F FG+I A V
Sbjct: 82 NFNVVNGKPIRIMYSQRDPALRKSGVGNIFIKNLDKEIDNKALYDTFSQFGNIVSAKVAA 141
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
D +G SK G V+FA + AA QA+ +
Sbjct: 142 DGQGVSKGYGFVQFAEQEAAQQAIDKV 168
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 30/160 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLD 170
+Y+ N+ + E+ + E+F G+ + I K+ K FGF+ + A +A KLD
Sbjct: 199 VYVKNLHESVDEDKLKEVFGAVGKLTSVVIMKDGEGKSKGFGFVCFEESEAASEAVEKLD 258
Query: 171 GH---------VLKGRS-------LKIRFAP---------INAAIKVKNLTSCVTNELLE 205
G+ V + + LK +F A + +KNL V + L
Sbjct: 259 GYDKIEDKAWVVCRAQKKAEREAELKAKFDAERRERLEKMAGANLYIKNLEDTVDDAKLR 318
Query: 206 LAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I V+ D G S+ V F+ A +A+
Sbjct: 319 ELFAEFGTITSCRVMRDASGASRGSAFVAFSSADEATRAV 358
Score = 39.3 bits (90), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 64/149 (42%), Gaps = 19/149 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLD 170
+++ N+ +I + + F +G + + K +GF++ + A +A K++
Sbjct: 110 IFIKNLDKEIDNKALYDTFSQFGNIVSAKVAADGQGVSKGYGFVQFAEQEAAQQAIDKVN 169
Query: 171 GHVLKGRSLKIRFAPIN------------AAIKVKNLTSCVTNELLELAFGVFGDIERAI 218
G +L + ++ P + VKNL V + L+ FG G + +
Sbjct: 170 GMLLNDK--QVYVGPFQRRGERGGGPTTFNNVYVKNLHESVDEDKLKEVFGAVGKLTSVV 227
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALRR 247
++ D G SK G V F AA++A+ +
Sbjct: 228 IMKDGEGKSKGFGFVCFEESEAASEAVEK 256
>gi|358346231|ref|XP_003637173.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355503108|gb|AES84311.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 622
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 72/160 (45%), Gaps = 16/160 (10%)
Query: 102 EPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRM 156
+P + FAN L++ N+ I + E F +G + + K GF++
Sbjct: 104 DPLIRKTGFAN---LFIKNLETSIDNKALHETFSVFGNVLSCKVAMDSNGHSKGHGFVQF 160
Query: 157 DYKHNADKAKAKLDGHVLKGRSLKI--------RFAPINAAIKVKNLTSCVTNELLELAF 208
D +A A KLDG ++ + + + R +P + VKNL+ TNE L+ F
Sbjct: 161 DNDQSAKNAIEKLDGRLMNDKKVYVGYFVRCQERSSPKFTNVYVKNLSESYTNEDLKQLF 220
Query: 209 GVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
FG I ++ DE GNSK G V F +AA A+ +
Sbjct: 221 NTFGVITSVKIMKDENGNSKRFGFVNFQSSDSAATAVEKL 260
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 72/150 (48%), Gaps = 14/150 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAK 166
N LY+G++ G++ + + +LF + + +++M +G++ +A A
Sbjct: 24 NSSLYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNARDAANAM 83
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
L+ L G+ ++I F+ + I+ +KNL + + N+ L F VFG++
Sbjct: 84 ENLNYVPLNGKPIRIMFSHRDPLIRKTGFANLFIKNLETSIDNKALHETFSVFGNVLSCK 143
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V +D G+SK G V+F +A A+ +
Sbjct: 144 VAMDSNGHSKGHGFVQFDNDQSAKNAIEKL 173
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 69/167 (41%), Gaps = 33/167 (19%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNAD 163
KF N +Y+ N+ T D+ +LF +G + I K+ K FGF+ +A
Sbjct: 198 KFTN---VYVKNLSESYTNEDLKQLFNTFGVITSVKIMKDENGNSKRFGFVNFQSSDSAA 254
Query: 164 KAKAKL------DGHVL-KGRSLKI-----------------RFAPINAA-IKVKNLTSC 198
A KL DG VL GR+ K R+ A + +KN+
Sbjct: 255 TAVEKLNGSTTNDGKVLFVGRAQKKSEREAELKAFFEQEKLKRYEKFQGANLYLKNIDKS 314
Query: 199 VTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ E L+ F FG I V+ D RG SK G V F A++A+
Sbjct: 315 LNEEKLKELFSEFGTITSCKVMSDARGRSKGVGFVAFTTPEEASKAI 361
>gi|334321716|ref|XP_003340149.1| PREDICTED: LOW QUALITY PROTEIN: ribonucleoprotein PTB-binding
2-like [Monodelphis domestica]
Length = 684
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 70/137 (51%), Gaps = 2/137 (1%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168
+ +N ++ L N+ D ++ +L K Y E + ++++ K F+ + A A
Sbjct: 74 ELSNRRKVLLRNLPPDTHSQEVHDLLKDY-ELKYCYVDRNKRTAFVTLLDGEQAQNAIQT 132
Query: 169 LDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGNS 227
+ L+G+ + ++ P +A + + NL T E E FG+IER ++ +E G+S
Sbjct: 133 FHQYSLRGKEITVQLQPTDALLCITNLPPSFTIEEFEELVRTFGNIERCFLVYNETTGHS 192
Query: 228 KCEGIVEFARKPAAAQA 244
K G VE+ +K +AA+A
Sbjct: 193 KGYGFVEYMKKDSAAKA 209
>gi|441675859|ref|XP_003280927.2| PREDICTED: uncharacterized protein LOC100588478 [Nomascus
leucogenys]
Length = 485
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 79/155 (50%), Gaps = 18/155 (11%)
Query: 105 NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKH 160
N D A+ LY+G++ ++TE + E F P G + I ++K+ G+ ++Y+
Sbjct: 281 NPDFPMAS---LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQ 337
Query: 161 NADKAKA--KLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGV 210
D +A L+ V+KGR ++I ++ + +++ +KNL + N+ L F
Sbjct: 338 PVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSA 397
Query: 211 FGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
FG+I V DE+G K G V F ++ +A +A+
Sbjct: 398 FGNILSCKVACDEKG-PKGYGFVHFQKQESAERAI 431
>gi|254839365|pdb|3H2U|B Chain B, Human Raver1 Rrm1, Rrm2, And Rrm3 Domains In Complex With
Human Vinculin Tail Domain Vt
gi|254839367|pdb|3H2U|D Chain D, Human Raver1 Rrm1, Rrm2, And Rrm3 Domains In Complex With
Human Vinculin Tail Domain Vt
Length = 283
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 2/137 (1%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168
+F N ++ + + GD+T ++ +L Y E + F++K K F+ + A+ A
Sbjct: 16 QFRNRRKILIRGLPGDVTNQEVHDLLSDY-ELKYCFVDKYKGTAFVTLLNGEQAEAAINA 74
Query: 169 LDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDER-GNS 227
L+ R L ++ P +A + V NL +T + E FG +ER ++ ER G S
Sbjct: 75 FHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQS 134
Query: 228 KCEGIVEFARKPAAAQA 244
K G E+ +K +AA+A
Sbjct: 135 KGYGFAEYMKKDSAARA 151
>gi|193650237|ref|XP_001943392.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 650
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 74/149 (49%), Gaps = 14/149 (9%)
Query: 114 CRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA-- 167
LY+G++ D+TE + E F G + + + + G+ +++++ AD +A
Sbjct: 2 ASLYVGDLHSDVTEAMLFEKFSTVGAILSIRVCRHVITRSSLGYAYVNFQNIADAERALD 61
Query: 168 KLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIV 219
++ +LKG ++I ++ + +++ +KNL + N+ + F FG+I V
Sbjct: 62 TMNFDILKGHPMRIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKV 121
Query: 220 IVDERGNSKCEGIVEFARKPAAAQALRRC 248
DE GNSK G V F K +A Q++ +
Sbjct: 122 AQDETGNSKGYGFVHFETKQSATQSIEKV 150
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 31/160 (19%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ NI ++ E ++ E+FK YG + + FGF+ + A+KA +L
Sbjct: 185 VYIKNIDENVNEKELFEMFKKYGTITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVTELH 244
Query: 171 G---------------------HVLKGRSLKIRFAPIN----AAIKVKNLTSCVTNELLE 205
G LK + + + IN + VKNL + +E L
Sbjct: 245 GKKSPEGKTYYVNRAQKKTERQQELKRKFEQYKIERINRYQGVNLYVKNLDDTIDDERLR 304
Query: 206 LAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I+ A V++D+ G SK G V F+ A +A+
Sbjct: 305 REFSAFGTIKSAKVMMDD-GRSKGFGFVYFSSPEEATKAV 343
>gi|341884731|gb|EGT40666.1| CBN-PAB-2 protein [Caenorhabditis brenneri]
Length = 707
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 78/160 (48%), Gaps = 17/160 (10%)
Query: 103 PQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDY 158
P N A+ LY+G++ GD+TE+ + E F G + + ++ G+ +++
Sbjct: 54 PPNATYSMAS---LYIGDLHGDVTESMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNF 110
Query: 159 KHNADKAKA--KLDGHVLKGRSLKIRFAPINAA--------IKVKNLTSCVTNELLELAF 208
+ AD +A ++ ++ GR ++I ++ + A I +KNL + N+ + F
Sbjct: 111 QQPADAERALDTMNFEIIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSIYDTF 170
Query: 209 GVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
+FG+I V D+ GNSK G V F + +A A+ +
Sbjct: 171 SLFGNILSCKVATDDDGNSKGYGFVHFETEASAQTAIEKV 210
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 71/171 (41%), Gaps = 38/171 (22%)
Query: 108 IKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNA 162
+K+ N +++ N G + E + E+F YGE + K K FGF+ A
Sbjct: 240 LKYTN---VFVKNFGEHLDEAKLKEMFSKYGEINSAVVMTDAEGKPKGFGFVAYADPEAA 296
Query: 163 DKAKAKLDGHVLKGRSLKI----------------------------RFAPINAAIKVKN 194
KA L+ +L+G LK+ R+ +N + VKN
Sbjct: 297 SKAVDDLNESILEGTELKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVN--LYVKN 354
Query: 195 LTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ +T+E L F FG I A V+VDE G SK G V F + A A+
Sbjct: 355 IEEELTDEGLRAHFAQFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAV 405
>gi|302683360|ref|XP_003031361.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
gi|300105053|gb|EFI96458.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
Length = 624
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 15/175 (8%)
Query: 86 EKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI 145
E++ A P L S P + A + LY+G + +TE+ + E+F G + +
Sbjct: 15 EQVAAAAPPPLGYAASAPTH-GANTATSASLYVGELDPTVTESMLFEIFNMIGPVASIRV 73
Query: 146 NKEKM----FGFIRMDYKHNAD--KAKAKLDGHVLKGRSLKIRFAPINAAIK-------- 191
++ + G+ ++Y + AD +A +L+ +K R +I ++ + A++
Sbjct: 74 CRDAVTRRSLGYAYVNYLNAADGERALEQLNYSSIKNRPCRIMWSQRDPALRKTGQGNIF 133
Query: 192 VKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALR 246
+KNL + N+ L F FG++ V DE GNSK G V + AA A++
Sbjct: 134 IKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGNSKGYGFVHYETAEAAENAIK 188
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 66/164 (40%), Gaps = 29/164 (17%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKHNADKA 165
A+ LY+ NI ++T+ + LFK YG+ Q + ++ FGF+ + A KA
Sbjct: 220 AHFTNLYVKNIDPEVTDEEFENLFKQYGQVQSSLLKRDDQGRNLGFGFVNFETHEEAQKA 279
Query: 166 KAKLDGHVLKGRSLKIRFAPINAA------------------------IKVKNLTSCVTN 201
L GR L + A A + +KNL V +
Sbjct: 280 VDALHESDFHGRKLYVARAQKKAEREAELRKQYDQARQERMNKYQGVNLYIKNLEDDVDD 339
Query: 202 ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
E L F FG I V+ DERG SK G V ++ A +A+
Sbjct: 340 EKLRAEFEPFGTITSCRVMRDERGKSKGFGFVCYSAPDEATKAV 383
>gi|389582520|dbj|GAB65258.1| RNA binding protein [Plasmodium cynomolgi strain B]
Length = 317
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 14/145 (9%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFI------NKEKMFGFIRMDYKHNADKAKAK 168
+ ++G I +I+ + E F+ YG Q + I + + F F+ M + N DK
Sbjct: 116 KFFIGGIPQNISNKYLTEYFEKYGPVQNVVIAQDHETKRNRGFAFVTMSSQINKDKIL-- 173
Query: 169 LDGHVLKGRSLKIR------FAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD 222
+D H L G+ + +R + I I V L T + LE F FG+I+ +++D
Sbjct: 174 IDTHELNGKRVDVREENNTIPSDIQRKIFVGGLNYYWTKDTLESYFSAFGEIDVVQIVLD 233
Query: 223 ERGNSKCEGIVEFARKPAAAQALRR 247
G S+C G V FA + + A+ L+
Sbjct: 234 SSGRSRCFGFVVFANESSVAKVLKH 258
>gi|72534835|ref|NP_001026846.1| poly A binding protein, cytoplasmic 1 a [Danio rerio]
gi|71534060|gb|AAH99992.1| Poly A binding protein, cytoplasmic 1 a [Danio rerio]
Length = 634
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ M G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETHEAAERAIEK 157
Score = 41.6 bits (96), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + E+F YG + + K K FGF+ + +A +A +++
Sbjct: 193 VYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVN--LYVKNLDDGLDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
>gi|354544113|emb|CCE40835.1| hypothetical protein CPAR2_108740 [Candida parapsilosis]
Length = 650
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 14/148 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA 167
N+ LY+G + + E + E+F P G+ + + ++ K G+ ++Y D KA
Sbjct: 61 NSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNYHKFEDGEKA 120
Query: 168 --KLDGHVLKGRSLKIRFAPINAA--------IKVKNLTSCVTNELLELAFGVFGDIERA 217
+L+ +++GR +I ++ + + I +KNL + N+ L F FG I
Sbjct: 121 IDELNYSLVEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGRILSC 180
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V D+ G SKC G V + AA A+
Sbjct: 181 KVATDDMGQSKCFGFVHYETGEAAEAAI 208
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 73/164 (44%), Gaps = 29/164 (17%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMD-YKHNADK 164
AN +Y+ NI TE + ELF PYG+ +++ K+ K FGF+ + +K D
Sbjct: 241 ANYTNIYVKNIDLGFTEKEFEELFAPYGKITSIYLEKDQDGKSKGFGFVNYEEHKSAVDA 300
Query: 165 AKAKLDGHV-------------------LKGRSLKIRFAPIN----AAIKVKNLTSCVTN 201
+A D + LK + IR ++ + +KNL + +
Sbjct: 301 VEALNDKEINGQKIYVGRAQKKRERTEELKKQYEAIRLEKLSKYQGVNLFIKNLDDQIDS 360
Query: 202 ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
E LE F FG I A V+VD+ G SK G V F+ A +A+
Sbjct: 361 EKLEEEFKPFGTITSAKVMVDDAGKSKGFGFVCFSTPEEATKAI 404
>gi|343197708|pdb|3SMZ|A Chain A, Human Raver1 Rrm1-3 Domains (Residues 39-320)
Length = 284
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 2/137 (1%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168
+F N ++ + + GD+T ++ +L Y E + F++K K F+ + A+ A
Sbjct: 18 QFRNRRKILIRGLPGDVTNQEVHDLLSDY-ELKYCFVDKYKGTAFVTLLNGEQAEAAINA 76
Query: 169 LDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDER-GNS 227
L+ R L ++ P +A + V NL +T + E FG +ER ++ ER G S
Sbjct: 77 FHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQS 136
Query: 228 KCEGIVEFARKPAAAQA 244
K G E+ +K +AA+A
Sbjct: 137 KGYGFAEYMKKDSAARA 153
>gi|345316987|ref|XP_003429815.1| PREDICTED: embryonic polyadenylate-binding protein A-like
[Ornithorhynchus anatinus]
Length = 540
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 75/144 (52%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHVDVTEAMLYEKFSPAGSIISIRVCRDVASRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + ++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNLDDSIDNKALYDTFSTFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE G S+ G V F + AA+QA+
Sbjct: 133 DEHG-SRGFGFVHFETREAASQAI 155
>gi|156097987|ref|XP_001615026.1| RNA binding protein [Plasmodium vivax Sal-1]
gi|148803900|gb|EDL45299.1| RNA binding protein, putative [Plasmodium vivax]
Length = 361
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 14/145 (9%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFI------NKEKMFGFIRMDYKHNADKAKAK 168
+ ++G I +I+ +IE F+ YG Q I + + F F+ M + N DK
Sbjct: 119 KFFIGGIPQNISNKYLIEYFEKYGPVQNAVIAQDHETKRNRGFAFVTMSSQINKDKIL-- 176
Query: 169 LDGHVLKGRSLKIR------FAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD 222
+D H G+ + +R + I I V L T + LE F FG+I+ +++D
Sbjct: 177 IDTHEFNGKRVDVREEHNTTPSDIQRKIFVGGLNYYWTKDTLESYFSAFGEIDVVQIVLD 236
Query: 223 ERGNSKCEGIVEFARKPAAAQALRR 247
G S+C G V FA + + A+ L+
Sbjct: 237 SSGRSRCFGFVVFANESSVAKVLKH 261
>gi|149244358|ref|XP_001526722.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|158514320|sp|A5DW14.1|PABP_LODEL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|146449116|gb|EDK43372.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 661
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 14/148 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYK--HNADKA 165
N+ LY+G + + E + E+F P G+ + + ++ K G+ ++Y + +KA
Sbjct: 65 NSASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGEKA 124
Query: 166 KAKLDGHVLKGRSLKIRFAPINAA--------IKVKNLTSCVTNELLELAFGVFGDIERA 217
+L+ ++GR +I ++ + + I +KNL + N+ L F FG I
Sbjct: 125 IEELNYTPVEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSV 184
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V D+ G SKC G V + + AA A+
Sbjct: 185 KVATDDLGQSKCFGFVHYETEEAAQAAI 212
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 33/166 (19%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKA 165
AN +Y+ NI TE + ELF P+G+ +++ K+ K FGF+ + A KA
Sbjct: 245 ANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKA 304
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+L+ + G+ + + ++ +N + VKNL +
Sbjct: 305 VEELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVN--LFVKNLDEQI 362
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+E LE F FG I + V+VD+ G SK G V F+ A +A+
Sbjct: 363 DSEKLEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAI 408
>gi|356576101|ref|XP_003556172.1| PREDICTED: polyadenylate-binding protein 5-like isoform 1 [Glycine
max]
Length = 652
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAK 166
N LY+G++ G++ E + +LF + + + +++ + ++ +A A
Sbjct: 34 NASLYVGDLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDASNAM 93
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
L+ L G+ ++I F+ + +I+ +KNL + + N+ L F FG +
Sbjct: 94 ELLNFTPLNGKPIRIMFSQRDPSIRKSGHGNVFIKNLDTSIDNKALHDTFAAFGTVLSCK 153
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V +D G SK G V+F + AA A++R
Sbjct: 154 VALDSSGQSKGYGFVQFDNEEAAQNAIKRL 183
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 17/150 (11%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + + F +G + + K +GF++ D + A A +L+
Sbjct: 125 VFIKNLDTSIDNKALHDTFAAFGTVLSCKVALDSSGQSKGYGFVQFDNEEAAQNAIKRLN 184
Query: 171 GHVLKGRSLKIRF------------APINAAIKVKNLTSCVTNELLELAFGVFGDIERAI 218
G ++ + + + +P + VKNL+ T+E L+ FG +G I A
Sbjct: 185 GMLINDKQVYVGLFIRRQEREQTNGSPKFTNVYVKNLSETYTDEDLKKLFGPYGTITSAT 244
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V+ D G S+C G V F +AA A+ R
Sbjct: 245 VMKDVNGKSRCFGFVNFQNPDSAAAAVERL 274
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 33/174 (18%)
Query: 102 EPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRM 156
E N KF N +Y+ N+ T+ D+ +LF PYG + K+ + FGF+
Sbjct: 205 EQTNGSPKFTN---VYVKNLSETYTDEDLKKLFGPYGTITSATVMKDVNGKSRCFGFVNF 261
Query: 157 DYKHNADKAKAKLDGHVLKG-RSLKI--------RFAPINAAIK---------------- 191
+A A +L+G + R L + R A + A I+
Sbjct: 262 QNPDSAAAAVERLNGTTINNDRVLYVGRAQRKAEREAELKAKIEQERISRYEKLQGANLY 321
Query: 192 VKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+KNL ++E L+ F FG I V++D G SK G V F+ A++AL
Sbjct: 322 LKNLDDSFSDEKLKDLFSEFGTITSCKVMIDSNGRSKGSGFVSFSTPEEASKAL 375
>gi|410904819|ref|XP_003965889.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 636
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR L+I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETHEAAERAIEK 157
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 68/161 (42%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + ELF YG + + K K FGF+ + +A KA ++
Sbjct: 193 VYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDDGGKSKGFGFVSFERHEDAQKAVDDMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L GR + + R+ +N + VKNL + +E L
Sbjct: 253 GKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVN--LYVKNLDDGLDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
>gi|449508972|ref|XP_002195250.2| PREDICTED: ribonucleoprotein PTB-binding 2 [Taeniopygia guttata]
Length = 671
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 71/137 (51%), Gaps = 2/137 (1%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168
+ N ++ L N+ + + +I +LFK Y E + ++++ K F+ + A A +
Sbjct: 103 ELGNRRKILLRNLPAESSSQEIHDLFKDY-EIKYCYVDRNKRTAFVTLLNGEQAQSAIRR 161
Query: 169 LDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGNS 227
H L+G+ + ++ P +A + + NL + E E +G++ER ++ E G+S
Sbjct: 162 FHQHSLRGKEISVQLQPTDALLCITNLPLSLRIEEFEELVRAYGNVERCFLVYSELTGHS 221
Query: 228 KCEGIVEFARKPAAAQA 244
K G VE+ +K +AA+A
Sbjct: 222 KGYGFVEYMKKDSAAKA 238
>gi|432907583|ref|XP_004077665.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 635
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR L+I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETHEAAERAIEK 157
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 68/161 (42%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + ELF YG + + K K FGF+ + +A KA ++
Sbjct: 193 VYIKNFGEDMDDEKLKELFGNYGPALSVRVMTDDTGKSKGFGFVSFERHEDAQKAVDDMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L GR + + R+ +N + VKNL + +E L
Sbjct: 253 GKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVN--LYVKNLDDGLDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + A++A K++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINA------AIKVKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A + +KN + +E L+ FG +G
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKELFGNYGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D+ G SK G V F R A +A+
Sbjct: 221 RVMTDDTGKSKGFGFVSFERHEDAQKAV 248
>gi|425772940|gb|EKV11320.1| Polyadenylate-binding protein [Penicillium digitatum PHI26]
gi|425781989|gb|EKV19920.1| Polyadenylate-binding protein [Penicillium digitatum Pd1]
Length = 736
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 74/151 (49%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
++ LY+G + +TE + ELF G+ + + ++ + G+ ++Y + AD +A
Sbjct: 43 HSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 102
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
L+ ++KG+ +I ++ + A++ +KNL + + N+ L F FG+I
Sbjct: 103 LEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDNAIDNKALHDTFAAFGNILSC 162
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE NSK G V + AA A++
Sbjct: 163 KVAQDEFANSKGYGFVHYETAEAANNAIKHV 193
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 67/155 (43%), Gaps = 21/155 (13%)
Query: 116 LYLGNIGGDITENDIIELFKPYGE------TQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+++ N+ I + + F +G Q+ F N K +GF+ + A+ A +
Sbjct: 135 VFIKNLDNAIDNKALHDTFAAFGNILSCKVAQDEFANS-KGYGFVHYETAEAANNAIKHV 193
Query: 170 DGHVLKGRSLKI-----------RFAPINAA---IKVKNLTSCVTNELLELAFGVFGDIE 215
+G +L + + + +F + A I +KN+ +T++ + F FG+I
Sbjct: 194 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDLEITDDEFRVMFEAFGEIT 253
Query: 216 RAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAE 250
A + D+ G S+ G V +A +A A+ E
Sbjct: 254 SATLSHDQDGKSRGFGFVNYANHESAEAAVAEMNE 288
>gi|356576103|ref|XP_003556173.1| PREDICTED: polyadenylate-binding protein 5-like isoform 2 [Glycine
max]
Length = 642
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAK 166
N LY+G++ G++ E + +LF + + + +++ + ++ +A A
Sbjct: 34 NASLYVGDLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDASNAM 93
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
L+ L G+ ++I F+ + +I+ +KNL + + N+ L F FG +
Sbjct: 94 ELLNFTPLNGKPIRIMFSQRDPSIRKSGHGNVFIKNLDTSIDNKALHDTFAAFGTVLSCK 153
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V +D G SK G V+F + AA A++R
Sbjct: 154 VALDSSGQSKGYGFVQFDNEEAAQNAIKRL 183
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 17/150 (11%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + + F +G + + K +GF++ D + A A +L+
Sbjct: 125 VFIKNLDTSIDNKALHDTFAAFGTVLSCKVALDSSGQSKGYGFVQFDNEEAAQNAIKRLN 184
Query: 171 GHVLKGRSLKIRF------------APINAAIKVKNLTSCVTNELLELAFGVFGDIERAI 218
G ++ + + + +P + VKNL+ T+E L+ FG +G I A
Sbjct: 185 GMLINDKQVYVGLFIRRQEREQTNGSPKFTNVYVKNLSETYTDEDLKKLFGPYGTITSAT 244
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V+ D G S+C G V F +AA A+ R
Sbjct: 245 VMKDVNGKSRCFGFVNFQNPDSAAAAVERL 274
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 33/174 (18%)
Query: 102 EPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRM 156
E N KF N +Y+ N+ T+ D+ +LF PYG + K+ + FGF+
Sbjct: 205 EQTNGSPKFTN---VYVKNLSETYTDEDLKKLFGPYGTITSATVMKDVNGKSRCFGFVNF 261
Query: 157 DYKHNADKAKAKLDGHVLKG-RSLKI--------RFAPINAAIK---------------- 191
+A A +L+G + R L + R A + A I+
Sbjct: 262 QNPDSAAAAVERLNGTTINNDRVLYVGRAQRKAEREAELKAKIEQERISRYEKLQGANLY 321
Query: 192 VKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+KNL ++E L+ F FG I V++D G SK G V F+ A++AL
Sbjct: 322 LKNLDDSFSDEKLKDLFSEFGTITSCKVMIDSNGRSKGSGFVSFSTPEEASKAL 375
>gi|348529271|ref|XP_003452137.1| PREDICTED: polyadenylate-binding protein 1-like [Oreochromis
niloticus]
Length = 635
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR L+I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETHEAAERAIEK 157
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 69/161 (42%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + ELF YG + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L GR + + R+ +N + VKNL + +E L
Sbjct: 253 GKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVN--LYVKNLDDGLDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
Score = 39.3 bits (90), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + A++A K++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINA------AIKVKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A + +KN + +E L+ F +G
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKELFSKYGPALSI 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 RVMTDESGKSKGFGFVSFERHEDAQKAV 248
>gi|255940906|ref|XP_002561222.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585845|emb|CAP93573.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 734
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 74/151 (49%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
++ LY+G + +TE + ELF G+ + + ++ + G+ ++Y + AD +A
Sbjct: 43 HSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 102
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
L+ ++KG+ +I ++ + A++ +KNL + + N+ L F FG+I
Sbjct: 103 LEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDNAIDNKALHDTFAAFGNILSC 162
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE NSK G V + AA A++
Sbjct: 163 KVAQDEFANSKGYGFVHYETAEAANNAIKHV 193
Score = 38.9 bits (89), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 66/155 (42%), Gaps = 21/155 (13%)
Query: 116 LYLGNIGGDITENDIIELFKPYGE------TQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+++ N+ I + + F +G Q+ F N K +GF+ + A+ A +
Sbjct: 135 VFIKNLDNAIDNKALHDTFAAFGNILSCKVAQDEFANS-KGYGFVHYETAEAANNAIKHV 193
Query: 170 DGHVLKGRSLKI-----------RFAPINAA---IKVKNLTSCVTNELLELAFGVFGDIE 215
+G +L + + + +F + A I +KN+ +T++ F FG+I
Sbjct: 194 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDLEITDDEFRTMFEAFGEIT 253
Query: 216 RAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAE 250
A + D+ G S+ G V +A +A A+ E
Sbjct: 254 SATLSHDQDGKSRGFGFVNYANHESAEAAVAEMNE 288
>gi|301756358|ref|XP_002914026.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 636
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 76/146 (52%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + I ++K+ G+ ++Y+ D +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPRDSERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + + A++A K++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + +E L+ FG FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAV 248
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + +LF +G + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
>gi|409082274|gb|EKM82632.1| hypothetical protein AGABI1DRAFT_111221 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 671
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 80/168 (47%), Gaps = 15/168 (8%)
Query: 94 PTLDLP-PSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-- 150
P++ +P P P A + LY+G + +TE + E+F G + + ++ +
Sbjct: 21 PSVPVPAPYNPPAPQASTAPSASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTR 80
Query: 151 --FGFIRMDYKHNAD--KAKAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSC 198
G+ ++Y + AD +A +L+ ++K R+ +I ++ + A++ +KNL
Sbjct: 81 RSLGYAYVNYLNAADGERALEQLNYSLIKNRACRIMWSQRDPALRKTGQGNVFIKNLDEA 140
Query: 199 VTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALR 246
+ N+ L F FG++ V DE G SK G V + AA A++
Sbjct: 141 IDNKALHDTFVAFGNVLSCKVATDEHGRSKGYGFVHYETAEAADNAIK 188
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 67/166 (40%), Gaps = 33/166 (19%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKA 165
A LY+ N+ ++T+ + ELF YG + K K FGF+ + A +A
Sbjct: 220 AQFTNLYIKNLDTEVTQEEFTELFTRYGNVTSSLVATDEEGKSKGFGFVNYERHEEAQRA 279
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+L LKG+ L + ++ IN + +KNL
Sbjct: 280 VDELHDTDLKGKKLFVARAQKKAEREDELRRSYEQAKLEKLSKYQGIN--LYIKNLEDDF 337
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
++ L F FG I V+ DE+G SK G V F+ A +A+
Sbjct: 338 DDDKLRAEFEPFGAITSCKVMRDEKGTSKGFGFVCFSSPDEATKAV 383
Score = 38.9 bits (89), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 63/149 (42%), Gaps = 19/149 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + + F +G + + K +GF+ + AD A ++
Sbjct: 132 VFIKNLDEAIDNKALHDTFVAFGNVLSCKVATDEHGRSKGYGFVHYETAEAADNAIKSVN 191
Query: 171 GHVLKGRSLKI-----------RFAPINAA---IKVKNLTSCVTNELLELAFGVFGDIER 216
G +L + + + + + A + +KNL + VT E F +G++
Sbjct: 192 GMLLNDKKVYVGHHISRKERQSKLDEMKAQFTNLYIKNLDTEVTQEEFTELFTRYGNVTS 251
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQAL 245
++V DE G SK G V + R A +A+
Sbjct: 252 SLVATDEEGKSKGFGFVNYERHEEAQRAV 280
>gi|159462882|ref|XP_001689671.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
gi|158283659|gb|EDP09409.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
Length = 636
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 18/165 (10%)
Query: 99 PPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFI 154
P + Q AN+ LY+G++ D+TE + ELF G + + ++ + G+
Sbjct: 9 PAATTQPASTPLANSS-LYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYA 67
Query: 155 RMDYK-----HNADKAKAKLDGHVLKGRSLKIRFAPINAA--------IKVKNLTSCVTN 201
++Y AD+A L+ HV+ G+ ++I ++ + + I +KNL +
Sbjct: 68 YVNYNSALDPQAADRAMETLNYHVVNGKPMRIMWSHRDPSARKSGVGNIFIKNLDKTIDA 127
Query: 202 ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALR 246
+ L F FG I V D G SK G V F + AA +A++
Sbjct: 128 KALHDTFSAFGKILSCKVATDANGVSKGYGFVHFEDQAAADRAIQ 172
>gi|426200105|gb|EKV50029.1| hypothetical protein AGABI2DRAFT_190442 [Agaricus bisporus var.
bisporus H97]
Length = 673
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 80/168 (47%), Gaps = 15/168 (8%)
Query: 94 PTLDLP-PSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-- 150
P++ +P P P A + LY+G + +TE + E+F G + + ++ +
Sbjct: 21 PSVPVPAPYNPPAPQASTAPSASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTR 80
Query: 151 --FGFIRMDYKHNAD--KAKAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSC 198
G+ ++Y + AD +A +L+ ++K R+ +I ++ + A++ +KNL
Sbjct: 81 RSLGYAYVNYLNAADGERALEQLNYSLIKNRACRIMWSQRDPALRKTGQGNVFIKNLDEA 140
Query: 199 VTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALR 246
+ N+ L F FG++ V DE G SK G V + AA A++
Sbjct: 141 IDNKALHDTFVAFGNVLSCKVATDEHGRSKGYGFVHYETAEAADNAIK 188
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 65/164 (39%), Gaps = 29/164 (17%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKA 165
A LY+ N+ ++T+ + ELF YG + K K FGF+ + A +A
Sbjct: 220 AQFTNLYIKNLDTEVTQEEFTELFTRYGNVTSSLVATDEEGKSKGFGFVNYERHEEAQRA 279
Query: 166 KAKLDGHVLKGRSLKIRFAPINAA------------------------IKVKNLTSCVTN 201
+L LKG+ L + A A + +KNL +
Sbjct: 280 VDELHDTDLKGKKLFVARAQKKAEREDELRRSYEQAKLEKLSKYQGVNLYIKNLEDDFDD 339
Query: 202 ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ L F FG I V+ DE+G SK G V F+ A +A+
Sbjct: 340 DKLRAEFEPFGAITSCKVMRDEKGTSKGFGFVCFSSPDEATKAV 383
Score = 38.9 bits (89), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 63/149 (42%), Gaps = 19/149 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + + F +G + + K +GF+ + AD A ++
Sbjct: 132 VFIKNLDEAIDNKALHDTFVAFGNVLSCKVATDEHGRSKGYGFVHYETAEAADNAIKSVN 191
Query: 171 GHVLKGRSLKI-----------RFAPINAA---IKVKNLTSCVTNELLELAFGVFGDIER 216
G +L + + + + + A + +KNL + VT E F +G++
Sbjct: 192 GMLLNDKKVYVGHHISRKERQSKLDEMKAQFTNLYIKNLDTEVTQEEFTELFTRYGNVTS 251
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQAL 245
++V DE G SK G V + R A +A+
Sbjct: 252 SLVATDEEGKSKGFGFVNYERHEEAQRAV 280
>gi|115461392|ref|NP_001054296.1| Os04g0682400 [Oryza sativa Japonica Group]
gi|113565867|dbj|BAF16210.1| Os04g0682400 [Oryza sativa Japonica Group]
Length = 1008
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 78/165 (47%), Gaps = 28/165 (16%)
Query: 106 KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKA 165
K+I AN LY+G + +TE+ I+LF+P+G + + + + +G +R D A A
Sbjct: 681 KEIDMAN---LYVGRVPSSLTEDQFIDLFRPFGRVVQARMFRFQRYGMVRFDNPSCAAAA 737
Query: 166 KAKLDGHVLKGRSLKIRFAPI----NAA--------------------IKVKNLTSCVTN 201
LDG+ + G L +R A + NAA + V +L S V N
Sbjct: 738 IDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDMTNLYVSHLPSYVNN 797
Query: 202 ELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQAL 245
E L F G I +A V+V+ G SK G V+FA +AA AL
Sbjct: 798 ERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVAL 842
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 23/170 (13%)
Query: 99 PPSEPQNK-DIKFANNCRLYLGNIGGDITENDIIELFKPYGE------TQELFINKEKMF 151
PPS PQ+ +K +N LY+GN+ + + +IELF P+G+ + F + +
Sbjct: 277 PPSFPQDGGKLKEVDNTNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGY 336
Query: 152 GFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA--PIN-------------AAIKVKNLT 196
GF++ A +A +++G +++G +LK+R P + A + V NL+
Sbjct: 337 GFVKYSDPRCASEAIKRMNGRLVEGTALKVRVTGFPSSEDNSQQPSKETDMAKLYVCNLS 396
Query: 197 SCVTNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQAL 245
+ + L F FG++ A V D G SK G V+++ AA+A+
Sbjct: 397 LSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAV 446
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 42/172 (24%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAK 168
+LY+ N+ + + +I LF P+GE + K+ K +GF++ H+A +A
Sbjct: 389 KLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIH 448
Query: 169 LDGHVLKGRSLKIRFAPI-----NAAIK----------------------------VKNL 195
L+G ++ GR +++R + I N+A++ V N+
Sbjct: 449 LNGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNM 508
Query: 196 TSCV-TNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQAL 245
S + T +L+EL F FG I A V+ D + ++K G ++F +A +A+
Sbjct: 509 PSSIDTKKLVEL-FLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAI 559
Score = 45.1 bits (105), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 72/152 (47%), Gaps = 26/152 (17%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDG 171
N RLY+ N+ +T + ++ LF P+G+ ++ +N E + + +A KA +DG
Sbjct: 595 NKSRLYITNLPRSMTADKMVNLFAPFGQITKVLMNLE--YSLVWYADAPSATKAVQHMDG 652
Query: 172 HVLKGRSLKIR---FAPINAA---------IKVKNL------TSCVTNELLELAFGVFGD 213
++++G+ L ++ NA+ I + NL +S ++ ++L F FG
Sbjct: 653 YMVEGKRLVVKRSELCTTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDL-FRPFGR 711
Query: 214 IERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ +A + +R G+V F AA A+
Sbjct: 712 VVQARMFRFQR-----YGMVRFDNPSCAAAAI 738
>gi|68468953|ref|XP_721535.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|68469502|ref|XP_721264.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|74680286|sp|Q5AI15.1|PABP_CANAL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|46443173|gb|EAL02457.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|46443455|gb|EAL02737.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|238879187|gb|EEQ42825.1| polyadenylate-binding protein [Candida albicans WO-1]
Length = 629
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 14/138 (10%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNAD--KA 165
N+ LY+G + + E + E+F P G+ + + ++ K G+ ++Y D KA
Sbjct: 50 NSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKA 109
Query: 166 KAKLDGHVLKGRSLKIRFAPINAA--------IKVKNLTSCVTNELLELAFGVFGDIERA 217
+L+ + ++GR +I ++ + + I +KNL + N+ L F FG I
Sbjct: 110 IEELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSC 169
Query: 218 IVIVDERGNSKCEGIVEF 235
V DE G SKC G V +
Sbjct: 170 KVATDEFGQSKCFGFVHY 187
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 33/166 (19%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKA 165
AN +Y+ NI + +E +LF P+G+ +++ K+ K FGF+ + +A KA
Sbjct: 230 ANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKA 289
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+L+ + G+ + + ++ +N + VKNL +
Sbjct: 290 VEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVN--LFVKNLDDTI 347
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+E LE F FG I A V+VDE G SK G V F A +A+
Sbjct: 348 DSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAI 393
>gi|38345560|emb|CAE03434.2| OSJNBa0032F06.17 [Oryza sativa Japonica Group]
Length = 924
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 78/165 (47%), Gaps = 28/165 (16%)
Query: 106 KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKA 165
K+I AN LY+G + +TE+ I+LF+P+G + + + + +G +R D A A
Sbjct: 597 KEIDMAN---LYVGRVPSSLTEDQFIDLFRPFGRVVQARMFRFQRYGMVRFDNPSCAAAA 653
Query: 166 KAKLDGHVLKGRSLKIRFAPI----NAA--------------------IKVKNLTSCVTN 201
LDG+ + G L +R A + NAA + V +L S V N
Sbjct: 654 IDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDMTNLYVSHLPSYVNN 713
Query: 202 ELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQAL 245
E L F G I +A V+V+ G SK G V+FA +AA AL
Sbjct: 714 ERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVAL 758
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 23/170 (13%)
Query: 99 PPSEPQNK-DIKFANNCRLYLGNIGGDITENDIIELFKPYGE------TQELFINKEKMF 151
PPS PQ+ +K +N LY+GN+ + + +IELF P+G+ + F + +
Sbjct: 193 PPSFPQDGGKLKEVDNTNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGY 252
Query: 152 GFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA--PIN-------------AAIKVKNLT 196
GF++ A +A +++G +++G +LK+R P + A + V NL+
Sbjct: 253 GFVKYSDPRCASEAIKRMNGRLVEGTALKVRVTGFPSSEDNSQQPSKETDMAKLYVCNLS 312
Query: 197 SCVTNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQAL 245
+ + L F FG++ A V D G SK G V+++ AA+A+
Sbjct: 313 LSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAV 362
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 42/172 (24%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAK 168
+LY+ N+ + + +I LF P+GE + K+ K +GF++ H+A +A
Sbjct: 305 KLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIH 364
Query: 169 LDGHVLKGRSLKIRFAPI-----NAAIK----------------------------VKNL 195
L+G ++ GR +++R + I N+A++ V N+
Sbjct: 365 LNGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNM 424
Query: 196 TSCV-TNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQAL 245
S + T +L+EL F FG I A V+ D + ++K G ++F +A +A+
Sbjct: 425 PSSIDTKKLVEL-FLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAI 475
Score = 45.1 bits (105), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 72/152 (47%), Gaps = 26/152 (17%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDG 171
N RLY+ N+ +T + ++ LF P+G+ ++ +N E + + +A KA +DG
Sbjct: 511 NKSRLYITNLPRSMTADKMVNLFAPFGQITKVLMNLE--YSLVWYADAPSATKAVQHMDG 568
Query: 172 HVLKGRSLKIR---FAPINAA---------IKVKNL------TSCVTNELLELAFGVFGD 213
++++G+ L ++ NA+ I + NL +S ++ ++L F FG
Sbjct: 569 YMVEGKRLVVKRSELCTTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDL-FRPFGR 627
Query: 214 IERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ +A + +R G+V F AA A+
Sbjct: 628 VVQARMFRFQR-----YGMVRFDNPSCAAAAI 654
>gi|432855189|ref|XP_004068116.1| PREDICTED: ribonucleoprotein PTB-binding 2-like [Oryzias latipes]
Length = 774
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 71/138 (51%), Gaps = 2/138 (1%)
Query: 108 IKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKA 167
++ +N ++ + N+ D T ++ E+ K Y E + F+++ K F+ + A A
Sbjct: 77 LELSNRRKILIKNLPPDTTNQEVHEILKDY-ELKYCFVDRNKGTAFVTLLNGDQAQDAIR 135
Query: 168 KLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGN 226
L ++GR + + P ++ + + NL T + E +G+IER+ ++ E G+
Sbjct: 136 SLHHSTVRGRLINVALQPTDSLLCLTNLPHTFTAQQFEELVRSYGNIERSFLVYSELTGH 195
Query: 227 SKCEGIVEFARKPAAAQA 244
SK G VE+ +K +A++A
Sbjct: 196 SKGYGFVEYMKKDSASRA 213
>gi|328713207|ref|XP_001947071.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 75/147 (51%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F G + + ++ + G+ +++++ AD +A +
Sbjct: 4 LYVGDLHSDVTEAMLFEKFSTVGAVLSIRVCRDMITRRSLGYAYVNFQNMADAERALDTM 63
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ +LKGR ++I ++ + +++ +KNL + N+ + F FG+I V
Sbjct: 64 NFDILKGRPMRIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQ 123
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE G SK G V F + +A Q++ +
Sbjct: 124 DETGQSKGYGFVHFEMEQSATQSIEKV 150
>gi|170047041|ref|XP_001851048.1| no-on-transient A [Culex quinquefasciatus]
gi|167869600|gb|EDS32983.1| no-on-transient A [Culex quinquefasciatus]
Length = 399
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 50/101 (49%), Gaps = 27/101 (26%)
Query: 289 YKQRQVGPRFATVNSFEFEYGSRWKQLHELY---------------------------EH 321
+ RQ G RFA V S + EYG RWK +HE+Y EH
Sbjct: 115 FDSRQQGLRFADVGSLDHEYGQRWKHMHEMYKQKVEALKRDMVMEEKKLEAQMEFARHEH 174
Query: 322 ETEMLRKELAQREIDRERQKAEWEMKERQAEELKRRDEELM 362
E E LR++L +R D+ R+KA+WEMKE E + R ++ M
Sbjct: 175 EIEQLREQLRKRAQDKARKKADWEMKEHFVIESRERLQQQM 215
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 43/80 (53%), Gaps = 14/80 (17%)
Query: 129 DIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINA 188
+++ELF PY E E+FIN +K DY NA+K K K LKIRFAP
Sbjct: 50 ELVELFPPYDEITEVFINMKK-------DYAFNAEKVKRK-------NCILKIRFAPNAT 95
Query: 189 AIKVKNLTSCVTNELLELAF 208
A++V NL TNELL F
Sbjct: 96 ALRVSNLNPFGTNELLYRVF 115
>gi|291227649|ref|XP_002733794.1| PREDICTED: polyadenylate-binding protein 1-like [Saccoglossus
kowalevskii]
Length = 655
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 76/147 (51%), Gaps = 15/147 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHNDVTEAMLFEKFSSAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + +++ +KNL + N+ + F FGDI V+
Sbjct: 73 NFDVIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGDILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE G SK G V FA + AA +++ +
Sbjct: 133 DENG-SKGYGFVHFATEEAANKSIEKV 158
>gi|7239504|gb|AAF43230.1|AC012654_14 Identical to the polyadenylate-binding protein 5 (PAB5) from
Arabidopsis thaliana gb|M97657 [Arabidopsis thaliana]
Length = 668
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 19/152 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQEL-----FINKEKMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + E F +G + + K +GF++ + + A A KL+
Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLN 193
Query: 171 GHVLKGRSLKI-RFA-------------PINAAIKVKNLTSCVTNELLELAFGVFGDIER 216
G +L + + + F P + VKNL +T++ L+ FG +GDI
Sbjct: 194 GMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISS 253
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
A+V+ D+ GNS+ G V F AAA A+ +
Sbjct: 254 AVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKM 285
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 67/149 (44%), Gaps = 13/149 (8%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKHNADKAKA 167
N LY+G++ + E+ +++LF L + ++ + ++ +A +A
Sbjct: 44 NSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAME 103
Query: 168 KLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIV 219
L+ ++ R ++I + + + + +KNL + + N+ L F FG I V
Sbjct: 104 SLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKV 163
Query: 220 IVDERGNSKCEGIVEFARKPAAAQALRRC 248
+D G SK G V+F ++ A A+ +
Sbjct: 164 AMDVVGRSKGYGFVQFEKEETAQAAIDKL 192
>gi|453085206|gb|EMF13249.1| polyadenylate binding protein [Mycosphaerella populorum SO2202]
Length = 760
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 81/170 (47%), Gaps = 19/170 (11%)
Query: 93 GPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-- 150
PTL + P N + N+ LY+G + +TE + ELF G+ + + ++ +
Sbjct: 37 APTLT--SAAPANAN---PNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTR 91
Query: 151 ----FGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSC 198
+ ++ + ++ ++A +L+ ++KG+ +I ++ + A++ +KNL +
Sbjct: 92 RSLGYAYVNYNSANDGERALEELNYTLIKGKPCRIMWSQRDPALRKTGHGNIFIKNLDAA 151
Query: 199 VTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
+ N+ L F FG+I V DE G S+ G V + AA A++
Sbjct: 152 IDNKALHDTFAAFGNILSCKVAQDESGGSRGYGFVHYETAEAANAAIKSV 201
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 33/155 (21%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKHNADKA 165
AN +Y+ NI + T+++ ELF+ YGE + +++ FGF+ +A+KA
Sbjct: 231 ANFTNIYVKNIDTETTDDEFRELFEKYGEITSASLARDQEGKVRGFGFVNYIRHEDANKA 290
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+L+ K + L + ++ +N + VKNL +
Sbjct: 291 VDELNDIDFKSQKLYVGRAQKKHEREEELRRQYEAQRQEKSAKYMGVN--LYVKNLADDI 348
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVE 234
+E L F +G I A V+ D + E E
Sbjct: 349 DDEELRKVFEAYGSITSAKVMRDTTPADQVENAEE 383
>gi|166786|gb|AAA32832.1| poly(A)-binding protein [Arabidopsis thaliana]
Length = 668
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 19/152 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQEL-----FINKEKMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + E F +G + + K +GF++ + + A A KL+
Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLN 193
Query: 171 GHVLKGRSLKI-RFA-------------PINAAIKVKNLTSCVTNELLELAFGVFGDIER 216
G +L + + + F P + VKNL +T++ L+ FG +GDI
Sbjct: 194 GMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISS 253
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
A+V+ D+ GNS+ G V F AAA A+ +
Sbjct: 254 AVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKM 285
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 67/149 (44%), Gaps = 13/149 (8%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKHNADKAKA 167
N LY+G++ + E+ +++LF L + ++ + ++ +A +A
Sbjct: 44 NSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAME 103
Query: 168 KLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIV 219
L+ ++ R ++I + + + + +KNL + + N+ L F FG I V
Sbjct: 104 SLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKV 163
Query: 220 IVDERGNSKCEGIVEFARKPAAAQALRRC 248
+D G SK G V+F ++ A A+ +
Sbjct: 164 AMDVVGRSKGYGFVQFEKEETAQAAIDKL 192
>gi|410910966|ref|XP_003968961.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 635
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 76/146 (52%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHTDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ E + ++F YG + + K + FGF+ + +A KA +++
Sbjct: 193 VYIKNFGDDMDEEKLRDVFNKYGNAMSIRVMTDDSGKSRGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKEMNGKPIYVGRAQKKVERQAELKRKFEQMKQDRMTRYQGVN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGTITSAKVML-EGGRSKGFGFVCFSSPEEATKAV 350
>gi|260815191|ref|XP_002602357.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
gi|229287666|gb|EEN58369.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
Length = 620
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 75/147 (51%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ DITE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 14 LYVGDLDPDITEAMLYEKFSPAGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDTM 73
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ +KG+ ++I ++ + +++ +KNL + N+ + F FG+I V
Sbjct: 74 NFDTIKGKPMRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAIYDTFSAFGNILSCKVAQ 133
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE G+SK G V F + AA +A+ +
Sbjct: 134 DETGSSKGFGFVHFETQEAADEAMAKV 160
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 67/148 (45%), Gaps = 19/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I I + F +G + ++ K FGF+ + + AD+A AK++
Sbjct: 102 VFIKNLDKSIDNKAIYDTFSAFGNILSCKVAQDETGSSKGFGFVHFETQEAADEAMAKVN 161
Query: 171 GHVLKGRSLKI-RFAPIN-------------AAIKVKNLTSCVTNELLELAFGVFGDIER 216
G +L G+ + + RF P + I VKN ++ L F +G +
Sbjct: 162 GMMLNGKKVYVGRFVPRSERLAAMGEAQKRFTNIYVKNFGDKWDDDKLRDFFEKYGKVVS 221
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQA 244
A V+ D+ G+S+ G V + +A +A
Sbjct: 222 AKVMTDDMGHSRGFGFVSYEEPDSAGKA 249
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 93/236 (39%), Gaps = 50/236 (21%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKHNAD 163
+F N +Y+ N G ++ + + F+ YG+ + + M FGF+ + +A
Sbjct: 191 RFTN---IYVKNFGDKWDDDKLRDFFEKYGKVVSAKVMTDDMGHSRGFGFVSYEEPDSAG 247
Query: 164 KAKAKL-DGHVLKGR---------------SLKIRFAPIN---------AAIKVKNLTSC 198
KA ++ D V GR LK +F I + VKNL S
Sbjct: 248 KACEEMNDMEVDDGRRIYVGRAQKKAERQAELKAKFEKIKQERIQRYQGVNLYVKNLDST 307
Query: 199 VTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQS 258
+ E+L F FG I + V+ E G SK G V F+ A +A+ +
Sbjct: 308 IDEEILRKEFSQFGTITSSKVMT-ENGRSKGFGFVCFSSPEEATKAVTEM---------N 357
Query: 259 LRPVIVEPLELTDEIDGLSERTINKKT--PEFYKQRQVGPRFATVNSFEFEYGSRW 312
R V+ +PL + L++R ++K Y QR G R + GS +
Sbjct: 358 GRIVVSKPLYV-----ALAQRKEDRKAQLASQYMQRMAGMRMPAPQPNQMFQGSSY 408
>gi|221053642|ref|XP_002258195.1| RNA binding protein [Plasmodium knowlesi strain H]
gi|193808028|emb|CAQ38732.1| RNA binding protein, putative [Plasmodium knowlesi strain H]
Length = 360
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 69/144 (47%), Gaps = 14/144 (9%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFI------NKEKMFGFIRMDYKHNADKAKAK 168
+ ++G I +I+ +I+ F+ YG Q + I + + F F+ M + N DK
Sbjct: 118 KFFIGGIPQNISNKYLIDYFEKYGPVQNVVIAQDHETKRNRGFAFVTMSSQINKDKIL-- 175
Query: 169 LDGHVLKGRSLKIR------FAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD 222
+D H G+ + +R + I I V L T + LE F FG+I+ +++D
Sbjct: 176 IDTHEFNGKRVDVREENNTTPSDIQRKIFVGGLNYYWTKDTLESYFSAFGEIDVVQIVLD 235
Query: 223 ERGNSKCEGIVEFARKPAAAQALR 246
G S+C G V FA + + A+ L+
Sbjct: 236 SSGRSRCFGFVVFADESSVAKVLK 259
>gi|301790633|ref|XP_002930398.1| PREDICTED: polyadenylate-binding protein 4-like [Ailuropoda
melanoleuca]
Length = 644
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 76/146 (52%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G +++ ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+ + + R+ +N + +KNL + +E L
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAV 350
Score = 39.7 bits (91), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|148227710|ref|NP_001085351.1| embryonic polyadenylate-binding protein B [Xenopus laevis]
gi|82236619|sp|Q6GR16.1|EPABB_XENLA RecName: Full=Embryonic polyadenylate-binding protein B;
Short=Embryonic poly(A)-binding protein B; Short=ePAB-B;
Short=ePABP-B; AltName: Full=XePABP-B
gi|49257242|gb|AAH71118.1| MGC81363 protein [Xenopus laevis]
Length = 629
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 75/145 (51%), Gaps = 15/145 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + ++ +KNL + N+ L F FGDI V+
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALR 246
DE G S+ G V F + AA +A++
Sbjct: 133 DEYG-SRGYGFVHFETQEAANRAIQ 156
>gi|241948533|ref|XP_002416989.1| ARS consensus binding protein, putative; poly(A)-binding protein,
putative; polyadenylate tail-binding protein, putative;
polyadenylate-binding protein, cytoplasmic and nuclear,
putative [Candida dubliniensis CD36]
gi|223640327|emb|CAX44577.1| ARS consensus binding protein, putative [Candida dubliniensis CD36]
Length = 627
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 14/138 (10%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNAD--KA 165
N+ LY+G + + E + E+F P G+ + + ++ K G+ ++Y D KA
Sbjct: 49 NSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKA 108
Query: 166 KAKLDGHVLKGRSLKIRFAPINAA--------IKVKNLTSCVTNELLELAFGVFGDIERA 217
+L+ ++GR +I ++ + + I +KNL + N+ L F FG I
Sbjct: 109 IEELNYTPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSC 168
Query: 218 IVIVDERGNSKCEGIVEF 235
V DE G SKC G V +
Sbjct: 169 KVAADEFGQSKCFGFVHY 186
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 33/166 (19%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKA 165
AN +Y+ NI + +E +LF PYG+ +++ K+ K FGF+ + +A KA
Sbjct: 229 ANFTNIYVKNIDLNYSEESFEKLFAPYGKITSIYLEKDQDGKSKGFGFVNFENHDSAVKA 288
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+L+ + G+ + + ++ +N + VKNL +
Sbjct: 289 VEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAARLEKLAKYQGVN--LFVKNLDDAI 346
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+E LE F FG I A V+VD+ G SK G V F A +A+
Sbjct: 347 DSEKLEEEFKSFGTITSAKVMVDDAGKSKGFGFVCFTTPEEATKAI 392
>gi|255731137|ref|XP_002550493.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
gi|240132450|gb|EER32008.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
Length = 633
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 14/138 (10%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNAD--KA 165
N+ LY+G + + E + E+F P G+ + + ++ K G+ ++Y D KA
Sbjct: 47 NSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKFEDGEKA 106
Query: 166 KAKLDGHVLKGRSLKIRFAPINAA--------IKVKNLTSCVTNELLELAFGVFGDIERA 217
+L+ ++GR +I ++ + + I +KNL + N+ L F FG I
Sbjct: 107 IEELNYTPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSC 166
Query: 218 IVIVDERGNSKCEGIVEF 235
V DE G SKC G V +
Sbjct: 167 KVATDELGQSKCFGFVHY 184
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 29/164 (17%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKA 165
AN +Y+ NI TE + +LF PYG+ +++ K+ K FGF+ + A KA
Sbjct: 227 ANFTNIYVKNIDLAYTEEEFEKLFAPYGKITSIYLEKDQDGKSKGFGFVNFEEHDAAVKA 286
Query: 166 KAKLDGHVLKGRS---------------LKIRFAPIN---------AAIKVKNLTSCVTN 201
+L+ + G+ LK ++ I + VKNL + +
Sbjct: 287 VEELNDKEINGQKIYVGRAQKKRERMEELKKQYEAIRLEKLAKYQGVNLFVKNLDDSIDS 346
Query: 202 ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
E LE F FG I A V+VD+ G SK G V F A +A+
Sbjct: 347 EKLEEEFKPFGTITSAKVMVDDAGKSKGFGFVCFTTPEEATKAI 390
>gi|167527097|ref|XP_001747881.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773630|gb|EDQ87268.1| predicted protein [Monosiga brevicollis MX1]
Length = 553
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 79/165 (47%), Gaps = 15/165 (9%)
Query: 99 PPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGET-QELFINKEKM------F 151
P E Q+ + +F ++ LY+G++ D+ E ++ F +G T Q + + ++ + +
Sbjct: 14 PAVEEQSNESRFPHSASLYVGDLSKDVIEAELYNFFNSFGATVQSVRVCRDMVTQTSLGY 73
Query: 152 GFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAA--------IKVKNLTSCVTNEL 203
G++ +A K + LKG+ ++I F+ + I +KNL++ V N+
Sbjct: 74 GYVNFATPEDAAKVYEAANFEELKGQPVRIMFSERDPTKRRSGVGNIFIKNLSAEVDNKA 133
Query: 204 LELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
L F VFG + V+ D+ GNS+ V++ A Q + +
Sbjct: 134 LYDTFRVFGTVLSCRVLYDQEGNSRGIAFVQYEDAEVAKQVIAQV 178
>gi|334183839|ref|NP_177322.2| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|334183841|ref|NP_001185373.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|322510110|sp|Q05196.3|PABP5_ARATH RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|332197109|gb|AEE35230.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|332197110|gb|AEE35231.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
Length = 682
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 19/151 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQEL-----FINKEKMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + E F +G + + K +GF++ + + A A KL+
Sbjct: 148 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLN 207
Query: 171 GHVLKGRSLKI-RFA-------------PINAAIKVKNLTSCVTNELLELAFGVFGDIER 216
G +L + + + F P + VKNL +T++ L+ FG +GDI
Sbjct: 208 GMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISS 267
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQALRR 247
A+V+ D+ GNS+ G V F AAA A+ +
Sbjct: 268 AVVMKDQSGNSRSFGFVNFVSPEAAAVAVEK 298
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 67/149 (44%), Gaps = 13/149 (8%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKHNADKAKA 167
N LY+G++ + E+ +++LF L + ++ + ++ +A +A
Sbjct: 58 NSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAME 117
Query: 168 KLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIV 219
L+ ++ R ++I + + + + +KNL + + N+ L F FG I V
Sbjct: 118 SLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKV 177
Query: 220 IVDERGNSKCEGIVEFARKPAAAQALRRC 248
+D G SK G V+F ++ A A+ +
Sbjct: 178 AMDVVGRSKGYGFVQFEKEETAQAAIDKL 206
>gi|344228406|gb|EGV60292.1| hypothetical protein CANTEDRAFT_136776 [Candida tenuis ATCC 10573]
Length = 647
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 37/176 (21%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKA 165
AN +++ N+ + T+ ++ ELF YG ++ K+ K FGF+ D ++A KA
Sbjct: 229 ANFTNVFVKNLAPEYTDQELKELFSAYGPITSSYLEKDLEGKSKGFGFVNFDNHNDAVKA 288
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+L+ + G+ + + ++ +N + +KNL +
Sbjct: 289 VDELNNKEIAGQPIYVGRAQKKRERMEELRRQYEATKLEKLSKYQGVN--LFIKNLDDTI 346
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL----RRCAEG 251
+E LE F FG+I A V+VDE+G SK G V F+ A +A+ +R EG
Sbjct: 347 DSEKLENEFKPFGNITSARVMVDEQGKSKGFGFVCFSSPEEATKAITEMNQRMVEG 402
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 65/137 (47%), Gaps = 14/137 (10%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAK 166
+ LY+G + + E + E+F P G+ + + ++ + + ++ + ++A
Sbjct: 50 SASLYVGELNTSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFVKFDDGEQAI 109
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
L+ +++GR +I ++ + +++ +KNL + N+ L F FG I
Sbjct: 110 EDLNYSLIEGRPCRIMWSQRDPSLRRNGEGNIFIKNLHPAIDNKALHDTFSAFGRILSCK 169
Query: 219 VIVDERGNSKCEGIVEF 235
V DE GNSKC G V +
Sbjct: 170 VATDELGNSKCFGFVHY 186
>gi|357628251|gb|EHJ77641.1| poly A binding protein [Danaus plexippus]
Length = 601
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 73/147 (49%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKL 169
LY+G++ DITE + E F P G + + ++ + + ++ +A++A +
Sbjct: 4 LYVGDLHSDITEAMLFEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPSDAERALDTM 63
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++KGR ++I ++ + +++ +KNL + N+ + F FG+I V
Sbjct: 64 NFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKAIDNKAMYDTFSAFGNILSCKVAQ 123
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE G SK G V F + AA +++ +
Sbjct: 124 DENGASKGYGFVHFETEEAANKSIEKV 150
Score = 42.0 bits (97), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 22/154 (14%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + + F +G + ++ K +GF+ + + A+K+ K++
Sbjct: 92 VFIKNLDKAIDNKAMYDTFSAFGNILSCKVAQDENGASKGYGFVHFETEEAANKSIEKVN 151
Query: 171 GHVLKGRSLKI-RFAP-------------INAAIKVKNLTSCVTNELLELAFGVFGDIER 216
G +L G+ + + RF P + + VKN ++E+L F +G I
Sbjct: 152 GMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLRDMFEKYGRITS 211
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQALRRCAE 250
V+ E G+S+ G V F P AA+ R C E
Sbjct: 212 HKVMYKEDGSSRGFGFVAF-EDPDAAE--RACLE 242
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 31/160 (19%)
Query: 116 LYLGNIGGDITENDIIELFKPYGE-TQELFINKE----KMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D ++ + ++F+ YG T + KE + FGF+ + A++A +L+
Sbjct: 185 VYVKNFGEDFSDEMLRDMFEKYGRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACLELN 244
Query: 171 GHVL----------------KGRSLKIRFAPINAA---------IKVKNLTSCVTNELLE 205
G L + + LK +F + + + VKNL + +E L
Sbjct: 245 GKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLR 304
Query: 206 LAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 305 KEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 343
>gi|38541222|gb|AAH62832.1| Pabpc1a protein, partial [Danio rerio]
Length = 327
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ M G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETHEAAERAIEK 157
>gi|2935338|gb|AAC39368.1| poly(A) binding protein RB47 [Chlamydomonas reinhardtii]
Length = 623
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 18/165 (10%)
Query: 99 PPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFI 154
P + Q AN+ LY+G++ D+TE + ELF G + + ++ + G+
Sbjct: 9 PAATTQPASTPLANSS-LYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYA 67
Query: 155 RMDYK-----HNADKAKAKLDGHVLKGRSLKIRFAPINAA--------IKVKNLTSCVTN 201
++Y AD+A L+ HV+ G+ ++I ++ + + I +KNL +
Sbjct: 68 YVNYNSALDPQAADRAMETLNYHVVNGKPMRIMWSHRDPSARKSGVGNIFIKNLDKTIDA 127
Query: 202 ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALR 246
+ L F FG I V D G SK G V F + AA +A++
Sbjct: 128 KALHDTFSAFGKILSCKVATDANGVSKGYGFVHFEDQAAADRAIQ 172
>gi|41053728|ref|NP_957176.1| poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|37590406|gb|AAH59662.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|39645430|gb|AAH63948.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
Length = 634
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 76/146 (52%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
Score = 42.7 bits (99), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 70/161 (43%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ ++ + ++F YG + + K + FGF+ + +A +A +++
Sbjct: 193 VYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQRAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++D G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGTITSAKVMMDG-GRSKGFGFVCFSSPEEATKAV 350
Score = 38.9 bits (89), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + + A++A K++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + ++ L+ F +G+
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSI 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G S+ G V F R A +A+
Sbjct: 221 RVMTDENGKSRGFGFVSFERHEDAQRAV 248
>gi|398404546|ref|XP_003853739.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
gi|339473622|gb|EGP88715.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
Length = 763
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 71/147 (48%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKL 169
LY+G + +TE + ELF G+ + + ++ + + ++ + + ++A +L
Sbjct: 55 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNVAGDGERALEEL 114
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++KGR +I ++ + ++ +KNL + + N+ L F FG+I V
Sbjct: 115 NYTLIKGRPCRIMWSQRDPLLRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQ 174
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE NSK G V + AA QA++
Sbjct: 175 DENANSKGYGFVHYETAEAANQAIKNV 201
Score = 39.3 bits (90), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 59/144 (40%), Gaps = 34/144 (23%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN------KEKMFGFIRMDYKHNADK 164
AN +Y+ NI + T+N+ ELF+ YG+ + K + FGF+ +A K
Sbjct: 231 ANFTNIYVKNIDSETTDNEFRELFEKYGDITSASLAHDNESGKNRGFGFVNYIRHEDAYK 290
Query: 165 AKAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSC 198
A +L+ KG+ L + ++ +N + VKNL
Sbjct: 291 AVEELNDSDFKGQKLYVGRAQKKHEREEELRKQYEAARQEKSAKYTGVN--LYVKNLADE 348
Query: 199 VTNELLELAFGVFGDIERAIVIVD 222
+ ++ L F +G I A V+ D
Sbjct: 349 IDDDELRKVFEPYGAITSAKVMRD 372
>gi|296424904|ref|XP_002841985.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638239|emb|CAZ86176.1| unnamed protein product [Tuber melanosporum]
Length = 374
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 18/163 (11%)
Query: 99 PPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFI 154
P S P N + LY+G + +TE + ELF G + + ++ + G+
Sbjct: 42 PHSAPHNSH----TSASLYVGELEPSVTEAMLFELFSTIGNVASIRVCRDAVTRRSLGYS 97
Query: 155 RMDYKHNAD--KAKAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELL 204
++Y + AD +A +L+ ++KGR +I ++ + A++ +KNL + + N+ L
Sbjct: 98 YVNYNNTADGERALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKAL 157
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRR 247
F FG+I V DE NS+ G V + AA A++
Sbjct: 158 HDTFAAFGNILSCKVAQDEFSNSRGYGFVHYETAEAANNAIKH 200
>gi|308806325|ref|XP_003080474.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
gi|116058934|emb|CAL54641.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
Length = 504
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 72/144 (50%), Gaps = 14/144 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ +TE + E F G + + ++ + G+ ++++ ++D A A L
Sbjct: 34 LYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLITRRSLGYAYVNFQSSSDAAHAIDVL 93
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+ G+ +++ ++ + A++ +KNL + N+ L F FG I A V +
Sbjct: 94 NFQVINGKPIRVLYSQRDPAVRRSGVGNIFIKNLDKAIDNKALLDTFAQFGTITSAKVAM 153
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
D GNSK G V+F AA A+
Sbjct: 154 DSAGNSKGYGFVQFETAEAAQAAI 177
Score = 38.1 bits (87), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 65/168 (38%), Gaps = 32/168 (19%)
Query: 107 DIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHN 161
+ KF N +Y+ N+ ++++ + E F +G I K+ K FGF+ +
Sbjct: 206 EAKFNN---VYVKNLSENLSDEKLREKFAEHGAVTSCVIMKDEEGKSKGFGFVCFESPEG 262
Query: 162 ADKAKAKLDGHVLKGRS---------------LKIRFAP---------INAAIKVKNLTS 197
A A LDG+ ++ LK +F A + +KNL
Sbjct: 263 AASAVENLDGYTEDEKTWVVCRAQKKAEREAELKAKFEAERRERMEKMAGANLYIKNLEE 322
Query: 198 CVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+E L F FG I V+ D G S+ V F+ A +A+
Sbjct: 323 GTDDEKLRELFNEFGTITSCRVMRDASGASRGSAFVAFSSPDEATRAV 370
>gi|296470851|tpg|DAA12966.1| TPA: PABPC1L2B protein-like [Bos taurus]
Length = 489
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 75/144 (52%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ ++TE + E F P G + I ++K+ G+ ++Y+ D +A L
Sbjct: 293 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 352
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + +++ +KNL + N+ L F FG+I V
Sbjct: 353 NFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVAC 412
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE+G K G V F ++ +A +A+
Sbjct: 413 DEKG-PKGYGFVHFQKQESAERAI 435
>gi|26354649|dbj|BAC40951.1| unnamed protein product [Mus musculus]
Length = 636
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 77/146 (52%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+++
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIKK 157
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + + A++A K++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIKKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + +E L+ FG FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAV 248
Score = 42.7 bits (99), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + ELF +G + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
>gi|2665654|gb|AAB88449.1| polyadenylate binding protein [Petromyzon marinus]
Length = 630
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 76/146 (52%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVVKGKPIRIMWSQRDPSLRRSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAADKAIEK 157
Score = 41.6 bits (96), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 31/160 (19%)
Query: 116 LYLGNIGGDITENDIIELFKPY-GETQELFI-----NKEKMFGFIRMDYKHNADKAKAKL 169
+Y+ N G D+ + + E F+ Y G+T + + K K FGF+ + +A KA ++
Sbjct: 193 VYIKNFGDDMDDERLREYFEQYVGKTLSVKVMMDEGGKSKGFGFVSFERHEDAQKAVDEM 252
Query: 170 DGHVLKGRS---------------LKIRFAPIN---------AAIKVKNLTSCVTNELLE 205
+ L GR+ LK +F + + VKNL + +E L
Sbjct: 253 NTKELNGRAIYVGRAQKKAERQTELKRKFEMLKQERMSKYQGVNLYVKNLDDNINDERLW 312
Query: 206 LAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V+++E G S+ G V F+ A +A+
Sbjct: 313 KEFSPFGTITSAKVMMEE-GRSRGFGFVCFSSPEEATKAV 351
>gi|412991277|emb|CCO16122.1| predicted protein [Bathycoccus prasinos]
Length = 620
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 14/152 (9%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAK 166
A+N LY+G++ TE + ELF G + + ++ + G+ +++ D A+
Sbjct: 40 ASNTSLYVGDLESSATEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFSQAQDAAR 99
Query: 167 A--KLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIER 216
A L+ V+ G+ ++I ++ + I+ +KNL + L F FG+I
Sbjct: 100 AIDVLNFQVVNGKPIRILYSQRDPTIRKSGVGNIFIKNLDKDIDTVALRDTFAQFGNIVS 159
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
A V D +GNSK G ++F + AA +A+ +
Sbjct: 160 AKVATDGQGNSKGYGFIQFDTEAAAKEAIEKV 191
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 33/169 (19%)
Query: 107 DIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHN 161
+ KF N +++ N+G ++T+ ++ ++F+ +G + I+K+ K FGF+ + +
Sbjct: 216 ETKFNN---VFVKNLGDEVTDEELRKVFEGFGPVTSVMISKDEDGKSKGFGFVCYETPED 272
Query: 162 ADKAKAKLDGH---------VLKGRS-------LKIRFAP---------INAAIKVKNLT 196
A KA +LDG V + + LK +F A + +KNL
Sbjct: 273 ASKAVEELDGKHGEEDKKWVVCRAQKKAEREAELKAKFEAERRERMEKMAGANLYIKNLE 332
Query: 197 SCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+E L F FG I V+ D G S+ V F+ A +A+
Sbjct: 333 DGADDETLRELFKEFGTITSCRVMRDASGVSRGSAFVAFSSPEEATRAV 381
>gi|223590120|sp|A5DM21.2|PABP_PICGU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|190347872|gb|EDK40224.2| hypothetical protein PGUG_04322 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 14/134 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G + + E + E+F P G+ + + ++ K G+ +++ +AD ++A +L
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++ GR +I ++ + +++ +KNL + N+ L F FG I V
Sbjct: 120 NYSLVDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVAT 179
Query: 222 DERGNSKCEGIVEF 235
DE G SKC G V +
Sbjct: 180 DELGQSKCFGFVHY 193
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 33/166 (19%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKA 165
AN +Y+ N+ ++ E+FKP+G + + K + FGF+ + +A A
Sbjct: 236 ANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNA 295
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+++ + G+ L + ++ +N + VKNL +
Sbjct: 296 VKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVN--LFVKNLDDSI 353
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+E LE F FG I A V+VD+ G SK G V F+ A +A+
Sbjct: 354 DSEKLEEEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAI 399
>gi|281337402|gb|EFB12986.1| hypothetical protein PANDA_010319 [Ailuropoda melanoleuca]
Length = 731
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 73/154 (47%), Gaps = 5/154 (3%)
Query: 92 QGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMF 151
+ P +LPP +P+ + + R + D+T ++ +L Y E + F++K K
Sbjct: 30 RAPEEELPPLDPEEIRKRLEHTERQFRNR---DVTNQEVHDLLSDY-ELKYCFVDKYKGT 85
Query: 152 GFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVF 211
F+ + A+ A L+ R L ++ P +A + V NL T + E F
Sbjct: 86 AFVTLLNGEQAEAAINAFHQSQLRERELSVQLQPTDALLCVANLPPSFTQQQFEELVRPF 145
Query: 212 GDIERAIVIVDER-GNSKCEGIVEFARKPAAAQA 244
G +ER ++ ER G+SK G E+ +K +AA+A
Sbjct: 146 GSLERCFLVYSERTGHSKGYGFAEYMKKDSAARA 179
>gi|292615007|ref|XP_002662509.1| PREDICTED: ribonucleoprotein PTB-binding 2-like [Danio rerio]
Length = 816
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 70/137 (51%), Gaps = 2/137 (1%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168
+ +N ++ + N+ D T ++ E+ + Y E + F+++ K F+ + A A
Sbjct: 89 ELSNRRKILIKNLPQDTTNQEVHEILREY-ELKYCFVDRNKGTAFVTLLNGDQAQDAIRT 147
Query: 169 LDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERA-IVIVDERGNS 227
L ++GR + ++ P ++ + V NL VT + +G+IER +V D G+S
Sbjct: 148 LHQTSVRGRDINVQLQPTDSLLCVTNLPYTVTATQFQELVRSYGNIERCFLVYSDLTGHS 207
Query: 228 KCEGIVEFARKPAAAQA 244
K G VE+ +K +A++A
Sbjct: 208 KGYGFVEYMKKDSASRA 224
>gi|402079107|gb|EJT74372.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Gaeumannomyces graminis var. tritici R3-111a-1]
Length = 482
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 82/176 (46%), Gaps = 26/176 (14%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEK-----MFGFIRMDYKHNADKAKAKLD 170
LY+G + +TE+ + ++F+ G Q + I +K +GF+ D AD+A L+
Sbjct: 89 LYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKGFNYGFVEYDDPGAADRAMQTLN 148
Query: 171 GHVLKGRSLKIRFAPINA------------AIKVKNLTSCVTNELLELAFGVFGDIERAI 218
G + +++ +A +A I V +L++ V +E+L AF VFG + A
Sbjct: 149 GRRVHQSEIRVNWAYQSANTTTKEDTSNHFHIFVGDLSNEVNDEVLTQAFSVFGSVSEAR 208
Query: 219 VIVDER-GNSKCEGIVEFARKPAAAQALRRC--------AEGCFFLTQSLRPVIVE 265
V+ D + G S+ G V F +P A +AL A C + Q +P I +
Sbjct: 209 VMWDMKTGRSRGYGFVAFRDRPDAEKALSSMDGEWLGSRAIRCNWANQKGQPSIAQ 264
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 105 NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADK 164
N+ + C Y+GN+ T ND++ LF+ +G E ++ F FI+MD NA
Sbjct: 297 NQTPAYQTTC--YVGNLTPYTTANDLVPLFQNFGYVVESRFQSDRGFAFIKMDTHENATS 354
Query: 165 AKAKLDGHVLKGRSLKIRF 183
A L+G+ + GR LK +
Sbjct: 355 AICNLNGYNVNGRPLKCSW 373
>gi|64970|emb|CAA40721.1| polyA binding protein [Xenopus laevis]
Length = 633
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 75/144 (52%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE G SK G V F + AA +A+
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAI 155
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + E+F YG + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+S+ + R+ +N + VKNL + +E L
Sbjct: 253 GKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFLPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
Score = 42.0 bits (97), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + + A++A K++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + +E L+ FG +G
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D+ G SK G V F R A +A+
Sbjct: 221 KVMTDDNGKSKGFGFVSFERHEDAQKAV 248
>gi|146415246|ref|XP_001483593.1| hypothetical protein PGUG_04322 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 14/134 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G + + E + E+F P G+ + + ++ K G+ +++ +AD ++A +L
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++ GR +I ++ + +++ +KNL + N+ L F FG I V
Sbjct: 120 NYSLVDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVAT 179
Query: 222 DERGNSKCEGIVEF 235
DE G SKC G V +
Sbjct: 180 DELGQSKCFGFVHY 193
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 33/166 (19%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKA 165
AN +Y+ N+ ++ E+FKP+G + + K + FGF+ + +A A
Sbjct: 236 ANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNA 295
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+++ + G+ L + ++ +N + VKNL +
Sbjct: 296 VKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLLKYQGVN--LFVKNLDDSI 353
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+E LE F FG I A V+VD+ G SK G V F+ A +A+
Sbjct: 354 DSEKLEEEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAI 399
>gi|50547639|ref|XP_501289.1| YALI0C00539p [Yarrowia lipolytica]
gi|74689742|sp|Q6CDH3.1|PABP_YARLI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49647156|emb|CAG81584.1| YALI0C00539p [Yarrowia lipolytica CLIB122]
Length = 629
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 72/151 (47%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA 167
+N LY+G + +TE + E+F P G + + ++ + G+ +++ + AD +A
Sbjct: 44 DNASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRA 103
Query: 168 --KLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
+L+ +K R +I ++ + A++ +KNL + N+ L F FG I
Sbjct: 104 LEELNYSPIKERPCRIMWSQRDPALRKTGAGNIYIKNLDPAIDNKALHDTFSAFGQILSC 163
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
+ DE GNS+ G V + +A A++
Sbjct: 164 KIATDEFGNSRGFGFVHYESAESAESAIQHV 194
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 35/164 (21%)
Query: 114 CRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAK 168
+++ N+G +ITE + EL +GET + ++ K FGF+ DYK + D A
Sbjct: 227 TNVFIKNLGTEITEAEFEELVNKFGETSSVHLSTNDEGKPTGFGFV--DYKEH-DVAVKA 283
Query: 169 LDG---------HVLKGRSLK--------------IRFAPIN----AAIKVKNLTSCVTN 201
+DG + GR+ K R +N + +KNL + +
Sbjct: 284 IDGLSETEFKGNKLFAGRAKKKYERADELRKQYEASRLEKLNKYQGVNLYIKNLDDTIDD 343
Query: 202 ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ L F G I A V+VDE G SK G V ++ A +A+
Sbjct: 344 DKLRAEFAPHGTITSAKVMVDEAGKSKGFGFVCYSSPEEATKAV 387
>gi|345313526|ref|XP_001517538.2| PREDICTED: ribonucleoprotein PTB-binding 2 [Ornithorhynchus
anatinus]
Length = 642
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Query: 129 DIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINA 188
++ EL K Y E + ++++ K F+ + A A H L+G+ + ++F P +A
Sbjct: 52 EVHELLKDY-ELKYCYVDRNKRTAFVTLLNGEQAQSAIRTFHQHSLRGKDIVVQFQPTDA 110
Query: 189 AIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQA 244
+ V NL + +T + E +G+IER ++ E G SK G VE+ +K +AA+A
Sbjct: 111 LLCVTNLPASLTLQEFEELLRAYGNIERCFLVYSEVTGQSKGYGFVEYMKKDSAAKA 167
>gi|224093058|ref|XP_002309788.1| predicted protein [Populus trichocarpa]
gi|222852691|gb|EEE90238.1| predicted protein [Populus trichocarpa]
Length = 806
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 8/134 (5%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLK 175
L++GNI D+TE+D+++LF YG + + +GF+ +A +AK L G L+
Sbjct: 9 LWVGNISRDVTESDLMKLFAQYGSIDNVTTYTARSYGFVYFKRVEDAKQAKDALQGTSLR 68
Query: 176 GRSLKIRFA-PINAA--IKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGI 232
G + I FA P + + V + S V+ E LE F FG IE D+
Sbjct: 69 GNQIIIEFARPAKPSRHLWVGGIGSSVSEEWLEEEFLKFGKIEDFKFRRDQN-----TAY 123
Query: 233 VEFARKPAAAQALR 246
VE+ + A+QA++
Sbjct: 124 VEYFKLEDASQAMK 137
>gi|94730404|sp|P20965.3|PABPA_XENLA RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein 1-A; Short=xPABP1-A;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-A
gi|30353795|gb|AAH52100.1| Pabpc1 protein [Xenopus laevis]
Length = 633
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 75/144 (52%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE G SK G V F + AA +A+
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAI 155
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + E+F YG + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+S+ + R+ +N + VKNL + +E L
Sbjct: 253 GKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFLPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
Score = 42.0 bits (97), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + + A++A K++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + +E L+ FG +G
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D+ G SK G V F R A +A+
Sbjct: 221 KVMTDDNGKSKGFGFVSFERHEDAQKAV 248
>gi|15228191|ref|NP_188259.1| poly(A) binding protein 6 [Arabidopsis thaliana]
gi|2062166|gb|AAB63640.1| poly(A)-binding protein isolog [Arabidopsis thaliana]
gi|9279720|dbj|BAB01277.1| poly(A) binding protein-like [Arabidopsis thaliana]
gi|332642284|gb|AEE75805.1| poly(A) binding protein 6 [Arabidopsis thaliana]
Length = 537
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 18/146 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN------KEKMFGFIRMDYKHNADKAKAKL 169
LY+G++ D+TE D+I+ F + + K + +I D +A A +L
Sbjct: 23 LYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRL 82
Query: 170 DGHVLKGRSLKIRFAPINAA-----------IKVKNLTSCVTNELLELAFGVFGDIERAI 218
+ LKG++++I ++ + A + VKNL S +T+ LE F FG I +
Sbjct: 83 NHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSI-LSC 141
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQA 244
+V+E G SK G V+F + +A A
Sbjct: 142 KVVEENGQSKGFGFVQFDTEQSAVSA 167
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 65/159 (40%), Gaps = 28/159 (17%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKHNADKAKAKLD 170
+Y+ N+ +T++ + LF YG + + ++ M FGF+ NA KA L
Sbjct: 204 VYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLC 263
Query: 171 GHVLKGRSL---------------KIRFAPINAA--------IKVKNLTSCVTNELLELA 207
G L + L K +F+ A + VKNL+ + L
Sbjct: 264 GLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLREI 323
Query: 208 FGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALR 246
FG +G I A V+ E G SK G V F+ + QA R
Sbjct: 324 FGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKR 362
>gi|392558545|gb|EIW51732.1| polyadenylate binding protein [Trametes versicolor FP-101664 SS1]
Length = 631
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 74/150 (49%), Gaps = 14/150 (9%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--K 164
A + LY+G + +TE + E+F G + + ++ + G+ ++Y + AD +
Sbjct: 4 APSASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGER 63
Query: 165 AKAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIER 216
A +L+ ++KGR+ +I ++ + A++ +KNL + N+ L F FG++
Sbjct: 64 ALEQLNYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLS 123
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQALR 246
V DE G SK G V + AA A++
Sbjct: 124 CKVATDEHGRSKGYGFVHYETAEAAETAIK 153
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 29/159 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N+ ++T+ + ++LF+P+G + K + FGF+ D A A L
Sbjct: 190 IYVKNVDPEVTQEEFVQLFEPFGRITSAVLQVDDEGKSRGFGFVNFDTHEEAHAAVEALH 249
Query: 171 GHVLKGRSLKIRFAPINAA------------------------IKVKNLTSCVTNELLEL 206
+KGR L + A A + +KNL + +E L
Sbjct: 250 DSDVKGRKLFVARAQKKAEREEELRRSYEQAKMEKMSKYQGVNLYIKNLEDDIDDERLRG 309
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG+I A V+ DE+G SK G V F+ A +A+
Sbjct: 310 EFEPFGNITSAKVMRDEKGISKGFGFVCFSSPDEATKAV 348
>gi|148232824|ref|NP_001080204.1| polyadenylate-binding protein 1-A [Xenopus laevis]
gi|623598|gb|AAA60936.1| poly(A)-binding protein [Xenopus laevis]
Length = 633
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 75/144 (52%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE G SK G V F + AA +A+
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAI 155
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 30/159 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + E+F YG + + K K FGF+ + +A KA ++
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMY 252
Query: 171 GHVLKGRS---------------LKIRFAPIN---------AAIKVKNLTSCVTNELLEL 206
G + G+S LK +F +N + VKNL + +E L
Sbjct: 253 GKDMNGKSMFVGRAQKKVERQTELKRKFEQMNQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 313 EFLPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
Score = 41.6 bits (96), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + + A++A K++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + +E L+ FG +G
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D+ G SK G V F R A +A+
Sbjct: 221 KVMTDDNGKSKGFGFVSFERHEDAQKAV 248
>gi|118100597|ref|XP_417367.2| PREDICTED: embryonic polyadenylate-binding protein-like [Gallus
gallus]
Length = 632
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 75/145 (51%), Gaps = 15/145 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + ++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALR 246
DE G S+ G V F + AA +A++
Sbjct: 133 DENG-SRGHGFVHFETQEAATRAIQ 156
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 76/171 (44%), Gaps = 37/171 (21%)
Query: 106 KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKH 160
+ ++F N +Y+ N G D+ +N + E+F +G+T + + + K FGF+ +
Sbjct: 186 RAMEFTN---VYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHE 242
Query: 161 NADKAKAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKN 194
A KA A ++G + GR + + R+ +N + VKN
Sbjct: 243 EAQKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVN--LYVKN 300
Query: 195 LTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
L + +E L F +G I A V+ E G+SK G V F+ A +A+
Sbjct: 301 LDDGIDDERLRKEFSPYGTITSAKVMT-EGGHSKGFGFVCFSSPEEATKAV 350
>gi|224133226|ref|XP_002327991.1| predicted protein [Populus trichocarpa]
gi|222837400|gb|EEE75779.1| predicted protein [Populus trichocarpa]
Length = 934
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 62/112 (55%), Gaps = 5/112 (4%)
Query: 107 DIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAK 166
++K +NN L++GNI ++ ++D++ELF +G + + + F+ + +A +AK
Sbjct: 25 EVKESNN--LWVGNISREVADSDLMELFAQFGALDSVTTYSARSYAFVYFKHVEDAKQAK 82
Query: 167 AKLDGHVLKGRSLKIRFA-PINAA--IKVKNLTSCVTNELLELAFGVFGDIE 215
L G L+G +KI FA P + + V ++S V+ E LE F FG IE
Sbjct: 83 DALQGSSLRGNQIKIEFARPAKPSKYLWVGGISSSVSEERLEEEFLKFGKIE 134
>gi|365985359|ref|XP_003669512.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
gi|343768280|emb|CCD24269.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
Length = 585
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 73/148 (49%), Gaps = 14/148 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKA 165
++ LY+G++ ++E + ++F P G + + ++ + + ++ + KA
Sbjct: 38 SSASLYVGDLDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKKA 97
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
KL+ +KGR +I ++ + A++ +KNL S + N+ L F VFG+I +
Sbjct: 98 IEKLNYTPIKGRLCRIMWSQRDPALRKKGSANIFIKNLHSDIDNKALYDTFSVFGNILSS 157
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ DE G SK G V F AA +A+
Sbjct: 158 KIATDETGKSKGFGFVHFEDDTAAKEAI 185
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 33/166 (19%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKA 165
AN +Y+ NI + T+ + ELF YG+ + K K FGF+ + +A KA
Sbjct: 218 ANFTNIYVKNINLETTDEEFTELFSKYGKVLSAALEKTEDGKLKGFGFVDFENHEDAAKA 277
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+L+G K + L + ++ +N + +KNL +
Sbjct: 278 VEELNGSQFKDQELFVSRAQKKYERMQELKKQYEASRLEKMAKYQGVN--LFIKNLDDSI 335
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+E L+ F +G+I V+ E G S+ G V F+ A +A+
Sbjct: 336 DDEKLKEEFAPYGNITSVRVMRTENGKSRGFGFVCFSTPEEATKAI 381
>gi|158563873|sp|Q5B630.2|PABP_EMENI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|259481418|tpe|CBF74916.1| TPA: Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein)(PABP)(Polyadenylate
tail-binding protein)
[Source:UniProtKB/Swiss-Prot;Acc:Q5B630] [Aspergillus
nidulans FGSC A4]
Length = 732
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 83/185 (44%), Gaps = 25/185 (13%)
Query: 78 GGGDRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPY 137
G D ++ A++ P P ++ LY+G + +TE + ELF
Sbjct: 17 GTPDNAPAPEVTAVEAPATTSQP-----------HSASLYVGELDPSVTEAMLYELFSSI 65
Query: 138 GETQELFINKEKM----FGFIRMDYKHNA--DKAKAKLDGHVLKGRSLKIRFAPINAAIK 191
G+ + + ++ + G+ ++Y A ++A +L+ ++KG+ +I ++ + A++
Sbjct: 66 GQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPALR 125
Query: 192 --------VKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQ 243
+KNL S + N+ L F FG+I V DE G SK G V + AA
Sbjct: 126 KTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANN 185
Query: 244 ALRRC 248
A++
Sbjct: 186 AIKHV 190
>gi|341900148|gb|EGT56083.1| hypothetical protein CAEBREN_04295 [Caenorhabditis brenneri]
Length = 649
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 82/178 (46%), Gaps = 18/178 (10%)
Query: 89 MAIQGPTLDLP----PSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELF 144
M P + +P P QN LY+G++ D+ E+ + E F G +
Sbjct: 3 MNAATPAVAVPGAGAPQPGQNPTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIR 62
Query: 145 INKEKM----FGFIRMDYKHNADKAKA--KLDGHVLKGRSLKIRFAPINAAIK------- 191
+ ++ G+ ++++ AD +A ++ L G+ ++I ++ + A++
Sbjct: 63 VCRDNATRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNI 122
Query: 192 -VKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
+KNL + N+ + F +FG+I V +DE G+SK G V F + AA A+++
Sbjct: 123 FIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEEGSSKGYGFVHFETEEAAQNAIQKV 180
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 66/167 (39%), Gaps = 33/167 (19%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADK 164
K+ N +Y+ N G + + +LF YG + K K FGF+ A+
Sbjct: 211 KYTN---VYVKNFGDHYNKESLEKLFAKYGTITSCDVMTSDGKSKGFGFVAFAEPEEAEA 267
Query: 165 AKAKLDGHVLKGRSLKI----------RFAPIN----------------AAIKVKNLTSC 198
A L+ ++G LK+ R A + + VKNL
Sbjct: 268 AVQALNDSPVEGSDLKLHVCRAQKKSERHAELKKKHEQHKVERMQKYQGVNLYVKNLDES 327
Query: 199 VTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
V +E L+ F FG+I A V+ DE G SK G V F + A A+
Sbjct: 328 VDDEALKKQFESFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAV 374
>gi|344236474|gb|EGV92577.1| Polyadenylate-binding protein 4 [Cricetulus griseus]
Length = 524
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 4 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 63
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 64 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 123
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 124 DENG-SKGYAFVHFETQEAADKAIEK 148
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 75/161 (46%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ ++++ ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 184 VYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 243
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+++ + R+ +N + +KNL + +E L
Sbjct: 244 GKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 301
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 302 RKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAV 341
>gi|224078006|ref|XP_002190593.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Taeniopygia guttata]
Length = 629
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 73/144 (50%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + ++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE G S+ G V F AA +A+
Sbjct: 133 DENG-SRGYGFVHFETHEAATRAI 155
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 37/171 (21%)
Query: 106 KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKH 160
+ I+F N +Y+ N G D+ ++ + E+F +G+T + + + K FGF+ +
Sbjct: 186 RAIEFTN---VYIKNFGDDMDDDRLREIFSRFGKTLSVKVMMDNNGRSKGFGFVNFEKHE 242
Query: 161 NADKAKAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKN 194
A KA A ++G + GR L + R+ +N + VKN
Sbjct: 243 EAQKAVADMNGKEINGRLLYVGRAQKRLERQSELKRKFEQMKQERVNRYQGVN--LYVKN 300
Query: 195 LTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
L + +E L F +G I A V+ E G SK G V F+ A +A+
Sbjct: 301 LDDGIDDERLRKEFSPYGTITSAKVMT-EGGRSKGFGFVCFSSPEEATKAV 350
>gi|169853086|ref|XP_001833224.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
gi|116505602|gb|EAU88497.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
Length = 681
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 71/164 (43%), Gaps = 29/164 (17%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKA 165
A LY+ N+ ++T+++ IELFK YG I+ K K FGF+ + A KA
Sbjct: 227 AQFTNLYVKNLDPEVTQDEFIELFKKYGNVTSAVISVDEEGKSKGFGFVNFETHDEAQKA 286
Query: 166 KAKLDGHVLKGRSLKIRFAPINAA------------------------IKVKNLTSCVTN 201
+L+ LKG+ L + A A + +KNL V +
Sbjct: 287 VDELNDFELKGKKLFVSRAQKKAEREEELRRSYEQAKLEKLSKYQGVNLYIKNLEDDVDD 346
Query: 202 ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ L F FG I V+ DE+G SK G V F+ A +A+
Sbjct: 347 DKLRAEFEPFGTITSCKVMRDEKGQSKGFGFVCFSSPDEATKAV 390
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 70/148 (47%), Gaps = 14/148 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KAK 166
+ LY+G + +TE + E+F G + + ++ + G+ ++Y + AD +A
Sbjct: 48 SASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 107
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
+L+ ++K R +I ++ + A++ +KNL + N+ L F FG +
Sbjct: 108 EQLNYSLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFGTVLSCK 167
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALR 246
V DE G SK G V + AA A++
Sbjct: 168 VATDETGRSKGYGFVHYETAEAAENAIK 195
>gi|242077714|ref|XP_002448793.1| hypothetical protein SORBIDRAFT_06g033290 [Sorghum bicolor]
gi|241939976|gb|EES13121.1| hypothetical protein SORBIDRAFT_06g033290 [Sorghum bicolor]
Length = 1076
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 43/184 (23%)
Query: 99 PPSEP-----QNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKE 148
PPS P N+ +K + LY+ NI + + ++ELF P+G + N
Sbjct: 500 PPSSPVESHANNRTLKEIDMSNLYVCNIPSSMNKAKLVELFLPFGRITHAMVVEQSNNSS 559
Query: 149 KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA-----------------PINAAIK 191
K +GF++ H A +A A ++G +++G ++ +R A INA+ +
Sbjct: 560 KGYGFVKFADSHCAAEAVAMMNGALIEGETISVRVAGLSPSVSSSVSQHSPHSEINASPE 619
Query: 192 VKNLTSCVTN--------ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQ 243
+ N VTN +L+ L F FG I+R ++ + V +A +AA+
Sbjct: 620 INNCRLYVTNLPQTMSADKLVSL-FMPFGQIDRVVMYAE-------YSFVLYADINSAAK 671
Query: 244 ALRR 247
AL+
Sbjct: 672 ALKH 675
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 79/169 (46%), Gaps = 25/169 (14%)
Query: 101 SEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFI 154
SE ++ K + +Y+ N+ + + ++ LF PYG+ + + K +GF+
Sbjct: 410 SETDHQLTKEVDMSNVYVQNLPLLMNTDKLLNLFLPYGKVTSAKVAMDYTSGISKGYGFV 469
Query: 155 RMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAA------------IKVKNLTSCVT-- 200
+ H+A A +L+G +++GR + +R P ++ I + NL C
Sbjct: 470 KFSDPHDAAHAVIELNGCLVEGRKILVRVRPPSSPVESHANNRTLKEIDMSNLYVCNIPS 529
Query: 201 ----NELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+L+EL F FG I A+V+ +SK G V+FA AA+A+
Sbjct: 530 SMNKAKLVEL-FLPFGRITHAMVVEQSNNSSKGYGFVKFADSHCAAEAV 577
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 24/128 (18%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDG 171
NNCRLY+ N+ ++ + ++ LF P+G+ + + E + F+ ++A KA +DG
Sbjct: 621 NNCRLYVTNLPQTMSADKLVSLFMPFGQIDRVVMYAE--YSFVLYADINSAAKALKHMDG 678
Query: 172 HVLKGRSLKIRFA---PINAA--------------IKVKNL-----TSCVTNELLELAFG 209
++++G+ L ++ + P NAA I + NL S VT E L F
Sbjct: 679 YLIEGKRLVVKGSEPLPANAAQSACSQSGSKLVKEIDMANLYVGRVPSAVTCEQLVQIFC 738
Query: 210 VFGDIERA 217
++G+I +A
Sbjct: 739 LYGEIVQA 746
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 87/183 (47%), Gaps = 34/183 (18%)
Query: 103 PQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRM 156
P + K + +LY+ N+ + E+ + +LF PYG+ + + ++ K +GF+R
Sbjct: 308 PSSGSTKEMDMSKLYVCNLPLLLHEDKLHDLFVPYGQVTSVKVMRDHATGLSKGYGFVRY 367
Query: 157 DYKHNADKAKAKLDGHVLKGRSLKIRFAPINAA------------------------IKV 192
+A A +L+GH+++G+ +++R A ++++ + V
Sbjct: 368 SDPQHAAHAIFQLNGHLIEGKKMEVRVAAVSSSGSNTSVQAISETDHQLTKEVDMSNVYV 427
Query: 193 KNLTSCV-TNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAE 250
+NL + T++LL L F +G + A V +D G SK G V+F+ AA A+
Sbjct: 428 QNLPLLMNTDKLLNL-FLPYGKVTSAKVAMDYTSGISKGYGFVKFSDPHDAAHAVIEL-N 485
Query: 251 GCF 253
GC
Sbjct: 486 GCL 488
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 17/155 (10%)
Query: 108 IKFANNCRLYLGNIGGDITENDIIELFKPYGE------TQELFINKEKMFGFIRMDYKHN 161
+K N L++GN+ + + +IELF P+G + F K +GF++
Sbjct: 223 LKEGNGTNLFVGNLPPSLASHKLIELFLPFGRIVKSRVVDDCFTGSSKGYGFVQYSDPRY 282
Query: 162 ADKAKAKLDGHVLKGRSLKIRF--APINAAIK--------VKNLTSCVTNELLELAFGVF 211
A +A ++G +++GR L++R AP + + K V NL + + L F +
Sbjct: 283 AAEAIKHMNGRMVEGRMLEVRLAGAPSSGSTKEMDMSKLYVCNLPLLLHEDKLHDLFVPY 342
Query: 212 GDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQAL 245
G + V+ D G SK G V ++ AA A+
Sbjct: 343 GQVTSVKVMRDHATGLSKGYGFVRYSDPQHAAHAI 377
Score = 45.1 bits (105), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 76/171 (44%), Gaps = 37/171 (21%)
Query: 106 KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM---FGFIRMDYKHNA 162
K+I AN LY+G + +T ++++F YGE + +K +G IR +A
Sbjct: 712 KEIDMAN---LYVGRVPSAVTCEQLVQIFCLYGE----IVQAKKFDAGYGMIRYANASSA 764
Query: 163 DKAKAKLDGHVLKGRSLKIRFAPINA-------------------AIKVKNL------TS 197
A LDG+ + G +L +R A + A I + NL
Sbjct: 765 AAAIDHLDGYQIGGSTLVVRVAGLPAESDVATFARTPQTPGNEHRQIDMTNLYVGYLPPY 824
Query: 198 CVTNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQALRR 247
T++L+EL F G I +A V+VD+ G SK G V FA +AA A+
Sbjct: 825 VTTDKLIEL-FLPCGQITQAKVVVDKFTGVSKGFGFVRFADAYSAATAITH 874
>gi|67527154|ref|XP_661604.1| hypothetical protein AN4000.2 [Aspergillus nidulans FGSC A4]
gi|40740281|gb|EAA59471.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 711
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 85/185 (45%), Gaps = 25/185 (13%)
Query: 78 GGGDRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPY 137
G D ++ A++ P S+P ++ LY+G + +TE + ELF
Sbjct: 17 GTPDNAPAPEVTAVEAPATT---SQP--------HSASLYVGELDPSVTEAMLYELFSSI 65
Query: 138 GETQELFINKEKM----FGFIRMDYKHNA--DKAKAKLDGHVLKGRSLKIRFAPINAAIK 191
G+ + + ++ + G+ ++Y A ++A +L+ ++KG+ +I ++ + A++
Sbjct: 66 GQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPALR 125
Query: 192 --------VKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQ 243
+KNL S + N+ L F FG+I V DE G SK G V + AA
Sbjct: 126 KTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANN 185
Query: 244 ALRRC 248
A++
Sbjct: 186 AIKHV 190
>gi|148698436|gb|EDL30383.1| mCG5546, isoform CRA_b [Mus musculus]
Length = 580
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 30 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 89
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 90 NFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 149
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 150 DENG-SKGYAFVHFETQEAADKAIEK 174
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 75/161 (46%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + ++ ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 210 VYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMN 269
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+++ + R+ +N + +KNL + +E L
Sbjct: 270 GKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 327
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 328 RREFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 367
>gi|52346030|ref|NP_001005062.1| embryonic polyadenylate-binding protein [Xenopus (Silurana)
tropicalis]
gi|82235830|sp|Q6DEY7.1|EPAB_XENTR RecName: Full=Embryonic polyadenylate-binding protein;
Short=Embryonic poly(A)-binding protein; Short=ePABP
gi|49899948|gb|AAH76956.1| MGC89376 protein [Xenopus (Silurana) tropicalis]
Length = 629
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 75/145 (51%), Gaps = 15/145 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + ++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALR 246
DE G S+ G V F + AA +A++
Sbjct: 133 DEHG-SRGYGFVHFETQEAANRAIQ 156
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 33/169 (19%)
Query: 106 KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKH 160
K ++F N +Y+ N G D+ + + E+F +G T + + + + FGF+
Sbjct: 186 KVMEFTN---VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHE 242
Query: 161 NADKAKAKLDGHVLKGR---------------SLKIRFAPIN---------AAIKVKNLT 196
A KA ++++G + GR LK +F I + VKNL
Sbjct: 243 EAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLD 302
Query: 197 SCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ ++ L F +G I A V+ E G+SK G V F+ A +A+
Sbjct: 303 DGIDDDRLRKEFSPYGTITSAKVMT-EGGHSKGFGFVCFSSPEEATKAV 350
>gi|149023880|gb|EDL80377.1| rCG31475, isoform CRA_c [Rattus norvegicus]
Length = 630
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAANKAIEK 157
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 75/161 (46%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + ++ ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+S+ + R+ +N + +KNL + +E L
Sbjct: 253 GKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
>gi|357473075|ref|XP_003606822.1| Flowering time control protein FPA [Medicago truncatula]
gi|355507877|gb|AES89019.1| Flowering time control protein FPA [Medicago truncatula]
Length = 973
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 8/134 (5%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLK 175
LY+ N+ D+T++D+++LF YG + + + F+ +A AK L G +
Sbjct: 29 LYVANLSPDVTDSDLMDLFVQYGALDSVTSYSARNYAFVFFKRIDDAKAAKNALQGFNFR 88
Query: 176 GRSLKIRFAPINAAIK---VKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGI 232
G SL+I FA K V ++ VT E LE F FG +E D N+ C
Sbjct: 89 GNSLRIEFARPAKTCKQLWVGGISPAVTKEDLEADFRKFGKVEDFKFFRDR--NTAC--- 143
Query: 233 VEFARKPAAAQALR 246
VEF A QA++
Sbjct: 144 VEFFNLDDAIQAMK 157
>gi|432865704|ref|XP_004070572.1| PREDICTED: embryonic polyadenylate-binding protein-like [Oryzias
latipes]
Length = 624
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 76/145 (52%), Gaps = 17/145 (11%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKAKLDG 171
LY+G++ D+TE + + F P G + + ++ + G+ ++++ AD A+ LD
Sbjct: 13 LYVGDLHPDVTEAMLYQKFSPAGPIVSIRVCRDIITRRSLGYAYINFQQPAD-AECALDT 71
Query: 172 H---VLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVI 220
V+KGR ++I ++ + A++ +KN+ + N+ L F FG+I V+
Sbjct: 72 MNYDVIKGRPIRIMWSQRDPALRKSGVGNIFIKNIDDSIDNKALYDTFSAFGNILSCKVV 131
Query: 221 VDERGNSKCEGIVEFARKPAAAQAL 245
DERG SK G V F + AA +A+
Sbjct: 132 CDERG-SKGYGFVHFETQEAANRAI 155
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 64/152 (42%), Gaps = 26/152 (17%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKAKLDG 171
+++ NI I + + F +G + + K +GF+ + + A++A ++G
Sbjct: 101 IFIKNIDDSIDNKALYDTFSAFGNILSCKVVCDERGSKGYGFVHFETQEAANRAIETMNG 160
Query: 172 HVLKGRSLKI------------------RFAPINAAIKVKNLTSCVTNELLELAFGVFGD 213
+L R + + +F I +KN +T+E L+ AF FG
Sbjct: 161 MLLNDRKVFVGHFKSRKEREVEFGTKVMKFT----NIYIKNFGDNLTDEKLKEAFSAFGK 216
Query: 214 IERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE+G S+ G V +A A +A+
Sbjct: 217 TLSVRVMRDEKGRSRGFGFVNYAHHEDAQKAV 248
>gi|326931817|ref|XP_003212020.1| PREDICTED: embryonic polyadenylate-binding protein-like [Meleagris
gallopavo]
Length = 633
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 74/144 (51%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + ++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE G S+ G V F + AA +A+
Sbjct: 133 DENG-SRGHGFVHFETQEAATRAI 155
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 76/171 (44%), Gaps = 37/171 (21%)
Query: 106 KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKH 160
+ ++F N +Y+ N G D+ +N + E+F +G+T + + + K FGF+ +
Sbjct: 186 RAMEFTN---VYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDNTGRSKGFGFVNFEKHE 242
Query: 161 NADKAKAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKN 194
A KA A ++G + GR + + R+ +N + VKN
Sbjct: 243 EAQKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVN--LYVKN 300
Query: 195 LTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
L + +E L F +G I A V+ E G+SK G V F+ A +A+
Sbjct: 301 LDDGIDDERLRKEFSPYGTITSAKVMT-EGGHSKGFGFVCFSSPEEATKAV 350
>gi|395548760|ref|XP_003775245.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 730
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 78/146 (53%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKAKLDG 171
LY+G++ ++TE + E F P G + + ++ + G+ ++++H AD + D
Sbjct: 112 LYVGDLHHEVTEAMLYEKFSPAGPILSIRVCRDAVTHRSLGYAYVNFQHLADAERVMTDM 171
Query: 172 --HVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+++KG+ +++ ++ + +++ VKNL + N+ L AF FG+I VI
Sbjct: 172 NLYIIKGKPVRLMWSQRDPSLRKSGIGNVFVKNLEKSINNKSLYDAFSSFGNILSCKVIT 231
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
D+ G SK G V F + +A +A+++
Sbjct: 232 DDNG-SKGYGFVHFEHRESAERAIQK 256
Score = 41.6 bits (96), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ E+ + ++F+ +G T + + ++ K FGF+ +A A ++
Sbjct: 292 VYIKNFGEDMDEDRLSKIFEKFGPTLSVKVMRDDCGRSKGFGFVNFQKHEDAQNAIDNMN 351
Query: 171 GHVLKGRSLK--------------------------IRFAPINAAIKVKNLTSCVTNELL 204
G L GR + +R+ +N + +KNL + +E L
Sbjct: 352 GKELNGRQIYAGRAQKKLERQTQLQRHFEQLKQNRIVRYQGVN--LYIKNLDDDIDDENL 409
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V+++ G SK G V F+ A A+
Sbjct: 410 RKEFSSFGTITSAKVMMNN-GRSKGFGFVCFSAPEEATTAV 449
>gi|401409876|ref|XP_003884386.1| hypothetical protein NCLIV_047860 [Neospora caninum Liverpool]
gi|325118804|emb|CBZ54355.1| hypothetical protein NCLIV_047860 [Neospora caninum Liverpool]
Length = 763
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 76/147 (51%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYK--HNADKAKAKL 169
LY+G++ D+TE + E+F G + + ++ + G+ ++Y+ +A+++ L
Sbjct: 86 LYVGDLHQDVTEAMLFEVFNSVGPVTSIRVCRDTVTRRSLGYAYVNYQGIQDAERSLDTL 145
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ +I + + +++ VKNL + N+ L F +FG+I V V
Sbjct: 146 NYTVIKGQPCRIMWCHRDPSLRKSGNGNIFVKNLDKNIDNKALYDTFSLFGNILSCKVAV 205
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE G+SK G V + + +A A+ +
Sbjct: 206 DENGHSKGYGFVHYENEESARSAIDKV 232
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 182 RFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAA 241
RF +N + +KN+ + +E L F FG I A V+ DERG S+C G V F A
Sbjct: 385 RFQGVN--LYIKNMDDSIDDEKLRQLFEPFGSITSAKVMRDERGVSRCFGFVCFMSPEEA 442
Query: 242 AQAL 245
+A+
Sbjct: 443 TKAV 446
>gi|1616770|gb|AAB16848.1| putative poly(A)-binding protein FabM [Emericella nidulans]
Length = 705
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 85/185 (45%), Gaps = 25/185 (13%)
Query: 78 GGGDRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPY 137
G D ++ A++ P S+P ++ LY+G + +TE + ELF
Sbjct: 17 GTPDNAPAPEVTAVEAPATT---SQP--------HSASLYVGELDPSVTEAMLYELFSSI 65
Query: 138 GETQELFINKEKM----FGFIRMDYKHNA--DKAKAKLDGHVLKGRSLKIRFAPINAAIK 191
G+ + + ++ + G+ ++Y A ++A +L+ ++KG+ +I ++ + A++
Sbjct: 66 GQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPALR 125
Query: 192 --------VKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQ 243
+KNL S + N+ L F FG+I V DE G SK G V + AA
Sbjct: 126 KTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANN 185
Query: 244 ALRRC 248
A++
Sbjct: 186 AIKHV 190
>gi|41388837|gb|AAH65540.1| PABPC4 protein [Homo sapiens]
Length = 631
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 76/146 (52%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N++L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKVLYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 30/159 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGR---------------SLKIRFAPIN---------AAIKVKNLTSCVTNELLEL 206
G + G+ LK +F + + +KNL + +E L
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 313 EFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
Score = 38.5 bits (88), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKVLYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPNGKSKGFGFVSYEKHEDANKAV 248
>gi|327283838|ref|XP_003226647.1| PREDICTED: polyadenylate-binding protein 1-like [Anolis
carolinensis]
Length = 636
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 76/146 (52%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + + A++A K++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + +E L+ FG FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAV 248
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + ELF +G + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
>gi|301772030|ref|XP_002921420.1| PREDICTED: ribonucleoprotein PTB-binding 1-like [Ailuropoda
melanoleuca]
Length = 706
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 73/154 (47%), Gaps = 5/154 (3%)
Query: 92 QGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMF 151
+ P +LPP +P+ + + R + D+T ++ +L Y E + F++K K
Sbjct: 30 RAPEEELPPLDPEEIRKRLEHTERQFRNR---DVTNQEVHDLLSDY-ELKYCFVDKYKGT 85
Query: 152 GFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVF 211
F+ + A+ A L+ R L ++ P +A + V NL T + E F
Sbjct: 86 AFVTLLNGEQAEAAINAFHQSQLRERELSVQLQPTDALLCVANLPPSFTQQQFEELVRPF 145
Query: 212 GDIERAIVIVDER-GNSKCEGIVEFARKPAAAQA 244
G +ER ++ ER G+SK G E+ +K +AA+A
Sbjct: 146 GSLERCFLVYSERTGHSKGYGFAEYMKKDSAARA 179
>gi|74212334|dbj|BAE30919.1| unnamed protein product [Mus musculus]
Length = 636
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 76/146 (52%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
Score = 42.7 bits (99), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + ELF +G + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
Score = 42.7 bits (99), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + + A++A K++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + +E L+ FG FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDEGGKSKGFGFVSFERHEDAQKAV 248
>gi|224046575|ref|XP_002200268.1| PREDICTED: polyadenylate-binding protein 1 [Taeniopygia guttata]
Length = 637
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 76/146 (52%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + + A++A K++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + +E L+ FG FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAV 248
Score = 42.7 bits (99), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + ELF +G + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
>gi|387017716|gb|AFJ50976.1| Polyadenylate-binding protein 1-like [Crotalus adamanteus]
Length = 636
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 76/146 (52%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + + A++A K++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + +E L+ FG FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAV 248
Score = 42.7 bits (99), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + ELF +G + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
>gi|383417507|gb|AFH31967.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|383417511|gb|AFH31969.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 459
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 76/146 (52%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + + A++A K++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + +E L+ FG FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAV 248
Score = 42.0 bits (97), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + +LF +G + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
>gi|71896197|ref|NP_001026768.1| polyadenylate-binding protein 1 [Gallus gallus]
gi|53130422|emb|CAG31540.1| hypothetical protein RCJMB04_7l20 [Gallus gallus]
Length = 637
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 76/146 (52%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + + A++A K++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + +E L+ FG FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAV 248
Score = 42.7 bits (99), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + ELF +G + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKELNGKQIYVGRAQKRVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
>gi|430814566|emb|CCJ28224.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 685
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 78/160 (48%), Gaps = 19/160 (11%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--- 163
+N+ LY+G + +TE + ELF G + + ++ + G+ +++ +++D
Sbjct: 68 SNSASLYVGELDPSVTEAMLFELFNNIGAVASIRVCRDAVTRRSLGYAYVNFHNSSDVNL 127
Query: 164 ----KAKAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVF 211
+A +L+ ++KG+ +I ++ + +++ +KNL + + N+ L F F
Sbjct: 128 LTGERALDELNYTLIKGKPCRIMWSQRDPSLRKTGTGNVFIKNLDASIDNKALHDTFTAF 187
Query: 212 GDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEG 251
G I V VDE GNSK G V + +A A++ G
Sbjct: 188 GSILSCKVAVDELGNSKGYGFVHYKTSESAEAAIKHVYVG 227
>gi|19705459|ref|NP_599180.1| polyadenylate-binding protein 1 [Rattus norvegicus]
gi|47605941|sp|Q9EPH8.1|PABP1_RAT RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|12188891|emb|CAC21554.1| poly(A) binding protein [Rattus norvegicus]
gi|52789215|gb|AAH83176.1| Poly(A) binding protein, cytoplasmic 1 [Rattus norvegicus]
gi|149066519|gb|EDM16392.1| rCG60104 [Rattus norvegicus]
Length = 636
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 76/146 (52%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + + A++A K++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + +E L+ FG FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAV 248
Score = 42.7 bits (99), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + ELF +G + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
>gi|53754|emb|CAA46522.1| poly(A) binding protein [Mus musculus]
Length = 636
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 76/146 (52%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + + A++A K++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + +E L+ FG FG
Sbjct: 161 MLLNDRKVFVGRFKSQKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAV 248
Score = 42.7 bits (99), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + ELF +G + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
>gi|119612224|gb|EAW91818.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_d [Homo
sapiens]
Length = 472
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 76/146 (52%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + + A++A K++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + +E L+ FG FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAV 248
Score = 42.0 bits (97), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + +LF +G + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
>gi|31560656|ref|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus]
gi|341941223|sp|P29341.2|PABP1_MOUSE RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|13278026|gb|AAH03870.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|15029950|gb|AAH11207.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|18606321|gb|AAH23145.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|26336853|dbj|BAC32110.1| unnamed protein product [Mus musculus]
gi|29145018|gb|AAH46233.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|74144576|dbj|BAE36120.1| unnamed protein product [Mus musculus]
gi|74145579|dbj|BAE36203.1| unnamed protein product [Mus musculus]
gi|74179929|dbj|BAE36522.1| unnamed protein product [Mus musculus]
gi|74198265|dbj|BAE35302.1| unnamed protein product [Mus musculus]
gi|74198320|dbj|BAE35327.1| unnamed protein product [Mus musculus]
gi|74214225|dbj|BAE40360.1| unnamed protein product [Mus musculus]
gi|74223327|dbj|BAE21553.1| unnamed protein product [Mus musculus]
gi|148676871|gb|EDL08818.1| poly A binding protein, cytoplasmic 1 [Mus musculus]
Length = 636
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 76/146 (52%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + + A++A K++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + +E L+ FG FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAV 248
Score = 42.7 bits (99), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + ELF +G + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
>gi|406602185|emb|CCH46236.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Wickerhamomyces ciferrii]
Length = 652
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 17/158 (10%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNA---DK 164
LY+G + I E + E+F P G+ + + ++ + G+ ++Y HN +K
Sbjct: 58 TTASLYVGELEPSINEALLFEIFSPIGQVSSIRVCRDALTKRSLGYAYVNY-HNVKDGEK 116
Query: 165 AKAKLDGHVLKGRSLKIRFAPINAA--------IKVKNLTSCVTNELLELAFGVFGDIER 216
A +L+ V+KG+ ++I ++ + A + +KNL + N+ L F FG I
Sbjct: 117 AIDELNYSVVKGQPIRIMWSQRDPAKRRNGEGNVFIKNLHPAIDNKALHDTFSAFGRILS 176
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFF 254
V D G SK G V F P AAQA G
Sbjct: 177 CKVATDNFGQSKGFGFVHF-ESPEAAQAAIENVNGMLL 213
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 29/161 (18%)
Query: 114 CRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAK 168
+Y+ NI + +E ++ ELF P+G ++ K+ + F F+ + A K+
Sbjct: 241 TNVYVKNIDLEASEEEVKELFTPFGTVTSFYLEKDAEGKSRGFAFVNYEEHEAAVKSIES 300
Query: 169 LDGHVLKGRSLKI-----------------RFAPINAAIK-------VKNLTSCVTNELL 204
L+ KG+ L + A I K VKNL + +E L
Sbjct: 301 LNDQDYKGKKLYVGRAQKKSERLEELKKQYEAARIEKLTKSQGVNLFVKNLDDSIDDEKL 360
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ F FG I V++DE G SK G V F+ A++A+
Sbjct: 361 KEEFQSFGTISSVKVMIDESGKSKGFGFVSFSSPEEASRAI 401
>gi|193787802|dbj|BAG53005.1| unnamed protein product [Homo sapiens]
Length = 636
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 76/146 (52%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + + A++A K++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + +E L+ FG FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGAALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAV 248
Score = 41.6 bits (96), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + +LF +G + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGAALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGINDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
>gi|50306049|ref|XP_452986.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74690315|sp|Q6CSV3.1|PABP_KLULA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49642119|emb|CAH01837.1| KLLA0C17600p [Kluyveromyces lactis]
Length = 592
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 14/148 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYK--HNADKA 165
NN LY+G + +ITE + ++F P G + + ++ + G+ ++Y KA
Sbjct: 48 NNASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKA 107
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
+L+ + GR +I ++ + AI+ +KNL + N+ L F FG++
Sbjct: 108 IQELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSC 167
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V +DE GNS+ G V F + A A+
Sbjct: 168 KVALDENGNSRGFGFVHFKEESDAKDAI 195
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 33/166 (19%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKA 165
AN +Y+ NI + T+ + +LF YGE + K+ K FGF+ + A KA
Sbjct: 228 ANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKA 287
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+L+G K ++L + +F +N + +KNL +
Sbjct: 288 VEELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVN--LFIKNLDDSI 345
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+E L+ F +G I A V+ D+ GNSK G V F+ A +A+
Sbjct: 346 DDEKLKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAM 391
>gi|34419622|ref|NP_570951.2| polyadenylate-binding protein 4 isoform 1 [Mus musculus]
gi|33991671|gb|AAH56432.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
gi|148698437|gb|EDL30384.1| mCG5546, isoform CRA_c [Mus musculus]
Length = 660
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 75/161 (46%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + ++ ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+++ + R+ +N + +KNL + +E L
Sbjct: 253 GKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 311 RREFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
>gi|35570|emb|CAA68428.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 76/146 (52%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 31/158 (19%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN--KEKMFGFIRMDYKHNADKAKAKLDGHV 173
+Y+ N G D+ + + +LF P + + K K FGF+ + +A KA +++G
Sbjct: 193 VYIKNFGEDMDDERLKDLFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKE 252
Query: 174 LKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELLELA 207
L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 LNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERLRKE 310
Query: 208 FGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 FSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 347
>gi|291388359|ref|XP_002710763.1| PREDICTED: poly A binding protein, cytoplasmic 4 [Oryctolagus
cuniculus]
Length = 636
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 76/146 (52%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + + A++A K++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + +E L+ FG FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAV 248
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + +LF +G + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
>gi|41386798|ref|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus]
gi|46367787|ref|NP_002559.2| polyadenylate-binding protein 1 [Homo sapiens]
gi|383872540|ref|NP_001244826.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|73974130|ref|XP_856708.1| PREDICTED: polyadenylate-binding protein 1 isoform 6 [Canis lupus
familiaris]
gi|194036975|ref|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [Sus scrofa]
gi|332213999|ref|XP_003256115.1| PREDICTED: polyadenylate-binding protein 1 [Nomascus leucogenys]
gi|344273312|ref|XP_003408467.1| PREDICTED: polyadenylate-binding protein 1-like [Loxodonta
africana]
gi|402878853|ref|XP_003903080.1| PREDICTED: polyadenylate-binding protein 1 [Papio anubis]
gi|3183544|sp|P11940.2|PABP1_HUMAN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|47117093|sp|P61286.1|PABP1_BOVIN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|1562511|gb|AAD08718.1| poly(A)-binding protein [Homo sapiens]
gi|8979741|emb|CAB96752.1| polyadenylate-binding protein 1 [Bos taurus]
gi|16358990|gb|AAH15958.1| PABPC1 protein [Homo sapiens]
gi|23270713|gb|AAH23520.1| Poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
gi|74268035|gb|AAI02366.1| Poly(A) binding protein, cytoplasmic 1 [Bos taurus]
gi|119612221|gb|EAW91815.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|119612223|gb|EAW91817.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|123993665|gb|ABM84434.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|123999981|gb|ABM87499.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|168278070|dbj|BAG11013.1| polyadenylate-binding protein 1 [synthetic construct]
gi|296480464|tpg|DAA22579.1| TPA: polyadenylate-binding protein 1 [Bos taurus]
gi|380811722|gb|AFE77736.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940022|gb|AFI33616.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940024|gb|AFI33617.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 636
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 76/146 (52%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + + A++A K++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + +E L+ FG FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAV 248
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + +LF +G + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
>gi|390476078|ref|XP_002759394.2| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 633
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 76/146 (52%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 31/158 (19%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN--KEKMFGFIRMDYKHNADKAKAKLDGHV 173
+Y+ N G D+ + + +LF P + + K K FGF+ + +A KA +++G
Sbjct: 193 VYIKNFGEDMDDERLKDLFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKE 252
Query: 174 LKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELLELA 207
L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 LNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERLRKE 310
Query: 208 FGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 FSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 347
>gi|431901758|gb|ELK08635.1| Polyadenylate-binding protein 1 [Pteropus alecto]
Length = 636
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 76/146 (52%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + + A++A K++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + +E L+ FG FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAV 248
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + +LF +G + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
>gi|147899475|ref|NP_001085069.1| polyadenylate-binding protein 1-B [Xenopus laevis]
gi|82236793|sp|Q6IP09.1|PABPB_XENLA RecName: Full=Polyadenylate-binding protein 1-B; Short=PABP-1-B;
Short=Poly(A)-binding protein 1-B; Short=xPABP1-B;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-B
gi|47940242|gb|AAH72110.1| MGC79060 protein [Xenopus laevis]
gi|80476254|gb|AAI08463.1| MGC79060 protein [Xenopus laevis]
Length = 633
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 75/144 (52%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE G SK G V F + AA +A+
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAI 155
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + E F YG + + K + FGF+ + +A KA ++
Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+++ + R+ +N + VKNL + +E L
Sbjct: 253 GKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFTPFGSITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
>gi|397508069|ref|XP_003824497.1| PREDICTED: polyadenylate-binding protein 1-like 2-like, partial
[Pan paniscus]
Length = 293
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 80/155 (51%), Gaps = 18/155 (11%)
Query: 105 NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKH 160
N D + A+ LY+G++ ++TE + E F P G + I ++K+ G+ ++Y+
Sbjct: 89 NPDFQMAS---LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQ 145
Query: 161 NADKAKA--KLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGV 210
D +A L+ V+KGR ++I ++ + +++ +KNL + N+ L F
Sbjct: 146 PVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSA 205
Query: 211 FGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
FG+I V DE+G K G V F ++ +A +A+
Sbjct: 206 FGNILSCKVACDEKG-PKGYGFVHFQKQESAERAI 239
>gi|348513241|ref|XP_003444151.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oreochromis niloticus]
Length = 637
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 76/146 (52%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF YG + + K + FGF+ + +A KA +++
Sbjct: 193 VYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + + A++A K++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + +E L F +G+
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDEMDDEKLRELFSKYGNAMSI 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G S+ G V F R A +A+
Sbjct: 221 RVMTDENGKSRGFGFVSFERHEDAQKAV 248
>gi|13096978|gb|AAH03283.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 660
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 75/161 (46%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + ++ ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+++ + R+ +N + +KNL + +E L
Sbjct: 253 GKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
>gi|344281908|ref|XP_003412718.1| PREDICTED: hypothetical protein LOC100663984 [Loxodonta africana]
Length = 640
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 74/144 (51%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ ++TE + E F P G + I ++K+ G+ ++Y+ D +A L
Sbjct: 444 LYVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 503
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + +++ +KNL + N+ L F FG+I V
Sbjct: 504 NFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSTFGNILSCKVAC 563
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE+G K G V F + +A +A+
Sbjct: 564 DEKG-PKGYGFVHFQEQESAERAI 586
>gi|383417509|gb|AFH31968.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 456
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 76/146 (52%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 31/158 (19%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN--KEKMFGFIRMDYKHNADKAKAKLDGHV 173
+Y+ N G D+ + + +LF P + + K K FGF+ + +A KA +++G
Sbjct: 193 VYIKNFGEDMDDERLKDLFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKE 252
Query: 174 LKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELLELA 207
L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 LNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERLRKE 310
Query: 208 FGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 FSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 347
>gi|348513239|ref|XP_003444150.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oreochromis niloticus]
Length = 634
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 76/146 (52%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF YG + + K + FGF+ + +A KA +++
Sbjct: 193 VYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + + A++A K++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + +E L F +G+
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDEMDDEKLRELFSKYGNAMSI 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G S+ G V F R A +A+
Sbjct: 221 RVMTDENGKSRGFGFVSFERHEDAQKAV 248
>gi|149637721|ref|XP_001509272.1| PREDICTED: polyadenylate-binding protein 1-like [Ornithorhynchus
anatinus]
Length = 636
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 76/146 (52%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + + A++A K++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + +E L+ FG FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAV 248
Score = 42.4 bits (98), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + ELF +G + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
>gi|119612225|gb|EAW91819.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_e [Homo
sapiens]
Length = 633
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 76/146 (52%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 31/158 (19%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN--KEKMFGFIRMDYKHNADKAKAKLDGHV 173
+Y+ N G D+ + + +LF P + + K K FGF+ + +A KA +++G
Sbjct: 193 VYIKNFGEDMDDERLKDLFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKE 252
Query: 174 LKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELLELA 207
L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 LNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERLRKE 310
Query: 208 FGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 FSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 347
>gi|357162700|ref|XP_003579494.1| PREDICTED: uncharacterized protein LOC100845138 [Brachypodium
distachyon]
Length = 929
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 78/169 (46%), Gaps = 31/169 (18%)
Query: 108 IKFANNCRLYLGNIGGDITENDIIELFKPYGE------TQELFINKEKMFGFIRMDYKHN 161
+K +N LY+GN+ + + +IELF P+G E F K +GF++ D H+
Sbjct: 198 LKEVDNTNLYVGNLPASVGSHKLIELFLPFGRIVRSKVADECFTGLSKGYGFVKYDDPHS 257
Query: 162 ADKAKAKLDGHVLKGRSLKIRFAPI-----NAAIK-------------------VKNLTS 197
A A +++G ++ G+ L++R A + N +I+ V+NL+
Sbjct: 258 ATAAINRMNGRLVDGKILEVRVAGVPPSGSNPSIQSVSETYSQPSEEIDMSSLYVRNLSL 317
Query: 198 CVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQAL 245
+T E L F FG I A V D G +K G V ++ AA A+
Sbjct: 318 SMTKEELLQHFLPFGKIIDAKVPRDYATGLNKGYGFVRYSNSHEAANAI 366
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 27/167 (16%)
Query: 106 KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKA 165
K++K + +++G I + + ++ELF+P+G+ ++ + + + +G R + +A A
Sbjct: 597 KEVKEIDMANVFVGRIPSTVNGDQLVELFRPFGQIVQVRVFQHQGYGMFRFNDPFSAAAA 656
Query: 166 KAKLDGHVLKGRSLKIRFAPI------NAA---------------IKVKNLTSC-----V 199
++G+ + G +L +R A + +AA I + NL C +
Sbjct: 657 IDHMNGYQIGGSALVVRVAGLPNPGDFSAATDDLKLQMPGNEGRQIDMANLYVCHLPLYI 716
Query: 200 TNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQAL 245
T E L F G I +A V+ D G SK G V FA +AA AL
Sbjct: 717 TTEKLIEIFLPCGQITQARVVTDRYTGISKGFGFVRFADTYSAAVAL 763
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 32/161 (19%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKL 169
LY+ N+ +T+ ++++ F P+G+ + + ++ K +GF+R H A A L
Sbjct: 310 LYVRNLSLSMTKEELLQHFLPFGKIIDAKVPRDYATGLNKGYGFVRYSNSHEAANAIIHL 369
Query: 170 DGHVLKGRSLKIRFAPINAA-----------------IKVKNL------TSCVTNELLEL 206
+GH+++G+ +++R + ++ A I + NL TS T +L+E+
Sbjct: 370 NGHLVEGKKMEVRVSGVSPALSNSAVESHTDARLIKEIDMANLYVCNIPTSIDTKKLIEI 429
Query: 207 AFGVFGDIERAIVIVDERGNSKC--EGIVEFARKPAAAQAL 245
F FG I A V + S G V+FA AA+A+
Sbjct: 430 -FLPFGKITHARVAAHQGTYSGKGRYGFVKFADSQCAAEAI 469
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 19/151 (12%)
Query: 53 GRGGYRGNRPDGRGSDMNESRMGGGGGGDRYFTEKIMAIQGP------TLDLPPSEPQN- 105
G G +R N P + ++ M G G ++ + P T DL P N
Sbjct: 641 GYGMFRFNDPFSAAAAID--HMNGYQIGGSALVVRVAGLPNPGDFSAATDDLKLQMPGNE 698
Query: 106 -KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQEL------FINKEKMFGFIRMDY 158
+ I AN LY+ ++ IT +IE+F P G+ + + K FGF+R
Sbjct: 699 GRQIDMAN---LYVCHLPLYITTEKLIEIFLPCGQITQARVVTDRYTGISKGFGFVRFAD 755
Query: 159 KHNADKAKAKLDGHVLKGRSLKIRFAPINAA 189
++A A ++G+ L+G L++R A ++ +
Sbjct: 756 TYSAAVALTHMNGYPLEGHILEVRIAGVHPS 786
>gi|148539604|ref|NP_001091917.1| polyA-binding protein [Strongylocentrotus purpuratus]
gi|126722149|emb|CAM57104.1| polyA-binding protein [Strongylocentrotus purpuratus]
Length = 640
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 73/147 (49%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHADVTEALLFEKFSTAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ LKGR ++I ++ + +++ +KNL + N+ + F FG I V+
Sbjct: 73 NFDTLKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGHILSCKVVT 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE G +K G V F + AA +A+ +
Sbjct: 133 DENGVNKGYGFVHFETQEAANKAIEKV 159
Score = 42.4 bits (98), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 28/158 (17%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ D+ + + E YG I +K K FGFI + A+ ++G
Sbjct: 194 VFIKNLAEDVDDGKLAEFGGQYGSILSAKIMFDDSKSKGFGFISFEDHEAANDFVKTING 253
Query: 172 HVLKGRSL---------------KIRFAPIN---------AAIKVKNLTSCVTNELLELA 207
+ GR+L K RF + + +KNL + +E L
Sbjct: 254 SEVNGRTLYAGRAQKKAERAAELKARFEALKQERSTRYQGVNLYIKNLDDEIDDERLRKE 313
Query: 208 FGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F +G I A V+ D++ NSK G V F+ A +A+
Sbjct: 314 FSRYGTITSAKVMSDDKANSKGFGFVCFSSPEEATKAV 351
>gi|149023879|gb|EDL80376.1| rCG31475, isoform CRA_b [Rattus norvegicus]
Length = 656
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAANKAIEK 157
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 75/161 (46%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + ++ ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+S+ + R+ +N + +KNL + +E L
Sbjct: 253 GKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
>gi|168053933|ref|XP_001779388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669186|gb|EDQ55778.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 650
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 73/150 (48%), Gaps = 14/150 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAK 166
+ LY+G++ +++E + ELF G+ + + ++ + + ++ + +A +A
Sbjct: 27 STSLYVGDLEPNVSEAQLYELFTQVGQVVSIRVCRDLITRRSLGYAYVNYNSAQDATRAL 86
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
L+ VL G ++I F+ + +I+ +KNL + N+ L F FG I
Sbjct: 87 ELLNFSVLNGNPIRIMFSHRDPSIRKSGTANIFIKNLDKTIDNKALHDTFSAFGGILSCK 146
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V VD G SK G V+F ++ +A A+ +
Sbjct: 147 VAVDGSGQSKGYGFVQFEQEESALTAIEKV 176
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 71/166 (42%), Gaps = 32/166 (19%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNAD 163
KF N +Y+ N+G + TE+D+ +F YG + K K FGF+ ++ NA
Sbjct: 205 KFNN---VYVKNLGENTTEDDLKNVFGAYGTISSAVVMRDSDGKSKCFGFVNFEHPDNAA 261
Query: 164 KAKAKLDG--------HVLKGRSLKIRFAPINAA----------------IKVKNLTSCV 199
KA L+G +V + + R A + A + +KNL V
Sbjct: 262 KAVEALNGKKRDEKEWYVGRAQKKSEREAELRAKFEQERKERIEKYQGVNLYLKNLDDTV 321
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+E L F +G I V+ D +G S+ G V F+ A +A+
Sbjct: 322 DDEKLRELFADYGTITSCKVMRDPQGQSRGSGFVAFSSPEEATRAV 367
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 71/163 (43%), Gaps = 25/163 (15%)
Query: 104 QNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDY 158
++ I+ + +++ N+ I + + F +G + + K +GF++ +
Sbjct: 106 RDPSIRKSGTANIFIKNLDKTIDNKALHDTFSAFGGILSCKVAVDGSGQSKGYGFVQFEQ 165
Query: 159 KHNADKAKAKLDGHVLKGRSLKI----------------RFAPINAAIKVKNLTSCVTNE 202
+ +A A K++G +L + + + +F + VKNL T +
Sbjct: 166 EESALTAIEKVNGMLLNDKQVFVGPFVRRQERDQSGGVSKFN----NVYVKNLGENTTED 221
Query: 203 LLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
L+ FG +G I A+V+ D G SKC G V F AA+A+
Sbjct: 222 DLKNVFGAYGTISSAVVMRDSDGKSKCFGFVNFEHPDNAAKAV 264
>gi|149023878|gb|EDL80375.1| rCG31475, isoform CRA_a [Rattus norvegicus]
Length = 660
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAANKAIEK 157
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 75/161 (46%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + ++ ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+S+ + R+ +N + +KNL + +E L
Sbjct: 253 GKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
>gi|302844953|ref|XP_002954016.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
gi|300260828|gb|EFJ45045.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
Length = 620
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 17/152 (11%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYK-----HNA 162
N LY+G++ D+TE + ELF G + + ++ + G+ ++Y A
Sbjct: 19 TNSSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQAA 78
Query: 163 DKAKAKLDGHVLKGRSLKIRFAPINAA--------IKVKNLTSCVTNELLELAFGVFGDI 214
++A L+ HVL G+ ++I ++ + + I +KNL + + L F FG I
Sbjct: 79 ERAMETLNYHVLNGKPMRIMWSHRDPSARKSGVGNIFIKNLDKSIDAKALHDTFSAFGKI 138
Query: 215 ERAIVIVDERGNSKCEGIVEFARKPAAAQALR 246
V D G SK G V F + AA +A++
Sbjct: 139 LSCKVATDANGVSKGYGFVHFEDQAAADRAIQ 170
>gi|198386356|ref|NP_001094008.1| polyadenylate-binding protein 4 [Rattus norvegicus]
gi|183985833|gb|AAI66452.1| Pabpc4 protein [Rattus norvegicus]
Length = 644
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAANKAIEK 157
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 75/161 (46%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + ++ ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+S+ + R+ +N + +KNL + +E L
Sbjct: 253 GKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
>gi|400260922|pdb|4F02|A Chain A, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
gi|400260925|pdb|4F02|D Chain D, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
Length = 213
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 82/169 (48%), Gaps = 21/169 (12%)
Query: 93 GPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-- 150
GP + PS P LY+G++ D+TE + E F P G + + ++ +
Sbjct: 1 GPLGSMNPSAPSYP------MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITR 54
Query: 151 --FGFIRMDYKHNADKAKA--KLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSC 198
G+ ++++ AD +A ++ V+KG+ ++I ++ + +++ +KNL
Sbjct: 55 RSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKS 114
Query: 199 VTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRR 247
+ N+ L F FG+I V+ DE G SK G V F + AA +A+ +
Sbjct: 115 IDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEK 162
>gi|440797930|gb|ELR19004.1| polyadenylate-binding protein family protein [Acanthamoeba
castellanii str. Neff]
Length = 462
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 72/147 (48%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKL 169
LY+G++ +TE + E+FK G + + ++ + + ++ +A++A L
Sbjct: 12 LYVGDLNPTVTEALLFEIFKAVGPVASIRVCRDAVTRRSLGYAYVNFHNVVDAERALDTL 71
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++KGR +I ++ + +I+ +KNL + N+ L F FG+I V+
Sbjct: 72 NYTLIKGRPCRIMWSHRDPSIRKSGQGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVT 131
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
D +GNSK G V + AA A+ +
Sbjct: 132 DGKGNSKGYGFVHYETSEAADSAIAKV 158
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 38/176 (21%)
Query: 99 PPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGF 153
P S+P+ KF N +Y+ N+G TE D+ F +G Q + K+ + F F
Sbjct: 181 PGSDPE----KFTN---IYIKNLGEAYTEEDLKRDFGAFGTVQSAVLMKDPRDIGRQFAF 233
Query: 154 IRMDYKHNADKAKAKLDGHVLKGRSLKI----------------------RFAPINAAIK 191
+ + A +A +L+G L + + + ++ IN +
Sbjct: 234 VNFEDHEAAHRATEELNGRKLGDKEVYVGRAQKKSERESFLRKLREERAQKYQGIN--LY 291
Query: 192 VKNLTSCVTNELLELAFGV--FGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+KNL V +E L F FG I V+ D++GNS+ G V + A++A+
Sbjct: 292 IKNLDDTVNDEELHKLFSALPFGQITSCKVMSDDKGNSRGFGFVCYTNPEDASKAV 347
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 17/146 (11%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + + F +G + + K +GF+ + AD A AK++
Sbjct: 100 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVTDGKGNSKGYGFVHYETSEAADSAIAKVN 159
Query: 171 GHVLKGRSLKI-RFAPIN-----------AAIKVKNLTSCVTNELLELAFGVFGDIERAI 218
G +L G+ + + RF I +KNL T E L+ FG FG ++ A+
Sbjct: 160 GKMLNGKIVYVGRFIARKERTPGSDPEKFTNIYIKNLGEAYTEEDLKRDFGAFGTVQSAV 219
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQA 244
++ D R + V F AA +A
Sbjct: 220 LMKDPRDIGRQFAFVNFEDHEAAHRA 245
>gi|52346016|ref|NP_001005051.1| poly(A) binding protein, cytoplasmic 1 [Xenopus (Silurana)
tropicalis]
gi|49903495|gb|AAH76931.1| polyadenylate-binding protein 1 [Xenopus (Silurana) tropicalis]
Length = 634
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 75/144 (52%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE G SK G V F + AA +A+
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAI 155
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + E+F YG + + K K FGF+ + +A KA ++
Sbjct: 193 VYIKNFGEDMDDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDDMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+++ + R+ +N + VKNL + +E L
Sbjct: 253 GKDMNGKAIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + + A++A K++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + +E L+ FG +G
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEMFGKYGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D+ G SK G V F R A +A+
Sbjct: 221 KVMTDDNGKSKGFGFVSFERHEDAQKAV 248
>gi|344287653|ref|XP_003415567.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Loxodonta
africana]
Length = 660
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+ + + R+ +N + +KNL + +E L
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|351713677|gb|EHB16596.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 661
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+ + + R+ +N + +KNL + +E L
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAV 350
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|62511030|sp|Q6IQ97.1|RBM41_DANRE RecName: Full=RNA-binding protein 4.1; AltName: Full=RNA-binding
motif protein 4.1
gi|47940417|gb|AAH71513.1| RNA binding motif protein 4.1 [Danio rerio]
gi|160774000|gb|AAI55176.1| RNA binding motif protein 4.1 [Danio rerio]
Length = 419
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 6/112 (5%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVL 174
++++GN+ + T +I LF YG+ E I K FGF+ MD K AD+A L ++L
Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIVKN--FGFVHMDSKSEADEAIQNLHHYML 60
Query: 175 KGRSLKIRFA----PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD 222
G ++ + + + + V N++S TN+ L F +G + ++ D
Sbjct: 61 NGMAMNVEMSKGKPKTSTKLHVGNISSSCTNQELRAKFEEYGPVVECDIVKD 112
>gi|268566587|ref|XP_002639761.1| C. briggsae CBR-PAB-1 protein [Caenorhabditis briggsae]
Length = 651
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 74/147 (50%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+ E+ + E F G + + ++ G+ ++++ AD +A +
Sbjct: 34 LYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTM 93
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ L G+ ++I ++ + A++ +KNL + N+ + F +FG+I V +
Sbjct: 94 NFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAI 153
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE G+SK G V F + AA A+++
Sbjct: 154 DEEGSSKGYGFVHFETEEAAQNAIQKV 180
Score = 45.1 bits (105), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 67/167 (40%), Gaps = 33/167 (19%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADK 164
KF N +Y+ N G ++ + +LF YG + K K FGF+ A+
Sbjct: 211 KFTN---VYVKNFGEHYNKDTLEKLFAKYGTITSCDVMTSEGKSKGFGFVAFAEPEEAEA 267
Query: 165 AKAKLDGHVLKGRSLKI----------RFAPIN----------------AAIKVKNLTSC 198
A L+ ++G LK+ R A + + VKNL
Sbjct: 268 AVQALNDSPVEGSDLKLHVCRAQKKSERHAELKKKHEQHKVERMQKYQGVNLYVKNLDES 327
Query: 199 VTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
V +E L+ F FG+I A V+ DE G SK G V F + A A+
Sbjct: 328 VDDEALKKQFESFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAV 374
>gi|321466794|gb|EFX77787.1| polyadenylate binding protein, cytoplasmic 1 [Daphnia pulex]
Length = 574
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 74/147 (50%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ ++TE + E F G + + ++ + G+ ++++ AD +A +
Sbjct: 14 LYVGDLHNEVTEAMLFEKFSTAGPVVSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 73
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ VL+GR ++I ++ + +++ +KNL + N+ + F FG+I V
Sbjct: 74 NFDVLRGRPIRIMWSQRDPSLRRSGVGNIFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQ 133
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE GNSK G V F + +A A+ +
Sbjct: 134 DEAGNSKGYGFVHFETEESAVNAITKV 160
>gi|119627673|gb|EAX07268.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_h [Homo sapiens]
Length = 661
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+ + + R+ +N + +KNL + +E L
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPNGKSKGFGFVSYEKHEDANKAV 248
>gi|297283068|ref|XP_001113342.2| PREDICTED: polyadenylate-binding protein 4 [Macaca mulatta]
Length = 657
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 69/158 (43%), Gaps = 31/158 (19%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQEL--FINKEKMFGFIRMDYKHNADKAKAKLDGHV 173
+Y+ N G ++ + + ELF + + K K FGF+ + +A+KA +++G
Sbjct: 193 VYIKNFGEEVDDESLKELFSKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKE 252
Query: 174 LKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELLELA 207
+ G+ + + R+ +N + +KNL + +E L
Sbjct: 253 ISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKLRKE 310
Query: 208 FGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 311 FSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 347
>gi|148674413|gb|EDL06360.1| mCG5434 [Mus musculus]
Length = 534
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 76/144 (52%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE+ + E+F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + ++ +KNL + + N+ L F FG I + V+
Sbjct: 73 NFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVY 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
+E G S+ G V F AA +A+
Sbjct: 133 NEHG-SRGFGFVHFETHEAAQKAI 155
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 67/148 (45%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGE--TQELFINKE--KMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + ++ N+ + FGF+ + A KA ++G
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMNG 160
Query: 172 HVLKGRSLKI--------RFAPINA------AIKVKNLTSCVTNELLELAFGVFGDIERA 217
+L R + + R A + A I VKNL + V + L+ F FG+++
Sbjct: 161 MLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G S+ G V F + A +A+
Sbjct: 221 KVMRDSNGQSRGFGFVNFEKHEEAQKAV 248
>gi|426374960|ref|XP_004054321.1| PREDICTED: polyadenylate-binding protein 3 [Gorilla gorilla
gorilla]
Length = 631
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 15/149 (10%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAK 166
LY+G++ D+TE + E F P G + + ++ + + ++ + +A+ A
Sbjct: 10 TASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEHAL 69
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
++ V+KG+ L+I ++ + +++ VKNL + N+ L FG+I
Sbjct: 70 HTMNFDVIKGKPLRIMWSQRDPSLRKRGVGNIFVKNLDKSINNKALYDTVSAFGNILSCK 129
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALRR 247
V+ DE G SK G V F AA +A+ +
Sbjct: 130 VVCDENG-SKGYGFVHFETHEAAERAIEK 157
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + +LF +G + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
AF FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 WKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + +G + N K +GF+ + A++A K++G
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + +E L+ FG FG
Sbjct: 161 MLLNDRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAV 248
>gi|344304706|gb|EGW34938.1| hypothetical protein SPAPADRAFT_58066 [Spathaspora passalidarum
NRRL Y-27907]
Length = 508
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 33/166 (19%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKA 165
AN +Y+ NI + ++ + +LF P+G +++ K+ K FGF+ + +A KA
Sbjct: 105 ANYTNIYVKNIDLEFSDEEFEKLFVPFGTITSIYLEKDQDGKSKGFGFVNYETHESAVKA 164
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+L+ + G+ + + ++ +N + VKNL +
Sbjct: 165 VEELNDKEINGQKIYVGRAQKKRERMEELKKQYESTRVERLSKYQGVN--LFVKNLDDSI 222
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+E LE F FG I A V+VDE G SK G V F+ A +A+
Sbjct: 223 DSEKLEEEFKPFGSITSAKVMVDEAGKSKGFGFVCFSSPEEATKAI 268
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%)
Query: 190 IKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEF 235
I +KNL + N+ L F FG I V D+ G SKC G V +
Sbjct: 17 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATDDMGQSKCFGFVHY 62
>gi|410966840|ref|XP_003989935.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Felis catus]
Length = 660
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+ + + R+ +N + +KNL + +E L
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|410263248|gb|JAA19590.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410263254|gb|JAA19593.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 30/159 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGR---------------SLKIRFAPIN---------AAIKVKNLTSCVTNELLEL 206
G + G+ LK +F + + +KNL + +E L
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 313 EFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPNGKSKGFGFVSYEKHEDANKAV 248
>gi|48734702|gb|AAH71591.1| PABPC4 protein [Homo sapiens]
Length = 660
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+ + + R+ +N + +KNL + +E L
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPNGKSKGFGFVSYEKHEDANKAV 248
>gi|349803919|gb|AEQ17432.1| putative poly binding cytoplasmic 1 [Hymenochirus curtipes]
Length = 590
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 75/144 (52%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE G SK G V F + AA +A+
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAI 155
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 33/151 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + E+F YG + + K K FGF+ + +A KA ++
Sbjct: 193 VYIKNFGEDMDDERLKEMFGKYGPALSVKVMTDDSGKSKGFGFVSFERHEDAQKAVDDMN 252
Query: 171 GHVLKGRSLKI-------------------------RFAPINAAIKVKNLTSCVTNELLE 205
G + G+++ + R+ +N + VKNL + +E L
Sbjct: 253 GKDMNGKAIYVGRAKKVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERLR 310
Query: 206 LAFGVFGDIERAIVIVDERGNSKCEGIVEFA 236
F FG I A V++ E G SK G V F+
Sbjct: 311 KEFSPFGTITSAKVMM-EGGRSKGFGFVCFS 340
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + + A++A K++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + +E L+ FG +G
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEMFGKYGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D+ G SK G V F R A +A+
Sbjct: 221 KVMTDDSGKSKGFGFVSFERHEDAQKAV 248
>gi|326503608|dbj|BAJ86310.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 130/295 (44%), Gaps = 56/295 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKA--KL 169
LY+G++ ++T++ + ELF G+ + + N + G+ ++Y + D A+A L
Sbjct: 124 LYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARAMEAL 183
Query: 170 DGHVLKGRSLKIRFA---PIN-----AAIKVKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ L + +++ ++ P + A I +KNL + N+ L F FG I V +
Sbjct: 184 NFAPLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVAM 243
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDE--------- 272
D+ G SK G V++ ++ +A A++ G + +PV V P E
Sbjct: 244 DDIGQSKGFGFVQYEKEESAQSAMKSL-NGMLI---NDKPVYVGPFLRKQERDNSSDKAK 299
Query: 273 -----IDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYG----SR------WKQLHE 317
+ LSE T + + + + + T+ S G SR ++ +
Sbjct: 300 FNNVFVKNLSESTTKEDLIKVFSE------YGTITSAVVMIGMDGKSRCFGFVNFESPDD 353
Query: 318 LYEHETEMLRKELAQRE--IDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQ 370
E+ K++ +E + R ++K+E EM +LKRR E+ MK A++ Q
Sbjct: 354 AARAVEELNGKKINDKEWYVGRAQKKSEREM------DLKRRFEQSMKDAADKYQ 402
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 32/166 (19%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNAD 163
KF N +++ N+ T+ D+I++F YG + K + FGF+ + +A
Sbjct: 299 KFNN---VFVKNLSESTTKEDLIKVFSEYGTITSAVVMIGMDGKSRCFGFVNFESPDDAA 355
Query: 164 KAKAKLDGHVLK------GRS---------LKIRF--APINAAIK-------VKNLTSCV 199
+A +L+G + GR+ LK RF + +AA K +KNL +
Sbjct: 356 RAVEELNGKKINDKEWYVGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGI 415
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
T++ L F FG I ++ D+ G SK G V F+ + A+QAL
Sbjct: 416 TDDQLRELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTREEASQAL 461
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 67/152 (44%), Gaps = 21/152 (13%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELF-----INKEKMFGFIRMDYKHNADKAKA 167
+ +++ N+ I + + F +G I + K FGF++ + + +A A
Sbjct: 209 SANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVAMDDIGQSKGFGFVQYEKEESAQSAMK 268
Query: 168 KLDGHVLKGRSLKIRFAPI-------NAAIK-------VKNLTSCVTNELLELAFGVFGD 213
L+G ++ + + + P N++ K VKNL+ T E L F +G
Sbjct: 269 SLNGMLINDKPVYV--GPFLRKQERDNSSDKAKFNNVFVKNLSESTTKEDLIKVFSEYGT 326
Query: 214 IERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
I A+V++ G S+C G V F AA+A+
Sbjct: 327 ITSAVVMIGMDGKSRCFGFVNFESPDDAARAV 358
>gi|403292058|ref|XP_003937074.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 659
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+ + + R+ +N + +KNL + +E L
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPNGKSKGFGFVSYEKHEDANKAV 248
>gi|395853068|ref|XP_003799042.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Otolemur
garnettii]
Length = 662
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+ + + R+ +N + +KNL + +E L
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
Score = 39.7 bits (91), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|348552994|ref|XP_003462312.1| PREDICTED: polyadenylate-binding protein 4-like isoform 1 [Cavia
porcellus]
Length = 660
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 73/161 (45%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + ++ ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+ + + R+ +N + +KNL + +E L
Sbjct: 253 GKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAV 350
Score = 38.9 bits (89), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|338721949|ref|XP_003364451.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Equus
caballus]
Length = 660
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+ + + R+ +N + +KNL + +E L
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
Score = 39.7 bits (91), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|332248413|ref|XP_003273358.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|355557859|gb|EHH14639.1| hypothetical protein EGK_00600 [Macaca mulatta]
gi|383411103|gb|AFH28765.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
gi|384941238|gb|AFI34224.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
Length = 660
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+ + + R+ +N + +KNL + +E L
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
Score = 39.7 bits (91), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|208431833|ref|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [Homo sapiens]
gi|332808508|ref|XP_513344.3| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pan
troglodytes]
gi|395730714|ref|XP_002811047.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pongo abelii]
gi|397488842|ref|XP_003815452.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pan paniscus]
gi|426329062|ref|XP_004025563.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Gorilla
gorilla gorilla]
gi|66267552|gb|AAH94755.1| PABPC4 protein [Homo sapiens]
gi|119627668|gb|EAX07263.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_c [Homo sapiens]
gi|410227598|gb|JAA11018.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410227604|gb|JAA11021.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+ + + R+ +N + +KNL + +E L
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPNGKSKGFGFVSYEKHEDANKAV 248
>gi|402854027|ref|XP_003891682.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Papio anubis]
Length = 660
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+ + + R+ +N + +KNL + +E L
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAV 350
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|395853070|ref|XP_003799043.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Otolemur
garnettii]
Length = 646
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+ + + R+ +N + +KNL + +E L
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
Score = 39.7 bits (91), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|350585908|ref|XP_003482078.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Sus scrofa]
Length = 660
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 74/161 (45%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + ++ ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+ + + R+ +N + +KNL + +E L
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
Score = 38.9 bits (89), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|380793569|gb|AFE68660.1| polyadenylate-binding protein 4 isoform 3, partial [Macaca mulatta]
Length = 485
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 30/159 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGR---------------SLKIRFAPIN---------AAIKVKNLTSCVTNELLEL 206
G + G+ LK +F + + +KNL + +E L
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 313 EFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|444706907|gb|ELW48224.1| Polyadenylate-binding protein 4 [Tupaia chinensis]
Length = 692
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPTGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+ + + R+ +N + +KNL + +E L
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAV 350
Score = 39.3 bits (90), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPTGKSKGFGFVSYEKHEDANKAV 248
>gi|354485887|ref|XP_003505113.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
Length = 685
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 35 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 94
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 95 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 154
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 155 DENG-SKGYAFVHFETQEAADKAIEK 179
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 75/161 (46%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ ++++ ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 215 VYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 274
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+++ + R+ +N + +KNL + +E L
Sbjct: 275 GKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 332
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 333 RKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAV 372
>gi|344287651|ref|XP_003415566.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Loxodonta
africana]
Length = 644
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+ + + R+ +N + +KNL + +E L
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAV 350
Score = 39.7 bits (91), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|417403696|gb|JAA48646.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 660
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEMDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+ + + R+ +N + +KNL + +E L
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAV 350
>gi|293351002|ref|XP_001054954.2| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Rattus norvegicus]
Length = 438
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 79/155 (50%), Gaps = 18/155 (11%)
Query: 105 NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKH 160
N D A+ LY+G++ ++TE+ + E F P G + + ++K+ G+ ++Y+
Sbjct: 234 NPDFPTAS---LYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQ 290
Query: 161 NADKAKA--KLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGV 210
D +A ++ V+ GR ++I ++ + +++ +KNL + N+ L F
Sbjct: 291 PVDAKRALETMNFDVINGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSA 350
Query: 211 FGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
FG+I V DE+G K G V F ++ +A +A+
Sbjct: 351 FGNILSCKVACDEKG-PKGYGFVHFQKQESAERAI 384
>gi|410263250|gb|JAA19591.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 644
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 30/159 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGR---------------SLKIRFAPIN---------AAIKVKNLTSCVTNELLEL 206
G + G+ LK +F + + +KNL + +E L
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 313 EFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAV 350
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPNGKSKGFGFVSYEKHEDANKAV 248
>gi|82802753|gb|ABB92427.1| PABP3 [Gorilla gorilla]
Length = 630
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 72/146 (49%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKL 169
LY+G++ D+TE + E F P G + + ++ + + ++ + +A+ A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEHALHTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ L+I ++ + +++ VKNL + N+ L FG+I V+
Sbjct: 73 NFDVIKGKPLRIMWSQRDPSLRKRGVGNIFVKNLDKSINNKALYDTVSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETHEAAERAIEK 157
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + +LF +G + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
AF FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 WKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + +G + N K +GF+ + A++A K++G
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + +E L+ FG FG
Sbjct: 161 MLLNDRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAV 248
>gi|335291035|ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Sus scrofa]
Length = 644
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 74/161 (45%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + ++ ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+ + + R+ +N + +KNL + +E L
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
Score = 38.9 bits (89), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|149693775|ref|XP_001503500.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Equus
caballus]
Length = 644
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+ + + R+ +N + +KNL + +E L
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|4504715|ref|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo sapiens]
gi|332808510|ref|XP_003308042.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730716|ref|XP_003775777.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pongo abelii]
gi|397488844|ref|XP_003815453.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pan paniscus]
gi|426329066|ref|XP_004025565.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Gorilla
gorilla gorilla]
gi|12229875|sp|Q13310.1|PABP4_HUMAN RecName: Full=Polyadenylate-binding protein 4; Short=PABP-4;
Short=Poly(A)-binding protein 4; AltName:
Full=Activated-platelet protein 1; Short=APP-1; AltName:
Full=Inducible poly(A)-binding protein; Short=iPABP
gi|1163177|gb|AAC50350.1| inducible poly(A)-binding protein [Homo sapiens]
gi|2801403|gb|AAB97309.1| polyadenylate binding protein [Homo sapiens]
gi|119627669|gb|EAX07264.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_d [Homo sapiens]
gi|410227600|gb|JAA11019.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|1585757|prf||2201474A inducible poly(A)-binding protein
Length = 644
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 30/159 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGR---------------SLKIRFAPIN---------AAIKVKNLTSCVTNELLEL 206
G + G+ LK +F + + +KNL + +E L
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 313 EFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAV 350
Score = 39.7 bits (91), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPNGKSKGFGFVSYEKHEDANKAV 248
>gi|410966842|ref|XP_003989936.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Felis catus]
Length = 644
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+ + + R+ +N + +KNL + +E L
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAV 350
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|297304162|ref|XP_002806331.1| PREDICTED: polyadenylate-binding protein 1-like 2-like, partial
[Macaca mulatta]
Length = 249
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 79/155 (50%), Gaps = 18/155 (11%)
Query: 105 NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKH 160
N D A+ LY+G++ ++TE + E F P G + I ++K+ G+ ++Y+
Sbjct: 45 NPDFPMAS---LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQ 101
Query: 161 NADKAKA--KLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGV 210
D +A L+ V+KGR ++I ++ + +++ +KNL + N+ L F
Sbjct: 102 PVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSA 161
Query: 211 FGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
FG+I V DE+G K G V F ++ +A +A+
Sbjct: 162 FGNILSCKVACDEKG-PKGYGFVHFQKQESAERAI 195
>gi|27469824|gb|AAH41956.1| PABPC1L2B protein [Homo sapiens]
Length = 243
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 80/155 (51%), Gaps = 18/155 (11%)
Query: 105 NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKH 160
N D + A+ LY+G++ ++TE + E F P G + I ++K+ G+ ++Y+
Sbjct: 39 NPDFQMAS---LYVGDLHPEVTEAMLYEKFSPAGPILSISICRDKITRRSLGYAYVNYQQ 95
Query: 161 NADKAKA--KLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGV 210
D +A L+ V+KGR ++I ++ + +++ +KNL + N+ L F
Sbjct: 96 PVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSA 155
Query: 211 FGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
FG+I V DE+G K G V F ++ +A +A+
Sbjct: 156 FGNILSCKVACDEKG-PKGYGFVHFQKQESAERAI 189
>gi|390465724|ref|XP_002750686.2| PREDICTED: polyadenylate-binding protein 4 [Callithrix jacchus]
Length = 656
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 30/159 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDESLKELFIQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGR---------------SLKIRFAPIN---------AAIKVKNLTSCVTNELLEL 206
G + G+ LK +F + + +KNL + +E L
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 313 EFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAV 350
Score = 38.5 bits (88), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFIQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPNGKSKGFGFVSYEKHEDANKAV 248
>gi|426215226|ref|XP_004001875.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Ovis aries]
Length = 660
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 74/161 (45%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + ++ ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+ + + R+ +N + +KNL + +E L
Sbjct: 253 GKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
Score = 38.9 bits (89), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|417403591|gb|JAA48595.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 644
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEMDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+ + + R+ +N + +KNL + +E L
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAV 350
>gi|390597906|gb|EIN07305.1| polyadenylate binding protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 668
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 74/150 (49%), Gaps = 14/150 (9%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--K 164
A + LY+G + ++E + E+F G + + ++ + G+ ++Y + AD +
Sbjct: 49 APSASLYVGELDPTVSEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYFNAADGER 108
Query: 165 AKAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIER 216
A +L+ ++KGR+ +I ++ + A++ +KNL + N+ L F FG++
Sbjct: 109 ALEQLNYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDDAIDNKALHDTFAAFGNVLS 168
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQALR 246
V DE G SK G V + AA A++
Sbjct: 169 CKVATDEMGRSKGYGFVHYETNEAAESAIK 198
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 66/161 (40%), Gaps = 33/161 (20%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKHNADKAKAKLD 170
+Y+ NI + +++ ELF P+G + +++ FGF+ + A KA L
Sbjct: 235 VYVKNIDPEANDDEFRELFTPFGNVTSAVLQRDEEGRSRGFGFVNFETHEEAQKAVDTLH 294
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
KGR L + ++ +N + +KNL V +E L
Sbjct: 295 DSDFKGRKLFVSRAQKKSEREEELRRSYEQAKMEKMSKYQGVN--LYIKNLEDDVDDEKL 352
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
AF FG I A V+ E G SK G V F+ A +A+
Sbjct: 353 RDAFEPFGAITSAKVMRTEGGTSKGFGFVCFSSPDEATKAV 393
>gi|332248415|ref|XP_003273359.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|383411101|gb|AFH28764.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
gi|384941236|gb|AFI34223.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
Length = 644
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 30/159 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGR---------------SLKIRFAPIN---------AAIKVKNLTSCVTNELLEL 206
G + G+ LK +F + + +KNL + +E L
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 313 EFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|119627667|gb|EAX07262.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_b [Homo sapiens]
Length = 645
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 30/159 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGR---------------SLKIRFAPIN---------AAIKVKNLTSCVTNELLEL 206
G + G+ LK +F + + +KNL + +E L
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 313 EFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAV 350
Score = 39.7 bits (91), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPNGKSKGFGFVSYEKHEDANKAV 248
>gi|395333502|gb|EJF65879.1| polyadenylate binding protein [Dichomitus squalens LYAD-421 SS1]
Length = 664
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 74/152 (48%), Gaps = 14/152 (9%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD- 163
+ + LY+G + +TE + E+F G + + ++ + G+ ++Y + AD
Sbjct: 39 QITPSASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADG 98
Query: 164 -KAKAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDI 214
+A +L+ ++KGR+ +I ++ + A++ +KNL + N+ L F FG++
Sbjct: 99 ERALEQLNYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNV 158
Query: 215 ERAIVIVDERGNSKCEGIVEFARKPAAAQALR 246
V DE G SK G V + AA A++
Sbjct: 159 LSCKVATDEHGRSKGYGFVHYETAEAAETAIK 190
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 67/164 (40%), Gaps = 29/164 (17%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKHNADKA 165
A +Y+ N+ ++T++D ++LF+ +G I ++ FGF+ + A KA
Sbjct: 226 AQFTNIYVKNLDPEVTQDDFVKLFEQFGNVTSAVIQTDEQGQSRGFGFVNFETHEEAQKA 285
Query: 166 KAKLDGHVLKGRSLKIRFAPINAA------------------------IKVKNLTSCVTN 201
L GR L + A A + +KNL + +
Sbjct: 286 VETLHDSEYHGRKLFVSRAQKKAEREEELRKSYEQAKVEKMSKYQGVNLYIKNLEDDIDD 345
Query: 202 ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
E L F FG I A V+ DE+G SK G V F+ A +A+
Sbjct: 346 ERLRQEFEPFGSITSAKVMRDEKGTSKGFGFVCFSSPDEATKAV 389
>gi|348552996|ref|XP_003462313.1| PREDICTED: polyadenylate-binding protein 4-like isoform 2 [Cavia
porcellus]
Length = 644
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 30/159 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + ++ ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGR---------------SLKIRFAPIN---------AAIKVKNLTSCVTNELLEL 206
G + G+ LK +F + + +KNL + +E L
Sbjct: 253 GKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 313 EFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAV 350
Score = 38.9 bits (89), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|73976763|ref|XP_857000.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Canis lupus
familiaris]
Length = 644
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+ + + R+ +N + +KNL + +E L
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|139948570|ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]
gi|134024563|gb|AAI34510.1| PABPC4 protein [Bos taurus]
gi|296488909|tpg|DAA31022.1| TPA: poly A binding protein, cytoplasmic 4 [Bos taurus]
Length = 645
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 74/161 (45%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + ++ ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+ + + R+ +N + +KNL + +E L
Sbjct: 253 GKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
Score = 38.9 bits (89), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|402854029|ref|XP_003891683.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Papio anubis]
Length = 644
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+ + + R+ +N + +KNL + +E L
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|392355792|ref|XP_228576.4| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Rattus norvegicus]
Length = 456
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 79/155 (50%), Gaps = 18/155 (11%)
Query: 105 NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKH 160
N D A+ LY+G++ ++TE+ + E F P G + + ++K+ G+ ++Y+
Sbjct: 252 NPDFPTAS---LYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQ 308
Query: 161 NADKAKA--KLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGV 210
D +A ++ V+ GR ++I ++ + +++ +KNL + N+ L F
Sbjct: 309 PVDAKRALETMNFDVINGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSA 368
Query: 211 FGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
FG+I V DE+G K G V F ++ +A +A+
Sbjct: 369 FGNILSCKVACDEKG-PKGYGFVHFQKQESAERAI 402
>gi|403292060|ref|XP_003937075.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 643
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+ + + R+ +N + +KNL + +E L
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
Score = 39.7 bits (91), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPNGKSKGFGFVSYEKHEDANKAV 248
>gi|426215228|ref|XP_004001876.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Ovis aries]
Length = 644
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 73/161 (45%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + ++ ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+ + + R+ +N + +KNL + +E L
Sbjct: 253 GKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAV 350
Score = 38.9 bits (89), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|291399204|ref|XP_002715240.1| PREDICTED: poly A binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 644
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 72/161 (44%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + +LF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDESLKDLFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+ + + R+ +N + +KNL + +E L
Sbjct: 253 GKEIGGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAV 350
Score = 39.3 bits (90), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKDLFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|82802749|gb|ABB92425.1| PABP3 [Homo sapiens]
Length = 630
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 73/146 (50%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKL 169
LY+G++ D+TE + E F P G + I ++ + + ++ + +A+ A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ VKNL + N+ L FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F AA +A+++
Sbjct: 133 DENG-SKGYGFVHFETHEAAERAIKK 157
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + +LF +G + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
AF FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + +G + N K +GF+ + A++A K++G
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L GR S K R A + A K +KN + +E L+ FG FG
Sbjct: 161 MLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAV 248
>gi|291408594|ref|XP_002720593.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oryctolagus cuniculus]
Length = 636
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAA--------IKVKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + + I +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLHKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + + A++A K++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + +E L+ FG FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAV 248
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + +LF +G + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
>gi|297739370|emb|CBI29360.3| unnamed protein product [Vitis vinifera]
Length = 633
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 20/169 (11%)
Query: 102 EPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRM 156
+P + FAN +++ N+ I +++ F +G I + K +GF++
Sbjct: 92 DPSIRKSGFAN---VFIKNLDPSIDNKALLDTFAAFGTVLSCKIALDNNGQSKGYGFVQF 148
Query: 157 DYKHNADKAKAKLDGHVLKGRSLKIRF------------APINAAIKVKNLTSCVTNELL 204
+ + A A +L+G ++ + + + +P + VKNL+ T++ L
Sbjct: 149 EQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQERNRGNGSPKFTNVYVKNLSETTTDDDL 208
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCF 253
+ FG +G I A+V+ D G SKC G V F +AA A+ F
Sbjct: 209 KNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLNGATF 257
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 69/150 (46%), Gaps = 14/150 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAK 166
N LY+G++ I E + +LF+ + + +++ + ++ +A A
Sbjct: 12 NASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATNAL 71
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
L+ L G+ ++I F+ + +I+ +KNL + N+ L F FG +
Sbjct: 72 EHLNFTPLNGKPIRIMFSHRDPSIRKSGFANVFIKNLDPSIDNKALLDTFAAFGTVLSCK 131
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALRRC 248
+ +D G SK G V+F ++ AA A++R
Sbjct: 132 IALDNNGQSKGYGFVQFEQEEAAQNAIKRL 161
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 69/171 (40%), Gaps = 33/171 (19%)
Query: 105 NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYK 159
N KF N +Y+ N+ T++D+ +F YG + ++ K FGF+
Sbjct: 186 NGSPKFTN---VYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSS 242
Query: 160 HNADKAKAKLDG---------HVLKGRSLKIRFAPINAA----------------IKVKN 194
+A A L+G +V K + R A + A + +KN
Sbjct: 243 DSAAAAVEHLNGATFNDDKVWYVGKAQRKSEREAELRAKFEQERKNKFEKFKGTNLYLKN 302
Query: 195 LTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
L V +E L+ F FG I V++D +G SK G V F A +AL
Sbjct: 303 LDDSVNDEKLKELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATRAL 353
>gi|22507391|ref|NP_683717.1| polyadenylate-binding protein 4 isoform 2 [Mus musculus]
gi|16307591|gb|AAH10345.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 615
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 75/161 (46%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + ++ ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+++ + R+ +N + +KNL + +E L
Sbjct: 253 GKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 311 RREFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
>gi|57997079|emb|CAB66834.2| hypothetical protein [Homo sapiens]
Length = 631
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 73/146 (50%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKL 169
LY+G++ D+TE + E F P G + I ++ + + ++ + +A+ A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ VKNL + N+ L FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F AA +A+++
Sbjct: 133 DENG-SKGYGFVHFETHEAAERAIKK 157
Score = 45.1 bits (105), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGE--TQELFIN---KEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + +LF +G + EL + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVELMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
AF FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + +G + N K +GF+ + A++A K++G
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L GR S K R A + A K +KN + +E L+ FG FG
Sbjct: 161 MLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
++ DE G SK G V F R A +A+
Sbjct: 221 ELMTDESGKSKGFGFVSFERHEDAQKAV 248
>gi|403169797|ref|XP_003889581.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375168424|gb|EHS63645.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 715
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 72/148 (48%), Gaps = 14/148 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA- 167
N LY+G + +TE + E+F G + + ++ + G+ ++Y + AD +A
Sbjct: 83 NTSLYVGELDPTVTEAMLYEIFSMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADAERAL 142
Query: 168 -KLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
+L+ ++K ++ +I ++ + +++ +KNL + N+ L F FGDI
Sbjct: 143 EQLNYSLIKNKACRIMWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFGDILSCK 202
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALR 246
V DE G SK G V + +A A++
Sbjct: 203 VATDEHGASKGYGFVHYVTGESAEAAIK 230
Score = 38.9 bits (89), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 64/159 (40%), Gaps = 29/159 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
LY+ N+ + T ++ E+F +G + K + FGF+ + +A KA L
Sbjct: 267 LYIKNLPTETTTEELNEVFGKFGPITSAAVQSDEHGKHRGFGFVNYENHESASKAVDALH 326
Query: 171 GHVLKGRSLKI--------RFAPINAA----------------IKVKNLTSCVTNELLEL 206
KG L + R A + A + VKNL +E L+
Sbjct: 327 DKDYKGNVLYVARAQKRTERDAELKKAHEQQKYETTLKYQGVNLYVKNLDDEYDDEKLQN 386
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I V+ DE+G SK G V F+ A +A+
Sbjct: 387 EFTPFGTITSCKVMKDEKGTSKGFGFVCFSSPDEATKAV 425
>gi|11610605|gb|AAG38953.1|AF132026_1 testis-specific poly(A)-binding protein [Homo sapiens]
Length = 631
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 73/146 (50%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKL 169
LY+G++ D+TE + E F P G + I ++ + + ++ + +A+ A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ VKNL + N+ L FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F AA +A+++
Sbjct: 133 DENG-SKGYGFVHFETHEAAERAIKK 157
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + +LF +G + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
AF FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + +G + N K +GF+ + A++A K++G
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L GR S K R A + A K +KN + +E L+ FG FG
Sbjct: 161 MLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAV 248
>gi|45238849|ref|NP_112241.2| polyadenylate-binding protein 3 [Homo sapiens]
gi|28201852|sp|Q9H361.2|PABP3_HUMAN RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3; AltName:
Full=Testis-specific poly(A)-binding protein
gi|20379668|gb|AAH27617.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|119628765|gb|EAX08360.1| poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|123982576|gb|ABM83029.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|123997243|gb|ABM86223.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|189055351|dbj|BAG36140.1| unnamed protein product [Homo sapiens]
Length = 631
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 73/146 (50%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKL 169
LY+G++ D+TE + E F P G + I ++ + + ++ + +A+ A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ VKNL + N+ L FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F AA +A+++
Sbjct: 133 DENG-SKGYGFVHFETHEAAERAIKK 157
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + +LF +G + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
AF FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + +G + N K +GF+ + A++A K++G
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L GR S K R A + A K +KN + +E L+ FG FG
Sbjct: 161 MLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAV 248
>gi|410263252|gb|JAA19592.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 30/159 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGR---------------SLKIRFAPIN---------AAIKVKNLTSCVTNELLEL 206
G + G+ LK +F + + +KNL + +E L
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 313 EFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
Score = 39.3 bits (90), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPNGKSKGFGFVSYEKHEDANKAV 248
>gi|409045875|gb|EKM55355.1| hypothetical protein PHACADRAFT_255926 [Phanerochaete carnosa
HHB-10118-sp]
Length = 672
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 74/148 (50%), Gaps = 14/148 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KAK 166
+ LY+G + ++E + E+F G + + ++ + G+ ++Y + AD +A
Sbjct: 48 SASLYVGELDPTVSEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 107
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
+L+ ++KGR+ +I ++ + A++ +KNL + N+ L F FG++
Sbjct: 108 EQLNYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFGNVLSCK 167
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALR 246
V DE+G SK G V + AA A++
Sbjct: 168 VATDEQGRSKGYGFVHYETAEAAETAIK 195
Score = 45.1 bits (105), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 65/164 (39%), Gaps = 29/164 (17%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKA 165
A +Y+ N+ +++ + +LF+ +G I + K FGF+ ++ A A
Sbjct: 227 AQFTNIYVKNLDPEVSLEEFTQLFEQFGNVTSAVIQTDEEGNSKGFGFVNFEFHEEAQNA 286
Query: 166 KAKLDGHVLKGRSLKIRFAPINAA------------------------IKVKNLTSCVTN 201
L GR L + A A + +KNL + +
Sbjct: 287 VDGLHDTEYNGRKLFVSRAQKKAEREEELRKSYEHAKMEKMSKYQGVNLYIKNLDDEIDD 346
Query: 202 ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
E L F FG I A V+ DE+G+SK G V F+ A +A+
Sbjct: 347 ERLRAEFEPFGTITSAKVMRDEKGSSKGFGFVCFSSPDEATKAV 390
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 19/139 (13%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + + F +G + + K +GF+ + A+ A ++
Sbjct: 139 IFIKNLDEAIDNKALHDTFAAFGNVLSCKVATDEQGRSKGYGFVHYETAEAAETAIKAVN 198
Query: 171 GHVLKGRSLKI-----------RFAPINAA---IKVKNLTSCVTNELLELAFGVFGDIER 216
G +L + + + + I A I VKNL V+ E F FG++
Sbjct: 199 GMLLNDKKVYVGHHISKKERQSKLDEIRAQFTNIYVKNLDPEVSLEEFTQLFEQFGNVTS 258
Query: 217 AIVIVDERGNSKCEGIVEF 235
A++ DE GNSK G V F
Sbjct: 259 AVIQTDEEGNSKGFGFVNF 277
>gi|148698435|gb|EDL30382.1| mCG5546, isoform CRA_a [Mus musculus]
Length = 632
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 30 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 89
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 90 NFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 149
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 150 DENG-SKGYAFVHFETQEAADKAIEK 174
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 75/161 (46%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + ++ ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 210 VYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMN 269
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+++ + R+ +N + +KNL + +E L
Sbjct: 270 GKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 327
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 328 RREFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 367
>gi|410076202|ref|XP_003955683.1| hypothetical protein KAFR_0B02500 [Kazachstania africana CBS 2517]
gi|372462266|emb|CCF56548.1| hypothetical protein KAFR_0B02500 [Kazachstania africana CBS 2517]
Length = 582
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 77/149 (51%), Gaps = 17/149 (11%)
Query: 101 SEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRM 156
SE Q D +N+ LY+G++ ++E + ++F P G + + ++ + G+ +
Sbjct: 30 SEGQQSD---SNSTSLYVGDLDPSVSEALLYDIFSPIGSVTSIRVCRDAITKTSLGYAYV 86
Query: 157 DYK-HNADK-AKAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLEL 206
++ H A K A +L+ +KGR +I ++ + A++ +KNL + + N+ L
Sbjct: 87 NFADHEAGKVAIERLNYTPIKGRLCRIMWSQRDPALRKKGNGNIFIKNLNADIDNKALYD 146
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEF 235
F VFG+I + + DE GNSK G V F
Sbjct: 147 TFSVFGNILSSKIATDENGNSKGFGFVHF 175
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 33/166 (19%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINK-----EKMFGFIRMDYKHNADKA 165
AN +Y+ N+ D TE + ELF+ G+T + + K K FGF+ + +A KA
Sbjct: 218 ANFTNVYVKNVPLDTTEEEFKELFEKPGKTSSIVLEKGEDGKLKGFGFVNYENHEDALKA 277
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+L+ KG+ L + ++ +N + +KNL +
Sbjct: 278 VEELNNTEFKGQELYVGRAQKKYERMQALKQQYEATRLEKMAKYQGVN--LFIKNLDDSI 335
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+E L+ F FG I V+ E G SK G V F+ A +A+
Sbjct: 336 DDEKLKEEFAPFGTITSTKVMRTENGKSKGFGFVCFSSPEEATKAI 381
>gi|73909065|gb|AAH45608.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 73/146 (50%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKL 169
LY+G++ D+TE + E F P G + I ++ + + ++ + +A+ A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ VKNL + N+ L FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F AA +A+++
Sbjct: 133 DENG-SKGYGFVHFETHEAAERAIKK 157
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + +LF +G + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
AF FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + +G + N K +GF+ + A++A K++G
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L GR S K R A + A K +KN + +E L+ FG FG
Sbjct: 161 MLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAV 248
>gi|402854031|ref|XP_003891684.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Papio anubis]
Length = 631
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 30/159 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGR---------------SLKIRFAPIN---------AAIKVKNLTSCVTNELLEL 206
G + G+ LK +F + + +KNL + +E L
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 313 EFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
Score = 39.3 bits (90), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|395853072|ref|XP_003799044.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Otolemur
garnettii]
Length = 633
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+ + + R+ +N + +KNL + +E L
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
Score = 38.9 bits (89), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|338721952|ref|XP_003364452.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Equus
caballus]
Length = 631
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+ + + R+ +N + +KNL + +E L
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
Score = 38.9 bits (89), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|332248417|ref|XP_003273360.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|383411099|gb|AFH28763.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
gi|384941234|gb|AFI34222.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
Length = 631
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 30/159 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGR---------------SLKIRFAPIN---------AAIKVKNLTSCVTNELLEL 206
G + G+ LK +F + + +KNL + +E L
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 313 EFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
Score = 38.9 bits (89), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|344287655|ref|XP_003415568.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Loxodonta
africana]
Length = 631
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+ + + R+ +N + +KNL + +E L
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
Score = 38.9 bits (89), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|403292062|ref|XP_003937076.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 630
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 30/159 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGR---------------SLKIRFAPIN---------AAIKVKNLTSCVTNELLEL 206
G + G+ LK +F + + +KNL + +E L
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 313 EFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
Score = 38.9 bits (89), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPNGKSKGFGFVSYEKHEDANKAV 248
>gi|291408596|ref|XP_002720594.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oryctolagus cuniculus]
Length = 614
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAA--------IKVKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + + I +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLHKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + + A++A K++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + +E L+ FG FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAV 248
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + +LF +G + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
>gi|224081795|ref|XP_002196994.1| PREDICTED: polyadenylate-binding protein 4 [Taeniopygia guttata]
Length = 629
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ DITE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQDAADRAIEK 157
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 30/159 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + ELF YG+T + + K K FGF+ + A+KA +++
Sbjct: 193 VYIKNFGDDMDDERLKELFGKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEEANKAVEEMN 252
Query: 171 GHVLKGR---------------SLKIRFAPIN---------AAIKVKNLTSCVTNELLEL 206
G + G+ LK RF + + +KNL + +E L
Sbjct: 253 GKDINGKMLFVGRAQKKAERQAELKRRFEQLKQERLSRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 313 EFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + AD+A K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + +E L+ FG +G
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFGKYGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V F + A +A+
Sbjct: 221 KVMTDPTGKSKGFGFVSFEKHEEANKAV 248
>gi|208431836|ref|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [Homo sapiens]
gi|332808512|ref|XP_003308043.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730718|ref|XP_003775778.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pongo abelii]
gi|426329064|ref|XP_004025564.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Gorilla
gorilla gorilla]
gi|119627671|gb|EAX07266.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_f [Homo sapiens]
gi|410227602|gb|JAA11020.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 30/159 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGR---------------SLKIRFAPIN---------AAIKVKNLTSCVTNELLEL 206
G + G+ LK +F + + +KNL + +E L
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 313 EFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
Score = 38.9 bits (89), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPNGKSKGFGFVSYEKHEDANKAV 248
>gi|82802761|gb|ABB92431.1| PABP3 [Aotus trivirgatus]
Length = 629
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 71/149 (47%), Gaps = 15/149 (10%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGE------TQELFINKEKMFGFIRMDYKHNADKAK 166
LY+G++ D+TE + E F P G ++L + + ++ + +A+ A
Sbjct: 10 TASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKDAEHAL 69
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
++ V+KG+ ++I ++ + +++ VKNL + N+ L FG+I
Sbjct: 70 DTMNFDVIKGKPVRIMWSQHDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCK 129
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALRR 247
V+ DE G SK G V F AA +A+ +
Sbjct: 130 VVCDENG-SKGYGFVHFETHEAAERAIEK 157
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + +LF +G + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
AF FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
Score = 39.3 bits (90), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + +G + N K +GF+ + A++A K++G
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + +E L+ FG FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F + A +A+
Sbjct: 221 KVMTDESGKSKGFGFVSFEKHEDAQKAV 248
>gi|328852276|gb|EGG01423.1| hypothetical protein MELLADRAFT_39080 [Melampsora larici-populina
98AG31]
Length = 701
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 80/175 (45%), Gaps = 22/175 (12%)
Query: 93 GPTLDLPPSEPQNKDIKFAN-------NCRLYLGNIGGDITENDIIELFKPYGETQELFI 145
P L+ P S P + N N LY+G + +TE + E+F G + +
Sbjct: 30 APALNTP-SAPSSVSTATPNASPASQPNTSLYVGELDPTVTEAMLYEIFSMIGPVSSIRV 88
Query: 146 NKEKM----FGFIRMDYKHNADKAKA--KLDGHVLKGRSLKIRFAPINAAIK-------- 191
++ + G+ ++Y + AD +A +L+ ++K ++ +I ++ + +++
Sbjct: 89 CRDAVTRRSLGYAYVNYLNAADAERALEQLNYSLIKNKACRIMWSQRDPSLRKTGQGNIF 148
Query: 192 VKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALR 246
+KNL + N+ L F FGDI V +D G SK G V + +A A++
Sbjct: 149 IKNLDETIDNKALHDTFAAFGDILSCKVAMDSTGASKGYGFVHYVTAESAEAAIK 203
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 67/166 (40%), Gaps = 33/166 (19%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKA 165
A+ LY+ N+ ++T ++ E+F YG + K + FGF+ + +A KA
Sbjct: 235 AHFTNLYIKNLPTEVTTEELNEMFSKYGPVTSAAVQADESGKHRGFGFVNYENHESASKA 294
Query: 166 KAKLDGHVLKGRSL--------------------------KIRFAPINAAIKVKNLTSCV 199
L KG L +++ +N + +KNL
Sbjct: 295 VEALHDKDYKGNILYVARAQKRVERDAELRRAHEQQKYETTLKYQGVN--LYIKNLDDEY 352
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+E L+ F FG I V+ D++G S+ G V F+ A +A+
Sbjct: 353 DDEKLQAEFLPFGTITSCKVMKDDKGVSRGFGFVCFSAPDEATKAV 398
>gi|294659673|ref|XP_002770625.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
gi|218511736|sp|Q6BI95.2|PABP_DEBHA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|199434145|emb|CAR65959.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
Length = 627
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 33/166 (19%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKA 165
AN +Y NI D +E + +LF+ YG+ +++ K+ K FGF+ + +A KA
Sbjct: 229 ANFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKA 288
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+L+ + G+ + + ++ +N + +KNL +
Sbjct: 289 VDELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVN--LFIKNLDDTI 346
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+E LE F FG I A V+VDE G SK G V F+ A +A+
Sbjct: 347 DSEKLEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATKAI 392
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 64/137 (46%), Gaps = 14/137 (10%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAK 166
+ LY+G + + E + E+F P G+ + + ++ + + ++ + +KA
Sbjct: 50 SASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAI 109
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
L+ +++GR +I ++ + +++ +KNL + N+ L F FG I
Sbjct: 110 EDLNYSLIEGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFGKILSCK 169
Query: 219 VIVDERGNSKCEGIVEF 235
V D+ G SKC G V +
Sbjct: 170 VATDDMGISKCFGFVHY 186
>gi|237833723|ref|XP_002366159.1| polyadenylate-binding protein, putative [Toxoplasma gondii ME49]
gi|211963823|gb|EEA99018.1| polyadenylate-binding protein, putative [Toxoplasma gondii ME49]
Length = 768
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 76/147 (51%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYK--HNADKAKAKL 169
LY+G++ D+TE + E+F G + + ++ + G+ ++Y+ +A+++ L
Sbjct: 85 LYVGDLHQDVTEAMLFEVFNSVGPVTSIRVCRDTVTRRSLGYAYVNYQGIQDAERSLDTL 144
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ +I + + +++ VKNL + N+ L F +FG+I V V
Sbjct: 145 NYTVIKGQPCRIMWCHRDPSLRKSGNGNIFVKNLDKNIDNKALYDTFSLFGNILSCKVAV 204
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
D+ G+SK G V + + +A A+ +
Sbjct: 205 DDNGHSKGYGFVHYENEESARSAIDKV 231
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 182 RFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAA 241
RF +N + +KN+ + +E L F FG I A V+ DERG S+C G V F A
Sbjct: 384 RFQGVN--LYIKNMDDSIDDEKLRQLFEPFGSITSAKVMRDERGVSRCFGFVCFMSPEEA 441
Query: 242 AQAL 245
+A+
Sbjct: 442 TKAV 445
>gi|66472414|ref|NP_001018503.1| ribonucleoprotein, PTB-binding 1 [Danio rerio]
gi|63101998|gb|AAH95698.1| Ribonucleoprotein, PTB-binding 1 [Danio rerio]
Length = 313
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 2/137 (1%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168
+F N ++ + N+ DI+ ++ EL Y + + F++K K F+ + A A +
Sbjct: 87 EFYNRRKIIIKNLPADISNQEVHELLGNY-DLKYCFVDKYKGTAFVTLLNGEQAQFAIKE 145
Query: 169 LDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNS 227
+VL+ R + ++ P +A + + NL T + E FG+IER ++ G+S
Sbjct: 146 FHQYVLRDREISVQLQPTDALLCIANLPRAFTQQQFEELVRPFGNIERCFLVHSATTGHS 205
Query: 228 KCEGIVEFARKPAAAQA 244
K G VE+ +K +AA+A
Sbjct: 206 KGYGFVEYMKKDSAARA 222
>gi|348553000|ref|XP_003462315.1| PREDICTED: polyadenylate-binding protein 4-like isoform 4 [Cavia
porcellus]
Length = 631
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 30/159 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + ++ ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGR---------------SLKIRFAPIN---------AAIKVKNLTSCVTNELLEL 206
G + G+ LK +F + + +KNL + +E L
Sbjct: 253 GKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 313 EFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
Score = 38.5 bits (88), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|326925507|ref|XP_003208955.1| PREDICTED: ribonucleoprotein PTB-binding 2-like [Meleagris
gallopavo]
Length = 610
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
Query: 126 TENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185
T +I +LFK Y E + ++++ K F+ + A A K + L+G+ + ++ P
Sbjct: 12 TPWEIHDLFKDY-EIKYCYVDRNKRTAFVTLLNGEQAQNAIQKFHQYSLRGKEISVQLQP 70
Query: 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQA 244
+A + + NL T E E +G++ER ++ +E G+SK G VE+ +K +AA+A
Sbjct: 71 TDALLCITNLPISFTLEEFEELVRAYGNVERCFLVYNEVTGHSKGYGFVEYMKKDSAAKA 130
>gi|126342328|ref|XP_001373103.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 942
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 75/149 (50%), Gaps = 15/149 (10%)
Query: 114 CRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA-- 167
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +
Sbjct: 316 ASLYVGDLHHDVTEAMLYEKFSPAGPILSIRVCRDMLTRRSLGYAYVNFQQLADAERVLE 375
Query: 168 KLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIV 219
++ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V
Sbjct: 376 TMNLDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLEKSIDNKALYKTFSAFGNILSCKV 435
Query: 220 IVDERGNSKCEGIVEFARKPAAAQALRRC 248
I DE G SK G V F + AA +A+ +
Sbjct: 436 ISDENG-SKGYGFVHFENQQAADKAIEKM 463
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 71/163 (43%), Gaps = 34/163 (20%)
Query: 114 CRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAK 168
+Y+ N G D+ + + E+F +G + + K K FGF+ + +A +A +
Sbjct: 496 TNVYIKNFGEDMDNDRLTEVFGKFGHALSVKVMTDESGKSKGFGFVSYEKHEDAQRAVDE 555
Query: 169 LDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNE 202
++G G+ + + R+ +N + VKNL + +E
Sbjct: 556 MNGKEFNGKRIYVGRAQKKGERQTELKRHFEQVKQERSSRYQGVN--LYVKNLDDSIDDE 613
Query: 203 LLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
L AF FG I A V++ E G+S+ G V F+ AA+A+
Sbjct: 614 RLRKAFSPFGTITSAKVMM-EGGHSRGFGFVCFSAPEEAAKAV 655
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + + ADKA K++G
Sbjct: 406 IFIKNLEKSIDNKALYKTFSAFGNILSCKVISDENGSKGYGFVHFENQQAADKAIEKMNG 465
Query: 172 --------HVLKGRSLKIRFAPINA------AIKVKNLTSCVTNELLELAFGVFGDIERA 217
+V + +S K R + A + +KN + N+ L FG FG
Sbjct: 466 VRLNNLKVYVGRFKSRKERELELGARAREFTNVYIKNFGEDMDNDRLTEVFGKFGHALSV 525
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V + + A +A+
Sbjct: 526 KVMTDESGKSKGFGFVSYEKHEDAQRAV 553
>gi|448519634|ref|XP_003868121.1| poly(A)-binding protein [Candida orthopsilosis Co 90-125]
gi|380352460|emb|CCG22686.1| poly(A)-binding protein [Candida orthopsilosis]
Length = 638
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 14/138 (10%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA 167
N+ LY+G + + E + E+F P G+ + + ++ K G+ ++Y D KA
Sbjct: 59 NSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKFEDGEKA 118
Query: 168 --KLDGHVLKGRSLKIRFAPINAA--------IKVKNLTSCVTNELLELAFGVFGDIERA 217
+L+ +++ R +I ++ + + I +KNL + N+ L F FG I
Sbjct: 119 IDELNYSLIENRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGRILSC 178
Query: 218 IVIVDERGNSKCEGIVEF 235
V D+ G SKC G V +
Sbjct: 179 KVATDDLGQSKCFGFVHY 196
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 29/164 (17%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKA 165
AN +Y+ NI + +E + +LF PYG+ +++ K+ K FGF+ + +A +A
Sbjct: 239 ANYTNIYVKNIDLEFSEKEFEDLFAPYGKITSIYLEKDQDGKSKGFGFVNYEEHKSAVEA 298
Query: 166 KAKLDGHVLKGRSL--------------------KIRFAPIN----AAIKVKNLTSCVTN 201
L+ + G+ + IR ++ + VKNL + +
Sbjct: 299 VEALNDKEINGQKIYVGRAQKKRERTEELKKQYEAIRLEKLSKYQGVNLFVKNLDDQIDS 358
Query: 202 ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
E LE F FG I A V+VD+ G S+ G V F+ A +A+
Sbjct: 359 EKLEEEFKPFGTITSAKVMVDDAGKSRGFGFVCFSTPEEATKAI 402
>gi|342183460|emb|CCC92940.1| putative polyadenylate-binding protein 1 [Trypanosoma congolense
IL3000]
Length = 552
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 74/144 (51%), Gaps = 14/144 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKL 169
LY+G++ I+E ++E+F+PYG + + ++ + +G++ D ++A KA ++
Sbjct: 23 LYVGDLDPAISEPQLVEIFRPYGTILNVRVCRDIITQRSLGYGYVNYDNANSATKAMEEM 82
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ + + ++I + + A++ VKNL V + L L F FG+I V+
Sbjct: 83 NFKRVGEKCIRIMWQQRDPALRYSGNGNVFVKNLKGEVDSRELSLIFKKFGEILSCKVMD 142
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE GNS+ G V F AA A+
Sbjct: 143 DESGNSRGYGFVHFKDDNAAKSAI 166
Score = 38.5 bits (88), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLD 170
LY+ N + TE D+ ELFK YG + + + + FGF+ + A+ A ++
Sbjct: 305 LYVRNFDPEFTEKDLNELFKEYGVIRSCRVMTDANGVSRGFGFVSFENADQANAALREMS 364
Query: 171 GHVLKGRSLKIRFA 184
G +L G+ L + A
Sbjct: 365 GRMLNGKPLVVNIA 378
>gi|410966844|ref|XP_003989937.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Felis catus]
Length = 631
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+ + + R+ +N + +KNL + +E L
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
Score = 38.9 bits (89), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|41152034|ref|NP_958453.1| polyadenylate-binding protein 4 [Danio rerio]
gi|31419252|gb|AAH53126.1| Poly(A) binding protein, cytoplasmic 4 (inducible form) [Danio
rerio]
Length = 637
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ DITE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 14 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 73
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 74 NFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 133
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 134 DENG-SKGYAFVHFETQDAADRAIEK 158
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 30/159 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + ELF YG+T + + K + FGF+ + +A+KA +++
Sbjct: 194 VYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMN 253
Query: 171 GHVLKGRS---------------LKIRFAPIN---------AAIKVKNLTSCVTNELLEL 206
G L G++ LK +F + + +KNL + +E L
Sbjct: 254 GTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 313
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V+++E G SK G V F+ A +A+
Sbjct: 314 EFSPFGSITSAKVMLEE-GRSKGFGFVCFSSPEEATKAV 351
>gi|393245425|gb|EJD52935.1| polyadenylate binding protein [Auricularia delicata TFB-10046 SS5]
Length = 665
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 72/145 (49%), Gaps = 14/145 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KAKAKL 169
LY+G + +TE + E+F G + + ++ + G+ ++Y + AD +A +L
Sbjct: 49 LYVGELDPSVTEAMLFEVFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALDQL 108
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++K R+ +I ++ + A++ +KNL + N+ L F FG++ V
Sbjct: 109 NYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVAT 168
Query: 222 DERGNSKCEGIVEFARKPAAAQALR 246
DE GNSK G V + AA A++
Sbjct: 169 DEHGNSKGYGFVHYETAEAAENAIK 193
>gi|147785105|emb|CAN75447.1| hypothetical protein VITISV_030926 [Vitis vinifera]
Length = 632
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 20/169 (11%)
Query: 102 EPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRM 156
+P + FAN +++ N+ I +++ F +G I + K +GF++
Sbjct: 118 DPSIRKSGFAN---VFIKNLDPSIDNKALLDTFAAFGTVLSCKIALDNNGQSKGYGFVQF 174
Query: 157 DYKHNADKAKAKLDGHVLKGRSLKIRF------------APINAAIKVKNLTSCVTNELL 204
+ + A A +L+G ++ + + + +P + VKNL+ T++ L
Sbjct: 175 EQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQERNXGNGSPKFTNVYVKNLSETTTDDDL 234
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCF 253
+ FG +G I A+V+ D G SKC G V F +AA A+ F
Sbjct: 235 KNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLNGATF 283
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 69/150 (46%), Gaps = 14/150 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAK 166
N LY+G++ I E + +LF+ + + +++ + ++ +A A
Sbjct: 38 NASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATNAL 97
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
L+ L G+ ++I F+ + +I+ +KNL + N+ L F FG +
Sbjct: 98 EHLNFTPLNGKPIRIMFSHRDPSIRKSGFANVFIKNLDPSIDNKALLDTFAAFGTVLSCK 157
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALRRC 248
+ +D G SK G V+F ++ AA A++R
Sbjct: 158 IALDNNGQSKGYGFVQFEQEEAAQNAIKRL 187
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 68/171 (39%), Gaps = 33/171 (19%)
Query: 105 NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYK 159
N KF N +Y+ N+ T++D+ +F YG + ++ K FGF+
Sbjct: 212 NGSPKFTN---VYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSS 268
Query: 160 HNADKAKAKLDG---------HVLKGRSLKIRFAPINAA----------------IKVKN 194
+A A L+G +V K + R A + A + +KN
Sbjct: 269 DSAAAAVEHLNGATFNDDKVWYVGKAQRKSEREAELRAKFEQERKNKFEKFKGXNLYLKN 328
Query: 195 LTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
L V +E L F FG I V++D +G SK G V F A +AL
Sbjct: 329 LDDSVNDEKLXELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATRAL 379
>gi|149044564|gb|EDL97823.1| similar to hypothetical protein FLJ10770 (predicted) [Rattus
norvegicus]
Length = 603
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 68/137 (49%), Gaps = 2/137 (1%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168
+ +N ++ + N+ D + ++ EL + Y E + ++++ K F+ + A A +
Sbjct: 53 ELSNRRKILVKNLPQDSSSQEVHELLQDY-ELKYCYVDRNKRTAFVTLLNGEQAQSAIQR 111
Query: 169 LDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGNS 227
+GR L ++ P +A + + NL T E E +G+IER ++ E G+S
Sbjct: 112 FHQFSFRGRELTVQLQPTDALLCITNLPVSFTLEEFEELVRAYGNIERCFLVYSEVTGHS 171
Query: 228 KCEGIVEFARKPAAAQA 244
K G VE+ +K AA+A
Sbjct: 172 KGYGFVEYMKKDFAAKA 188
>gi|13430610|gb|AAK25927.1|AF360217_1 putative poly(A) binding protein [Arabidopsis thaliana]
Length = 662
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 25/151 (16%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKHNADKAKAKLD 170
L++ N+ + + E F G + + M +GF++ D + +A A KL+
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLN 195
Query: 171 GHVLKGRSL----------------KIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDI 214
G VL + + K++F + VKNL+ T++ L+ FG +G I
Sbjct: 196 GKVLNDKQIFVGPFLRKEERESAADKMKFT----NVYVKNLSEATTDDELKTTFGQYGSI 251
Query: 215 ERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
A+V+ D G S+C G V F AA+A+
Sbjct: 252 SSAVVMRDGDGKSRCFGFVNFENPEDAARAV 282
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 71/148 (47%), Gaps = 14/148 (9%)
Query: 114 CRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKA 167
C LY+G++ ++T++ + + F + + + ++ +G++ +A+KA
Sbjct: 46 CSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQ 105
Query: 168 KLDGHVLKGRSLKIRFAPINAA--------IKVKNLTSCVTNELLELAFGVFGDIERAIV 219
KL+ L G+ ++I ++ +++ + VKNL V N+ L AF G I V
Sbjct: 106 KLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKV 165
Query: 220 IVDERGNSKCEGIVEFARKPAAAQALRR 247
D G S+ G V+F + +A A+ +
Sbjct: 166 ATDHMGQSRGYGFVQFDTEDSAKNAIEK 193
>gi|119612222|gb|EAW91816.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
gi|119612227|gb|EAW91821.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
Length = 419
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 76/146 (52%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + + A++A K++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + +E L+ FG FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAV 248
Score = 42.0 bits (97), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 99/240 (41%), Gaps = 51/240 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + +LF +G + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264
F FG I A V++ E G SK G V F+ A +A+ + R V
Sbjct: 311 RKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTE---------MNGRIVAT 360
Query: 265 EPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETE 324
+PL + L++R K+ + + Q R A+V + + ++ LH Y ++E
Sbjct: 361 KPLYV-----ALAQR---KEERQAHLTNQYMQRMASVRAVPNPASTSFRLLHGSYPTDSE 412
>gi|187956894|gb|AAI58031.1| 1810053B01Rik protein [Mus musculus]
Length = 607
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 76/144 (52%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE+ + E+F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + ++ +KNL + + N+ L F FG I + V+
Sbjct: 73 NFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVY 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
+E G S+ G V F AA +A+
Sbjct: 133 NEHG-SRGFGFVHFETHEAAQKAI 155
Score = 41.6 bits (96), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 67/148 (45%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGE--TQELFINKE--KMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + ++ N+ + FGF+ + A KA ++G
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMNG 160
Query: 172 HVLKGRSLKI--------RFAPINA------AIKVKNLTSCVTNELLELAFGVFGDIERA 217
+L R + + R A + A I VKNL + V + L+ F FG+++
Sbjct: 161 MLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G S+ G V F + A +A+
Sbjct: 221 KVMRDSNGQSRGFGFVNFEKHEEAQKAV 248
>gi|166157896|ref|NP_001107551.1| polyadenylate-binding protein 1-like [Mus musculus]
gi|187960776|gb|ACD43645.1| embryonic poly(A)-binding protein [Mus musculus]
Length = 607
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 76/144 (52%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE+ + E+F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + ++ +KNL + + N+ L F FG I + V+
Sbjct: 73 NFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVY 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
+E G S+ G V F AA +A+
Sbjct: 133 NEHG-SRGFGFVHFETHEAAQKAI 155
Score = 41.6 bits (96), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 67/148 (45%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGE--TQELFINKE--KMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + ++ N+ + FGF+ + A KA ++G
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMNG 160
Query: 172 HVLKGRSLKI--------RFAPINA------AIKVKNLTSCVTNELLELAFGVFGDIERA 217
+L R + + R A + A I VKNL + V + L+ F FG+++
Sbjct: 161 MLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G S+ G V F + A +A+
Sbjct: 221 KVMRDSNGQSRGFGFVNFEKHEEAQKAV 248
>gi|15227815|ref|NP_179916.1| poly(A) binding protein 4 [Arabidopsis thaliana]
gi|2642429|gb|AAB87097.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|15292851|gb|AAK92796.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|19310779|gb|AAL85120.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330252352|gb|AEC07446.1| poly(A) binding protein 4 [Arabidopsis thaliana]
Length = 662
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 25/151 (16%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKHNADKAKAKLD 170
L++ N+ + + E F G + + M +GF++ D + +A A KL+
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLN 195
Query: 171 GHVLKGRSL----------------KIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDI 214
G VL + + K++F + VKNL+ T++ L+ FG +G I
Sbjct: 196 GKVLNDKQIFVGPFLRKEERESAADKMKFT----NVYVKNLSEATTDDELKTTFGQYGSI 251
Query: 215 ERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
A+V+ D G S+C G V F AA+A+
Sbjct: 252 SSAVVMRDGDGKSRCFGFVNFENPEDAARAV 282
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 71/148 (47%), Gaps = 14/148 (9%)
Query: 114 CRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKA 167
C LY+G++ ++T++ + + F + + + ++ +G++ +A+KA
Sbjct: 46 CSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQ 105
Query: 168 KLDGHVLKGRSLKIRFAPINAA--------IKVKNLTSCVTNELLELAFGVFGDIERAIV 219
KL+ L G+ ++I ++ +++ + VKNL V N+ L AF G I V
Sbjct: 106 KLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKV 165
Query: 220 IVDERGNSKCEGIVEFARKPAAAQALRR 247
D G S+ G V+F + +A A+ +
Sbjct: 166 ATDHMGQSRGYGFVQFDTEDSAKNAIEK 193
>gi|126320658|ref|XP_001364500.1| PREDICTED: polyadenylate-binding protein 4-like [Monodelphis
domestica]
Length = 630
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQDAADRAIEK 157
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 30/159 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + ELF YG+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMN 252
Query: 171 GHVLKGR---------------SLKIRFAPIN---------AAIKVKNLTSCVTNELLEL 206
G + G+ LK +F + + +KNL + +E L
Sbjct: 253 GKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 313 EFSPFGSITSAKVMLED-GRSKGFGFVCFSSPDEATKAV 350
>gi|157125851|ref|XP_001654419.1| polyadenylate-binding protein [Aedes aegypti]
gi|157125853|ref|XP_001654420.1| polyadenylate-binding protein [Aedes aegypti]
gi|94468824|gb|ABF18261.1| polyadenylate-binding protein [Aedes aegypti]
gi|108873484|gb|EAT37709.1| AAEL010318-PB [Aedes aegypti]
gi|108873485|gb|EAT37710.1| AAEL010318-PA [Aedes aegypti]
Length = 628
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 75/147 (51%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ DITE + E F G + + ++ + G+ ++++ AD +A +
Sbjct: 4 LYVGDLHADITEAILFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++KGR ++I ++ + +++ +KNL + N+ + F FG+I V
Sbjct: 64 NFDLIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQ 123
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE+GNSK G V F + +A ++ +
Sbjct: 124 DEKGNSKGYGFVHFETEESANTSIEKV 150
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 30/159 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGE--TQELFIN--KEKMFGFIRMDYKHNADKAKAKLDG 171
+Y+ N G ++ + + E+F+ YG + + I K + FGF+ + +A+ A +L+G
Sbjct: 185 VYVKNFGDELNDETLKEMFEKYGTITSHRVMIKDGKSRGFGFVAFENPESAEHAVQELNG 244
Query: 172 HVL-------KGRS---------LKIRFAPIN---------AAIKVKNLTSCVTNELLEL 206
L GR+ LK RF + + VKNL + +E L
Sbjct: 245 KELGEGKILYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVNLYVKNLDDSIDDERLRK 304
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V+++E G SK G V F+ A +A+
Sbjct: 305 EFSPFGTITSAKVMLEE-GRSKGFGFVCFSAAEEATKAV 342
>gi|426215230|ref|XP_004001877.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Ovis aries]
Length = 631
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 74/161 (45%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + ++ ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+ + + R+ +N + +KNL + +E L
Sbjct: 253 GKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
Score = 38.5 bits (88), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|348552998|ref|XP_003462314.1| PREDICTED: polyadenylate-binding protein 4-like isoform 3 [Cavia
porcellus]
Length = 615
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 30/159 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + ++ ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGR---------------SLKIRFAPIN---------AAIKVKNLTSCVTNELLEL 206
G + G+ LK +F + + +KNL + +E L
Sbjct: 253 GKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 313 EFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
>gi|156554126|ref|XP_001604025.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Nasonia
vitripennis]
Length = 627
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 75/147 (51%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ DITE + E F G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDAVTRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++KGR ++I ++ + +++ +KNL + N+ + F FG+I V
Sbjct: 73 NFDIIKGRPIRIMWSQRDPSLRRSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCRVAQ 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE G+SK G V F + AA +++ R
Sbjct: 133 DESGSSKGYGFVHFETEEAANKSIDRV 159
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 35/162 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGE-TQELFINKE----KMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+T++ + E+F+ YG T ++K+ + FGF+ + + AD+A A L+
Sbjct: 194 VYVKNFGEDMTDDKLKEMFEKYGTITSHKVMSKDDGKSRGFGFVAFEDPNAADRAVADLN 253
Query: 171 GHVL-----------------------KGRSLKI----RFAPINAAIKVKNLTSCVTNEL 203
G + K LKI R+ +N + VKNL + +E
Sbjct: 254 GKEIAEGKIMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVN--LYVKNLDDTIDDER 311
Query: 204 LELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
L F FG I V++++ G SK G V F+ A +A+
Sbjct: 312 LRKEFAPFGTITSVKVMMED-GRSKGFGFVCFSLAEEATKAV 352
>gi|126330205|ref|XP_001365269.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Monodelphis
domestica]
Length = 630
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQDAADRAIEK 157
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 30/159 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + ELF YG+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMN 252
Query: 171 GHVLKGR---------------SLKIRFAPIN---------AAIKVKNLTSCVTNELLEL 206
G + G+ LK +F + + +KNL + +E L
Sbjct: 253 GKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 313 EFSPFGSITSAKVMLED-GRSKGFGFVCFSSPDEATKAV 350
>gi|395526571|ref|XP_003765434.1| PREDICTED: polyadenylate-binding protein 4 [Sarcophilus harrisii]
Length = 630
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQDAADRAIEK 157
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 30/159 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + ELF YG+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDSSGKSKGFGFVSFEKHEDANKAVEEMN 252
Query: 171 GHVLKGR---------------SLKIRFAPIN---------AAIKVKNLTSCVTNELLEL 206
G + G+ LK +F + + +KNL + +E L
Sbjct: 253 GKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 313 EFSPFGSITSAKVMLED-GRSKGFGFVCFSSPDEATKAV 350
>gi|148698929|gb|EDL30876.1| ribonucleoprotein, PTB-binding 2, isoform CRA_b [Mus musculus]
Length = 554
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 68/137 (49%), Gaps = 2/137 (1%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168
+ +N ++ + N+ D + ++ EL + Y E + ++++ K F+ + A A +
Sbjct: 4 ELSNRRKILVKNLPQDSSSQEVHELLQDY-ELKYCYVDRNKRTAFVTLLNGEQAQSAIQR 62
Query: 169 LDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGNS 227
+GR L ++ P +A + + NL T E E +G+IER ++ E G+S
Sbjct: 63 FHQFSFRGRELTVQLQPTDALLCITNLPISFTLEEFEELVRAYGNIERCFLVYSEVTGHS 122
Query: 228 KCEGIVEFARKPAAAQA 244
K G VE+ +K AA+A
Sbjct: 123 KGYGFVEYMKKDFAAKA 139
>gi|82802755|gb|ABB92428.1| PABP3 [Pongo pygmaeus]
Length = 635
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 71/146 (48%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGE------TQELFINKEKMFGFIRMDYKHNADKAKAKL 169
LY+G++ D+TE + E F P G ++L + + ++ + +A+ A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKDAEHALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ VKNL + N+ L FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQHDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETHEAAERAIEK 157
Score = 42.4 bits (98), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + +LF +G + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVN--LYVKNLDDDIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
AF FG I A V++ E G S+ G V F+ A +A+
Sbjct: 311 RKAFSPFGTITSAKVMM-EGGRSRGFGFVCFSSPEEATKAV 350
Score = 38.5 bits (88), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + +G + N K +GF+ + A++A K++G
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + +E L+ FG FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F + A +A+
Sbjct: 221 KVMTDESGKSKGFGFVSFEKHEDAQKAV 248
>gi|221061487|ref|XP_002262313.1| polyadenylate-binding protein [Plasmodium knowlesi strain H]
gi|193811463|emb|CAQ42191.1| polyadenylate-binding protein, putative [Plasmodium knowlesi strain
H]
Length = 874
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 74/149 (49%), Gaps = 14/149 (9%)
Query: 114 CRLYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA-- 167
LY+G++ D+TE + E+F G + + ++ K G+ ++Y + AD +A
Sbjct: 16 ASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALD 75
Query: 168 KLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIV 219
L+ +KG+ ++ ++ + +++ VKNL + N+ L F +FG+I V
Sbjct: 76 TLNYTNIKGQPARLMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFGNILSCKV 135
Query: 220 IVDERGNSKCEGIVEFARKPAAAQALRRC 248
DE G SK G V + + +A +A+ +
Sbjct: 136 ATDEFGKSKSYGFVHYEDEESAKEAIEKV 164
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 101 SEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI---NKEKMFGFIRMD 157
SE D KF N LY+ N +TE + +LF PYGE + + NK + F FI
Sbjct: 183 SERATNDTKFTN---LYVKNFPDSVTEAHLKQLFSPYGEITSMIVKTDNKNRKFCFINYA 239
Query: 158 YKHNADKAKAKLDG 171
+A A L+G
Sbjct: 240 DSESAKNAMENLNG 253
>gi|170044609|ref|XP_001849934.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
gi|167867688|gb|EDS31071.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
Length = 628
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 75/147 (51%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ DITE + E F G + + ++ + G+ ++++ AD +A +
Sbjct: 4 LYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++KGR ++I ++ + +++ +KNL + N+ + F FG+I V
Sbjct: 64 NFDLIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQ 123
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE+GNSK G V F + +A ++ +
Sbjct: 124 DEKGNSKGYGFVHFETEESANTSIEKV 150
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 30/159 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGE--TQELFI--NKEKMFGFIRMDYKHNADKAKAKL-- 169
+Y+ N G ++T+ + E+F+ YG + + I NK + FGF+ + +A+ A +L
Sbjct: 185 VYVKNFGDELTDESLKEMFEKYGTITSHRVMIKENKSRGFGFVAFENPESAEVAVQELNG 244
Query: 170 ----DGHVLK-GRS---------LKIRFAPIN---------AAIKVKNLTSCVTNELLEL 206
DG VL GR+ LK RF + + VKNL + +E L
Sbjct: 245 KELGDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVNLYVKNLDDSIDDERLRK 304
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V+++E G SK G V F+ A +A+
Sbjct: 305 EFSPFGTITSAKVMLEE-GRSKGFGFVCFSAAEEATKAV 342
>gi|297821595|ref|XP_002878680.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
gi|297324519|gb|EFH54939.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
Length = 655
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 25/151 (16%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKHNADKAKAKLD 170
L++ N+ + + E F G + + M +GF++ D + +A A KL+
Sbjct: 131 LFVKNLDKSVDNKTLHETFSGCGTIVSCKVAADHMGQSRGYGFVQFDTEDSAKNAIEKLN 190
Query: 171 GHVLKGRSL----------------KIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDI 214
G VL + + K++F + VKNL+ T++ L+ FG +G I
Sbjct: 191 GKVLNDKQIFVGPFLRKEERESAADKMKFT----NVYVKNLSEVTTDDELKTTFGQYGSI 246
Query: 215 ERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
A+V+ D G S+C G V F AA+A+
Sbjct: 247 SSAVVMRDGDGKSRCFGFVNFENPEDAARAV 277
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 70/148 (47%), Gaps = 14/148 (9%)
Query: 114 CRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKA 167
C LY+G++ ++T++ + + F + + + ++ +G++ +A+KA
Sbjct: 41 CSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTEDAEKAMQ 100
Query: 168 KLDGHVLKGRSLKIRFAPINAA--------IKVKNLTSCVTNELLELAFGVFGDIERAIV 219
KL+ L G+ ++I ++ +++ + VKNL V N+ L F G I V
Sbjct: 101 KLNYSTLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHETFSGCGTIVSCKV 160
Query: 220 IVDERGNSKCEGIVEFARKPAAAQALRR 247
D G S+ G V+F + +A A+ +
Sbjct: 161 AADHMGQSRGYGFVQFDTEDSAKNAIEK 188
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 36/169 (21%)
Query: 108 IKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNA 162
+KF N +Y+ N+ T++++ F YG + K + FGF+ + +A
Sbjct: 217 MKFTN---VYVKNLSEVTTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDA 273
Query: 163 DKAKAKLDG--------HVLKG-----RSLKI-------------RFAPINAAIKVKNLT 196
+A L+G +V K R L++ +F +N + VKNL
Sbjct: 274 ARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDAGNKFDGLN--LYVKNLD 331
Query: 197 SCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
VT+E L F FG I V+ D G SK G V F+ A++ L
Sbjct: 332 DTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVL 380
>gi|119627670|gb|EAX07265.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_e [Homo sapiens]
Length = 615
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 30/159 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGR---------------SLKIRFAPIN---------AAIKVKNLTSCVTNELLEL 206
G + G+ LK +F + + +KNL + +E L
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 313 EFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
Score = 38.5 bits (88), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPNGKSKGFGFVSYEKHEDANKAV 248
>gi|410899897|ref|XP_003963433.1| PREDICTED: embryonic polyadenylate-binding protein-like [Takifugu
rubripes]
Length = 606
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 75/145 (51%), Gaps = 17/145 (11%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKAKLDG 171
LY+G++ D+TE + + F P G + + ++ + G+ ++++ AD A+ LD
Sbjct: 13 LYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQQPAD-AECALDT 71
Query: 172 H---VLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVI 220
V+KGR ++I ++ + ++ +KN+ + N+ L F FG+I V+
Sbjct: 72 MNYDVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVV 131
Query: 221 VDERGNSKCEGIVEFARKPAAAQAL 245
DERG SK G V F + AA +A+
Sbjct: 132 CDERG-SKGYGFVHFETEEAANRAI 155
>gi|126330207|ref|XP_001365338.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Monodelphis
domestica]
Length = 614
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQDAADRAIEK 157
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 30/159 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + ELF YG+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMN 252
Query: 171 GHVLKGR---------------SLKIRFAPIN---------AAIKVKNLTSCVTNELLEL 206
G + G+ LK +F + + +KNL + +E L
Sbjct: 253 GKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 313 EFSPFGSITSAKVMLED-GRSKGFGFVCFSSPDEATKAV 350
>gi|242076392|ref|XP_002448132.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
gi|241939315|gb|EES12460.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
Length = 664
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 88/182 (48%), Gaps = 18/182 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA- 167
LY+G++ G ++++ + ELF G+ + + ++ + G+ +++ + D A+A
Sbjct: 45 TTSLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFSNPLDAARAL 104
Query: 168 -KLDGHVLKGRSLKIRFA---PI-----NAAIKVKNLTSCVTNELLELAFGVFGDIERAI 218
L+ VL + +++ ++ P +A I +KNL + N+ L F FG I
Sbjct: 105 EVLNFAVLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHETFSSFGTILSCK 164
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSE 278
V +DE G SK G V++ ++ AA A++ G + +PV V P E D +
Sbjct: 165 VAMDEAGQSKGFGFVQYEKEEAAQNAIKSL-NGMLI---NDKPVFVGPFLRKQERDHSFD 220
Query: 279 RT 280
+T
Sbjct: 221 KT 222
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 67/155 (43%), Gaps = 25/155 (16%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKA 167
+ +++ N+ I + E F +G + + K FGF++ + + A A
Sbjct: 133 SANIFIKNLDKTIDNKTLHETFSSFGTILSCKVAMDEAGQSKGFGFVQYEKEEAAQNAIK 192
Query: 168 KLDGHVLKGRSL----------------KIRFAPINAAIKVKNLTSCVTNELLELAFGVF 211
L+G ++ + + K +F + VKNL+ T E L FG +
Sbjct: 193 SLNGMLINDKPVFVGPFLRKQERDHSFDKTKFN----NVFVKNLSESTTKEDLLKVFGEY 248
Query: 212 GDIERAIVIVDERGNSKCEGIVEFARKPAAAQALR 246
G I A+V++ G S+C G + F AA++A++
Sbjct: 249 GSITSAVVMIGMDGKSRCFGFINFENPDAASRAVQ 283
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 32/166 (19%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNAD 163
KF N +++ N+ T+ D++++F YG + K + FGFI + A
Sbjct: 223 KFNN---VFVKNLSESTTKEDLLKVFGEYGSITSAVVMIGMDGKSRCFGFINFENPDAAS 279
Query: 164 KAKAKLDGHVLK------GRS---------LKIRF--APINAAIK-------VKNLTSCV 199
+A +L+G + GR+ LK RF + +AA K +KNL +
Sbjct: 280 RAVQELNGKKINDKEWYVGRAQKKSEREMELKRRFEQSLKDAADKYQGLNLYLKNLDDSI 339
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
++ L F FG I V+ D+ G SK G V F+ + A+QAL
Sbjct: 340 GDDQLRELFSNFGKITSYKVMRDQNGLSKGSGFVAFSTREEASQAL 385
>gi|156103277|ref|XP_001617331.1| polyadenylate-binding protein [Plasmodium vivax Sal-1]
gi|148806205|gb|EDL47604.1| polyadenylate-binding protein, putative [Plasmodium vivax]
Length = 883
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 74/149 (49%), Gaps = 14/149 (9%)
Query: 114 CRLYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA-- 167
LY+G++ D+TE + E+F G + + ++ K G+ ++Y + AD +A
Sbjct: 16 ASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALD 75
Query: 168 KLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIV 219
L+ +KG+ ++ ++ + +++ VKNL + N+ L F +FG+I V
Sbjct: 76 TLNYTNIKGQPARLMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFGNILSCKV 135
Query: 220 IVDERGNSKCEGIVEFARKPAAAQALRRC 248
DE G SK G V + + +A +A+ +
Sbjct: 136 ATDEFGKSKSYGFVHYEDEESAKEAIEKV 164
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 101 SEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI---NKEKMFGFIRMD 157
SE D KF N LY+ N +TE + +LF P+GE + + NK + F FI
Sbjct: 183 SERATNDTKFTN---LYVKNFPDSVTEAHLKQLFSPFGEITSMIVKTDNKNRKFCFINYA 239
Query: 158 YKHNADKAKAKLDG 171
+A A L+G
Sbjct: 240 DSESAKNAMENLNG 253
>gi|82802751|gb|ABB92426.1| PABP3 [Pan troglodytes]
Length = 632
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 72/146 (49%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKL 169
LY+G++ D+TE + E F P G + + ++ + + ++ + +A+ A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEHALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ L+I ++ + +++ VKNL + N+ L FG+I V+
Sbjct: 73 NFDVIKGKPLRIMWSQRDPSLRKSGMGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETHEAAERAIEK 157
Score = 45.1 bits (105), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + +LF +G + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVN--LYVKNLDDDIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ AF FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 QKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + +G + N K +GF+ + A++A K++G
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L GR S K R A + A K +KN + +E L+ FG FG
Sbjct: 161 MLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAV 248
>gi|317106694|dbj|BAJ53195.1| JHL03K20.4 [Jatropha curcas]
Length = 642
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 17/147 (11%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKHNADKAKAKLD 170
+Y+ N+ I + + F +G + + + +GF++ D + +A A KL+
Sbjct: 119 IYIKNLDKAIDNKALHDTFSAFGSILSCKVATDSLGQSLGYGFVQFDNEESAKNAIDKLN 178
Query: 171 GHVLKGRSLKI--------RFAPINAA----IKVKNLTSCVTNELLELAFGVFGDIERAI 218
G +L + + + R + I+ A + VKNL+ T E L+ FG +G I A+
Sbjct: 179 GMLLNDKQVYVGPFLRKQERESAIDKATFNNVYVKNLSETTTEEDLKKIFGEYGTITSAV 238
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G S+C G V F AAQ++
Sbjct: 239 VMRDGNGKSRCFGFVNFENPDDAAQSV 265
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 70/147 (47%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKL 169
LY+G++ ++TE + +LF +G+ + + ++ +G++ + H+A +A L
Sbjct: 31 LYVGDLEQNVTETQLYDLFNQHGQVVSIRVCRDLTSRRSLGYGYVNYNNVHDAAQAIEVL 90
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ + G+ ++I ++ + I+ +KNL + N+ L F FG I V
Sbjct: 91 NFTPVNGKPIRIMYSYRDPTIRKSGTGNIYIKNLDKAIDNKALHDTFSAFGSILSCKVAT 150
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
D G S G V+F + +A A+ +
Sbjct: 151 DSLGQSLGYGFVQFDNEESAKNAIDKL 177
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 33/161 (20%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N+ TE D+ ++F YG + K + FGF+ + +A ++ L+
Sbjct: 210 VYVKNLSETTTEEDLKKIFGEYGTITSAVVMRDGNGKSRCFGFVNFENPDDAAQSVEALN 269
Query: 171 GHV--------------------LKGR---SLK---IRFAPINAAIKVKNLTSCVTNELL 204
G LKGR +LK +F +N + VKNL +T++ L
Sbjct: 270 GKTFDEKEWYVGKAQKKSEREVELKGRFEQTLKETVDKFQGLN--LYVKNLDDSITDDKL 327
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ F FG I V+ D G S+ G V F+ A++AL
Sbjct: 328 KELFSEFGTITSCKVMRDPNGVSRGSGFVAFSTAEEASRAL 368
>gi|296235783|ref|XP_002763047.1| PREDICTED: uncharacterized protein LOC100399785, partial
[Callithrix jacchus]
Length = 445
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 18/145 (12%)
Query: 105 NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKH 160
N D A+ LY+G++ ++TE + E F P G + I ++K+ G+ ++Y+
Sbjct: 304 NPDFPMAS---LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQ 360
Query: 161 NADKAKA--KLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGV 210
D +A L+ V+KGR ++I ++ + +++ +KNL + N+ L F
Sbjct: 361 PVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSA 420
Query: 211 FGDIERAIVIVDERGNSKCEGIVEF 235
FG+I V DE+G K G V F
Sbjct: 421 FGNILSCKVACDEKG-PKGYGFVHF 444
>gi|344281910|ref|XP_003412719.1| PREDICTED: hypothetical protein LOC100664266 [Loxodonta africana]
Length = 708
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 74/144 (51%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ ++TE + E F P G + I ++K+ G+ ++Y+ D +A L
Sbjct: 353 LYVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 412
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + +++ +KNL + N+ L F FG+I V
Sbjct: 413 NFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSTFGNILSCKVAC 472
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE+G K G V F + +A +A+
Sbjct: 473 DEKG-PKGYGFVHFQEQESAERAI 495
>gi|395745189|ref|XP_002824146.2| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Pongo
abelii]
Length = 636
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 71/146 (48%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGE------TQELFINKEKMFGFIRMDYKHNADKAKAKL 169
LY+G++ D+TE + E F P G ++L + + ++ + +A+ A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKDAEHALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ VKNL + N+ L FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQHDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETHEAAERAIEK 157
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + +LF +G + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVN--LYVKNLDDDIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
AF FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
Score = 38.5 bits (88), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + +G + N K +GF+ + A++A K++G
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + +E L+ FG FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F + A +A+
Sbjct: 221 KVMTDESGKSKGFGFVSFEKHEDAQKAV 248
>gi|114649018|ref|XP_001154541.1| PREDICTED: polyadenylate-binding protein 3 isoform 5 [Pan
troglodytes]
Length = 633
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 72/146 (49%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKL 169
LY+G++ D+TE + E F P G + + ++ + + ++ + +A+ A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEHALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ L+I ++ + +++ VKNL + N+ L FG+I V+
Sbjct: 73 NFDVIKGKPLRIMWSQRDPSLRKSGMGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETHEAAERAIEK 157
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + +LF +G + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVN--LYVKNLDDDIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ AF FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 QKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
Score = 42.7 bits (99), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + +G + N K +GF+ + A++A K++G
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L GR S K R A + A K +KN + +E L+ FG FG
Sbjct: 161 MLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAV 248
>gi|414588971|tpg|DAA39542.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 648
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 21/150 (14%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKHNADKAKAKLD 170
+++ N+ I + + F +G I + +GF++ + +A A KL+
Sbjct: 125 IFIKNLDKSIDNKALYDTFCAFGNILSCKIATDPSGESRGYGFVQFEKDESAQSAIDKLN 184
Query: 171 GHVLKGRSLKIRFAP---------INAAIK-----VKNLTSCVTNELLELAFGVFGDIER 216
G ++ + K+ P +++ IK VKNL+ VT++ L+ FG +G I
Sbjct: 185 GMLINDK--KVFVGPFVRKQDRENVSSNIKFSNVYVKNLSDTVTDDELKEMFGKYGTITS 242
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQALR 246
A+V+ D G S+C G V F AAAQA++
Sbjct: 243 AVVMRDSDGKSRCFGFVNFENADAAAQAVQ 272
>gi|414588969|tpg|DAA39540.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 281
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 21/155 (13%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + + F +G I + + +GF++ + +A A KL+
Sbjct: 125 IFIKNLDKSIDNKALYDTFCAFGNILSCKIATDPSGESRGYGFVQFEKDESAQSAIDKLN 184
Query: 171 GHVLKGRSLKIRFAP---------INAAIK-----VKNLTSCVTNELLELAFGVFGDIER 216
G ++ + K+ P +++ IK VKNL+ VT++ L+ FG +G I
Sbjct: 185 GMLINDK--KVFVGPFVRKQDRENVSSNIKFSNVYVKNLSDTVTDDELKEMFGKYGTITS 242
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEG 251
A+V+ D G S+C G V F AAAQA++ +G
Sbjct: 243 AVVMRDSDGKSRCFGFVNFENADAAAQAVQELNDG 277
>gi|397482906|ref|XP_003812655.1| PREDICTED: polyadenylate-binding protein 3-like [Pan paniscus]
Length = 634
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 72/146 (49%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKL 169
LY+G++ D+TE + E F P G + + ++ + + ++ + +A+ A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEHALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ L+I ++ + +++ VKNL + N+ L FG+I V+
Sbjct: 73 NFDVIKGKPLRIMWSQRDPSLRKSGMGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETHEAAERAIEK 157
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + +LF +G + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVN--LYVKNLDDDIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
AF FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + +G + N K +GF+ + A++A K++G
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L GR S K R A + A K +KN + +E L+ FG FG
Sbjct: 161 MLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAV 248
>gi|172092|gb|AAA34838.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
Length = 577
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 73/148 (49%), Gaps = 14/148 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKA 165
++ LY+G++ ++E + ++F P G + + ++ + + ++ + KA
Sbjct: 36 SSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKA 95
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
+L+ +KGR +I ++ + +++ +KNL + N+ L F VFGDI +
Sbjct: 96 IEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSS 155
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ DE G SK G V F + AA +A+
Sbjct: 156 KIATDENGKSKGFGFVHFEEEGAAKEAI 183
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 67/166 (40%), Gaps = 33/166 (19%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKA 165
A+ LY+ NI + T+ ELF +G + K+ K FGF+ + +A KA
Sbjct: 216 AHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKA 275
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
L+ L G L + ++ +N + VKNL V
Sbjct: 276 VEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVN--LFVKNLDDSV 333
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+E LE F +G I A V+ E G SK G V F+ A +A+
Sbjct: 334 DDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAI 379
Score = 38.9 bits (89), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 23/151 (15%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
+++ N+ DI + + F +G+ I K K FGF+ + + A +A L+
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALN 187
Query: 171 GHVLKGRSLKIRFAP----------------INAAIKVKNLTSCVTNELLELAFGVFGDI 214
G +L G+ +I AP + VKN+ S T+E + F FG I
Sbjct: 188 GMLLNGQ--EIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPI 245
Query: 215 ERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
A + D G K G V + + A +A+
Sbjct: 246 VSASLEKDADGKLKGFGFVNYEKHEDAVKAV 276
>gi|6321013|ref|NP_011092.1| Pab1p [Saccharomyces cerevisiae S288c]
gi|417441|sp|P04147.4|PABP_YEAST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=ARS consensus-binding protein ACBP-67;
AltName: Full=Polyadenylate tail-binding protein
gi|171967|gb|AAA34787.1| poly (A)-binding protein [Saccharomyces cerevisiae]
gi|218386|dbj|BAA00017.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|603406|gb|AAB64692.1| Pab1p: polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|51013159|gb|AAT92873.1| YER165W [Saccharomyces cerevisiae]
gi|151944882|gb|EDN63141.1| poly(A) binding protein [Saccharomyces cerevisiae YJM789]
gi|207345803|gb|EDZ72507.1| YER165Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259146093|emb|CAY79353.1| Pab1p [Saccharomyces cerevisiae EC1118]
gi|285811799|tpg|DAA07827.1| TPA: Pab1p [Saccharomyces cerevisiae S288c]
gi|365765943|gb|EHN07446.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299869|gb|EIW10961.1| Pab1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 577
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 73/148 (49%), Gaps = 14/148 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKA 165
++ LY+G++ ++E + ++F P G + + ++ + + ++ + KA
Sbjct: 36 SSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKA 95
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
+L+ +KGR +I ++ + +++ +KNL + N+ L F VFGDI +
Sbjct: 96 IEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSS 155
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ DE G SK G V F + AA +A+
Sbjct: 156 KIATDENGKSKGFGFVHFEEEGAAKEAI 183
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 67/166 (40%), Gaps = 33/166 (19%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKA 165
A+ LY+ NI + T+ ELF +G + K+ K FGF+ + +A KA
Sbjct: 216 AHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKA 275
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
L+ L G L + ++ +N + VKNL V
Sbjct: 276 VEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVN--LFVKNLDDSV 333
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+E LE F +G I A V+ E G SK G V F+ A +A+
Sbjct: 334 DDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAI 379
Score = 38.9 bits (89), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 23/151 (15%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
+++ N+ DI + + F +G+ I K K FGF+ + + A +A L+
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALN 187
Query: 171 GHVLKGRSLKIRFAP----------------INAAIKVKNLTSCVTNELLELAFGVFGDI 214
G +L G+ +I AP + VKN+ S T+E + F FG I
Sbjct: 188 GMLLNGQ--EIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPI 245
Query: 215 ERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
A + D G K G V + + A +A+
Sbjct: 246 VSASLEKDADGKLKGFGFVNYEKHEDAVKAV 276
>gi|326511990|dbj|BAJ95976.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 530
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 125/285 (43%), Gaps = 36/285 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKA--KL 169
LY+G++ ++T++ + ELF G+ + + N + G+ ++Y + D A+A L
Sbjct: 124 LYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARAMEAL 183
Query: 170 DGHVLKGRSLKIRFA---PIN-----AAIKVKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ L + +++ ++ P + A I +KNL + N+ L F FG I V +
Sbjct: 184 NFAPLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVAM 243
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTI 281
D+ G SK G V++ ++ +A A++ G + +PV V P E D S++
Sbjct: 244 DDIGQSKGFGFVQYEKEESAQSAMKSL-NGMLI---NDKPVYVGPFLRKQERDNSSDKA- 298
Query: 282 NKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHEL-------------YEHETEMLR- 327
K F K + EYG+ + + +E + R
Sbjct: 299 -KFNNVFVKNLSESTTKEDLIKVFSEYGTITSAVVMIGMDGKSRCFGFVNFESPDDAARA 357
Query: 328 -KELAQREI-DRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQ 370
+EL ++I D+E + K + +LKRR E+ MK A++ Q
Sbjct: 358 VEELNGKKINDKEWYVGRAQKKSEREMDLKRRFEQSMKDAADKYQ 402
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 32/166 (19%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNAD 163
KF N +++ N+ T+ D+I++F YG + K + FGF+ + +A
Sbjct: 299 KFNN---VFVKNLSESTTKEDLIKVFSEYGTITSAVVMIGMDGKSRCFGFVNFESPDDAA 355
Query: 164 KAKAKLDGHVLK------GRS---------LKIRF--APINAAIK-------VKNLTSCV 199
+A +L+G + GR+ LK RF + +AA K +KNL +
Sbjct: 356 RAVEELNGKKINDKEWYVGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGI 415
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
T++ L F FG I ++ D+ G SK G V F+ + A+QAL
Sbjct: 416 TDDQLRELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTREEASQAL 461
>gi|148229527|ref|NP_001085857.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
laevis]
gi|49118872|gb|AAH73435.1| MGC80927 protein [Xenopus laevis]
Length = 626
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQDAADRAIEK 157
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 70/159 (44%), Gaps = 30/159 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + E F YG+T + + K K FGF+ + +A+KA ++
Sbjct: 193 VYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDPSGKSKGFGFVSFERHEDANKAVDDMN 252
Query: 171 GHVLKGR---------------SLKIRFAPIN---------AAIKVKNLTSCVTNELLEL 206
G + G+ LK RF + + +KNL + +E L
Sbjct: 253 GKDVNGKIMFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V+++E G SK G V F+ A +A+
Sbjct: 313 EFSPFGSITSAKVMLEE-GRSKGFGFVCFSSPEEATKAV 350
>gi|349577826|dbj|GAA22994.1| K7_Pab1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 577
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 73/148 (49%), Gaps = 14/148 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKA 165
++ LY+G++ ++E + ++F P G + + ++ + + ++ + KA
Sbjct: 36 SSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKA 95
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
+L+ +KGR +I ++ + +++ +KNL + N+ L F VFGDI +
Sbjct: 96 IEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSS 155
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ DE G SK G V F + AA +A+
Sbjct: 156 KIATDENGKSKGFGFVHFEEEGAAKEAI 183
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 70/164 (42%), Gaps = 29/164 (17%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE---KMFGFIRMDYKHNADKAKA 167
A+ LY+ NI + T+ ELF +G + K+ K+ GF ++Y+ + D KA
Sbjct: 216 AHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKA 275
Query: 168 -------KLDG---------------HVLKGRSLKIRFAPIN----AAIKVKNLTSCVTN 201
+L+G HVLK + R + + VKNL V +
Sbjct: 276 VEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDD 335
Query: 202 ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
E LE F +G I A V+ E G SK G V F+ A +A+
Sbjct: 336 EKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAI 379
Score = 38.9 bits (89), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 23/151 (15%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
+++ N+ DI + + F +G+ I K K FGF+ + + A +A L+
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALN 187
Query: 171 GHVLKGRSLKIRFAP----------------INAAIKVKNLTSCVTNELLELAFGVFGDI 214
G +L G+ +I AP + VKN+ S T+E + F FG I
Sbjct: 188 GMLLNGQ--EIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPI 245
Query: 215 ERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
A + D G K G V + + A +A+
Sbjct: 246 VSASLEKDADGKLKGFGFVNYEKHEDAVKAV 276
>gi|414588970|tpg|DAA39541.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 654
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 21/150 (14%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKHNADKAKAKLD 170
+++ N+ I + + F +G I + +GF++ + +A A KL+
Sbjct: 125 IFIKNLDKSIDNKALYDTFCAFGNILSCKIATDPSGESRGYGFVQFEKDESAQSAIDKLN 184
Query: 171 GHVLKGRSLKIRFAP---------INAAIK-----VKNLTSCVTNELLELAFGVFGDIER 216
G ++ + K+ P +++ IK VKNL+ VT++ L+ FG +G I
Sbjct: 185 GMLINDK--KVFVGPFVRKQDRENVSSNIKFSNVYVKNLSDTVTDDELKEMFGKYGTITS 242
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQALR 246
A+V+ D G S+C G V F AAAQA++
Sbjct: 243 AVVMRDSDGKSRCFGFVNFENADAAAQAVQ 272
>gi|392575524|gb|EIW68657.1| hypothetical protein TREMEDRAFT_71869 [Tremella mesenterica DSM
1558]
Length = 389
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 45/72 (62%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDG 171
+NC L++GN+G +T+ ++ LF+ YG ++ + ++ + F+++D A A A L
Sbjct: 248 DNCTLFVGNLGPYVTQAELTPLFQTYGYVTDIRMQADRGYAFVKLDTSQAAVSAMATLQN 307
Query: 172 HVLKGRSLKIRF 183
+++GR LKI++
Sbjct: 308 TMVQGRPLKIQW 319
Score = 42.0 bits (97), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 10/141 (7%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKEKMF-------GFIRMDYKHNADKAKA 167
LY+GN+ +T+ + E+F G I +++ F GF+ +A++A
Sbjct: 25 HLYVGNLSPRVTDYMLTEIFAVAGPVVNAKIIQDRNFQHAGFNYGFVEYIDMRSAEQAIQ 84
Query: 168 KLDGHVLKGRSLKIRFAPI--NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ER 224
L+G + +K + + V +L+ V +++L AFG FG + A V+ D
Sbjct: 85 TLNGRKIFDAEVKQNKEDTQHHHHVFVGDLSPEVNDDVLAKAFGAFGSMSEARVMWDMNS 144
Query: 225 GNSKCEGIVEFARKPAAAQAL 245
G S+ G + F ++ A QA+
Sbjct: 145 GKSRGYGFLSFRKREDAEQAI 165
>gi|327271804|ref|XP_003220677.1| PREDICTED: embryonic polyadenylate-binding protein-like [Anolis
carolinensis]
Length = 635
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 73/144 (50%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + ++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNLDDSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE G S+ G V F AA +A+
Sbjct: 133 DENG-SRGYGFVHFETHEAANRAI 155
Score = 42.4 bits (98), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 37/171 (21%)
Query: 106 KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQEL-----FINKEKMFGFIRMDYKH 160
K ++F N +Y+ N G +++ + E F +G+T + I + K FGF+ +
Sbjct: 186 KAMEFTN---VYIKNFGEEMSNERLQETFSIFGKTLSVKVMTDNIGRSKGFGFVNFEKHQ 242
Query: 161 NADKAKAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKN 194
+A KA ++G + GR L + R+ +N + VKN
Sbjct: 243 DAQKAVEDMNGKEINGRMLYVGRAQKRMERQSELKRKFEQIKQERVSRYQGVN--LYVKN 300
Query: 195 LTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
L + +E L F +G I A V+ E G+SK G V F+ A +A+
Sbjct: 301 LDDGIDDERLRKEFSPYGTITSAKVMT-EGGHSKGFGFVCFSSPEEATKAV 350
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N + +GF+ + A++A A ++G
Sbjct: 101 IFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENGSRGYGFVHFETHEAANRAIATMNG 160
Query: 172 HVLKGRSLKI--------RFAPINAA------IKVKNLTSCVTNELLELAFGVFGDIERA 217
+L R + + R A A + +KN ++NE L+ F +FG
Sbjct: 161 MLLNDRKVFVGNFKSRREREAEYGAKAMEFTNVYIKNFGEEMSNERLQETFSIFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V F + A +A+
Sbjct: 221 KVMTDNIGRSKGFGFVNFEKHQDAQKAV 248
>gi|256271306|gb|EEU06376.1| Pab1p [Saccharomyces cerevisiae JAY291]
Length = 577
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 73/148 (49%), Gaps = 14/148 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKA 165
++ LY+G++ ++E + ++F P G + + ++ + + ++ + KA
Sbjct: 36 SSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKA 95
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
+L+ +KGR +I ++ + +++ +KNL + N+ L F VFGDI +
Sbjct: 96 IEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSS 155
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ DE G SK G V F + AA +A+
Sbjct: 156 KIATDENGKSKGFGFVHFEEEGAAKEAI 183
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 67/166 (40%), Gaps = 33/166 (19%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKA 165
A+ LY+ NI + T+ ELF +G + K+ K FGF+ + +A KA
Sbjct: 216 AHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKA 275
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
L+ L G L + ++ +N + VKNL V
Sbjct: 276 VEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVN--LFVKNLDDSV 333
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+E LE F +G I A V+ E G SK G V F+ A +A+
Sbjct: 334 DDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAI 379
Score = 38.9 bits (89), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 23/151 (15%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
+++ N+ DI + + F +G+ I K K FGF+ + + A +A L+
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALN 187
Query: 171 GHVLKGRSLKIRFAP----------------INAAIKVKNLTSCVTNELLELAFGVFGDI 214
G +L G+ +I AP + VKN+ S T+E + F FG I
Sbjct: 188 GMLLNGQ--EIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPI 245
Query: 215 ERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
A + D G K G V + + A +A+
Sbjct: 246 VSASLEKDADGKLKGFGFVNYEKHEDAVKAV 276
>gi|348517413|ref|XP_003446228.1| PREDICTED: polyadenylate-binding protein 4 [Oreochromis niloticus]
Length = 627
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 73/146 (50%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKL 169
LY+G++ DITE + E F P G + + ++ + + ++ +A++A +
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQDAADRAIEK 157
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + E+F YG+T + + K + FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGDDMDDERLKEIFDKYGKTLSVKVMTDPSGKSRGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+++ + R+ +N + +KNL + +E L
Sbjct: 253 GTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V+++E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVMLEE-GRSKGFGFVCFSSPEEATKAV 350
>gi|302693014|ref|XP_003036186.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
gi|300109882|gb|EFJ01284.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
Length = 632
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 72/150 (48%), Gaps = 14/150 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KAK 166
+ LY+G + +TE + E+F G + + ++ + G+ ++Y + AD +A
Sbjct: 45 SASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 104
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
+L+ ++K R +I ++ + A++ +KNL + N+ L F FG++
Sbjct: 105 EQLNYSLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCK 164
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA A++
Sbjct: 165 VATDEHGNSKGYGFVHYETAEAAENAIKNV 194
Score = 45.1 bits (105), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 66/164 (40%), Gaps = 29/164 (17%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKHNADKA 165
A LY+ NI ++T+ + LF+ G I +++ FGF+ + A KA
Sbjct: 224 AQFTNLYIKNIDPEVTDEEFEALFREQGNVTSSVIQRDEEGRSRGFGFVNYETHEEAQKA 283
Query: 166 KAKLDGHVLKGRSLKIRFAPINAA------------------------IKVKNLTSCVTN 201
L+ GR L + A A + VKNL V +
Sbjct: 284 VDNLNDKDFHGRKLFVSRAQKKAEREEELRKAHEQARLEKLSKYQGLNLYVKNLDDDVDD 343
Query: 202 ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
E L F FG I A V+ D++G SK G V ++ A++A+
Sbjct: 344 EKLRAEFEPFGTITSAKVMRDDKGVSKGFGFVCYSSPEEASKAV 387
>gi|19114289|ref|NP_593377.1| mRNA export shuttling protein [Schizosaccharomyces pombe 972h-]
gi|3123239|sp|P31209.2|PABP_SCHPO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|2104439|emb|CAB08762.1| mRNA export shuttling protein [Schizosaccharomyces pombe]
Length = 653
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKA 165
+ LY+G + +TE + ELF G + + ++ + + ++ + +KA
Sbjct: 78 TSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKA 137
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
+L+ ++KGR +I ++ + +++ +KNL + N+ L F FG I
Sbjct: 138 LDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSC 197
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V VDE GN+K G V F +A A+
Sbjct: 198 KVAVDELGNAKGYGFVHFDSVESANAAIEHV 228
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 29/164 (17%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKA 165
AN +Y+ N+ +ITE + +LF +GE L + +K + FGF+ A KA
Sbjct: 258 ANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKA 317
Query: 166 KAKLDGHVLKGRSL--------------------KIRFAPIN----AAIKVKNLTSCVTN 201
+L+ KG+ L +++ +N + +KNL V +
Sbjct: 318 VDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDD 377
Query: 202 ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
E L+ F FG I A ++ DE+G SK G V + A +A+
Sbjct: 378 ERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAV 421
>gi|389586343|dbj|GAB69072.1| polyadenylate-binding protein, partial [Plasmodium cynomolgi strain
B]
Length = 883
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 74/149 (49%), Gaps = 14/149 (9%)
Query: 114 CRLYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA-- 167
LY+G++ D+TE + E+F G + + ++ K G+ ++Y + AD +A
Sbjct: 16 ASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALD 75
Query: 168 KLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIV 219
L+ +KG+ ++ ++ + +++ VKNL + N+ L F +FG+I V
Sbjct: 76 TLNYTNIKGQPARLMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFGNILSCKV 135
Query: 220 IVDERGNSKCEGIVEFARKPAAAQALRRC 248
DE G SK G V + + +A +A+ +
Sbjct: 136 ATDEFGKSKSYGFVHYEDEESAKEAIEKV 164
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 101 SEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI---NKEKMFGFIRMD 157
SE D KF N LY+ N +TE + ELF PYGE + + NK + F FI
Sbjct: 183 SERATNDTKFTN---LYVKNFPDSVTETHLKELFSPYGEITSMIVKTDNKNRKFCFINYA 239
Query: 158 YKHNADKAKAKLDG 171
+A A L+G
Sbjct: 240 DSESAKNAMENLNG 253
>gi|297841929|ref|XP_002888846.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
gi|297334687|gb|EFH65105.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
Length = 685
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 19/151 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQEL-----FINKEKMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + E F +G + + K +GF++ + + A A KL+
Sbjct: 147 VFIKNLDPSIDNKALYETFSAFGTILSCKVAMDAVGRSKGYGFVQFEKEETAQAAIDKLN 206
Query: 171 GHVLKGRSLKI-RFA-------------PINAAIKVKNLTSCVTNELLELAFGVFGDIER 216
G +L + + + F P + VKNL +T++ L+ FG +GDI
Sbjct: 207 GMLLNDKQVFVGHFVRRQDRSRSESGAVPRFTNVYVKNLPKEITDDELKKTFGKYGDISS 266
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQALRR 247
A+V+ D+ GNS+ G V F AAA A+ +
Sbjct: 267 AVVMKDQSGNSRSFGFVNFESPEAAAVAVEK 297
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 70/149 (46%), Gaps = 13/149 (8%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKE---KMFGFIRMDYKHNADKAKA-- 167
N LY+G++ + E +++LF Q + + ++ + G+ +++ + D ++A
Sbjct: 57 NSSLYVGDLDPSVDEPQLLDLFNQVAPVQTVRVCRDLTRRSLGYAYVNFANPEDASRAMD 116
Query: 168 KLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIV 219
L+ ++ R ++I + + + + +KNL + N+ L F FG I V
Sbjct: 117 SLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDPSIDNKALYETFSAFGTILSCKV 176
Query: 220 IVDERGNSKCEGIVEFARKPAAAQALRRC 248
+D G SK G V+F ++ A A+ +
Sbjct: 177 AMDAVGRSKGYGFVQFEKEETAQAAIDKL 205
>gi|401886540|gb|EJT50568.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
2479]
Length = 686
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 71/151 (47%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
N+ LY+G + +TE + E+F G + + ++ + G+ ++Y + AD +A
Sbjct: 55 NSASLYVGELDPSVTEAMLFEIFNMVGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERA 114
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
L+ ++K R +I ++ + A++ +KNL + N+ L F FG+I
Sbjct: 115 LEHLNYSLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDDKIDNKALHDTFAAFGNILSC 174
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNS+ V + AA A++
Sbjct: 175 KVATDENGNSRGFAFVHYETGEAADAAIKSV 205
Score = 42.0 bits (97), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 72/169 (42%), Gaps = 36/169 (21%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINK-----EKMFGFIRMDYKHNAD 163
KF N +++ N+ + T+ D+ ++FKP+GE ++ K F F+ A
Sbjct: 236 KFTN---IFIKNLEPEFTQKDLEDMFKPFGEIVSAALSVGEDGLSKGFAFVNYTTHDAAK 292
Query: 164 KAKAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTS 197
KA +L+ + G+ L + + A +N + VKN+
Sbjct: 293 KAVDELNDKEINGKKLYVGRAQKRAERDEELRRMHEERRLENESKTAGVN--LYVKNIDD 350
Query: 198 CVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALR 246
++ L F G I A V+ D++G S+ G V F++ A +A++
Sbjct: 351 EWDDDRLRSEFDFAGTITSAKVMRDDKGASRGFGFVCFSQPDEATRAVQ 399
>gi|194228035|ref|XP_001914759.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Equus
caballus]
Length = 200
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 76/144 (52%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ ++TE + E F+P G + I ++K+ G+ ++Y+ D +A L
Sbjct: 4 LYVGDLHPEVTEAMLYEKFRPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + +++ +KNL + N+ L F FG+I V
Sbjct: 64 NFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVAC 123
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE+G K G V F ++ +A +A+
Sbjct: 124 DEKG-PKGYGFVHFQKQESAERAI 146
>gi|242096254|ref|XP_002438617.1| hypothetical protein SORBIDRAFT_10g022900 [Sorghum bicolor]
gi|241916840|gb|EER89984.1| hypothetical protein SORBIDRAFT_10g022900 [Sorghum bicolor]
Length = 631
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 79/172 (45%), Gaps = 33/172 (19%)
Query: 104 QNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDY 158
+N+++KF N +Y+ N+ + +++D+ + F P+GE + ++ K FGF+ +
Sbjct: 204 RNREVKFTN---VYIKNLPTEFSDDDLRQEFAPFGEITSAVVMRDVNGVSKCFGFVNFEK 260
Query: 159 KHNADKAKAKLDGHVLKGRSL---------------KIRFA----------PINAAIKVK 193
A +A K +G V+ ++L K +F P + +K
Sbjct: 261 PEFALEAVKKANGKVINDKTLYVGRAQKKAERQAELKTKFKQEDRDKKVDKPNGINLYLK 320
Query: 194 NLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
N+ + +E L++ F FG + V+VD +G SK G V FA A A+
Sbjct: 321 NIDDSINDEGLKILFEEFGQVTSCKVMVDAQGRSKGSGFVLFATAEAGHSAI 372
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 71/149 (47%), Gaps = 20/149 (13%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLD 170
L++ N+ I ++ E+F +G + + K +GF++ + + +A A +L+
Sbjct: 127 LFVKNLEPSIDSKNLYEMFSSFGTILSCKVATDSAGQSKGYGFVQYETEESAQDAINRLN 186
Query: 171 GHVLKGRSL-----------KIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIV 219
G + R + +++F + +KNL + +++ L F FG+I A+V
Sbjct: 187 GMLANDREMFVGLHMRRRNREVKFT----NVYIKNLPTEFSDDDLRQEFAPFGEITSAVV 242
Query: 220 IVDERGNSKCEGIVEFARKPAAAQALRRC 248
+ D G SKC G V F + A +A+++
Sbjct: 243 MRDVNGVSKCFGFVNFEKPEFALEAVKKA 271
>gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes]
Length = 623
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 73/146 (50%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKL 169
LY+G++ DITE + E F P G + + ++ + + ++ +A++A +
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQDAADRAIEK 157
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + ELF YG+T + + K + FGF+ + +A+KA ++
Sbjct: 193 VYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDPTGKSRGFGFVSYEKHEDANKAVEDMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+++ + R+ +N + +KNL + +E L
Sbjct: 253 GTELNGKTVFVGRAQKKNERQAELKRKFEMLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V+++E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVMLEE-GRSKGFGFVCFSSPEEATKAV 350
>gi|118101731|ref|XP_417821.2| PREDICTED: polyadenylate-binding protein 4 [Gallus gallus]
Length = 630
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQDAADRAIEK 157
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 30/159 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + ELF YG+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMN 252
Query: 171 GHVLKGR---------------SLKIRFAPIN---------AAIKVKNLTSCVTNELLEL 206
G + G+ LK RF + + +KNL + +E L
Sbjct: 253 GKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 313 EFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
>gi|449268618|gb|EMC79472.1| Polyadenylate-binding protein 4 [Columba livia]
Length = 630
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQDAADRAIEK 157
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 30/159 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + ELF YG+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMN 252
Query: 171 GH------VLKGRS---------LKIRFAPIN---------AAIKVKNLTSCVTNELLEL 206
G V GR+ LK +F + + +KNL + +E L
Sbjct: 253 GKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERLSRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 313 EFSPFGAITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
>gi|432937502|ref|XP_004082431.1| PREDICTED: polyadenylate-binding protein 4-like [Oryzias latipes]
Length = 629
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 73/146 (50%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKL 169
LY+G++ DITE + E F P G + + ++ + + ++ +A++A +
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQDAADRAIEK 157
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 75/161 (46%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + E+F+ YG+T + + K + FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGDEMEDEQLKEMFEKYGKTLSVKVMTDSSGKSRGFGFVSFEKHEDANKAVEEIN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+++ + R+ +N + +KNL + +E L
Sbjct: 253 GTELNGKTVFVGRAQKKMERQAELKRKFELLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 350
>gi|406698471|gb|EKD01707.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
8904]
Length = 686
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 71/151 (47%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
N+ LY+G + +TE + E+F G + + ++ + G+ ++Y + AD +A
Sbjct: 55 NSASLYVGELDPSVTEAMLFEIFNMVGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERA 114
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
L+ ++K R +I ++ + A++ +KNL + N+ L F FG+I
Sbjct: 115 LEHLNYSLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDDKIDNKALHDTFAAFGNILSC 174
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNS+ V + AA A++
Sbjct: 175 KVATDENGNSRGFAFVHYETGEAADAAIKSV 205
Score = 41.6 bits (96), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 72/169 (42%), Gaps = 36/169 (21%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINK-----EKMFGFIRMDYKHNAD 163
KF N +++ N+ + T+ D+ ++FKP+GE ++ K F F+ A
Sbjct: 236 KFTN---IFIKNLEPEFTQKDLEDMFKPFGEIVSAALSVGEDGLSKGFAFVNYTTHDAAK 292
Query: 164 KAKAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTS 197
KA +L+ + G+ L + + A +N + VKN+
Sbjct: 293 KAVDELNDKEINGKKLYVGRAQKRAERDEELRRMHEERRLENESKTAGVN--LYVKNIDD 350
Query: 198 CVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALR 246
++ L F G I A V+ D++G S+ G V F++ A +A++
Sbjct: 351 EWDDDRLRSEFDFAGTITSAKVMRDDKGASRGFGFVCFSQPDEATRAVQ 399
>gi|13540314|gb|AAK29408.1|AF338225_1 embryonic poly(A) binding protein [Xenopus laevis]
Length = 629
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 71/145 (48%), Gaps = 15/145 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKL 169
LY+G++ D+TE + E F P G + + ++ + +I +A++A +
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + ++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALR 246
DE G S+ G V F AA +A++
Sbjct: 133 DEHG-SRGYGFVHFETHEAANRAIQ 156
Score = 38.9 bits (89), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 33/169 (19%)
Query: 106 KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKH 160
K ++F N +Y+ N G D+ + + E+F +G T + + + + FGF+
Sbjct: 186 KVMEFTN---VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHE 242
Query: 161 NADKAKAKLDGHVLKGR---------------SLKIRFAPIN---------AAIKVKNLT 196
A KA ++++G + GR LK +F I + VKNL
Sbjct: 243 EAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLD 302
Query: 197 SCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ ++ L F +G I A V+ E G+SK G V F+ A +A+
Sbjct: 303 DGIDDDRLRKEFLPYGTITSAKVMT-EGGHSKGFGFVCFSSPEEATKAV 350
>gi|268581545|ref|XP_002645756.1| C. briggsae CBR-PAB-2 protein [Caenorhabditis briggsae]
Length = 685
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 80/167 (47%), Gaps = 20/167 (11%)
Query: 99 PPSE---PQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----F 151
PP+ P N A+ LY+G++ GD+TE+ + E F G + + ++
Sbjct: 37 PPANMGYPPNATYSMAS---LYIGDLHGDVTESMLFEKFSMAGPVLSIRVCRDNTSRLSL 93
Query: 152 GFIRMDYKHNADKAKA--KLDGHVLKGRSLKIRFAPINAA--------IKVKNLTSCVTN 201
G+ ++++ AD +A ++ + GR ++I ++ + A I +KNL + N
Sbjct: 94 GYAYVNFQQPADAERALDTMNFETIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDN 153
Query: 202 ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
+ + F +FG+I V DE G+S+ G V F + +A A+ +
Sbjct: 154 KSIYDTFSLFGNILSCKVAADEDGSSRGYGFVHFETEESAQIAIEKV 200
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 19/154 (12%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKA 165
A N +++ N+ I I + F +G + + + +GF+ + + +A A
Sbjct: 137 AGNGNIFIKNLDRVIDNKSIYDTFSLFGNILSCKVAADEDGSSRGYGFVHFETEESAQIA 196
Query: 166 KAKLDGHVLKGRSLKI-RFAPINAAIK-------------VKNLTSCVTNELLELAFGVF 211
K++G +L G+ + + +F +K VKN + E L F +
Sbjct: 197 IEKVNGMLLSGKKVYVGKFQTRAQRLKELGESGLKYTNVFVKNFGEHLDQEKLTKMFSKY 256
Query: 212 GDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
G+I A+V+ D G K G V +A AA +A+
Sbjct: 257 GEITSAVVMTDADGKPKGFGFVAYADPDAAQKAV 290
>gi|33942106|ref|NP_898845.1| ribonucleoprotein PTB-binding 2 [Mus musculus]
gi|85702750|sp|Q7TPD6.1|RAVR2_MOUSE RecName: Full=Ribonucleoprotein PTB-binding 2; AltName:
Full=Protein raver-2
gi|33243983|gb|AAH55329.1| Ribonucleoprotein, PTB-binding 2 [Mus musculus]
Length = 673
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 68/137 (49%), Gaps = 2/137 (1%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168
+ +N ++ + N+ D + ++ EL + Y E + ++++ K F+ + A A +
Sbjct: 53 ELSNRRKILVKNLPQDSSSQEVHELLQDY-ELKYCYVDRNKRTAFVTLLNGEQAQSAIQR 111
Query: 169 LDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGNS 227
+GR L ++ P +A + + NL T E E +G+IER ++ E G+S
Sbjct: 112 FHQFSFRGRELTVQLQPTDALLCITNLPISFTLEEFEELVRAYGNIERCFLVYSEVTGHS 171
Query: 228 KCEGIVEFARKPAAAQA 244
K G VE+ +K AA+A
Sbjct: 172 KGYGFVEYMKKDFAAKA 188
>gi|37681851|gb|AAQ97803.1| poly(A)-binding protein, cytoplasmic 1 [Danio rerio]
Length = 620
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 75/145 (51%), Gaps = 17/145 (11%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKAKLDG 171
LY+G++ D+TE + + F P G+ + + ++ + G+ ++++ AD A+ LD
Sbjct: 13 LYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPAD-AECALDT 71
Query: 172 ---HVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVI 220
V+KGR ++I ++ + ++ +KN+ + N+ L F FG+I V+
Sbjct: 72 MNYEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVV 131
Query: 221 VDERGNSKCEGIVEFARKPAAAQAL 245
DE G SK G V F + AA +A+
Sbjct: 132 CDENG-SKGYGFVHFETQEAANRAI 155
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 37/171 (21%)
Query: 106 KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKH 160
K ++F N +Y+ N G DI + +F +G+T + + ++ FGF+
Sbjct: 186 KAVEFTN---VYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHG 242
Query: 161 NADKAKAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKN 194
+A +A +++G L GR L + R+ +N + VKN
Sbjct: 243 DARRAVTEMNGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVN--LYVKN 300
Query: 195 LTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
L + +E L F +G I A V+ D G+S+ G V F+ A +A+
Sbjct: 301 LDDSIDDEKLRKEFAPYGTITSAKVMTDG-GHSRGFGFVCFSSPEEATKAV 350
Score = 38.5 bits (88), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 18/139 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + + A++A ++G
Sbjct: 101 IFIKNMDESIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAANRAIETMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAA------IKVKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A + +KN + +E L+ F FG
Sbjct: 161 MLLNDRKVFVGHFKSRKEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFA 236
V+ DERG S+ G V F
Sbjct: 221 CVMTDERGRSRGFGFVNFV 239
>gi|413954516|gb|AFW87165.1| hypothetical protein ZEAMMB73_979278 [Zea mays]
gi|414865260|tpg|DAA43817.1| TPA: hypothetical protein ZEAMMB73_808082 [Zea mays]
Length = 643
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 32/173 (18%)
Query: 104 QNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDY 158
+++++KF N +Y+ N+ + +E+D+ + F P+GE + ++ K FGF+
Sbjct: 202 RDREVKFTN---VYIKNLPTEFSEDDLRQEFAPFGEITSAVVMRDADGASKCFGFVNFKK 258
Query: 159 KHNADKAKAKLDGHVLKGRSL---------------KIRFA---------PINAAIKVKN 194
A +A K +G + ++L K RF P + +KN
Sbjct: 259 PEFAIEAVEKANGKAIGDKTLYVGRAQKKEERKAELKTRFGRGRDNKVDKPNGINLYLKN 318
Query: 195 LTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRR 247
+ + +E L+ F FG + V+VD RG SK G V FA A +A+ R
Sbjct: 319 IDDGINDEGLKKLFEEFGQVASCKVMVDARGRSKGSGFVSFATAEAGQRAINR 371
>gi|145349140|ref|XP_001418998.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579228|gb|ABO97291.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 572
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 73/149 (48%), Gaps = 14/149 (9%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAK 166
A LY+G++ +TE + E F G + + ++ + G+ ++++ D A
Sbjct: 34 AGTSSLYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLITRRSLGYAYVNFQSPNDAAH 93
Query: 167 A--KLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIER 216
A L+ V+ G+ +++ ++ + A++ +KNL + N+ L F FG I
Sbjct: 94 AIDVLNFQVINGKPIRVLYSQRDPAVRRSGVGNIFIKNLDKAIDNKALLDTFAQFGTITS 153
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQAL 245
A V +D +GNSK G V+F + AA A+
Sbjct: 154 AKVAMDGQGNSKGYGFVQFETQEAAQAAI 182
>gi|41054151|ref|NP_956133.1| polyadenylate-binding protein 1-like [Danio rerio]
gi|27881953|gb|AAH44513.1| Zgc:55855 [Danio rerio]
gi|182890236|gb|AAI65470.1| Zgc:55855 protein [Danio rerio]
Length = 620
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 75/145 (51%), Gaps = 17/145 (11%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKAKLDG 171
LY+G++ D+TE + + F P G+ + + ++ + G+ ++++ AD A+ LD
Sbjct: 13 LYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPAD-AECALDT 71
Query: 172 ---HVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVI 220
V+KGR ++I ++ + ++ +KN+ + N+ L F FG+I V+
Sbjct: 72 MNYEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVV 131
Query: 221 VDERGNSKCEGIVEFARKPAAAQAL 245
DE G SK G V F + AA +A+
Sbjct: 132 CDENG-SKGYGFVHFETQEAANRAI 155
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 37/171 (21%)
Query: 106 KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKH 160
K ++F N +Y+ N G DI + +F +G+T + + ++ FGF+
Sbjct: 186 KAVEFTN---VYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHG 242
Query: 161 NADKAKAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKN 194
+A +A +++G L GR L + R+ +N + VKN
Sbjct: 243 DARRAVTEMNGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVN--LYVKN 300
Query: 195 LTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
L + +E L F +G I A V+ D G+S+ G V F+ A +A+
Sbjct: 301 LDDSIDDEKLRKEFAPYGTITSAKVMTDG-GHSRGFGFVCFSSPEEATKAV 350
Score = 38.5 bits (88), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 18/139 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + + A++A ++G
Sbjct: 101 IFIKNMDESIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAANRAIETMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAA------IKVKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A + +KN + +E L+ F FG
Sbjct: 161 MLLNDRKVFVGHFKSRKEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFA 236
V+ DERG S+ G V F
Sbjct: 221 CVMTDERGRSRGFGFVNFV 239
>gi|71659594|ref|XP_821518.1| polyadenylate-binding protein 1 [Trypanosoma cruzi strain CL
Brener]
gi|70886900|gb|EAN99667.1| polyadenylate-binding protein 1, putative [Trypanosoma cruzi]
Length = 570
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 87/177 (49%), Gaps = 22/177 (12%)
Query: 88 IMAIQGPTL----DLPPSEP-QNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQE 142
++A+ P ++ P+ P K ++ A+ LY+G++ +TE ++ELFKP+G
Sbjct: 1 MLAVNKPMAATQEEITPTVPVTTKALQVAS---LYVGDLDPVVTEPHLVELFKPFGTILN 57
Query: 143 LFINKEKM------FGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA---PI-----NA 188
+ + ++ + +G++ + +A KA L+ + + ++I + P N
Sbjct: 58 VRVCRDIITQRSLGYGYVNFNSHDSAAKAMEALNFKRVGDKCMRIMWQQRDPTLRYSGNG 117
Query: 189 AIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
I VKNL + V + L + F FGDI V+ DE G S+ G V F AA +A+
Sbjct: 118 NIFVKNLKNEVDSRELSVIFKKFGDILSCKVMEDEEGKSRGYGFVHFKNDNAAKEAI 174
>gi|449281934|gb|EMC88877.1| Embryonic polyadenylate-binding protein [Columba livia]
Length = 646
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 72/144 (50%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ D +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPVDAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + ++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE G S+ G V F AA +A+
Sbjct: 133 DENG-SRGYGFVHFETHEAATRAI 155
>gi|384486188|gb|EIE78368.1| hypothetical protein RO3G_03072 [Rhizopus delemar RA 99-880]
Length = 499
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 78/169 (46%), Gaps = 21/169 (12%)
Query: 92 QGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM- 150
QG + P S P + LY+G + +TE + E+F G + + ++ +
Sbjct: 13 QGSSTSAPESAP-------LASASLYVGELDPSVTEAMLFEMFNIIGPVSSIRVCRDAVT 65
Query: 151 -----FGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTS 197
+ ++ +A++A L+ ++KGRS +I ++ + +++ +KNL
Sbjct: 66 RRSLGYAYVNFHRMADAERALETLNYSMIKGRSCRIMWSQRDPSLRKGNNGNIFIKNLDP 125
Query: 198 CVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALR 246
+ ++ L F FG+I + DE+GNSK G V + AA A++
Sbjct: 126 SIDHKALHDTFSAFGNILSCKIAHDEQGNSKGYGFVHYETLEAAESAIK 174
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 64/157 (40%), Gaps = 27/157 (17%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAK 166
NN +++ N+ I + + F +G I + K +GF+ + A+ A
Sbjct: 114 NNGNIFIKNLDPSIDHKALHDTFSAFGNILSCKIAHDEQGNSKGYGFVHYETLEAAESAI 173
Query: 167 AKLDGHVLKGRSL------------------KIRFAPINAAIKVKNLTSCVTNELLELAF 208
++G +L R + +++F I VKN+ VT+E L F
Sbjct: 174 KSVNGMLLNDRKVFVGHHISRKERESKLGESRVQFT----NIYVKNIPFDVTDEELSQLF 229
Query: 209 GVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
G +G I ++ D+ G SK G V F + A A+
Sbjct: 230 GKYGTITSCVITRDDDGTSKGFGFVNFEKHQDAQNAV 266
>gi|403169799|ref|XP_003329214.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168425|gb|EFP84795.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 804
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 72/148 (48%), Gaps = 14/148 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA- 167
N LY+G + +TE + E+F G + + ++ + G+ ++Y + AD +A
Sbjct: 172 NTSLYVGELDPTVTEAMLYEIFSMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADAERAL 231
Query: 168 -KLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
+L+ ++K ++ +I ++ + +++ +KNL + N+ L F FGDI
Sbjct: 232 EQLNYSLIKNKACRIMWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFGDILSCK 291
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALR 246
V DE G SK G V + +A A++
Sbjct: 292 VATDEHGASKGYGFVHYVTGESAEAAIK 319
>gi|300798083|ref|NP_001178796.1| ribonucleoprotein PTB-binding 2 [Rattus norvegicus]
Length = 673
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 68/137 (49%), Gaps = 2/137 (1%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168
+ +N ++ + N+ D + ++ EL + Y E + ++++ K F+ + A A +
Sbjct: 53 ELSNRRKILVKNLPQDSSSQEVHELLQDY-ELKYCYVDRNKRTAFVTLLNGEQAQSAIQR 111
Query: 169 LDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGNS 227
+GR L ++ P +A + + NL T E E +G+IER ++ E G+S
Sbjct: 112 FHQFSFRGRELTVQLQPTDALLCITNLPVSFTLEEFEELVRAYGNIERCFLVYSEVTGHS 171
Query: 228 KCEGIVEFARKPAAAQA 244
K G VE+ +K AA+A
Sbjct: 172 KGYGFVEYMKKDFAAKA 188
>gi|148227542|ref|NP_001082094.1| embryonic polyadenylate-binding protein A [Xenopus laevis]
gi|94711253|sp|Q98SP8.2|EPABA_XENLA RecName: Full=Embryonic polyadenylate-binding protein A;
Short=Embryonic poly(A)-binding protein A; Short=ePAB-A;
Short=ePABP-A; AltName: Full=XePABP-A
gi|51258324|gb|AAH80020.1| EPAB protein [Xenopus laevis]
Length = 629
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 71/145 (48%), Gaps = 15/145 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKL 169
LY+G++ D+TE + E F P G + + ++ + +I +A++A +
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + ++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALR 246
DE G S+ G V F AA +A++
Sbjct: 133 DEHG-SRGYGFVHFETHEAANRAIQ 156
Score = 38.9 bits (89), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 33/169 (19%)
Query: 106 KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKH 160
K ++F N +Y+ N G D+ + + E+F +G T + + + + FGF+
Sbjct: 186 KVMEFTN---VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHE 242
Query: 161 NADKAKAKLDGHVLKGR---------------SLKIRFAPIN---------AAIKVKNLT 196
A KA ++++G + GR LK +F I + VKNL
Sbjct: 243 EAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLD 302
Query: 197 SCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ ++ L F +G I A V+ E G+SK G V F+ A +A+
Sbjct: 303 DGIDDDRLRKEFLPYGTITSAKVMT-EGGHSKGFGFVCFSSPEEATKAV 350
>gi|449486336|ref|XP_004177123.1| PREDICTED: embryonic polyadenylate-binding protein A-like
[Taeniopygia guttata]
Length = 167
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 73/144 (50%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 12 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 71
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + ++ +KNL + N+ L F FG+I V+
Sbjct: 72 NFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVC 131
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE G S+ G V F AA +A+
Sbjct: 132 DENG-SRGYGFVHFETHEAATRAI 154
>gi|389610655|dbj|BAM18939.1| polyA-binding protein [Papilio polytes]
Length = 611
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 74/147 (50%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKAK--L 169
LY+G++ DITE + E F G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALEGM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++KGR ++I ++ + +++ +KNL + N+ + F FG+I V
Sbjct: 73 NFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQ 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE G SK G V F + AA +++ +
Sbjct: 133 DETGASKGYGFVHFETEEAANKSIEKV 159
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 22/154 (14%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + + F +G + ++ K +GF+ + + A+K+ K++
Sbjct: 101 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 160
Query: 171 GHVLKGRSLKI-RFAP-------------INAAIKVKNLTSCVTNELLELAFGVFGDIER 216
G +L G+ + + RF P + + VKN ++E+L F +G I
Sbjct: 161 GMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLREMFEKYGRITS 220
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQALRRCAE 250
V+ E G+S+ G V F P AA+ R C E
Sbjct: 221 HKVMYKEDGSSRGFGFVAF-EDPDAAE--RACME 251
Score = 42.0 bits (97), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 35/162 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGE-TQELFINKE----KMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D ++ + E+F+ YG T + KE + FGF+ + A++A +L+
Sbjct: 194 VYVKNFGEDFSDEMLREMFEKYGRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACMELN 253
Query: 171 G-HVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNEL 203
G +++G+ L + R+ +N + VKNL + +E
Sbjct: 254 GKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN--LYVKNLDDTIDDER 311
Query: 204 LELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
L F FG I A V++++ G SK G V F+ A +A+
Sbjct: 312 LRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 352
>gi|344277245|ref|XP_003410413.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Loxodonta africana]
Length = 602
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 76/144 (52%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE+ + + F G + I ++ + G+ +++ H AD KA +
Sbjct: 205 LYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLHVADAQKALDTM 264
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+S+++ ++ +A ++ +KNL + N+ L F FG I + V+
Sbjct: 265 NFDVIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSTFGKILSSKVMS 324
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
D++G SK V F + AA +A+
Sbjct: 325 DDQG-SKGYAFVHFQNQSAADRAI 347
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 33/174 (18%)
Query: 101 SEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIR 155
SE +NK +F N +Y+ N G D+ + + E+F YG T + + K K FGF+
Sbjct: 373 SELKNKASEFTN---VYIKNFGDDMDDMRLKEVFSKYGTTLSVKVMTDSSGKSKGFGFVS 429
Query: 156 MDYKHNADKAKAKLDGH------VLKGRS---------LKIRFAPIN---------AAIK 191
A A +++G + GR+ LK F + +
Sbjct: 430 FASHEAAKNAVEEMNGKDINGQLIFVGRAQKKIERQAELKQMFEQLRQERFRRCRGVKLY 489
Query: 192 VKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+KNL + +E L F FG I R + ++ E G SK G++ F+ A +A+
Sbjct: 490 IKNLDDTIDDEKLRKEFASFGSISR-VKVMQEEGRSKGFGLICFSSHEEAIKAM 542
>gi|323355343|gb|EGA87168.1| Pab1p [Saccharomyces cerevisiae VL3]
Length = 563
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 73/148 (49%), Gaps = 14/148 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKA 165
++ LY+G++ ++E + ++F P G + + ++ + + ++ + KA
Sbjct: 36 SSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKA 95
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
+L+ +KGR +I ++ + +++ +KNL + N+ L F VFGDI +
Sbjct: 96 IEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSS 155
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ DE G SK G V F + AA +A+
Sbjct: 156 KIATDENGKSKGFGFVHFEEEGAAKEAI 183
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 67/166 (40%), Gaps = 33/166 (19%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKA 165
A+ LY+ NI + T+ ELF +G + K+ K FGF+ + +A KA
Sbjct: 216 AHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKA 275
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
L+ L G L + ++ +N + VKNL V
Sbjct: 276 VEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVN--LFVKNLDDSV 333
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+E LE F +G I A V+ E G SK G V F+ A +A+
Sbjct: 334 DDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAI 379
Score = 38.5 bits (88), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 23/151 (15%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
+++ N+ DI + + F +G+ I K K FGF+ + + A +A L+
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALN 187
Query: 171 GHVLKGRSLKIRFAP----------------INAAIKVKNLTSCVTNELLELAFGVFGDI 214
G +L G+ +I AP + VKN+ S T+E + F FG I
Sbjct: 188 GMLLNGQ--EIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPI 245
Query: 215 ERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
A + D G K G V + + A +A+
Sbjct: 246 VSASLEKDADGKLKGFGFVNYEKHEDAVKAV 276
>gi|449547299|gb|EMD38267.1| hypothetical protein CERSUDRAFT_113433 [Ceriporiopsis subvermispora
B]
Length = 679
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 72/145 (49%), Gaps = 14/145 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KAKAKL 169
LY+G + +TE + E+F G + + ++ + G+ ++Y + AD +A +L
Sbjct: 50 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 109
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++KGR+ +I ++ + A++ +KNL + N+ L F FG++ V
Sbjct: 110 NYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEGIDNKALHDTFAAFGNVLSCKVAT 169
Query: 222 DERGNSKCEGIVEFARKPAAAQALR 246
DE G SK G V + AA A++
Sbjct: 170 DEHGRSKGYGFVHYETAEAADTAIK 194
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 67/164 (40%), Gaps = 29/164 (17%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKA 165
A +Y+ NI ++T+ + +LF+ +G I ++ K FGF+ + A K
Sbjct: 226 AQFTNVYVKNIDAEVTDEEFRQLFEQFGNVTSAVIQRDEEGRSKGFGFVNFEKHEEAQKG 285
Query: 166 KAKLDGHVLKGRSLKIRFAPINAA------------------------IKVKNLTSCVTN 201
L L G+ L + A A + +KNL V +
Sbjct: 286 VESLHDFELNGKKLFVTRAQKKAEREEELRKSYEQAKNEKLSKYQGVNLYIKNLEDEVDD 345
Query: 202 ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
E L F FG I A V+ DE+G+SK G V F+ A +A+
Sbjct: 346 ERLRQEFEPFGTITSAKVMRDEKGSSKGFGFVCFSSPDEATKAV 389
Score = 38.9 bits (89), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 60/141 (42%), Gaps = 19/141 (13%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + + F +G + + K +GF+ + AD A ++
Sbjct: 138 IFIKNLDEGIDNKALHDTFAAFGNVLSCKVATDEHGRSKGYGFVHYETAEAADTAIKAVN 197
Query: 171 GHVLKGRSLKI--------RFAPIN------AAIKVKNLTSCVTNELLELAFGVFGDIER 216
G +L + + + R + I + VKN+ + VT+E F FG++
Sbjct: 198 GMLLNDKKVYVGPHISRKERQSKIEEMKAQFTNVYVKNIDAEVTDEEFRQLFEQFGNVTS 257
Query: 217 AIVIVDERGNSKCEGIVEFAR 237
A++ DE G SK G V F +
Sbjct: 258 AVIQRDEEGRSKGFGFVNFEK 278
>gi|431922543|gb|ELK19486.1| Polyadenylate-binding protein 4 [Pteropus alecto]
Length = 720
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 45.8 bits (107), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+ + + R+ +N + +KNL + +E L
Sbjct: 253 GKEINGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAV 350
>gi|148298695|ref|NP_001091823.1| poly A binding protein [Bombyx mori]
gi|111608107|gb|ABH10797.1| poly A binding protein [Bombyx mori]
Length = 603
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 72/147 (48%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKL 169
LY+G++ DITE + E F G + + ++ + + ++ +A++A +
Sbjct: 4 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 63
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++KGR ++I ++ + +++ +KNL + N+ L F FG+I V
Sbjct: 64 NFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALFDTFSAFGNILSCKVAQ 123
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE G SK G V F + AA +++ +
Sbjct: 124 DETGASKGYGFVHFETEEAANKSIEKV 150
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 70/154 (45%), Gaps = 22/154 (14%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + + F +G + ++ K +GF+ + + A+K+ K++
Sbjct: 92 VFIKNLDKSIDNKALFDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 151
Query: 171 GHVLKGRSLKI-RFAP-------------INAAIKVKNLTSCVTNELLELAFGVFGDIER 216
G +L G+ + + RF P + + VKN ++E+L+ F +G I
Sbjct: 152 GMLLNGKMVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITS 211
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQALRRCAE 250
V+ + GNS+ G V F P AA+ R C E
Sbjct: 212 HKVMYKDDGNSRGFGFVAF-EDPDAAE--RACIE 242
Score = 38.9 bits (89), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 72/160 (45%), Gaps = 31/160 (19%)
Query: 116 LYLGNIGGDITENDIIELFKPYGE-TQELFINKE----KMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D ++ + ++F+ YG T + K+ + FGF+ + A++A +L+
Sbjct: 185 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 244
Query: 171 GHVL----------------KGRSLKIRFAPINAA---------IKVKNLTSCVTNELLE 205
G L + + LK +F + + + VKNL + +E L
Sbjct: 245 GKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLR 304
Query: 206 LAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ G SK G V F+ A +A+
Sbjct: 305 KEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 343
>gi|402882426|ref|XP_003904744.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 614
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 73/144 (50%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ +LKG+ ++I ++ + ++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE G S+ G V F AA QA+
Sbjct: 133 DEHG-SRGFGFVHFETHEAAQQAI 155
Score = 42.0 bits (97), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 33/169 (19%)
Query: 106 KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKH 160
+ ++F N +Y+ N+ D+ E + +LF +G+ + + ++ + FGF+ +
Sbjct: 186 RALEFTN---IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHE 242
Query: 161 NADKAKAKLDGHVLKGR---------------SLKIRFAPIN---------AAIKVKNLT 196
A KA ++G + GR LK RF + + VKNL
Sbjct: 243 EAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLD 302
Query: 197 SCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ ++ L F +G I A V+ E G+SK G V F+ A +A+
Sbjct: 303 DSIDDDKLRKEFSPYGVITSAKVMT-EGGHSKGFGFVCFSSPEEATKAV 350
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + ++ FGF+ + A +A ++G
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSRGFGFVHFETHEAAQQAINTMNG 160
Query: 172 HVLKGRSLKI--------RFAPINA------AIKVKNLTSCVTNELLELAFGVFGDIERA 217
+L R + + R A + A I VKNL V + L+ F FG +
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G+S+C G V F + A +A+
Sbjct: 221 KVMRDNSGHSRCFGFVNFEKHEEAQKAV 248
>gi|363736681|ref|XP_422525.3| PREDICTED: ribonucleoprotein PTB-binding 2 [Gallus gallus]
Length = 620
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 129 DIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINA 188
+I +LFK Y E + ++++ K F+ + A A K + L+G+ + ++ P +A
Sbjct: 12 EIHDLFKDY-EIKYCYVDRNKRTAFVTLLNGEQAQNAIQKFHQYSLRGKEISVQLQPTDA 70
Query: 189 AIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQA 244
+ + NL T E E +G++ER ++ +E G+SK G VE+ +K +AA+A
Sbjct: 71 LLCITNLPISFTLEEFEELVRAYGNVERCFLVYNEVTGHSKGYGFVEYMKKDSAAKA 127
>gi|410898224|ref|XP_003962598.1| PREDICTED: polyadenylate-binding protein 4-like [Takifugu rubripes]
Length = 653
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 73/146 (50%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKL 169
LY+G++ DITE + E F P G + + ++ + + ++ +A++A +
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQDAADRAIEK 157
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + ELF YG+T + + K + FGF+ + +A+KA ++
Sbjct: 193 VYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDPTGKSRGFGFVSYEKHEDANKAVEDMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+++ + R+ +N + +KNL + +E L
Sbjct: 253 GTELNGKTVFVGRAQKKNERQAELKRKFEMLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V+++E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVMLEE-GRSKGFGFVCFSSPEEATKAV 350
>gi|149608633|ref|XP_001515603.1| PREDICTED: polyadenylate-binding protein 4 [Ornithorhynchus
anatinus]
Length = 630
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQDAADRAIEK 157
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 30/159 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + ELF YG+T + + K K FGF+ + +A++A ++
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANQAVEDMN 252
Query: 171 GH------VLKGRS---------LKIRFAPIN---------AAIKVKNLTSCVTNELLEL 206
G V GR+ LK +F + + +KNL + +E L
Sbjct: 253 GKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V+++E G SK G V F+ A +A+
Sbjct: 313 EFSPFGSITSAKVMLEE-GRSKGFGFVCFSSPEEATKAV 350
>gi|401625965|gb|EJS43937.1| pab1p [Saccharomyces arboricola H-6]
Length = 577
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 73/148 (49%), Gaps = 14/148 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKA 165
++ LY+G++ ++E + ++F P G + + ++ + + ++ + KA
Sbjct: 36 SSASLYVGDLEPTVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKA 95
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
+L+ +KGR +I ++ + +++ +KNL + N+ L F VFGDI +
Sbjct: 96 IDQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSS 155
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ DE G SK G V F + AA +A+
Sbjct: 156 KIATDENGKSKGFGFVHFEEEGAAKEAI 183
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 29/164 (17%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE---KMFGFIRMDYKHNADKAKA 167
A+ LY+ NI + T+ E+F +G + K+ K+ GF ++Y+++ D KA
Sbjct: 216 AHYTNLYVKNINSETTDEKFQEMFAQFGPIVSASLEKDADGKLKGFGFVNYENHEDAVKA 275
Query: 168 -------KLDG---------------HVLKGRSLKIRFAPIN----AAIKVKNLTSCVTN 201
L+G HVLK + R + + VKNL V +
Sbjct: 276 VEALNESDLNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDD 335
Query: 202 ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
E LE F +G I A V+ E G SK G V F+ A +A+
Sbjct: 336 EKLEEEFAPYGTITSAKVMRSENGKSKGFGFVCFSTPEEATKAI 379
Score = 38.5 bits (88), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 63/157 (40%), Gaps = 23/157 (14%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
+++ N+ DI + + F +G+ I K K FGF+ + + A +A L+
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALN 187
Query: 171 GHVLKGRSLKIRFAPI----------------NAAIKVKNLTSCVTNELLELAFGVFGDI 214
G +L G+ +I AP + VKN+ S T+E + F FG I
Sbjct: 188 GMLLNGQ--EIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEKFQEMFAQFGPI 245
Query: 215 ERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEG 251
A + D G K G V + A +A+ E
Sbjct: 246 VSASLEKDADGKLKGFGFVNYENHEDAVKAVEALNES 282
>gi|351699464|gb|EHB02383.1| Polyadenylate-binding protein 1-like 2 [Heterocephalus glaber]
Length = 200
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 75/144 (52%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ ++TE + E F P G + I ++K+ G+ ++Y+ D +A L
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + +++ +KNL + N+ L F FG+I V
Sbjct: 64 NFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSTFGNILSCKVAC 123
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE+G K G V F ++ +A +A+
Sbjct: 124 DEKG-PKGYGFVHFQKQESAERAI 146
>gi|302565150|ref|NP_001181379.1| polyadenylate-binding protein 1-like [Macaca mulatta]
Length = 614
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 73/144 (50%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ +LKG+ ++I ++ + ++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE G S+ G V F AA QA+
Sbjct: 133 DEHG-SRGFGFVHFETHEAAQQAI 155
Score = 41.6 bits (96), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 33/169 (19%)
Query: 106 KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKH 160
+ ++F N +Y+ N+ D+ E + +LF +G+ + + ++ + FGF+ +
Sbjct: 186 RALEFTN---IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHE 242
Query: 161 NADKAKAKLDGHVLKGR---------------SLKIRFAPIN---------AAIKVKNLT 196
A KA ++G + GR LK RF + + VKNL
Sbjct: 243 EAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLD 302
Query: 197 SCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ ++ L F +G I A V+ E G+SK G V F+ A +A+
Sbjct: 303 DSIDDDKLRKEFSPYGVITSAKVMT-EGGHSKGFGFVCFSSPEEATKAV 350
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + ++ FGF+ + A +A ++G
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSRGFGFVHFETHEAAQQAINTMNG 160
Query: 172 HVLKGRSLKI--------RFAPINA------AIKVKNLTSCVTNELLELAFGVFGDIERA 217
+L R + + R A + A I VKNL V + L+ F FG +
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G+S+C G V F + A +A+
Sbjct: 221 KVMRDNSGHSRCFGFVNFEKHEEAQKAV 248
>gi|213409529|ref|XP_002175535.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212003582|gb|EEB09242.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 621
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 14/152 (9%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADK 164
+ + LY+G + +TE + ELF G + + ++ + + ++ + +K
Sbjct: 66 STSASLYIGELDPMVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEK 125
Query: 165 AKAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIER 216
A +L+ ++KGR +I ++ + +++ +KNL + N+ L F FG I
Sbjct: 126 ALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILS 185
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V VDE GNSK G V F +A A+
Sbjct: 186 CKVAVDELGNSKGYGFVHFDSVDSANAAIEHV 217
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 70/164 (42%), Gaps = 29/164 (17%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKHNADKA 165
AN +Y+ N+ D TE + +LF+ YG+ L + K+ F F+ +A +A
Sbjct: 247 ANFTNVYVKNLDLDTTEEEFTKLFEKYGKITSLSLAKDNAGKFRGFAFVNFATHDSAQQA 306
Query: 166 KAKLDGHVLKGRSL--------------------KIRFAPIN----AAIKVKNLTSCVTN 201
+L+ KG+ L +++ IN + VKNL + +
Sbjct: 307 VDELNDFEYKGKKLYVGRAQKKHERQEELRKQYEQMKLEKINKYQGVNLFVKNLQDEIDD 366
Query: 202 ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
E L+ F FG I A V+ DE SK G V ++ A +A+
Sbjct: 367 ERLKSEFSAFGTITSAKVMTDENNKSKGFGFVCYSNPEEATKAI 410
>gi|355563109|gb|EHH19671.1| Polyadenylate-binding protein 1-like protein [Macaca mulatta]
Length = 614
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 73/144 (50%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ +LKG+ ++I ++ + ++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE G S+ G V F AA QA+
Sbjct: 133 DEHG-SRGFGFVHFETHEAAQQAI 155
Score = 41.6 bits (96), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 33/169 (19%)
Query: 106 KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKH 160
+ ++F N +Y+ N+ D+ E + +LF +G+ + + ++ + FGF+ +
Sbjct: 186 RALEFTN---IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHE 242
Query: 161 NADKAKAKLDGHVLKGR---------------SLKIRFAPIN---------AAIKVKNLT 196
A KA ++G + GR LK RF + + VKNL
Sbjct: 243 EAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLD 302
Query: 197 SCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ ++ L F +G I A V+ E G+SK G V F+ A +A+
Sbjct: 303 DSIDDDKLRKEFSPYGVITSAKVMT-EGGHSKGFGFVCFSSPEEATKAV 350
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + ++ FGF+ + A +A ++G
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSRGFGFVHFETHEAAQQAINTMNG 160
Query: 172 HVLKGRSLKI--------RFAPINA------AIKVKNLTSCVTNELLELAFGVFGDIERA 217
+L R + + R A + A I VKNL V + L+ F FG +
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G+S+C G V F + A +A+
Sbjct: 221 KVMRDNSGHSRCFGFVNFEKHEEAQKAV 248
>gi|207080212|ref|NP_001128842.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|75070631|sp|Q5R8F7.1|PABP1_PONAB RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|55730462|emb|CAH91953.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + + A++A K++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + +E L+ FG FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAV 248
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + +LF +G + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
>gi|432881580|ref|XP_004073850.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 631
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGAIVSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G S+ G V F AA +A+ +
Sbjct: 133 DENG-SRGYGFVHFETHDAAERAIEK 157
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 30/159 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + E+F +G + + ++ FGF+ + +A KA +++
Sbjct: 193 VYIKNFGEDMDDEKLKEIFSKFGNATSVRVMTDESGGGRGFGFVSFENHEDAQKAVDEMN 252
Query: 171 GHVLKGR---------------SLKIRFAPIN---------AAIKVKNLTSCVTNELLEL 206
G L GR LK RF + + VKNL + +E L
Sbjct: 253 GKELNGRIMFVGRAQKKMERQMELKRRFEQMKQDRTTRYQGVNLYVKNLDDGIDDERLRK 312
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 313 EFSPFGSITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
>gi|405122394|gb|AFR97161.1| polyadenylate-binding protein [Cryptococcus neoformans var. grubii
H99]
Length = 670
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 72/148 (48%), Gaps = 14/148 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KAK 166
+ LY+G + +TE + E+F G + + ++ + G+ ++Y + AD +A
Sbjct: 47 SASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 106
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
L+ ++KG+S +I ++ + A++ +KNL + N+ L F FGDI
Sbjct: 107 EHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCK 166
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALR 246
V DE G S+ V ++ AA A++
Sbjct: 167 VGTDENGKSRGFAFVHYSTGEAADAAIK 194
Score = 42.7 bits (99), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 74/166 (44%), Gaps = 33/166 (19%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKA 165
A +Y+ N+ ++T+ + +L KP+G T + ++++ K FGF+ ++ +A KA
Sbjct: 226 AQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYEHHESARKA 285
Query: 166 KAKLDGHVLKGRSL--------------------------KIRFAPINAAIKVKNLTSCV 199
+L+ + G+ L + + A +N + +KNL
Sbjct: 286 VDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVN--LYIKNLDDEW 343
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
++ L F FG I + V+ D+ G S+ G V ++ A +A+
Sbjct: 344 DDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAV 389
>gi|6137350|pdb|1CVJ|A Chain A, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137351|pdb|1CVJ|B Chain B, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137352|pdb|1CVJ|C Chain C, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137353|pdb|1CVJ|D Chain D, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137354|pdb|1CVJ|E Chain E, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137355|pdb|1CVJ|F Chain F, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137356|pdb|1CVJ|G Chain G, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137357|pdb|1CVJ|H Chain H, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
Length = 190
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 76/146 (52%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
>gi|358397912|gb|EHK47280.1| hypothetical protein TRIATDRAFT_165657, partial [Trichoderma
atroviride IMI 206040]
Length = 465
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 73/147 (49%), Gaps = 17/147 (11%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEK-----MFGFIRMDYKHNADKAKAKLD 170
LY+G + +TE+ + ++F+ G Q + I +K +GF+ D AD+A A L+
Sbjct: 78 LYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAADRAMATLN 137
Query: 171 GHVLKGRSLKIRFA-PINAAIK----------VKNLTSCVTNELLELAFGVFGDIERAIV 219
G + +++ +A N K V +L++ V +++L AF FG + A V
Sbjct: 138 GRRVHQSEIRVNWAYQSNTTTKEDTSNHFHIFVGDLSNEVNDDILHQAFSAFGSVSEARV 197
Query: 220 IVDER-GNSKCEGIVEFARKPAAAQAL 245
+ D + G S+ G V F +P A +AL
Sbjct: 198 MWDMKTGRSRGYGFVAFRDRPDAEKAL 224
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLK 175
Y+GN+ T D++ LF+ +G E ++ F FI+MD NA A +++G+ +
Sbjct: 294 CYVGNLTPYTTHTDVVPLFQNFGFVVESRFQADRGFAFIKMDTHENAAMAICQMNGYNVN 353
Query: 176 GRSLKIRF 183
GR LK +
Sbjct: 354 GRPLKCSW 361
>gi|321261800|ref|XP_003195619.1| polyadenylate-binding protein [Cryptococcus gattii WM276]
gi|317462093|gb|ADV23832.1| polyadenylate-binding protein, putative [Cryptococcus gattii WM276]
Length = 675
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 72/148 (48%), Gaps = 14/148 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KAK 166
+ LY+G + +TE + E+F G + + ++ + G+ ++Y + AD +A
Sbjct: 47 SASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 106
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
L+ ++KG+S +I ++ + A++ +KNL + N+ L F FGDI
Sbjct: 107 EHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCK 166
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALR 246
V DE G S+ V ++ AA A++
Sbjct: 167 VGTDENGKSRGFAFVHYSTGEAADAAIK 194
>gi|327357360|gb|EGE86217.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Ajellomyces dermatitidis ATCC 18188]
Length = 492
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 73/147 (49%), Gaps = 17/147 (11%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEK-----MFGFIRMDYKHNADKAKAKLD 170
LY+G + +TE+ + ++F+ G Q + I +K +GF+ D A++A A L+
Sbjct: 94 LYIGGLDARVTEDILRQIFETTGHVQSVKIIPDKNSKGLNYGFVEYDDPGAAERAMATLN 153
Query: 171 GHVLKGRSLKIRFA-----------PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIV 219
G + +++ +A + I V +L++ V +E+L AF FG + A V
Sbjct: 154 GRRVHQSEIRVNWAYQSNNSNKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARV 213
Query: 220 IVDER-GNSKCEGIVEFARKPAAAQAL 245
+ D + G S+ G V F +P A +AL
Sbjct: 214 MWDMKTGRSRGYGFVAFRERPDAEKAL 240
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLK 175
Y+GN+ T+ND+I LF+ +G E ++ F F++MD NA A +L G+ +
Sbjct: 310 CYVGNLTPYTTQNDLIPLFQNFGYVVETRFQADRGFAFVKMDTHENAAMAICQLSGYNVN 369
Query: 176 GRSLKIRF 183
GR LK +
Sbjct: 370 GRPLKCSW 377
>gi|431844457|gb|ELK01429.1| Polyadenylate-binding protein 1-like 2 [Pteropus alecto]
Length = 200
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 75/144 (52%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ ++TE + E F P G + I ++K+ G+ ++Y+ D +A L
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPMDAKRALETL 63
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + +++ +KNL + N+ L F FG+I V
Sbjct: 64 NFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKSIDNKALYNIFSAFGNILSCKVAC 123
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE+G K G V F ++ +A +A+
Sbjct: 124 DEKG-PKGYGFVHFQKQESAERAI 146
>gi|41054387|ref|NP_955999.1| RNA-binding protein 4.1 [Danio rerio]
gi|28277979|gb|AAH46057.1| RNA binding motif protein 4.1 [Danio rerio]
Length = 419
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVL 174
++++GN+ + T +I LF YG+ E I K FGF+ MD K AD+A L ++L
Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIVKN--FGFVHMDSKSEADEAIQNLHHYML 60
Query: 175 KGRSLKIRFA----PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD 222
G ++ + + + V N++S TN+ L F +G + ++ D
Sbjct: 61 NGMAMNVEMSKGKPKTSTKPHVGNISSSCTNQELRAKFEEYGPVVECDIVKD 112
>gi|327263274|ref|XP_003216445.1| PREDICTED: ribonucleoprotein PTB-binding 1-like [Anolis
carolinensis]
Length = 680
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 69/137 (50%), Gaps = 2/137 (1%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168
+F N ++ + + D+ ++ +L Y E + F++K K F+ A+ A K
Sbjct: 53 QFRNRRKVLIRGLPADVANQEVHDLLSDY-ELKYCFVDKYKGTAFVTFLNGEQAESAIKK 111
Query: 169 LDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDER-GNS 227
L+ + + ++ P +A + + NL T + E FG++ER ++ +E+ G+S
Sbjct: 112 FHLSKLRDKEITVQLQPTDALLCIANLPQLYTQQQFEDLVRPFGNLERCFLVYNEKTGHS 171
Query: 228 KCEGIVEFARKPAAAQA 244
K G VE+ +K +AA+A
Sbjct: 172 KGYGFVEYMKKDSAARA 188
>gi|194224457|ref|XP_001500563.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Equus
caballus]
Length = 612
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 73/144 (50%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + ++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
D+ G S+ G V F AA QA+
Sbjct: 133 DDHG-SRGFGFVHFETHEAAQQAI 155
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 30/159 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLD 170
+Y+ N+ G + E + +LF +G+ + + ++ + FGF+ + A KA ++
Sbjct: 193 IYVKNLPGHVDERGLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVMDMN 252
Query: 171 GHVLKGR---------------SLKIRFAPIN---------AAIKVKNLTSCVTNELLEL 206
G + GR LK RF + VKNL + +E L
Sbjct: 253 GMQVSGRLLYVGRAQKRGERQNELKRRFEHTKQDRLNRCQGVNLYVKNLDDSIDDEKLRK 312
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F +G I A V+ E G+SK G V F+ A +A+
Sbjct: 313 EFSPYGVITSAKVMT-EGGHSKGFGFVCFSSPEEATKAV 350
>gi|281212216|gb|EFA86376.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 562
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 74/151 (49%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKA 165
++ LY+G++ D++E+ + E+F G L I ++ + +I +A++A
Sbjct: 6 SSSSLYVGDLHPDVSESHLFEVFNQVGPVANLRICRDNTTRRSLSYAYINYHNSTDAERA 65
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
L+ +KG++ +I ++ + +++ +KNL V ++ L F FG+I
Sbjct: 66 LDTLNNTPIKGKACRIMWSQRDPSLRKSGIGNIFIKNLDKTVDHKALYDTFSAFGNILSC 125
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V+ DE SK G V + + +A +A+ +
Sbjct: 126 KVVTDETNTSKGFGFVHYESQESAEKAIAKV 156
Score = 45.1 bits (105), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 64/148 (43%), Gaps = 20/148 (13%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+++ N+ + + + F +G + N K FGF+ + + +A+KA AK++
Sbjct: 98 IFIKNLDKTVDHKALYDTFSAFGNILSCKVVTDETNTSKGFGFVHYESQESAEKAIAKVN 157
Query: 171 GHVLKGRSLKIRFAPINAA-------------IKVKNLTSCVTNELLELAFGVFGDIERA 217
G ++ + K+ P ++ + +KNL+ V+ + L G I
Sbjct: 158 GMMINNQ--KVFVGPFKSSKERGATQEVKYTNVFIKNLSEDVSEQQLTDLLQAHGKITNL 215
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
++ DE+G SK G F AA A+
Sbjct: 216 CIMTDEKGKSKGFGFANFEHADAAKGAV 243
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 76/166 (45%), Gaps = 30/166 (18%)
Query: 105 NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYK 159
+++K+ N +++ N+ D++E + +L + +G+ L I K K FGF ++
Sbjct: 180 TQEVKYTN---VFIKNLSEDVSEQQLTDLLQAHGKITNLCIMTDEKGKSKGFGFANFEHA 236
Query: 160 HNADKAKAKLDGHVLKGRSLKI-------------------RFAPINAAIKVKNLTSCVT 200
A A +G + G+ + + ++ +N + +KNL +
Sbjct: 237 DAAKGAVENENGKMFSGKVIYVGRAQKKLEREAELKHKFETKYQGVN--LYIKNLDDSID 294
Query: 201 NELLELAFGVFGDIERAIVIVDERG-NSKCEGIVEFARKPAAAQAL 245
++ L F +G I + V+ D++G +SK G V ++ A++A+
Sbjct: 295 SDKLRATFSAYGTITSSKVMRDDKGSSSKGFGFVCYSTPDEASKAV 340
>gi|173421|gb|AAA35320.1| poly(A)-binding protein, partial [Schizosaccharomyces pombe]
Length = 628
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKA 165
+ LY+G + +TE + ELF G + + ++ + + ++ + +KA
Sbjct: 64 TSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKA 123
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
+L+ ++KGR +I ++ + +++ +KNL + N+ L F FG I
Sbjct: 124 LDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSC 183
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V VDE GN+K G V F +A A+
Sbjct: 184 KVAVDELGNAKGYGFVHFDSVESANAAIEHV 214
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 29/164 (17%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKA 165
AN +Y+ N+ +ITE + +LF +GE L + +K + FGF+ A KA
Sbjct: 244 ANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKA 303
Query: 166 KAKLDGHVLKGRSL--------------------KIRFAPIN----AAIKVKNLTSCVTN 201
+L+ KG+ L +++ +N + +KNL V +
Sbjct: 304 VDELNDKEYKGKKLYVGRAQKKHEREEELRKAYEQMKLEKMNKYQGVNLFIKNLQDEVDD 363
Query: 202 ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
E L+ F FG I A ++ DE+G SK G V + A +A+
Sbjct: 364 ERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAV 407
>gi|58271356|ref|XP_572834.1| polyadenylate-binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|134114714|ref|XP_774065.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338819167|sp|P0CP47.1|PABP_CRYNB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|338819168|sp|P0CP46.1|PABP_CRYNJ RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|50256695|gb|EAL19418.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229093|gb|AAW45527.1| polyadenylate-binding protein, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 673
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 72/148 (48%), Gaps = 14/148 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KAK 166
+ LY+G + +TE + E+F G + + ++ + G+ ++Y + AD +A
Sbjct: 45 SASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 104
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
L+ ++KG+S +I ++ + A++ +KNL + N+ L F FGDI
Sbjct: 105 EHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCK 164
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALR 246
V DE G S+ V ++ AA A++
Sbjct: 165 VGTDENGKSRGFAFVHYSTGEAADAAIK 192
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 33/166 (19%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKA 165
A +Y+ N+ ++T+ + +L KP+G T + ++++ K FGF+ + +A KA
Sbjct: 224 AQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKA 283
Query: 166 KAKLDGHVLKGRSL--------------------------KIRFAPINAAIKVKNLTSCV 199
+L+ + G+ L + + A +N + VKNL
Sbjct: 284 VDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVN--LYVKNLDDEW 341
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
++ L F FG I + V+ D+ G S+ G V ++ A +A+
Sbjct: 342 DDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAV 387
>gi|225458678|ref|XP_002284923.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147773643|emb|CAN76464.1| hypothetical protein VITISV_017035 [Vitis vinifera]
Length = 640
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 76/152 (50%), Gaps = 14/152 (9%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAK 166
AN LY+G++ +IT++ + +LF G+ + + ++ + G+ ++Y + D A+
Sbjct: 15 ANTASLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLSTRRSLGYGYVNYSNPQDAAR 74
Query: 167 A--KLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIER 216
A L+ L G+ ++I ++ + +I+ +KNL + N+ L F FG+I
Sbjct: 75 ALDLLNFTPLNGKPIRIMYSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFSAFGNILS 134
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
+ D G SK G V+F + +A A+ +
Sbjct: 135 CKIATDPSGQSKGYGFVQFDNEESAQNAIDKL 166
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 17/148 (11%)
Query: 105 NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYK 159
+ I+ + +++ N+ I + + F +G I + K +GF++ D +
Sbjct: 97 DPSIRKSGTANIFIKNLDKSIDNKALHDTFSAFGNILSCKIATDPSGQSKGYGFVQFDNE 156
Query: 160 HNADKAKAKLDGHVLKGRSLKI--------RFAPINAA----IKVKNLTSCVTNELLELA 207
+A A KL+G ++ + + + R +N + VKNL+ T E L+
Sbjct: 157 ESAQNAIDKLNGMLINDKQVYVGQFLRKQERETALNKTKFNNVYVKNLSESTTEEDLKNI 216
Query: 208 FGVFGDIERAIVIVDERGNSKCEGIVEF 235
FG FG I +V+ D G SKC G V F
Sbjct: 217 FGEFGIITSVVVMRDGDGKSKCFGFVNF 244
Score = 38.9 bits (89), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 36/168 (21%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNAD 163
KF N +Y+ N+ TE D+ +F +G + + K K FGF+ + +A
Sbjct: 195 KFNN---VYVKNLSESTTEEDLKNIFGEFGIITSVVVMRDGDGKSKCFGFVNFENADDAA 251
Query: 164 KAKAKLDGHV--------------------LKGR---SLK---IRFAPINAAIKVKNLTS 197
+A L+G LKGR S+K +F +N + +KNL
Sbjct: 252 EAVEALNGKKFDEKEWYVGKAQKKYERELELKGRFEQSMKEVVDKFQGVN--LYIKNLDD 309
Query: 198 CVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ ++ L+ F FG I V+ D G S+ G V F+ A++AL
Sbjct: 310 SIGDDKLKELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRAL 357
>gi|340905400|gb|EGS17768.1| putative polyadenylated RNA protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 485
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 105 NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADK 164
N+ + C Y+GN+ T+ND++ LF+ +G E + ++ F FI+MD NA
Sbjct: 302 NQTPAWQTTC--YVGNLTPYTTQNDLVPLFQNFGYVVECRMQADRGFAFIKMDSHENAAM 359
Query: 165 AKAKLDGHVLKGRSLKIRF 183
A +L+G+++ GR LK +
Sbjct: 360 AICQLNGYMVNGRPLKCSW 378
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 81/177 (45%), Gaps = 18/177 (10%)
Query: 86 EKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI 145
E I PT + P P + N LY+G + +TE+ + ++F+ G Q + I
Sbjct: 66 ENKTNIMSPTNNAP-HFPGRRAAPEPNKRALYVGGLDPRVTEDVLRQIFETTGHVQSVKI 124
Query: 146 NKEK-----MFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA--PINA---------A 189
+K +GF+ D A++A L+G + +++ +A NA
Sbjct: 125 IPDKNHRGYNYGFVEYDDPGAAERAMQTLNGRRVHQNEIRVNWAYQSNNANKEDTSNHFH 184
Query: 190 IKVKNLTSCVTNELLELAFGVFGDIERAIVIVDER-GNSKCEGIVEFARKPAAAQAL 245
I V +L++ V +E+L AF FG I A V+ D + G S+ G V F + A +AL
Sbjct: 185 IFVGDLSNEVNDEVLWQAFSAFGSISEARVMWDMKTGRSRGYGFVAFRERADAEKAL 241
>gi|302754900|ref|XP_002960874.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
gi|302767436|ref|XP_002967138.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300165129|gb|EFJ31737.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300171813|gb|EFJ38413.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
Length = 619
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 75/150 (50%), Gaps = 14/150 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAK 166
+ LY+G++ +++EN + +LF G+ + + ++ M + ++ + +A +A
Sbjct: 3 STSLYVGDLDPNVSENQLYDLFNQIGQVLSIRVCRDLMTRRSLGYAYVNYNNVQDATRAL 62
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
L+ + G++++I F+ + +I+ +KNL + N+ L F FG+I
Sbjct: 63 ELLNFTPVNGKAVRIMFSHRDPSIRKSGTANIFIKNLDRAIDNKALHDTFVSFGNILSCK 122
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V D G SK G V+F ++ +A A+ +
Sbjct: 123 VATDSNGQSKGYGFVQFEQEESAQVAIDKV 152
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 71/159 (44%), Gaps = 22/159 (13%)
Query: 105 NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYK 159
+ I+ + +++ N+ I + + F +G + + K +GF++ + +
Sbjct: 83 DPSIRKSGTANIFIKNLDRAIDNKALHDTFVSFGNILSCKVATDSNGQSKGYGFVQFEQE 142
Query: 160 HNADKAKAKLDGHVLKGRSLKI-------------RFAPINAAIKVKNLTSCVTNELLEL 206
+A A K++G ++ + + + +F + VKNL T++ L+
Sbjct: 143 ESAQVAIDKVNGMLVAEKQVFVGPFVRRQEREQNGKFN----NVFVKNLGESTTDDELKE 198
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
FG FG I A+V+ D G SKC G V F AA+A+
Sbjct: 199 VFGAFGKITSAVVMRDSDGKSKCFGFVNFENPDEAAKAV 237
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 66/157 (42%), Gaps = 32/157 (20%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNAD 163
KF N +++ N+G T++++ E+F +G+ + K K FGF+ + A
Sbjct: 178 KFNN---VFVKNLGESTTDDELKEVFGAFGKITSAVVMRDSDGKSKCFGFVNFENPDEAA 234
Query: 164 KAKAKLDGHVLKGRSLKI--------RFAPINAA----------------IKVKNLTSCV 199
KA L+G ++ + + R A + A + +KNL V
Sbjct: 235 KAVVGLNGKKIEDKEWYVGRAQKKSEREAELRAKYEQERKERIDRYQGANLYLKNLDDDV 294
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFA 236
+E L F FG I V+ D +G SK G V ++
Sbjct: 295 DDERLREIFADFGSITSCKVMRDAQGQSKGSGFVAYS 331
>gi|254567738|ref|XP_002490979.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|238030776|emb|CAY68699.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|328352488|emb|CCA38887.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Komagataella pastoris CBS 7435]
Length = 626
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 68/146 (46%), Gaps = 14/146 (9%)
Query: 114 CRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKA 167
LY+G + +TE+D+ E F P G + + ++ + +G++ + ++A
Sbjct: 52 ASLYVGELDPTVTESDLYEFFSPIGSVNSIRVCRDAVTKRSLGYGYVNFHSQAAGERALE 111
Query: 168 KLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIV 219
+L+ +KG ++ ++ + +++ +KNL + N+ L F FG + V
Sbjct: 112 ELNYAEIKGVRCRLMWSQRDPSLRRSGSGNIFIKNLDPAIENKTLHDTFSSFGKVLSCKV 171
Query: 220 IVDERGNSKCEGIVEFARKPAAAQAL 245
DE GNSK G V + AA A+
Sbjct: 172 ATDENGNSKGFGFVHYESDEAAQAAI 197
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 69/165 (41%), Gaps = 33/165 (20%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAK 166
N +++ N + TE+++ ELF+ YG + + + K FGF+ +A KA
Sbjct: 231 NYTNVFVKNFDTESTEDELRELFESYGPITSIHLQVDSEGHNKGFGFVNFAEHDDAVKAV 290
Query: 167 AKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVT 200
L+ KG+ L + ++ +N + +KNL +
Sbjct: 291 EALNDKEYKGKPLYVGRAQKKNERVHELTKKYEADRLEKLQKYQSVN--LFIKNLDESID 348
Query: 201 NELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ LE F FG I A V++DE G S+ G V + A +A+
Sbjct: 349 DARLEEEFKPFGTITSAKVMLDENGKSRGFGFVCLSTPEEATKAI 393
>gi|389608229|dbj|BAM17726.1| polyA-binding protein [Papilio xuthus]
Length = 619
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 74/147 (50%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKAK--L 169
LY+G++ DITE + E F G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALEGM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++KGR ++I ++ + +++ +KNL + N+ + F FG+I V
Sbjct: 73 NFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFTAFGNILSCKVAQ 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE G SK G V F + AA +++ +
Sbjct: 133 DETGASKGYGFVHFETEEAANKSIEKV 159
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 22/154 (14%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + + F +G + ++ K +GF+ + + A+K+ K++
Sbjct: 101 VFIKNLDKTIDNKAMYDTFTAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 160
Query: 171 GHVLKGRSLKI-RFAP-------------INAAIKVKNLTSCVTNELLELAFGVFGDIER 216
G +L G+ + + RF P + + VKN ++E+L F +G I
Sbjct: 161 GMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLREMFEKYGRITS 220
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQALRRCAE 250
V+ E G+S+ G V F P AA+ R C E
Sbjct: 221 HKVMYKEDGSSRGFGFVAF-EDPDAAE--RACME 251
Score = 41.6 bits (96), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 35/162 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGE-TQELFINKE----KMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D ++ + E+F+ YG T + KE + FGF+ + A++A +L+
Sbjct: 194 VYVKNFGEDFSDEMLREMFEKYGRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACMELN 253
Query: 171 G-HVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNEL 203
G +++G+ L + R+ +N + VKNL + +E
Sbjct: 254 GKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN--LYVKNLDDTIDDER 311
Query: 204 LELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
L F FG I A V++++ G SK G V F+ A +A+
Sbjct: 312 LRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAV 352
>gi|255555393|ref|XP_002518733.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223542114|gb|EEF43658.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 644
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 17/147 (11%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + + F +G + + K +GF++ D + +A KA KL+
Sbjct: 114 IFIKNLDKGIDHKALHDTFSAFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLN 173
Query: 171 GHVLKGRSLKI--------RFAPINAA----IKVKNLTSCVTNELLELAFGVFGDIERAI 218
G +L + + + R + I+ + VKNL+ T E L+ AFG +G I A+
Sbjct: 174 GMLLNDKQVYVGPFLRKQERESAIDKTRFNNVYVKNLSETTTEEDLKKAFGEYGTITSAV 233
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G +KC G V F AA A+
Sbjct: 234 VMRDGDGKTKCFGFVNFENADDAATAV 260
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGET------QELFINKEKMFGFIRMDYKHNADKAK 166
LY+G++ ++T++ + +LF G+ ++L + +G++ +A +A
Sbjct: 23 TTSLYVGDLEANVTDSHLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSSPQDAARAL 82
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
L+ L G ++I ++ + +++ +KNL + ++ L F FG+I
Sbjct: 83 DMLNFTPLNGSPIRIMYSHRDPSVRKSGSGNIFIKNLDKGIDHKALHDTFSAFGNILSCK 142
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V D G SK G V+F + +A +A+ +
Sbjct: 143 VATDSSGQSKGYGFVQFDNEESAQKAIEKL 172
Score = 45.4 bits (106), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 63/159 (39%), Gaps = 29/159 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N+ TE D+ + F YG + K K FGF+ + +A A L+
Sbjct: 205 VYVKNLSETTTEEDLKKAFGEYGTITSAVVMRDGDGKTKCFGFVNFENADDAATAVEALN 264
Query: 171 GHVLKGRS---------------LKIRFAPI---------NAAIKVKNLTSCVTNELLEL 206
G + LK+RF A + +KNL + ++ L+
Sbjct: 265 GKKFDDKEWFVGKAQKKNERENELKVRFEQSMKEAADKFQGANLYIKNLDDSIGDDRLKQ 324
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I V+ D G S+ G V F+ A++AL
Sbjct: 325 LFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASKAL 363
>gi|71993203|ref|NP_001021709.1| Protein PAB-1, isoform a [Caenorhabditis elegans]
gi|3880681|emb|CAA21572.1| Protein PAB-1, isoform a [Caenorhabditis elegans]
Length = 646
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 73/147 (49%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+ E+ + E F G + + ++ G+ ++++ AD +A +
Sbjct: 34 LYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTM 93
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ L G+ ++I ++ + A++ +KNL + N+ + F +FG+I V +
Sbjct: 94 NFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAI 153
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE G SK G V F + AA A+++
Sbjct: 154 DEDGFSKGYGFVHFETEEAAQNAIQKV 180
Score = 42.4 bits (98), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 62/160 (38%), Gaps = 30/160 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+Y+ N G + + +LF +G + K K FGF+ A+ A L
Sbjct: 215 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHD 274
Query: 172 HVLKGRSLKI----------RFAPIN----------------AAIKVKNLTSCVTNELLE 205
++G LK+ R A + + VKNL V ++ L+
Sbjct: 275 STIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLK 334
Query: 206 LAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F +G+I A V+ DE G SK G V F + A A+
Sbjct: 335 KQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAV 374
>gi|403290728|ref|XP_003936459.1| PREDICTED: polyadenylate-binding protein 1-like [Saimiri
boliviensis boliviensis]
Length = 614
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 73/144 (50%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ +LKG+ ++I ++ + ++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE G S+ G V F AA QA+
Sbjct: 133 DEHG-SRGFGFVHFETYEAAQQAI 155
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + ++ FGF+ + A +A ++G
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSRGFGFVHFETYEAAQQAINTMNG 160
Query: 172 HVLKGRSLKI--------RFAPINA------AIKVKNLTSCVTNELLELAFGVFGDIERA 217
+L R + + R A + A I VKNL + V + L+ F FG +
Sbjct: 161 MLLNDRKVFVGHFKSRRERAAELGARALEFTNIYVKNLPADVDEQGLQDLFSQFGKMLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G S+C G V F + A +A+
Sbjct: 221 KVMRDSSGRSRCFGFVNFEKHEEAQKAV 248
Score = 38.9 bits (89), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 71/169 (42%), Gaps = 33/169 (19%)
Query: 106 KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKH 160
+ ++F N +Y+ N+ D+ E + +LF +G+ + + ++ + FGF+ +
Sbjct: 186 RALEFTN---IYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRDSSGRSRCFGFVNFEKHE 242
Query: 161 NADKAKAKLDGHVLKGR---------------SLKIRFAPIN---------AAIKVKNLT 196
A KA ++G + GR LK RF + + VKNL
Sbjct: 243 EAQKAVVHMNGKEVSGRLLYASRAQKRVERQNELKRRFEQMKQDRLSRYQGVNLYVKNLD 302
Query: 197 SCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ + L F +G I A V+ E +SK G V F+ A +A+
Sbjct: 303 DSIDDGKLRKEFSPYGVITSAKVMT-EGSHSKGFGFVCFSSPEEATKAV 350
>gi|384496545|gb|EIE87036.1| hypothetical protein RO3G_11747 [Rhizopus delemar RA 99-880]
Length = 616
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 74/150 (49%), Gaps = 14/150 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KAK 166
+ LY+G + +TE + E+F G + + ++ + G+ +++ + D +A
Sbjct: 38 SASLYVGELDPSVTEAMLFEMFNMIGPVASIRVCRDAVTRRSLGYAYVNFHNIVDGERAL 97
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
L+ ++KG+ +I ++ + +++ +KNL + + N+ L F FG+I
Sbjct: 98 ESLNYTLIKGKPCRIMWSQRDPSLRKTGSGNVFIKNLDTSIDNKALHDTFSAFGNILSCK 157
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALRRC 248
+ +DE GNSK G V + + AA A++
Sbjct: 158 IALDESGNSKGYGFVHYETEEAADNAIKHV 187
Score = 45.1 bits (105), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 19/149 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + + F +G I K +GF+ + + AD A +D
Sbjct: 129 VFIKNLDTSIDNKALHDTFSAFGNILSCKIALDESGNSKGYGFVHYETEEAADNAIKHVD 188
Query: 171 GHVLKGRSLKI-RFAP----------INAA---IKVKNLTSCVTNELLELAFGVFGDIER 216
G +L + + + R P I A + VKNL + +E + F FG I
Sbjct: 189 GMLLNDKKVYVGRHIPRKERQAKIEQIRAKFTNVYVKNLDESINDEQFKEMFSKFGPITS 248
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQAL 245
A+V DE G SK G + F A +A+
Sbjct: 249 ALVQTDEEGKSKGFGFINFENYEDAHKAV 277
>gi|302142286|emb|CBI19489.3| unnamed protein product [Vitis vinifera]
Length = 621
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 76/152 (50%), Gaps = 14/152 (9%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAK 166
AN LY+G++ +IT++ + +LF G+ + + ++ + G+ ++Y + D A+
Sbjct: 15 ANTASLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLSTRRSLGYGYVNYSNPQDAAR 74
Query: 167 A--KLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIER 216
A L+ L G+ ++I ++ + +I+ +KNL + N+ L F FG+I
Sbjct: 75 ALDLLNFTPLNGKPIRIMYSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFSAFGNILS 134
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
+ D G SK G V+F + +A A+ +
Sbjct: 135 CKIATDPSGQSKGYGFVQFDNEESAQNAIDKL 166
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 17/148 (11%)
Query: 105 NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYK 159
+ I+ + +++ N+ I + + F +G I + K +GF++ D +
Sbjct: 97 DPSIRKSGTANIFIKNLDKSIDNKALHDTFSAFGNILSCKIATDPSGQSKGYGFVQFDNE 156
Query: 160 HNADKAKAKLDGHVLKGRSLKI--------RFAPINAA----IKVKNLTSCVTNELLELA 207
+A A KL+G ++ + + + R +N + VKNL+ T E L+
Sbjct: 157 ESAQNAIDKLNGMLINDKQVYVGQFLRKQERETALNKTKFNNVYVKNLSESTTEEDLKNI 216
Query: 208 FGVFGDIERAIVIVDERGNSKCEGIVEF 235
FG FG I +V+ D G SKC G V F
Sbjct: 217 FGEFGIITSVVVMRDGDGKSKCFGFVNF 244
Score = 38.9 bits (89), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 36/168 (21%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNAD 163
KF N +Y+ N+ TE D+ +F +G + + K K FGF+ + +A
Sbjct: 195 KFNN---VYVKNLSESTTEEDLKNIFGEFGIITSVVVMRDGDGKSKCFGFVNFENADDAA 251
Query: 164 KAKAKLDGHV--------------------LKGR---SLK---IRFAPINAAIKVKNLTS 197
+A L+G LKGR S+K +F +N + +KNL
Sbjct: 252 EAVEALNGKKFDEKEWYVGKAQKKYERELELKGRFEQSMKEVVDKFQGVN--LYIKNLDD 309
Query: 198 CVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ ++ L+ F FG I V+ D G S+ G V F+ A++AL
Sbjct: 310 SIGDDKLKELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRAL 357
>gi|157817831|ref|NP_001099621.1| poly(A) binding protein, cytoplasmic 2 [Rattus norvegicus]
gi|149017412|gb|EDL76463.1| poly A binding protein, cytoplasmic 2 (predicted) [Rattus
norvegicus]
Length = 630
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGHGFVHFETEEAAERAIEK 157
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K GF+ + + A++A K++G
Sbjct: 101 VFIKNLNKTIDNKALYDTFSAFGNILSCKVVCDENGSKGHGFVHFETEEAAERAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + K +KN + ++ L FG FG +
Sbjct: 161 MLLNDRKVFVGQFKSRKEREAELGTRTKEFTNVYIKNFGDRMDDKTLNGLFGRFGQVLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDEGGKSKGFGFVSFERHEDAQKAV 248
Score = 38.5 bits (88), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G + + + LF +G+ + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLK--------------------------IRFAPINAAIKVKNLTSCVTNELL 204
G L G+ + IR+ IN + VKNL + +E L
Sbjct: 253 GKELNGKHIYVGPAQKKVDRHIELKRKFEQVTQDRGIRYQGIN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ F FG I V+ E G SK G V F+ A +A+
Sbjct: 311 QKEFSPFGTITSTKVMT-EGGRSKGFGFVCFSSPEEATKAV 350
>gi|359081870|ref|XP_003588203.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like 2A [Bos
taurus]
gi|395862938|ref|XP_003803673.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Otolemur
garnettii]
Length = 200
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 75/144 (52%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ ++TE + E F P G + I ++K+ G+ ++Y+ D +A L
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + +++ +KNL + N+ L F FG+I V
Sbjct: 64 NFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVAC 123
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE+G K G V F ++ +A +A+
Sbjct: 124 DEKG-PKGYGFVHFQKQESAERAI 146
>gi|348570494|ref|XP_003471032.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Cavia
porcellus]
Length = 200
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 75/144 (52%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ ++TE + E F P G + I ++K+ G+ ++Y+ D +A L
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + +++ +KNL + N+ L F FG+I V
Sbjct: 64 NFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVAC 123
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE+G K G V F ++ +A +A+
Sbjct: 124 DEKG-PKGYGFVHFQKQESAERAI 146
>gi|291407697|ref|XP_002720156.1| PREDICTED: polyadenylate-binding protein 1-like [Oryctolagus
cuniculus]
gi|301792853|ref|XP_002931393.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Ailuropoda
melanoleuca]
gi|311276495|ref|XP_003135232.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Sus scrofa]
gi|335306198|ref|XP_003360416.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Sus scrofa]
gi|281338845|gb|EFB14429.1| hypothetical protein PANDA_022442 [Ailuropoda melanoleuca]
Length = 200
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 75/144 (52%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ ++TE + E F P G + I ++K+ G+ ++Y+ D +A L
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + +++ +KNL + N+ L F FG+I V
Sbjct: 64 NFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVAC 123
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE+G K G V F ++ +A +A+
Sbjct: 124 DEKG-PKGYGFVHFQKQESAERAI 146
>gi|124505421|ref|XP_001351452.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
gi|23498210|emb|CAD49181.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
Length = 358
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 67/145 (46%), Gaps = 14/145 (9%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAK 168
+ ++G I IT I E F+ YG Q + I ++ F F+ M + +K +
Sbjct: 115 KFFIGGIPQYITSKHITEYFEQYGTVQHVVIAQDHETKRNRGFAFVTM--ASHINKERIL 172
Query: 169 LDGHVLKGRSLKIR----FAP--INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD 222
D H L G+ + +R P I I V L T + LE F FG+I+ +++D
Sbjct: 173 RDTHELNGKRVDVREENNTTPSDIQRKIFVGGLNYYWTKDTLESYFSTFGEIDVVQIVLD 232
Query: 223 ERGNSKCEGIVEFARKPAAAQALRR 247
G S+C G V F+ + + A+ L+
Sbjct: 233 SSGRSRCFGFVVFSNENSVAKVLKH 257
>gi|403271841|ref|XP_003927812.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Saimiri boliviensis boliviensis]
Length = 647
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 80/155 (51%), Gaps = 19/155 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE+ + F G + I ++++ G+ +++ H AD KA +
Sbjct: 289 LYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQLTRRSLGYAYVNFLHLADAQKALDTM 348
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V++G+S+++ ++ +A ++ +KNL + N+ L F FG I + V+
Sbjct: 349 NFDVIQGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGRILSSKVMS 408
Query: 222 DERGNSKCEGIVEFARKPAAAQALR----RCAEGC 252
D++G SK V F + AA +A+ + +GC
Sbjct: 409 DDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLQGC 442
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 33/174 (18%)
Query: 101 SEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIR 155
+E ++K +F N +Y+ N GGD+ + + ++F YG+T + + K K FGF+
Sbjct: 457 AELRSKASEFTN---VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVS 513
Query: 156 MDYKHNADKAKAKLDGHVLKGR---------------SLKIRFAPIN---------AAIK 191
D A KA +++G + G+ LK F + +
Sbjct: 514 FDSHEAAKKAVEEMNGRDINGQLIFVARAQKKVERQAELKQMFEQLKNERIRGCQVVKLY 573
Query: 192 VKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
VKNL + +E L F FG I R + ++ E G SK G++ F+ A +A+
Sbjct: 574 VKNLDDTIDDEKLRKEFSSFGSISR-VKVMQEEGQSKGFGLICFSSPEDALKAM 626
>gi|47219550|emb|CAG09904.1| unnamed protein product [Tetraodon nigroviridis]
Length = 623
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 73/146 (50%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKL 169
LY+G++ DITE + E F P G + + ++ + + ++ +A++A +
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQDAADRAIEK 157
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + ELF YG+T + + K + FGFI + +A+KA ++
Sbjct: 193 VYIKNFGDDMNDERLKELFDKYGKTLSVKVMTDPTGKSRGFGFISYEKHEDANKAVEDMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+++ + R+ +N + +KNL + +E L
Sbjct: 253 GTELNGKTVFVGRAQKKMERQAELKRKFEMLKQERISRYQGVN--LYIKNLDDTIDDEKL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V+++E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGSITSAKVMLEE-GRSKGFGFVCFSSPEEATKAV 350
>gi|359495203|ref|XP_002263507.2| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein 3
[Vitis vinifera]
Length = 1093
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 20/169 (11%)
Query: 102 EPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRM 156
+P + FAN +++ N+ I +++ F +G I + K +GF++
Sbjct: 552 DPSIRKSGFAN---VFIKNLDPSIDNKALLDTFAAFGTVLSCKIALDNNGQSKGYGFVQF 608
Query: 157 DYKHNADKAKAKLDGHVLKGRSLKIRF------------APINAAIKVKNLTSCVTNELL 204
+ + A A +L+G ++ + + + +P + VKNL+ T++ L
Sbjct: 609 EQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQERNRGNGSPKFTNVYVKNLSETTTDDDL 668
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCF 253
+ FG +G I A+V+ D G SKC G V F +AA A+ F
Sbjct: 669 KNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLNGATF 717
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 72/153 (47%), Gaps = 15/153 (9%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNA 162
+FAN LY+G++ I E + +LF+ + + +++ + ++ +A
Sbjct: 469 RFAN-ASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDA 527
Query: 163 DKAKAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDI 214
A L+ L G+ ++I F+ + +I+ +KNL + N+ L F FG +
Sbjct: 528 TNALEHLNFTPLNGKPIRIMFSHRDPSIRKSGFANVFIKNLDPSIDNKALLDTFAAFGTV 587
Query: 215 ERAIVIVDERGNSKCEGIVEFARKPAAAQALRR 247
+ +D G SK G V+F ++ AA A++R
Sbjct: 588 LSCKIALDNNGQSKGYGFVQFEQEEAAQNAIKR 620
Score = 45.4 bits (106), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 69/171 (40%), Gaps = 33/171 (19%)
Query: 105 NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYK 159
N KF N +Y+ N+ T++D+ +F YG + ++ K FGF+
Sbjct: 646 NGSPKFTN---VYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSS 702
Query: 160 HNADKAKAKLDG---------HVLKGRSLKIRFAPINAA----------------IKVKN 194
+A A L+G +V K + R A + A + +KN
Sbjct: 703 DSAAAAVEHLNGATFNDDKVWYVGKAQRKSEREAELRAKFEQERKNKFEKFKGTNLYLKN 762
Query: 195 LTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
L V +E L+ F FG I V++D +G SK G V F A +AL
Sbjct: 763 LDDSVNDEKLKELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATRAL 813
>gi|780291|gb|AAA65224.1| polyadenylate-binding protein [Caenorhabditis elegans]
Length = 646
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 73/147 (49%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+ E+ + E F G + + ++ G+ ++++ AD +A +
Sbjct: 34 LYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTM 93
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ L G+ ++I ++ + A++ +KNL + N+ + F +FG+I V +
Sbjct: 94 NFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAI 153
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE G SK G V F + AA A+++
Sbjct: 154 DEDGFSKGYGFVHFETEEAAQNAIQKV 180
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 62/160 (38%), Gaps = 30/160 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+Y+ N G + + ++F +G + K K FGF+ A+ A L
Sbjct: 215 VYVKNFGDHYNKETLEKVFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHD 274
Query: 172 HVLKGRSLKI----------RFAPIN----------------AAIKVKNLTSCVTNELLE 205
++G LK+ R A + + VKNL V ++ L+
Sbjct: 275 STIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLK 334
Query: 206 LAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F +G+I A V+ DE G SK G V F + A A+
Sbjct: 335 KQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAV 374
>gi|395863403|ref|XP_003803885.1| PREDICTED: polyadenylate-binding protein 1-like 2-like, partial
[Otolemur garnettii]
Length = 203
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 75/144 (52%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ ++TE + E F P G + I ++K+ G+ ++Y+ D +A L
Sbjct: 7 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 66
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + +++ +KNL + N+ L F FG+I V
Sbjct: 67 NFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVAC 126
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE+G K G V F ++ +A +A+
Sbjct: 127 DEKG-PKGYGFVHFQKQESAERAI 149
>gi|293337013|ref|NP_001169661.1| uncharacterized protein LOC100383542 [Zea mays]
gi|224030689|gb|ACN34420.1| unknown [Zea mays]
Length = 442
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 32/173 (18%)
Query: 104 QNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDY 158
+++++KF N +Y+ N+ + +E+D+ + F P+GE + ++ K FGF+
Sbjct: 169 RDREVKFTN---VYIKNLPTEFSEDDLRQEFAPFGEITSAVVMRDADGASKCFGFVNFKK 225
Query: 159 KHNADKAKAKLDGHVLKGRSL---------------KIRFA---------PINAAIKVKN 194
A +A K +G + ++L K RF P + +KN
Sbjct: 226 PEFAIEAVEKANGKAIGDKTLYVGRAQKKEERKAELKTRFGRGRDNKVDKPNGINLYLKN 285
Query: 195 LTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRR 247
+ + +E L+ F FG + V+VD RG SK G V FA A +A+ R
Sbjct: 286 IDDGINDEGLKKLFEEFGQVASCKVMVDARGRSKGSGFVSFATAEAGQRAINR 338
>gi|444516866|gb|ELV11302.1| Polyadenylate-binding protein 1-like 2 [Tupaia chinensis]
Length = 200
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 75/144 (52%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ ++TE + E F P G + I ++K+ G+ ++Y+ D +A L
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + +++ +KNL + N+ L F FG+I V
Sbjct: 64 NFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVAC 123
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE+G K G V F ++ +A +A+
Sbjct: 124 DEKG-PKGYGFVHFQKQESAERAI 146
>gi|344279674|ref|XP_003411612.1| PREDICTED: polyadenylate-binding protein 1 [Loxodonta africana]
Length = 612
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 70/144 (48%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKL 169
LY+G++ D+TE + E F P G + + ++ + +I +A++A +
Sbjct: 13 LYVGDLHADVTEAMLYEKFLPAGPILSIRVCRDVATRRSLRYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + ++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE G S+ G V F AA QA+
Sbjct: 133 DEHG-SRGFGFVHFETHEAAQQAI 155
Score = 42.0 bits (97), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 37/176 (21%)
Query: 101 SEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIR 155
+E + + ++F N +Y+ N+ D+ E + +LF +G+ + + K+ + FGF+
Sbjct: 181 AELRARAMEFTN---IYVKNLQVDMDEQGLQDLFSQFGKLLSVKVMKDNNGHSRGFGFVN 237
Query: 156 MDYKHNADKAKAKLDGHVLKGRSLKI--------------------------RFAPINAA 189
+ A KA ++G + GR L + R+ +N
Sbjct: 238 FEKHEEAQKAVMDMNGKEVSGRQLYVGRAQKRVERQNELKRKFEQMKQDRLNRYQGVN-- 295
Query: 190 IKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ VKNL + +E L F +G I A V+ E G+SK G V F+ A +A+
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMT-EGGHSKGFGFVCFSSPEEATKAV 350
>gi|397478151|ref|XP_003810419.1| PREDICTED: polyadenylate-binding protein 5-like [Pan paniscus]
Length = 382
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 73/164 (44%), Gaps = 30/164 (18%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKA 165
A +++ NIG DI + + ELF YG T+ + + K K FGF+R + A KA
Sbjct: 196 ATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKA 255
Query: 166 KAKLDGHVLKGRSLKI--------RFA----------------PINAAIKVKNLTSCVTN 201
L G + G+ L + R A P I +KNL + +
Sbjct: 256 VLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIND 315
Query: 202 ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
E L+ F FG I RA V++ E G K G+V F+ A++A+
Sbjct: 316 EKLKEEFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEASKAV 358
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 68/142 (47%), Gaps = 15/142 (10%)
Query: 118 LGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKLDG 171
+G++ D+TE+ + + F+P G + I ++ + +G++ + +A+ A ++
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 172 HVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIVDE 223
++ G+ ++ ++ + ++ +KNL + N L F FG+I V+ D+
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 224 RGNSKCEGIVEFARKPAAAQAL 245
G SK V F AA +A+
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAI 162
>gi|12836631|dbj|BAB23742.1| unnamed protein product [Mus musculus]
Length = 168
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 76/146 (52%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
>gi|61175237|ref|NP_001012995.1| polyadenylate-binding protein 1-like 2 [Homo sapiens]
gi|109948285|ref|NP_001035971.1| polyadenylate-binding protein 1-like 2 [Homo sapiens]
gi|402910552|ref|XP_003917938.1| PREDICTED: polyadenylate-binding protein 1-like 2 [Papio anubis]
gi|426396426|ref|XP_004064444.1| PREDICTED: polyadenylate-binding protein 1-like 2 [Gorilla gorilla
gorilla]
gi|74755614|sp|Q5JQF8.1|PAP1M_HUMAN RecName: Full=Polyadenylate-binding protein 1-like 2; AltName:
Full=RNA-binding motif protein 32; AltName:
Full=RNA-binding protein 32
gi|119619077|gb|EAW98671.1| hCG1811470 [Homo sapiens]
gi|187951483|gb|AAI36493.1| PABPC1L2A protein [Homo sapiens]
gi|261861056|dbj|BAI47050.1| poly(A) binding protein, cytoplasmic 1-like 2A [synthetic
construct]
gi|355704922|gb|EHH30847.1| RNA-binding protein 32 [Macaca mulatta]
gi|355767263|gb|EHH62597.1| RNA-binding protein 32 [Macaca fascicularis]
gi|380784435|gb|AFE64093.1| polyadenylate-binding protein 1-like 2 [Macaca mulatta]
Length = 200
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 75/144 (52%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ ++TE + E F P G + I ++K+ G+ ++Y+ D +A L
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + +++ +KNL + N+ L F FG+I V
Sbjct: 64 NFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVAC 123
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE+G K G V F ++ +A +A+
Sbjct: 124 DEKG-PKGYGFVHFQKQESAERAI 146
>gi|449268274|gb|EMC79144.1| Ribonucleoprotein PTB-binding 2, partial [Columba livia]
Length = 562
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 129 DIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINA 188
+I +LFK Y E + ++++ K F+ + A A K + L+G+ + ++ P +A
Sbjct: 1 EIHDLFKDY-EIKYCYVDRNKRTAFVTLLNGEQAQSAIQKFHQYSLRGKEISVQLQPTDA 59
Query: 189 AIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQA 244
+ + NL T E E +G++ER ++ +E G+SK G VE+ +K +AA+A
Sbjct: 60 LLCITNLPISFTLEEFEELVRAYGNVERCFLVYNEVTGHSKGYGFVEYMKKDSAAKA 116
>gi|348502707|ref|XP_003438909.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Oreochromis niloticus]
Length = 623
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 75/145 (51%), Gaps = 17/145 (11%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKAKLDG 171
LY+G++ D+TE + + F P G + + ++ + G+ ++++ AD A+ LD
Sbjct: 13 LYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYVNFQQPAD-AECALDT 71
Query: 172 H---VLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVI 220
V+KGR ++I ++ + ++ +KN+ + N+ L F FG+I V+
Sbjct: 72 MNYDVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVV 131
Query: 221 VDERGNSKCEGIVEFARKPAAAQAL 245
DE+G SK G V F + AA +A+
Sbjct: 132 CDEKG-SKGYGFVHFETQEAANRAI 155
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 75/172 (43%), Gaps = 37/172 (21%)
Query: 105 NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYK 159
+K +KF N +Y+ N G D T+ + E+F +G T + + K++ FGF+ +
Sbjct: 185 SKAMKFTN---VYIKNFGEDFTDEKLKEVFSAFGRTLSVRVMKDEKGRSRGFGFVNYAHH 241
Query: 160 HNADKAKAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVK 193
+A KA +++G + G+ L + R+ +N + VK
Sbjct: 242 EDAQKAVNEMNGKEINGKILYVGRAQKRLERQGELKRKFDQIKQDRIQRYQGVN--LYVK 299
Query: 194 NLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
NL + +E L F +G I A V+ D SK G V F+ A +A+
Sbjct: 300 NLDDSIDDERLRKEFAPYGTITSAKVMTDG-SQSKGFGFVCFSSPEEATKAV 350
>gi|406988412|gb|EKE08420.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 123
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQEL------FINKEKMFGFIRMDYKHNADKAK 166
N +LY+GN+ D +E+ + ELF YGE QE+ F + + F F+RM A KAK
Sbjct: 5 NQKLYVGNLNFDASEDQVRELFGSYGEVQEVKIIMDRFSGRSRGFAFVRMATADEAGKAK 64
Query: 167 AKLDGHVLKGRSLKIRFA 184
L G +G+SL I +A
Sbjct: 65 DALSGQPFQGKSLVIDWA 82
>gi|449494063|ref|XP_004159436.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 69/160 (43%), Gaps = 30/160 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N+ T++D+ LF P+G + K K FGF+ +A A KLD
Sbjct: 215 VYVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSKCFGFVNFQNTDSAAAAVEKLD 274
Query: 171 GHVL-------KGRSL-----------------KIRFAPINAA-IKVKNLTSCVTNELLE 205
G VL GR+ K RF + A + +KNL + +E L+
Sbjct: 275 GTVLGDDKTLYVGRAQRKAEREAELRAKFEQERKSRFEKLQGANLYIKNLDDHIDDEKLK 334
Query: 206 LAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F +G I V++D+ G SK G V F+ A +AL
Sbjct: 335 ELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATKAL 374
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 18/162 (11%)
Query: 105 NKD--IKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMD 157
N+D I+ + +++ N+ I + + F +G + + K +GF++ +
Sbjct: 112 NRDPSIRKSGYANVFIKNLDLSIDNKALRDTFAAFGTVLSCKVAVDSNGQSKGYGFVQFE 171
Query: 158 YKHNADKAKAKLDGHVLKGRSLKI-RFAPINAAIK----------VKNLTSCVTNELLEL 206
+ +A+ + KL+G +L + + + F I+ VKNL T++ L+
Sbjct: 172 SEESAEISIEKLNGMLLNDKQVYVGHFIRHQERIRANGSQFTNVYVKNLPETTTDDDLKN 231
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
F G I AIV+ D G SKC G V F +AA A+ +
Sbjct: 232 LFAPHGTITSAIVMTDSNGKSKCFGFVNFQNTDSAAAAVEKL 273
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 67/150 (44%), Gaps = 14/150 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAK 166
+ LY+G++ + E ++ELF + + + +++ + ++ +A A
Sbjct: 34 SSSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVNAM 93
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
L+ + G+ ++I + + +I+ +KNL + N+ L F FG +
Sbjct: 94 EHLNFTPVNGKPIRIMISNRDPSIRKSGYANVFIKNLDLSIDNKALRDTFAAFGTVLSCK 153
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V VD G SK G V+F + +A ++ +
Sbjct: 154 VAVDSNGQSKGYGFVQFESEESAEISIEKL 183
>gi|70947056|ref|XP_743180.1| polyadenylate-binding protein [Plasmodium chabaudi chabaudi]
gi|56522555|emb|CAH74716.1| polyadenylate-binding protein, putative [Plasmodium chabaudi
chabaudi]
Length = 629
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 23/172 (13%)
Query: 91 IQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-- 148
I T +PPS F+ LY+G++ D+TE + E+F G + + ++
Sbjct: 2 IANSTNIMPPS--------FST-ASLYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSV 52
Query: 149 --KMFGFIRMDYKHNADKAKA--KLDGHVLKGRSLKIRFAPINAAIK--------VKNLT 196
K G+ ++Y + AD +A L+ +KG+ ++ ++ + +++ VKNL
Sbjct: 53 TRKSLGYAYVNYHNLADAERALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLD 112
Query: 197 SCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
+ N+ L F +FG+I V DE G SK G V + + +A +A+ +
Sbjct: 113 KTIDNKALFDTFSMFGNILSCKVATDEFGKSKNYGFVHYEDEESAKEAIEKV 164
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 101 SEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI---NKEKMFGFIRMD 157
SE D KF N LY+ N +TE + ELF PYGE + + NK + F FI
Sbjct: 183 SERATNDTKFTN---LYVKNFPDTVTEAHLKELFSPYGEITSMIVKSDNKNRKFCFINYS 239
Query: 158 YKHNADKAKAKLDG 171
+A A L+G
Sbjct: 240 DADSARNAMENLNG 253
>gi|403295651|ref|XP_003938748.1| PREDICTED: polyadenylate-binding protein 5 [Saimiri boliviensis
boliviensis]
Length = 382
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 72/164 (43%), Gaps = 30/164 (18%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKA 165
A +++ NIG DI + + ELF YG T+ + + K K FGF+R + A KA
Sbjct: 196 ATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKA 255
Query: 166 KAKLDGHVLKGRSLKI--------RFA----------------PINAAIKVKNLTSCVTN 201
L G + G+ L + R A P I +KNL + +
Sbjct: 256 VLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIND 315
Query: 202 ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
E L+ F FG I RA V++ E G K G+V F+ A +A+
Sbjct: 316 EKLKEEFSSFGSISRAKVML-EVGQGKGFGVVCFSSFEEATKAV 358
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 68/142 (47%), Gaps = 15/142 (10%)
Query: 118 LGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKLDG 171
+G++ D+TE+ + + F+P G + I ++ + +G++ + +A+ A ++
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 172 HVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIVDE 223
++ G+ ++ ++ + ++ +KNL + N L F FG+I V+ D+
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 224 RGNSKCEGIVEFARKPAAAQAL 245
G SK V F AA +A+
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAI 162
>gi|307103841|gb|EFN52098.1| hypothetical protein CHLNCDRAFT_59028 [Chlorella variabilis]
Length = 634
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 17/154 (11%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA 167
+N LY+G++ D+TE + E+F G + + ++ + G+ ++Y D A A
Sbjct: 36 HNSSLYVGDLDRDVTEAQLFEVFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSVLDPAAA 95
Query: 168 -----KLDGHVLKGRSLKIRFAPINAA--------IKVKNLTSCVTNELLELAFGVFGDI 214
+L+ L GR ++I ++ + A I +KNL V N+ L F FG+I
Sbjct: 96 ERALDQLNYTPLVGRPMRIMWSHRDPAFRKSGVGNIFIKNLDRSVDNKALHDTFSAFGNI 155
Query: 215 ERAIVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V D +G SK G V F + +A A+ +
Sbjct: 156 LSCKVAQDLKGESKGYGFVHFEKDESARLAIEKV 189
Score = 45.1 bits (105), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 71/170 (41%), Gaps = 32/170 (18%)
Query: 105 NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYK 159
+ ++KF N +++ N+ ++++++ +F +G I K K FGFI +
Sbjct: 213 DSEVKFTN---VFVKNLDEAVSDDEVKAMFAEHGTVNSCIIMRDDEGKSKGFGFINFEEP 269
Query: 160 HNADKAKAKLDGHVLKGRSLKI--------RFAPINAA----------------IKVKNL 195
A A L+G + + L + R A + A + VKNL
Sbjct: 270 EQAASAVQALNGKDVNCKELYVGRAQKKAEREAMLRAKFEELRSERIAKYQGMNLYVKNL 329
Query: 196 TSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ +E L F FG I A V+VD G S+ G V +A A +A+
Sbjct: 330 HDDIDDETLRTEFSQFGTITSAKVMVDSAGKSRGFGFVCYASPEEATRAV 379
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 68/149 (45%), Gaps = 20/149 (13%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLD 170
+++ N+ + + + F +G + ++ K +GF+ + +A A K++
Sbjct: 131 IFIKNLDRSVDNKALHDTFSAFGNILSCKVAQDLKGESKGYGFVHFEKDESARLAIEKVN 190
Query: 171 GHVLKGRSLKIRFAPI--------NAAIK-----VKNLTSCVTNELLELAFGVFGDIERA 217
G +L+G+ K+ P ++ +K VKNL V+++ ++ F G +
Sbjct: 191 GMLLEGK--KVYVGPFLRRSERSSDSEVKFTNVFVKNLDEAVSDDEVKAMFAEHGTVNSC 248
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALR 246
I++ D+ G SK G + F AA A++
Sbjct: 249 IIMRDDEGKSKGFGFINFEEPEQAASAVQ 277
>gi|126342190|ref|XP_001379497.1| PREDICTED: polyadenylate-binding protein 1 [Monodelphis domestica]
Length = 669
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 72/146 (49%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKL 169
LY+G++ D+TE+ + E F P G + + ++ + + ++ ++ +A+ A +
Sbjct: 47 LYVGDLHHDVTESMLYEKFSPAGPILSIRVCRDSVTQHSLGYAYVNFQHRAHAEWVLATM 106
Query: 170 DGHVLKGRSLKIRFAPINAA--------IKVKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG ++I ++ + + VKNL + N+ L F FG I VI
Sbjct: 107 NLDVIKGNPIRIMWSQRDPGQRKRGVGNVFVKNLEKSIDNKALYDTFSTFGRILSCKVIS 166
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + +A +A+ +
Sbjct: 167 DENG-SKGYGFVHFETQESAGKAIEK 191
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 34/170 (20%)
Query: 108 IKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNA 162
+K + +Y+ N G ++ + + E+F YG T + + + K FGF+ +A
Sbjct: 219 VKAKDYTNIYIKNFGENMDDQRLTEIFAKYGPTLSVKVMTDDCGRSKGFGFVSFQSHEDA 278
Query: 163 DKAKAKLDGHVLKGRSL--------------------------KIRFAPINAAIKVKNLT 196
A ++G L G+ + IR+ +N + +KNL
Sbjct: 279 QAAVDDMNGKQLNGKQIYVGRAQKKRERQTELKRHFEQIKQNQHIRYQGVN--LYIKNLD 336
Query: 197 SCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALR 246
+ +E L F FG I A V++ E G SK G V F+ AA+A R
Sbjct: 337 DTINDEHLRKEFSPFGTITSAKVMM-ENGRSKGFGFVCFSSSKDAAKASR 385
>gi|403417917|emb|CCM04617.1| predicted protein [Fibroporia radiculosa]
Length = 671
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 71/145 (48%), Gaps = 14/145 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KAKAKL 169
LY+G + +TE + E+F G + + ++ + G+ ++Y + AD +A +L
Sbjct: 46 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 105
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ +KGR+ +I ++ + A++ +KNL + N+ L F FG++ V
Sbjct: 106 NYSSIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVAT 165
Query: 222 DERGNSKCEGIVEFARKPAAAQALR 246
DE G SK G V + AA A++
Sbjct: 166 DEHGRSKGYGFVHYETAEAAETAIK 190
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 68/166 (40%), Gaps = 33/166 (19%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKA 165
A +Y+ N ++TE + + LF+ +G I ++ + FGF+ + A KA
Sbjct: 222 AQFTNIYVKNFDPEVTEEEFMALFQQFGSVTSAVIQRDDEGRSRGFGFVNFEVHDEAQKA 281
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
L KG+ L + +F +N + +KNL +
Sbjct: 282 VEGLHDLDFKGKKLFVSRAQKKAEREQELRQSYEQAKMEKMSKFQGVN--LYIKNLEDDL 339
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
++ L F FG I A V+ DE+G SK G V F+ A +A+
Sbjct: 340 DDDRLRTEFEPFGSITSAKVMRDEKGTSKGFGFVCFSSPDEATKAV 385
>gi|156360993|ref|XP_001625306.1| predicted protein [Nematostella vectensis]
gi|156212133|gb|EDO33206.1| predicted protein [Nematostella vectensis]
Length = 584
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKL 169
LY+G++ D+TE + E F G + + ++ + + ++ +A+KA +
Sbjct: 15 LYVGDLAPDVTEAMLYEKFSTAGSVLSIRVCRDLVTRRSLGYAYVNFQQPGHAEKALDTM 74
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ +KGR +I + + +++ +KNL + N+ L F FG+I +
Sbjct: 75 NFDPIKGRPCRIMWQQRDPSLRKSGVGNIFIKNLDKSIDNKSLYDTFSAFGNILSCKIAQ 134
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE GN K G V F + AA +A+ R
Sbjct: 135 DELGNPKGYGFVHFETEDAALEAIARV 161
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 72/166 (43%), Gaps = 32/166 (19%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNAD 163
KF N +Y+ N G D+ + + E+ G+ L + K K FGF+ + A+
Sbjct: 192 KFTN---VYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFETPEEAE 248
Query: 164 KAKAKLDGHVLKGRSLKI--------RFAPINAAIK----------------VKNLTSCV 199
+A L+G + GR L R A + A I+ +KNL +
Sbjct: 249 EAVNVLNGKEIGGRRLWAGRAKKRAERAAEVKAEIEKKRQERINRFQGVNLYIKNLDDPI 308
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+E L F +G I A V+ D++GNSK G V F+ A +A+
Sbjct: 309 DDERLREEFSPYGTISSAKVMKDDKGNSKGFGFVCFSSPEEATKAV 354
>gi|148698928|gb|EDL30875.1| ribonucleoprotein, PTB-binding 2, isoform CRA_a [Mus musculus]
Length = 503
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 68/137 (49%), Gaps = 2/137 (1%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168
+ +N ++ + N+ D + ++ EL + Y E + ++++ K F+ + A A +
Sbjct: 97 ELSNRRKILVKNLPQDSSSQEVHELLQDY-ELKYCYVDRNKRTAFVTLLNGEQAQSAIQR 155
Query: 169 LDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGNS 227
+GR L ++ P +A + + NL T E E +G+IER ++ E G+S
Sbjct: 156 FHQFSFRGRELTVQLQPTDALLCITNLPISFTLEEFEELVRAYGNIERCFLVYSEVTGHS 215
Query: 228 KCEGIVEFARKPAAAQA 244
K G VE+ +K AA+A
Sbjct: 216 KGYGFVEYMKKDFAAKA 232
>gi|119596296|gb|EAW75890.1| hCG2019100, isoform CRA_d [Homo sapiens]
Length = 639
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 72/144 (50%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ +LKG+ ++I ++ + ++ +KNL + N+ L F FG+I V
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVAC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE G S+ G V F AA QA+
Sbjct: 133 DEHG-SRGFGFVHFETHEAAQQAI 155
Score = 42.4 bits (98), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 33/169 (19%)
Query: 106 KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKH 160
+ ++F N +Y+ N+ D+ E + +LF +G+ + + ++ + FGF+ +
Sbjct: 186 RALEFTN---IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHE 242
Query: 161 NADKAKAKLDGHVLKGR---------------SLKIRFAPIN---------AAIKVKNLT 196
A KA ++G + GR LK RF + + VKNL
Sbjct: 243 EAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLD 302
Query: 197 SCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ ++ L F +G I A V+ E G+SK G V F+ A +A+
Sbjct: 303 DSIDDDKLRKEFSPYGVITSAKVMT-EGGHSKGFGFVCFSSPEEATKAV 350
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + ++ FGF+ + A +A ++G
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNG 160
Query: 172 HVLKGRSLKI--------RFAPINA------AIKVKNLTSCVTNELLELAFGVFGDIERA 217
+L R + + R A + A I VKNL V + L+ F FG +
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G+S+C G V F + A +A+
Sbjct: 221 KVMRDNSGHSRCFGFVNFEKHEEAQKAV 248
>gi|449446375|ref|XP_004140947.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 69/160 (43%), Gaps = 30/160 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N+ T++D+ LF P+G + K K FGF+ +A A KLD
Sbjct: 215 VYVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSKCFGFVNFQNTDSAAAAVEKLD 274
Query: 171 GHVL-------KGRSL-----------------KIRFAPINAA-IKVKNLTSCVTNELLE 205
G VL GR+ K RF + A + +KNL + +E L+
Sbjct: 275 GTVLGDDKTLYVGRAQRKAEREAELKAKFEQERKSRFEKLQGANLYIKNLDDHIDDEKLK 334
Query: 206 LAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F +G I V++D+ G SK G V F+ A +AL
Sbjct: 335 ELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATKAL 374
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 18/162 (11%)
Query: 105 NKD--IKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMD 157
N+D I+ + +++ N+ I + + F +G + + K +GF++ +
Sbjct: 112 NRDPSIRKSGYANVFIKNLDLSIDNKALRDTFAAFGTVLSCKVAVDSNGQSKGYGFVQFE 171
Query: 158 YKHNADKAKAKLDGHVLKGRSLKI-RFAPINAAIK----------VKNLTSCVTNELLEL 206
+ +A+ + KL+G +L + + + F I+ VKNL T++ L+
Sbjct: 172 SEESAEISIEKLNGMLLNDKQVYVGHFIRHQERIRANGSQFTNVYVKNLPETTTDDDLKN 231
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
F G I AIV+ D G SKC G V F +AA A+ +
Sbjct: 232 LFAPHGTITSAIVMTDSNGKSKCFGFVNFQNTDSAAAAVEKL 273
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 67/150 (44%), Gaps = 14/150 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAK 166
+ LY+G++ + E ++ELF + + + +++ + ++ +A A
Sbjct: 34 SSSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVNAM 93
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
L+ + G+ ++I + + +I+ +KNL + N+ L F FG +
Sbjct: 94 EHLNFTPVNGKPIRIMISNRDPSIRKSGYANVFIKNLDLSIDNKALRDTFAAFGTVLSCK 153
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V VD G SK G V+F + +A ++ +
Sbjct: 154 VAVDSNGQSKGYGFVQFESEESAEISIEKL 183
>gi|197097448|ref|NP_001126434.1| polyadenylate-binding protein 5 [Pongo abelii]
gi|55731438|emb|CAH92432.1| hypothetical protein [Pongo abelii]
Length = 382
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 72/164 (43%), Gaps = 30/164 (18%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKA 165
A +++ NIG DI + + ELF YG T+ + + K K FGF+R + A KA
Sbjct: 196 ATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKA 255
Query: 166 KAKLDGHVLKGRSLKI--------RFA----------------PINAAIKVKNLTSCVTN 201
L G + G+ L + R A P I +KNL + +
Sbjct: 256 VLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIND 315
Query: 202 ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
E L+ F FG I RA V++ E G K G+V F+ A +A+
Sbjct: 316 EKLKEEFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAV 358
Score = 45.8 bits (107), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 68/142 (47%), Gaps = 15/142 (10%)
Query: 118 LGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKLDG 171
+G++ D+TE+ + + F+P G + I ++ + +G++ + +A+ A ++
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 172 HVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIVDE 223
++ G+ ++ ++ + ++ +KNL + N L F FGDI V+ D+
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGDILSCKVVCDD 141
Query: 224 RGNSKCEGIVEFARKPAAAQAL 245
G SK V F AA +A+
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAI 162
>gi|224085260|ref|XP_002307526.1| predicted protein [Populus trichocarpa]
gi|222856975|gb|EEE94522.1| predicted protein [Populus trichocarpa]
Length = 649
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAK 166
N LY+G++ ++ E + +LF + + + +++ + ++ +A A
Sbjct: 32 NSSLYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDASNAM 91
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
L+ L G++++I + + +++ +KNL + + N+ L+ F FG +
Sbjct: 92 ELLNFTPLNGKAIRIMVSHRDPSMRKSGHANVFIKNLDTSIDNKALQETFASFGSVLSCK 151
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V VD G SK G V+F + AA A+ R
Sbjct: 152 VAVDNNGQSKGYGFVQFENEEAAQSAINRL 181
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 71/158 (44%), Gaps = 17/158 (10%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKA 167
+ +++ N+ I + E F +G + + K +GF++ + + A A
Sbjct: 120 HANVFIKNLDTSIDNKALQETFASFGSVLSCKVAVDNNGQSKGYGFVQFENEEAAQSAIN 179
Query: 168 KLDGHVLKGRSLKI-RF-----------APINAAIKVKNLTSCVTNELLELAFGVFGDIE 215
+L+G ++ + + + RF +P + VKNL+ ++E L+ F +G I
Sbjct: 180 RLNGMLINDKEVFVGRFVRHQERIEATGSPKFTNVYVKNLSETTSDEDLKKFFSNYGAIT 239
Query: 216 RAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCF 253
AIV+ D+ G SK G V F +AA A+ + F
Sbjct: 240 SAIVMKDQSGKSKGFGFVNFQSPDSAAAAVEKLNGTTF 277
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 32/166 (19%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNAD 163
KF N +Y+ N+ ++ D+ + F YG + K+ K FGF+ +A
Sbjct: 210 KFTN---VYVKNLSETTSDEDLKKFFSNYGAITSAIVMKDQSGKSKGFGFVNFQSPDSAA 266
Query: 164 KAKAKLDGHVLK------GRS---------LKIRFA--------PINAA-IKVKNLTSCV 199
A KL+G GR+ LK RF + AA + +KNL +
Sbjct: 267 AAVEKLNGTTFNDKVWYVGRAQRKGEREAELKARFEQERNSRYEKLKAANLYLKNLDDKI 326
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+E L+ F FG I V++D++G SK G V F+ A++AL
Sbjct: 327 DDEKLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRAL 372
>gi|18201888|ref|NP_543022.1| polyadenylate-binding protein 5 [Homo sapiens]
gi|115392093|ref|NP_001065269.1| polyadenylate-binding protein 5 [Pan troglodytes]
gi|332239776|ref|XP_003269075.1| PREDICTED: polyadenylate-binding protein 5 [Nomascus leucogenys]
gi|426396593|ref|XP_004064521.1| PREDICTED: polyadenylate-binding protein 5-like [Gorilla gorilla
gorilla]
gi|28201851|sp|Q96DU9.1|PABP5_HUMAN RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502886|sp|P60047.1|PABP5_GORGO RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502887|sp|P60048.1|PABP5_HYLLA RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502888|sp|P60049.1|PABP5_PANTR RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502889|sp|P60050.1|PABP5_PONPY RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|14571705|emb|CAC42817.1| Poly(A)-binding protein cytoplasmic 5 [Gorilla gorilla]
gi|14571711|emb|CAC42818.1| Poly(A)-binding protein cytoplasmic 5 [Hylobates lar]
gi|14571756|emb|CAC42822.1| Poly(A)-binding protein cytoplasmic 5 [Pongo pygmaeus]
gi|14571764|emb|CAC42823.1| poly(A)-binding protein cytoplasmic 5 [Pan troglodytes]
gi|14572616|emb|CAC42826.1| Poly(A)-binding protein cytoplasmic 5 [Homo sapiens]
gi|38649270|gb|AAH63113.1| Poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
gi|119623181|gb|EAX02776.1| poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
gi|158261233|dbj|BAF82794.1| unnamed protein product [Homo sapiens]
gi|208968659|dbj|BAG74168.1| poly(A) binding protein, cytoplasmic 5 [synthetic construct]
gi|312151110|gb|ADQ32067.1| poly(A) binding protein, cytoplasmic 5 [synthetic construct]
gi|410208314|gb|JAA01376.1| poly(A) binding protein, cytoplasmic 5 [Pan troglodytes]
gi|410305648|gb|JAA31424.1| poly(A) binding protein, cytoplasmic 5 [Pan troglodytes]
Length = 382
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 72/164 (43%), Gaps = 30/164 (18%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKA 165
A +++ NIG DI + + ELF YG T+ + + K K FGF+R + A KA
Sbjct: 196 ATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKA 255
Query: 166 KAKLDGHVLKGRSLKI--------RFA----------------PINAAIKVKNLTSCVTN 201
L G + G+ L + R A P I +KNL + +
Sbjct: 256 VLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIND 315
Query: 202 ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
E L+ F FG I RA V++ E G K G+V F+ A +A+
Sbjct: 316 EKLKEEFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAV 358
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 68/142 (47%), Gaps = 15/142 (10%)
Query: 118 LGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKLDG 171
+G++ D+TE+ + + F+P G + I ++ + +G++ + +A+ A ++
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 172 HVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIVDE 223
++ G+ ++ ++ + ++ +KNL + N L F FG+I V+ D+
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 224 RGNSKCEGIVEFARKPAAAQAL 245
G SK V F AA +A+
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAI 162
>gi|354484923|ref|XP_003504635.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 672
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 87/182 (47%), Gaps = 21/182 (11%)
Query: 84 FTEKIMAIQGPTLDL---PPSEPQNKDIKFANNC---RLYLGNIGGDITENDIIELFKPY 137
T I A QGP L+L P N C LY+G++ D+TE + E+F P
Sbjct: 38 LTYGIPARQGPVLELLGDPFLGALNTMDPGGQACALSSLYVGDLHPDVTEAMLYEMFSPI 97
Query: 138 GETQELFINKE----KMFGFIRMDYKHNADKAKA--KLDGHVLKGRSLKIRFAPINAAIK 191
G + + ++ + G+ ++++ AD +A ++ ++KG+ ++I ++ + ++
Sbjct: 98 GTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEMIKGQPIRIMWSHRDPGLR 157
Query: 192 --------VKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQ 243
+KNL + + N+ L F FG I + V+ +E G S+ G V F AA +
Sbjct: 158 KSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQK 216
Query: 244 AL 245
A+
Sbjct: 217 AI 218
>gi|350408508|ref|XP_003488428.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
impatiens]
Length = 601
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 74/147 (50%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ DITE + E F G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++KGR ++I ++ + +++ +KNL + N+ + F FG+I V
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQ 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE G SK G V F + AA +++ R
Sbjct: 133 DESGVSKGYGFVHFETEEAANKSIDRV 159
Score = 41.6 bits (96), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 102 EPQNKDIKFANNCRLY-LGNIGGDITENDIIELFKPYGE--TQELFIN---KEKMFGFIR 155
E NK I N L N G D+T++ + ++F+ YG + ++ I K + FGF+
Sbjct: 150 EAANKSIDRVNGMLLNGKKNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFVA 209
Query: 156 MDYKHNADKAKAKLDG-HVLKGRSLKI--------------------------RFAPINA 188
+ A++A +L+G V +G+ + + R+ +N
Sbjct: 210 FEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN- 268
Query: 189 AIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ VKNL + +E L F FG I A V+++E G SK G V F+ A +A+
Sbjct: 269 -LYVKNLDDSIDDERLRKEFAPFGTITSAKVMMEE-GRSKGFGFVCFSAPEEATKAV 323
>gi|124806145|ref|XP_001350640.1| polyadenylate-binding protein, putative [Plasmodium falciparum 3D7]
gi|23496765|gb|AAN36320.1|AE014847_47 polyadenylate-binding protein, putative [Plasmodium falciparum 3D7]
gi|119352249|gb|ABL63812.1| polyadenylate-binding protein [Plasmodium falciparum]
Length = 875
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 74/147 (50%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E+F G + + ++ K G+ ++Y + AD +A L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ +KG+ ++ ++ + +++ VKNL + N+ L F +FG+I V
Sbjct: 78 NYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVAT 137
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE G SK G V + + +A +A+ +
Sbjct: 138 DEFGKSKSYGFVHYEDEESAKEAIEKV 164
Score = 42.7 bits (99), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 101 SEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI---NKEKMFGFIRMD 157
SE D KF N LY+ N +TE + +LF PYGE + + NK + F FI
Sbjct: 183 SERATNDTKFTN---LYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDNKNRKFCFINYA 239
Query: 158 YKHNADKAKAKLDG 171
+A A L+G
Sbjct: 240 DAESAKNAMDNLNG 253
>gi|395856984|ref|XP_003800896.1| PREDICTED: polyadenylate-binding protein 5 [Otolemur garnettii]
Length = 382
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 73/164 (44%), Gaps = 30/164 (18%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKA 165
A +++ N+G D+ + + ELF YG T+ + + K K FGF+R + A KA
Sbjct: 196 ATFTNVFVKNLGDDMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKA 255
Query: 166 KAKLDGHVLKGRSLKI--------RFA----------------PINAAIKVKNLTSCVTN 201
L G + G+ L + R A P I +KNL + +
Sbjct: 256 VLDLHGKSIDGKILYVGRAQKKIERLAELRRRFERLRLKDKSRPPGVPIYIKNLDETIDD 315
Query: 202 ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
E L+ F FG I RA V++ E G K G+V F+ AA+A+
Sbjct: 316 EKLKEEFSPFGSISRAKVMM-EVGQGKGFGVVCFSSFEEAAKAV 358
Score = 45.4 bits (106), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 68/142 (47%), Gaps = 15/142 (10%)
Query: 118 LGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKLDG 171
+G++ D+TE+ + + F+P G + I ++ + +G++ + +A+ A ++
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 172 HVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIVDE 223
+L G+ ++ ++ + ++ +KNL + N L F FG+I V+ D+
Sbjct: 82 DLLNGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 224 RGNSKCEGIVEFARKPAAAQAL 245
G SK V F AA +A+
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAI 162
>gi|73992493|ref|XP_534430.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Canis lupus
familiaris]
Length = 611
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 73/144 (50%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + ++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
D+ G S+ G V F AA QA+
Sbjct: 133 DDHG-SRGFGFVHFETHEAAQQAI 155
Score = 39.7 bits (91), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 37/171 (21%)
Query: 106 KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKH 160
+ ++F N +Y+ N+ D+ E + +LF +G+ + + ++ FGF+
Sbjct: 186 RAMEFTN---IYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHE 242
Query: 161 NADKAKAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKN 194
A KA ++G + GR L + R+ +N + VKN
Sbjct: 243 EAQKAVMDMNGKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGVN--LYVKN 300
Query: 195 LTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
L + +E L F +G I A V+ E G+SK G V F+ A +A+
Sbjct: 301 LDDSIDDEKLRKEFSPYGVITSAKVMT-EGGHSKGFGFVCFSSPEEATKAV 350
>gi|113461967|ref|NP_001038193.1| polyadenylate-binding protein 5 [Macaca mulatta]
gi|402910717|ref|XP_003918003.1| PREDICTED: polyadenylate-binding protein 5 [Papio anubis]
gi|50400917|sp|Q7JGR2.1|PABP5_MACMU RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|14571725|emb|CAC42819.1| Poly(A)-binding protein cytoplasmic 5 [Macaca mulatta]
gi|14571737|emb|CAC42821.1| Poly(A)-binding protein cytoplasmic 5 [Miopithecus talapoin]
gi|90082100|dbj|BAE90331.1| unnamed protein product [Macaca fascicularis]
gi|355704969|gb|EHH30894.1| Polyadenylate-binding protein 5 [Macaca mulatta]
gi|355757521|gb|EHH61046.1| Polyadenylate-binding protein 5 [Macaca fascicularis]
Length = 382
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 72/164 (43%), Gaps = 30/164 (18%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKA 165
A +++ NIG DI + + ELF YG T+ + + K K FGF+R + A KA
Sbjct: 196 ATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKA 255
Query: 166 KAKLDGHVLKGRSLKI--------RFA----------------PINAAIKVKNLTSCVTN 201
L G + G+ L + R A P I +KNL + +
Sbjct: 256 VLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIND 315
Query: 202 ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
E L+ F FG I RA V++ E G K G+V F+ A +A+
Sbjct: 316 EKLKEEFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAV 358
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 68/142 (47%), Gaps = 15/142 (10%)
Query: 118 LGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKLDG 171
+G++ D+TE+ + + F+P G + I ++ + +G++ + +A+ A ++
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 172 HVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIVDE 223
++ G+ ++ ++ + ++ +KNL + N L F FG+I V+ D+
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 224 RGNSKCEGIVEFARKPAAAQAL 245
G SK V F AA +A+
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAI 162
>gi|340719922|ref|XP_003398393.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
terrestris]
Length = 621
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 74/147 (50%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ DITE + E F G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++KGR ++I ++ + +++ +KNL + N+ + F FG+I V
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQ 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE G SK G V F + AA +++ R
Sbjct: 133 DESGVSKGYGFVHFETEEAANKSIDRV 159
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 35/162 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYG--ETQELFIN---KEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+T++ + E+F+ YG + ++ I K + FGF+ + A++A +L+
Sbjct: 194 VYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELN 253
Query: 171 G-HVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNEL 203
G V +G+ + + R+ +N + VKNL + +E
Sbjct: 254 GKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN--LYVKNLDDSIDDER 311
Query: 204 LELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
L F FG I A V+++E G SK G V F+ A +A+
Sbjct: 312 LRKEFAPFGTITSAKVMMEE-GRSKGFGFVCFSAPEEATKAV 352
>gi|328782034|ref|XP_396057.4| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Apis
mellifera]
Length = 601
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 74/147 (50%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ DITE + E F G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++KGR ++I ++ + +++ +KNL + N+ + F FG+I V
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQ 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE G SK G V F + AA +++ R
Sbjct: 133 DESGVSKGYGFVHFETEEAANKSIDRV 159
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 102 EPQNKDIKFANNCRLY-LGNIGGDITENDIIELFKPYGE--TQELFIN---KEKMFGFIR 155
E NK I N L N G D+T++ + E+F+ YG + ++ I K + FGF+
Sbjct: 150 EAANKSIDRVNGMLLNGKKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVA 209
Query: 156 MDYKHNADKAKAKLDG-HVLKGRSLKI--------------------------RFAPINA 188
+ A++A +L+G V +G+ + + R+ +N
Sbjct: 210 FEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN- 268
Query: 189 AIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ VKNL + +E L F FG I A V+++E G SK G V F+ A +A+
Sbjct: 269 -LYVKNLDDSIDDERLRKEFAPFGTITSAKVMMEE-GRSKGFGFVCFSAPEEATKAV 323
>gi|413918857|gb|AFW58789.1| hypothetical protein ZEAMMB73_983608 [Zea mays]
Length = 412
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 87/179 (48%), Gaps = 18/179 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ G ++++ + ELF G+ + + ++ + G+ ++Y + D A+A L
Sbjct: 36 LYVGDLEGAVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNYSNPLDAARALEVL 95
Query: 170 DGHVLKGRSLKIRFA---PI-----NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ L + +++ ++ P +A I +KNL + N+ L F FG I V V
Sbjct: 96 NFAALNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHETFSSFGTILSCKVAV 155
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERT 280
DE G SK G V++ ++ AA A++ G + +PV V P E D ++T
Sbjct: 156 DEAGQSKGFGFVQYDKEEAAQNAIKSL-NGMLI---NDKPVFVGPFVRKQERDHSFDKT 210
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 25/155 (16%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKA 167
+ +++ N+ I + E F +G + + K FGF++ D + A A
Sbjct: 121 SANIFIKNLDKTIDNKTLHETFSSFGTILSCKVAVDEAGQSKGFGFVQYDKEEAAQNAIK 180
Query: 168 KLDGHVLKGRSL----------------KIRFAPINAAIKVKNLTSCVTNELLELAFGVF 211
L+G ++ + + K +F + VKNL+ T E L FG +
Sbjct: 181 SLNGMLINDKPVFVGPFVRKQERDHSFDKTKFN----NVFVKNLSESTTKEDLLKIFGEY 236
Query: 212 GDIERAIVIVDERGNSKCEGIVEFARKPAAAQALR 246
GDI A+V++ G S+C G + F AA+ A++
Sbjct: 237 GDITSAVVMIGMDGKSRCFGFINFENPDAASHAVQ 271
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 32/166 (19%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNAD 163
KF N +++ N+ T+ D++++F YG+ + K + FGFI + A
Sbjct: 211 KFNN---VFVKNLSESTTKEDLLKIFGEYGDITSAVVMIGMDGKSRCFGFINFENPDAAS 267
Query: 164 KAKAKLDGHVLK------GRS---------LKIRF--APINAAIK-------VKNLTSCV 199
A +L+G + GR+ LK RF + +AA K +KNL +
Sbjct: 268 HAVQELNGKKINDKEWYVGRAQKKSEREMELKRRFEQSLKDAADKYQGLNLYLKNLDDSI 327
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
++ L F FG I V+ D+ G SK G V F+ + A+QAL
Sbjct: 328 GDDQLCELFSNFGKITSYKVMRDQNGLSKGSGFVAFSTREEASQAL 373
>gi|291407988|ref|XP_002720199.1| PREDICTED: poly(A) binding protein, cytoplasmic 5 [Oryctolagus
cuniculus]
Length = 382
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 73/164 (44%), Gaps = 30/164 (18%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKA 165
A +++ N G D+ + + ELF YG T+ + + K K FGF+R + A KA
Sbjct: 196 ATFTNVFVKNFGDDMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKA 255
Query: 166 KAKLDGHVLKGRSLKI--------RFA----------------PINAAIKVKNLTSCVTN 201
L G + G+ L + R A P I +KNL +++
Sbjct: 256 VLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDESISD 315
Query: 202 ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
E L+ F FG I RA V++ E G+ K G+V F+ A +A+
Sbjct: 316 EKLKEEFSSFGSISRAKVMM-EVGHGKGFGVVCFSSFEEATKAV 358
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 68/142 (47%), Gaps = 15/142 (10%)
Query: 118 LGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKLDG 171
+G++ D+TE+ + + F+P G + I ++ + +G++ + +A+ A ++
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 172 HVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIVDE 223
++ G+ ++ ++ + ++ +KNL + N L F FG+I V+ D+
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVSDD 141
Query: 224 RGNSKCEGIVEFARKPAAAQAL 245
G SK V F AA +A+
Sbjct: 142 HG-SKGYAYVHFDSLAAANRAI 162
>gi|453087889|gb|EMF15930.1| RRM_1-domain-containing protein [Mycosphaerella populorum SO2202]
Length = 486
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 114 CRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHV 173
+Y+GN+ T+ND++ LF+ +G E ++ F FI+MD NA A +L G+
Sbjct: 299 TTVYVGNLTPYTTQNDLVPLFQNFGYVTETRFQSDRGFAFIKMDTHENAANAICQLSGYQ 358
Query: 174 LKGRSLKIRF 183
+ GR LK +
Sbjct: 359 VNGRPLKCSW 368
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 73/153 (47%), Gaps = 19/153 (12%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMF-------GFIRMDYKHNADK 164
N LY+G + +TE+ + ++F+ G Q + I +K F GF+ D A++
Sbjct: 79 NKRALYVGGLDPRVTEDVLKQIFETTGHVQSVKIIPDKNFQSKGYNYGFVEYDDPGAAER 138
Query: 165 AKAKLDGHVLKGRSLKIRFA-PINAAIK----------VKNLTSCVTNELLELAFGVFGD 213
A L+G + + +++ +A N + K V +L++ V +E+L AF FG
Sbjct: 139 AMQTLNGRRVHQQEIRVNWAYQSNTSAKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGT 198
Query: 214 IERAIVIVDER-GNSKCEGIVEFARKPAAAQAL 245
+ A V+ D + G S+ G F + A +AL
Sbjct: 199 VSEARVMWDMKTGRSRGYGFAAFRDRGEAEKAL 231
>gi|357465579|ref|XP_003603074.1| Poly(A)-binding protein [Medicago truncatula]
gi|355492122|gb|AES73325.1| Poly(A)-binding protein [Medicago truncatula]
Length = 622
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 73/151 (48%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKA 165
LY+G++ D+T++ + +LF G+ + I ++ +G++ H+A KA
Sbjct: 22 TTTSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKA 81
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
L+ L + ++I ++ + +++ +KNL + ++ L F +FG+I
Sbjct: 82 MDVLNFTPLNNKPIRIMYSHRDPSVRKSGAANIFIKNLDRAIDHKALYDTFSIFGNILSC 141
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
+ +D G SK G V+F + +A A+ +
Sbjct: 142 KIAMDASGLSKGYGFVQFENEESAQSAIDKL 172
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 17/139 (12%)
Query: 114 CRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAK 168
+++ N+ I + + F +G I + K +GF++ + + +A A K
Sbjct: 112 ANIFIKNLDRAIDHKALYDTFSIFGNILSCKIAMDASGLSKGYGFVQFENEESAQSAIDK 171
Query: 169 LDGHVLKGRSLKI-RF--------APINAA---IKVKNLTSCVTNELLELAFGVFGDIER 216
L+G +L + + + F A NA + VKNL+ VT++ L+ FG +G I
Sbjct: 172 LNGMLLNDKPVYVGHFQRKQDRDNALSNAKFNNVYVKNLSESVTDDDLKNTFGEYGTITS 231
Query: 217 AIVIVDERGNSKCEGIVEF 235
A+V+ D G SKC G V F
Sbjct: 232 AVVMRDVDGKSKCFGFVNF 250
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 68/168 (40%), Gaps = 36/168 (21%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNAD 163
KF N +Y+ N+ +T++D+ F YG + K K FGF+ + A
Sbjct: 201 KFNN---VYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVDGKSKCFGFVNFENADAAA 257
Query: 164 KAKAKLDGHVLK------GRSLKI--------------------RFAPINAAIKVKNLTS 197
+A L+G G++LK +F A + +KNL
Sbjct: 258 EAVEALNGKKFDDKEWYVGKALKKYERELELKERHEQSMKETVDKF--YGANLYLKNLDD 315
Query: 198 CVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
VT+E L F FG + ++ D +G S+ G V F+ A +AL
Sbjct: 316 SVTDEKLSELFSEFGTVTSCKILRDPQGISRGSGFVAFSTPEEATRAL 363
>gi|429859146|gb|ELA33937.1| polyadenylate-binding protein [Colletotrichum gloeosporioides Nara
gc5]
Length = 688
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 28/144 (19%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGH 172
+ LY+G + +TE + ELF G + +A +L+
Sbjct: 59 SASLYVGELDPSVTEAMLFELFSQIGSVASI--------------------RALEELNYT 98
Query: 173 VLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIVDER 224
++KGR +I ++ + A++ +KNL + N+ L F FG+I V DE
Sbjct: 99 LIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDEN 158
Query: 225 GNSKCEGIVEFARKPAAAQALRRC 248
GNSK G V + AAAQA++
Sbjct: 159 GNSKGYGFVHYETDEAAAQAIKHV 182
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 66/149 (44%), Gaps = 19/149 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + + F +G + ++ K +GF+ + A +A ++
Sbjct: 124 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVN 183
Query: 171 GHVLKGRSLKI-----------RFAPINAA---IKVKNLTSCVTNELLELAFGVFGDIER 216
G +L + + + +F + A + VKN+ + VT++ F FGD+
Sbjct: 184 GMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNIANEVTDDEFRDLFAAFGDVTS 243
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ + D+ G S+ G V F AAA+A+
Sbjct: 244 SSLARDQEGKSRGFGFVNFTTHEAAAKAV 272
Score = 39.3 bits (90), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 57/143 (39%), Gaps = 33/143 (23%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKA 165
AN +Y+ NI ++T+++ +LF +G+ + K + FGF+ A KA
Sbjct: 212 ANFTNVYVKNIANEVTDDEFRDLFAAFGDVTSSSLARDQEGKSRGFGFVNFTTHEAAAKA 271
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
L+ +G+ L + ++ +N + +KNL V
Sbjct: 272 VEDLNNKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVN--LYIKNLDDEV 329
Query: 200 TNELLELAFGVFGDIERAIVIVD 222
+E L F FG I A V+ D
Sbjct: 330 DDEKLRTLFADFGPITSAKVMRD 352
>gi|350408506|ref|XP_003488427.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
impatiens]
Length = 621
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 74/147 (50%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ DITE + E F G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++KGR ++I ++ + +++ +KNL + N+ + F FG+I V
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQ 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE G SK G V F + AA +++ R
Sbjct: 133 DESGVSKGYGFVHFETEEAANKSIDRV 159
Score = 45.1 bits (105), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 35/162 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGE--TQELFIN---KEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+T++ + ++F+ YG + ++ I K + FGF+ + A++A +L+
Sbjct: 194 VYVKNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELN 253
Query: 171 G-HVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNEL 203
G V +G+ + + R+ +N + VKNL + +E
Sbjct: 254 GKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN--LYVKNLDDSIDDER 311
Query: 204 LELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
L F FG I A V+++E G SK G V F+ A +A+
Sbjct: 312 LRKEFAPFGTITSAKVMMEE-GRSKGFGFVCFSAPEEATKAV 352
>gi|328871935|gb|EGG20305.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 567
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 75/147 (51%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+T++ + E+F G L I ++ + + ++Y + AD +A L
Sbjct: 10 LYVGDLHQDVTDSQLFEIFNQVGPVANLRICRDTTTRRSLNYAYVNYHNPADAERALDTL 69
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++KG++ +I ++ + +++ +KNL V ++ L F FG+I V+
Sbjct: 70 NNTLVKGKACRIMWSQRDPSLRKSGVGNIFIKNLDKSVDHKALFDTFSAFGNILSCKVVT 129
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE SK G V + + +A +A+ +
Sbjct: 130 DETNVSKGFGFVHYESQDSADKAIMKV 156
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 58/138 (42%), Gaps = 20/138 (14%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+++ N+ + + + F +G + N K FGF+ + + +ADKA K++
Sbjct: 98 IFIKNLDKSVDHKALFDTFSAFGNILSCKVVTDETNVSKGFGFVHYESQDSADKAIMKVN 157
Query: 171 GHVLKGRSLKIRFAPINAA-------------IKVKNLTSCVTNELLELAFGVFGDIERA 217
G ++ + K+ P ++ + VKNL+ V E L +G I
Sbjct: 158 GMIINDQ--KVFVGPFKSSKERGQTQELKYTNVYVKNLSEDVNEEELRDLLVPYGKITNL 215
Query: 218 IVIVDERGNSKCEGIVEF 235
++ DE+ SK G F
Sbjct: 216 TIMSDEKSKSKGFGFANF 233
>gi|167519406|ref|XP_001744043.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778005|gb|EDQ91621.1| predicted protein [Monosiga brevicollis MX1]
Length = 563
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 14/147 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA- 167
N LY+G++ ++TE + E F G + + ++ + G+ ++Y+ +AD A
Sbjct: 7 NASLYVGDLHPEVTEATLYEFFSQMGSVISIRVCRDAVSRQSLGYAYVNYQQHADAKHAL 66
Query: 168 -KLDGHVLKGRSLKIRFAPINAA--------IKVKNLTSCVTNELLELAFGVFGDIERAI 218
+L+ + + +I +A N A I +KNL + N+ L F FG I
Sbjct: 67 EELNFEKIHDKPCRIMWAQRNPAARRSGAGNIFIKNLNKEIDNKALYDTFSAFGTILSCK 126
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQAL 245
V DE+G S+ G V F ++ A +A+
Sbjct: 127 VAADEKGESRGYGFVHFEKEEDAQKAI 153
Score = 39.3 bits (90), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 69/162 (42%), Gaps = 31/162 (19%)
Query: 116 LYLGNIGGDI-TENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKA---- 165
+Y+ N+ T +D+ +LF+ +G F+ +K + FGF+ + A+ A
Sbjct: 188 IYVKNLPDSYATNDDLKKLFEKFGTITSTFLAKDENDKSRGFGFVNFENSEAANAAVEAM 247
Query: 166 ---KAKLDGHVLKGRSLK--------------IRF----APINAAIKVKNLTSCVTNELL 204
+ + D + GR++K IR N+ + +K+L VT + L
Sbjct: 248 NEKEIETDRKLFVGRAMKKHERERELKRIHDKIRQERDEKNKNSNLYIKHLPEDVTEDAL 307
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALR 246
F FG I ++ D G+S+ G V F AA A++
Sbjct: 308 RDKFSKFGTITSLKIMTDNNGDSRGFGFVNFDSADEAAAAIQ 349
>gi|67517823|ref|XP_658695.1| hypothetical protein AN1091.2 [Aspergillus nidulans FGSC A4]
gi|40747053|gb|EAA66209.1| hypothetical protein AN1091.2 [Aspergillus nidulans FGSC A4]
Length = 892
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLD 170
A Y+GN+ T+NDI+ LF+ +G E + ++ F FI+MD NA A +L+
Sbjct: 306 AWQTTCYVGNLTPYTTQNDIVPLFQNFGYVIETRMQADRGFAFIKMDTHENAASAICQLN 365
Query: 171 GHVLKGRSLKIRF 183
G+ + GR LK +
Sbjct: 366 GYNVNGRPLKCSW 378
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 72/154 (46%), Gaps = 20/154 (12%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQEL--------FINKEKMFGFIRMDYKHNAD 163
N LY+G + +TE+ + ++F+ G + F +K +GF+ D A+
Sbjct: 88 NKRALYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNQFNSKGANYGFVEFDDPGAAE 147
Query: 164 KAKAKLDGHVLKGRSLKIRFA-PINAA----------IKVKNLTSCVTNELLELAFGVFG 212
+A L+G + +++ +A N A I V +L++ V +E+L AF FG
Sbjct: 148 RAMQTLNGRRIHQSEIRVNWAYQSNTANKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFG 207
Query: 213 DIERAIVIVDER-GNSKCEGIVEFARKPAAAQAL 245
+ A V+ D + G S+ G V F + A +AL
Sbjct: 208 SVSEARVMWDMKTGRSRGYGFVAFRERADAEKAL 241
>gi|340719920|ref|XP_003398392.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
terrestris]
Length = 609
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 74/147 (50%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ DITE + E F G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++KGR ++I ++ + +++ +KNL + N+ + F FG+I V
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQ 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE G SK G V F + AA +++ R
Sbjct: 133 DESGVSKGYGFVHFETEEAANKSIDRV 159
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 35/162 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYG--ETQELFIN---KEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+T++ + E+F+ YG + ++ I K + FGF+ + A++A +L+
Sbjct: 173 VYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELN 232
Query: 171 G-HVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNEL 203
G V +G+ + + R+ +N + VKNL + +E
Sbjct: 233 GKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN--LYVKNLDDSIDDER 290
Query: 204 LELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
L F FG I A V+++E G SK G V F+ A +A+
Sbjct: 291 LRKEFAPFGTITSAKVMMEE-GRSKGFGFVCFSAPEEATKAV 331
>gi|403223650|dbj|BAM41780.1| uncharacterized protein TOT_040000162 [Theileria orientalis strain
Shintoku]
Length = 416
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 83/200 (41%), Gaps = 35/200 (17%)
Query: 85 TEKIMAIQGPTLDLPPSEPQNKDIKF-------------------ANNCRLYLGNIGGDI 125
T A Q PT++ PPS + KF + + ++G + +
Sbjct: 74 TSSPPATQTPTIERPPST--GRKFKFRQFLHQFSVIASHLPNTLIDSTLKFFVGGLHPNT 131
Query: 126 TENDIIELFKPYGE---TQ---ELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSL 179
E ++ F YG+ TQ +L + + FGF+ + +HN+ D H + G+ +
Sbjct: 132 DETELSNYFAKYGQILSTQVMRDLTTGRHRGFGFVTLKVQHNS--MNVFKDSHTVTGKRV 189
Query: 180 KIRF------APINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIV 233
+R A + I V L+ + E+L+ F FG++++ ++ G S+ G +
Sbjct: 190 DVRAMQTDLAASLRKKIFVGGLSKALNEEMLDEYFSKFGEVDKVTIMRQLDGTSRGFGFI 249
Query: 234 EFARKPAAAQALRRCAEGCF 253
F + AA +LR +
Sbjct: 250 VFTTEEAATASLRNPTHFVY 269
>gi|340719918|ref|XP_003398391.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
terrestris]
Length = 630
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 74/147 (50%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ DITE + E F G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++KGR ++I ++ + +++ +KNL + N+ + F FG+I V
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQ 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE G SK G V F + AA +++ R
Sbjct: 133 DESGVSKGYGFVHFETEEAANKSIDRV 159
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 35/162 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYG--ETQELFIN---KEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+T++ + E+F+ YG + ++ I K + FGF+ + A++A +L+
Sbjct: 194 VYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELN 253
Query: 171 G-HVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNEL 203
G V +G+ + + R+ +N + VKNL + +E
Sbjct: 254 GKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN--LYVKNLDDSIDDER 311
Query: 204 LELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
L F FG I A V+++E G SK G V F+ A +A+
Sbjct: 312 LRKEFAPFGTITSAKVMMEE-GRSKGFGFVCFSAPEEATKAV 352
>gi|350408504|ref|XP_003488426.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
impatiens]
Length = 630
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 74/147 (50%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ DITE + E F G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++KGR ++I ++ + +++ +KNL + N+ + F FG+I V
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQ 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE G SK G V F + AA +++ R
Sbjct: 133 DESGVSKGYGFVHFETEEAANKSIDRV 159
Score = 45.1 bits (105), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 35/162 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGE--TQELFIN---KEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+T++ + ++F+ YG + ++ I K + FGF+ + A++A +L+
Sbjct: 194 VYVKNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELN 253
Query: 171 G-HVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNEL 203
G V +G+ + + R+ +N + VKNL + +E
Sbjct: 254 GKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN--LYVKNLDDSIDDER 311
Query: 204 LELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
L F FG I A V+++E G SK G V F+ A +A+
Sbjct: 312 LRKEFAPFGTITSAKVMMEE-GRSKGFGFVCFSAPEEATKAV 352
>gi|259488599|tpe|CBF88164.1| TPA: nuclear and cytoplasmic polyadenylated RNA-binding protein
pub1 (AFU_orthologue; AFUA_1G12000) [Aspergillus
nidulans FGSC A4]
Length = 477
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLK 175
Y+GN+ T+NDI+ LF+ +G E + ++ F FI+MD NA A +L+G+ +
Sbjct: 310 CYVGNLTPYTTQNDIVPLFQNFGYVIETRMQADRGFAFIKMDTHENAASAICQLNGYNVN 369
Query: 176 GRSLKIRF 183
GR LK +
Sbjct: 370 GRPLKCSW 377
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 71/149 (47%), Gaps = 19/149 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKMF-------GFIRMDYKHNADKAKAK 168
LY+G + +TE+ + ++F+ G + I +K F GF+ D A++A
Sbjct: 92 LYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGAAERAMQT 151
Query: 169 LDGHVLKGRSLKIRFA-PINAA----------IKVKNLTSCVTNELLELAFGVFGDIERA 217
L+G + +++ +A N A I V +L++ V +E+L AF FG + A
Sbjct: 152 LNGRRIHQSEIRVNWAYQSNTANKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEA 211
Query: 218 IVIVDER-GNSKCEGIVEFARKPAAAQAL 245
V+ D + G S+ G V F + A +AL
Sbjct: 212 RVMWDMKTGRSRGYGFVAFRERADAEKAL 240
>gi|300796236|ref|NP_001179218.1| polyadenylate-binding protein 5 [Bos taurus]
gi|296471041|tpg|DAA13156.1| TPA: poly(A) binding protein, cytoplasmic 5 [Bos taurus]
gi|440903676|gb|ELR54310.1| Polyadenylate-binding protein 5 [Bos grunniens mutus]
Length = 382
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 30/164 (18%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKA 165
A +++ N G D+ ++ + ELF YG T+ + + K K FGF+R + A KA
Sbjct: 196 ATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYETHEAAQKA 255
Query: 166 KAKLDGHVLKGRSLKI--------RFA----------------PINAAIKVKNLTSCVTN 201
L G + G+ L + R A P I +KNL + +
Sbjct: 256 VLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDD 315
Query: 202 ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
E L+ F FG I RA V+V E G K G++ F+ A +A+
Sbjct: 316 EKLKEEFSSFGSISRAKVMV-EVGQGKGFGVICFSSFEEATKAV 358
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 67/142 (47%), Gaps = 15/142 (10%)
Query: 118 LGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKLDG 171
+G++ D+TE+ + + F+P G + I ++ + +G++ + +A+ A ++
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 172 HVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIVDE 223
++ G+ ++ ++ + ++ +KNL + N L F FG I V+ D+
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDD 141
Query: 224 RGNSKCEGIVEFARKPAAAQAL 245
G SK V F AA +A+
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAI 162
>gi|407408437|gb|EKF31876.1| poly(A)-binding protein, putative,polyadenylate-binding protein,
putative [Trypanosoma cruzi marinkellei]
Length = 569
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 82/164 (50%), Gaps = 18/164 (10%)
Query: 97 DLPPSEP-QNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----- 150
++ P+ P K ++ A+ LY+G++ +TE ++ELFKP+G + + ++ +
Sbjct: 7 EITPTVPVTTKALQVAS---LYVGDLDPIVTEPHLVELFKPFGTILNVRVCRDIITQRSL 63
Query: 151 -FGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTN 201
+G+I + +A KA L+ + + ++I + + A++ VKNL + V +
Sbjct: 64 GYGYINFNNHDSAAKAMEALNFKRVGDKCMRIMWQQRDPALRYSGNGNVFVKNLKNEVDS 123
Query: 202 ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
L F FGDI V+ DE G S+ G V F AA +A+
Sbjct: 124 RELGAIFKKFGDILSCKVMEDEEGKSRGYGFVHFKNDNAAKEAI 167
>gi|325089595|gb|EGC42905.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Ajellomyces capsulatus H88]
Length = 492
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 17/147 (11%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEK-----MFGFIRMDYKHNADKAKAKLD 170
LY+G + +TE+ + ++F+ G Q + I +K +GF+ D A++A + L+
Sbjct: 94 LYIGGLDARVTEDILRQIFETTGHVQSVKIIPDKNSKGLNYGFVEYDDPGAAERAMSTLN 153
Query: 171 GHVLKGRSLKIRFA-----------PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIV 219
G + +++ +A + I V +L++ V +E+L AF FG + A V
Sbjct: 154 GRRVHQSEIRVNWAYQSNNNNKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARV 213
Query: 220 IVDER-GNSKCEGIVEFARKPAAAQAL 245
+ D + G S+ G V F +P A +AL
Sbjct: 214 MWDMKTGRSRGYGFVAFRERPDAEKAL 240
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLK 175
Y+GN+ T+ND+I LF+ +G E ++ F F++MD NA A +L G+ +
Sbjct: 310 CYVGNLTPYTTQNDLIPLFQNFGYVVETRFQTDRGFAFVKMDTHENAAMAICQLSGYNVN 369
Query: 176 GRSLKIRF 183
GR LK +
Sbjct: 370 GRPLKCSW 377
>gi|224105583|ref|XP_002313862.1| predicted protein [Populus trichocarpa]
gi|222850270|gb|EEE87817.1| predicted protein [Populus trichocarpa]
Length = 642
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 85/167 (50%), Gaps = 20/167 (11%)
Query: 100 PSEPQNKDIKFANN-----CRLYLGNIGGDITENDIIELFKPYGETQELFINKE----KM 150
P++PQN + ANN LY+G++ ++T++ + +LF G+ + + ++ +
Sbjct: 7 PAQPQNVN-GGANNPNFVTTSLYVGDLEANVTDSQLYDLFNQVGQVVSVRVCRDLTSRRS 65
Query: 151 FGFIRMDYKHNADKAKA--KLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVT 200
G+ ++Y + D A+A L+ + G +++ ++ + +++ +KNL +
Sbjct: 66 LGYGYVNYSNPQDAARALEVLNFTPVNGSPIRVMYSHRDPSVRKSGAGNIFIKNLDKAID 125
Query: 201 NELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRR 247
++ L F VFG+I V D G SK G V+F + AA +A+ +
Sbjct: 126 HKALHDTFSVFGNILSCKVATDPSGQSKGYGFVQFDSEEAAQKAIEK 172
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 25/141 (17%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + + F +G + + K +GF++ D + A KA KL+
Sbjct: 115 IFIKNLDKAIDHKALHDTFSVFGNILSCKVATDPSGQSKGYGFVQFDSEEAAQKAIEKLN 174
Query: 171 GHVLKGRSL----------------KIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDI 214
G +L + + K RF + VKNL+ E L AFG FG I
Sbjct: 175 GMLLNDKQVYVGPFLRKQERDTATDKTRFN----NVFVKNLSETTAEEDLNKAFGEFGTI 230
Query: 215 ERAIVIVDERGNSKCEGIVEF 235
+V+ D G S+C G V F
Sbjct: 231 TSVVVMRDGDGKSRCFGFVNF 251
>gi|281345572|gb|EFB21156.1| hypothetical protein PANDA_005635 [Ailuropoda melanoleuca]
Length = 605
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 73/144 (50%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + ++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFEVIKGQPVRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
D+ G S+ G V F AA QA+
Sbjct: 133 DDHG-SRGFGFVHFETHEAAHQAI 155
Score = 42.4 bits (98), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 74/171 (43%), Gaps = 37/171 (21%)
Query: 106 KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKH 160
+ ++F N +Y+ N+ D+ E + +LF +G+ + + ++ + FGF+ +
Sbjct: 186 RAMEFTN---IYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDIGHSRGFGFVNFEKHE 242
Query: 161 NADKAKAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKN 194
A KA ++G + GR L + R+ +N + VKN
Sbjct: 243 EAQKAVMDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRATRYQGVN--LYVKN 300
Query: 195 LTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
L + +E L F +G I A V+ E G+SK G V F+ A +A+
Sbjct: 301 LDDSIDDEKLRKEFSPYGVITSAKVMT-EGGHSKGFGFVCFSSPEEATKAV 350
>gi|83286233|ref|XP_730072.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23489660|gb|EAA21637.1| Unknown protein [Plasmodium yoelii yoelii]
Length = 396
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 28/159 (17%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFI------NKEKMFGFIRMDYKHNADKAKAK 168
+ ++G I +IT I E F+ YG Q + I + + F F+ M N DK
Sbjct: 158 KFFIGGIPQNITNKYITEYFEKYGSVQNVVIAQDHETKRNRGFAFVTMSSHINKDKIL-- 215
Query: 169 LDGHVLKGRSLKIR----FAP--INAAIKVKNLTSCVTNELLE--------------LAF 208
+D H L G+ + +R P I I V L+ T + LE + F
Sbjct: 216 MDSHELNGKRVDVREEHNTTPSDIQRKIFVGGLSYYWTKDTLERHKQLKNKINKYIYIYF 275
Query: 209 GVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRR 247
FG+I+ ++VD G S+C G V F + + A+ L+
Sbjct: 276 SAFGEIDIVQIVVDSSGRSRCFGFVVFTNESSVAKVLKH 314
>gi|380019828|ref|XP_003693803.1| PREDICTED: polyadenylate-binding protein 1-like [Apis florea]
Length = 630
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 74/147 (50%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ DITE + E F G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++KGR ++I ++ + +++ +KNL + N+ + F FG+I V
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQ 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE G SK G V F + AA +++ R
Sbjct: 133 DESGVSKGYGFVHFETEEAANKSIDRV 159
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 35/162 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYG--ETQELFIN---KEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+T++ + E+F+ YG + ++ I K + FGF+ + A++A +L+
Sbjct: 194 VYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELN 253
Query: 171 G-HVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNEL 203
G V +G+ + + R+ +N + VKNL + +E
Sbjct: 254 GKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN--LYVKNLDDSIDDER 311
Query: 204 LELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
L F FG I A V+++E G SK G V F+ A +A+
Sbjct: 312 LRKEFAPFGTITSAKVMMEE-GRSKGFGFVCFSAPEEATKAV 352
>gi|255718749|ref|XP_002555655.1| KLTH0G14344p [Lachancea thermotolerans]
gi|238937039|emb|CAR25218.1| KLTH0G14344p [Lachancea thermotolerans CBS 6340]
Length = 587
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 67/134 (50%), Gaps = 14/134 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYK-HNADK-AKAKL 169
LY+G + +TE + +LF P G + + ++ + G+ +++ HNA + A KL
Sbjct: 42 LYVGELDPSVTEALLYDLFSPIGSVSSIRVCRDAITKTSLGYAYVNFHDHNAGRTAIEKL 101
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ +KGR +I ++ + +++ +KNL + N+ L F VFG+I +
Sbjct: 102 NYTPIKGRPCRIMWSQRDPSLRKKGSGNVFIKNLHPAIDNKALHDTFSVFGNILSCKIAT 161
Query: 222 DERGNSKCEGIVEF 235
DE G S+ G V F
Sbjct: 162 DETGKSRKFGFVHF 175
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 33/166 (19%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKA 165
+N +Y+ NI + T+ + ++F YG + ++ + FGF+ + + A KA
Sbjct: 218 SNFTNVYVKNIDSETTQEEFEKMFSNYGAITSAVLERDNEGKLRGFGFVNFEDHNAALKA 277
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+L+ KG+ L + ++ +N + VKNL V
Sbjct: 278 CEELNDTDFKGQKLYVGRAQKKYERLQELKKQYESSRMEKLAKYQGVN--LFVKNLDDSV 335
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
++ LE F FG I V+ DE GNSK G V F+ A +A+
Sbjct: 336 DDQKLEEEFAPFGTITSVKVMRDEAGNSKGFGFVCFSTPEEATKAI 381
>gi|198426965|ref|XP_002120230.1| PREDICTED: similar to RAVER1 [Ciona intestinalis]
Length = 851
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 3/139 (2%)
Query: 108 IKFANNCR-LYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAK 166
++FA CR + + NI + DI+EL KPY Q++ I+K + + A +
Sbjct: 18 LEFAKRCRRISIKNIAAGVLNQDILELLKPYF-YQQIHIDKNSLSCKAVLLDGSCAARCL 76
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVI-VDERG 225
+L+G + +G+ L + A + + V L T++ FG ER ++ D G
Sbjct: 77 EELNGKMFRGQRLSVSLASCDFMLCVTQLPLSFTHDQFLSLITPFGTPERCFLVHSDVTG 136
Query: 226 NSKCEGIVEFARKPAAAQA 244
SK G VEF K ++ +A
Sbjct: 137 QSKGYGCVEFTSKESSIKA 155
>gi|296815242|ref|XP_002847958.1| polyadenylate-binding protein [Arthroderma otae CBS 113480]
gi|238840983|gb|EEQ30645.1| polyadenylate-binding protein [Arthroderma otae CBS 113480]
Length = 708
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 65/133 (48%), Gaps = 14/133 (10%)
Query: 130 IIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KAKAKLDGHVLKGRSLKIRF 183
+ ELF G+ + + ++ + G+ ++Y + AD +A L+ ++KGR +I +
Sbjct: 2 LYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGRPCRIMW 61
Query: 184 APINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEF 235
+ + A++ +KNL + + N+ L F FG+I V DE GNSK G V +
Sbjct: 62 SQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGNSKGYGFVHY 121
Query: 236 ARKPAAAQALRRC 248
AA A++
Sbjct: 122 ETAEAATNAIKHV 134
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 30/140 (21%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN------KEKMFGFIRMDYKHNADK 164
AN +Y+ N+ D+T+ + LF+ YG+ ++ K + FGF+ A
Sbjct: 164 ANFTNIYVKNVEQDVTDEEFRALFEKYGDITSATLSRDNETGKSRGFGFVNFSDHEAASA 223
Query: 165 AKAKLDGHVLKGRSLKI-----------------RFAPINAAIK-------VKNLTSCVT 200
A L+ + LKG+ L + A I A K +KNL+ +
Sbjct: 224 AVEGLNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDID 283
Query: 201 NELLELAFGVFGDIERAIVI 220
+E L F +G+I A V+
Sbjct: 284 DEKLRELFSSYGNITSAKVM 303
>gi|309271474|ref|XP_003085306.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Mus
musculus]
Length = 229
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 75/144 (52%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ ++TE+ + E F P G + I ++K+ G+ ++Y+ D +A +
Sbjct: 33 LYVGDLHPEVTESMLYEKFSPAGPILSIRICRDKVTRRSLGYAYVNYQQPVDAKRALETM 92
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+ GR ++I ++ + +++ +KNL + N+ L F FG+I V
Sbjct: 93 NFDVINGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVAC 152
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE+G K G V F ++ +A +A+
Sbjct: 153 DEKG-PKGYGFVHFQKQESAERAI 175
>gi|294892363|ref|XP_002774026.1| Polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239879230|gb|EER05842.1| Polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 636
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 73/147 (49%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E+F G + + ++ + G+ +++ + AD +A L
Sbjct: 36 LYVGDLKPDVTEAMLYEVFNGVGPVASIRVCRDSVTRRSLGYAYVNFHNVADAERALDTL 95
Query: 170 DGHVLKGRSLKIRFA---PI-----NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++G+ +I ++ P NA + VKNL + N+ L F +FG+I V
Sbjct: 96 NYSPIRGKQCRIMWSHRDPTLRKAGNANVFVKNLDKTIDNKALYDTFSLFGNILSCKVAT 155
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
D+ G S+ G V F +A +A+ +
Sbjct: 156 DDDGKSRGYGFVHFENDESAHKAITKL 182
>gi|168036104|ref|XP_001770548.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678256|gb|EDQ64717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 645
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 72/150 (48%), Gaps = 14/150 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAK 166
+ LY+G++ ++E + E+F G+ + + ++ + + ++ + +A +A
Sbjct: 23 STSLYVGDLESTVSEAQLYEIFSQVGQVVSIRVCRDLITRRSLGYAYVNYNNAQDATRAL 82
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
L+ + + G+ ++I F+ + +I+ +KNL + N+ L F FG I
Sbjct: 83 ELLNFNAVNGKPIRIMFSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFAAFGTILSCK 142
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V D G SK G V+F ++ +A A+ +
Sbjct: 143 VATDPSGQSKGYGFVQFEQEESAQTAIEKV 172
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 70/159 (44%), Gaps = 19/159 (11%)
Query: 105 NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYK 159
+ I+ + +++ N+ I + + F +G + + K +GF++ + +
Sbjct: 103 DPSIRKSGTANIFIKNLDKSIDNKALHDTFAAFGTILSCKVATDPSGQSKGYGFVQFEQE 162
Query: 160 HNADKAKAKLDGHVLKGRSLKI-------------RFAPINAAIKVKNLTSCVTNELLEL 206
+A A K++G +L + + + + N + VKNL T++ L+
Sbjct: 163 ESAQTAIEKVNGMLLNDKQVFVGPFVRRQERDQSGVVSKFNN-VYVKNLADSTTDDELKK 221
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F +G I A+V+ D G SKC G V F AA+A+
Sbjct: 222 VFEAYGPISSAVVMRDNEGKSKCFGFVNFEHADDAAKAV 260
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 71/166 (42%), Gaps = 32/166 (19%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNAD 163
KF N +Y+ N+ T++++ ++F+ YG + K K FGF+ ++ +A
Sbjct: 201 KFNN---VYVKNLADSTTDDELKKVFEAYGPISSAVVMRDNEGKSKCFGFVNFEHADDAA 257
Query: 164 KAKAKLDG--------HVLKGRSLKIRFAPINAA----------------IKVKNLTSCV 199
KA L+G +V + + R A + A + +KNL +
Sbjct: 258 KAVEALNGKKFDEKEWYVGRAQKKSEREAELRAKFEQERKERIEKYQGVNLYLKNLDDTI 317
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+E L F +G I V+ D +G S+ G V F+ A +A+
Sbjct: 318 DDEKLREIFSEYGTIVSCKVMRDPQGQSRGSGFVAFSSPDEATRAV 363
>gi|194044632|ref|XP_001927442.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Sus scrofa]
Length = 610
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 73/145 (50%), Gaps = 15/145 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + ++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALR 246
D+ G S+ G V F AA A+R
Sbjct: 133 DDHG-SRGFGFVHFETHEAAQNAIR 156
Score = 42.0 bits (97), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 74/171 (43%), Gaps = 37/171 (21%)
Query: 106 KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKH 160
+ ++F N +Y+ N+ D+ E + +LF +G+ + + ++ FGF+ +
Sbjct: 186 RALEFTN---IYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHE 242
Query: 161 NADKAKAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKN 194
+A KA ++G + GR L + R+ +N + VKN
Sbjct: 243 DAQKAVTDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVN--LYVKN 300
Query: 195 LTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
L + +E L F +G I A V+ E G+SK G V F+ A +A+
Sbjct: 301 LDDSIDDEKLRKEFAPYGMITSAKVMT-EGGHSKGFGFVCFSSPEEATKAV 350
>gi|390460450|ref|XP_002745401.2| PREDICTED: polyadenylate-binding protein 4-like [Callithrix
jacchus]
Length = 384
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 80/155 (51%), Gaps = 19/155 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE+ + F G + I ++++ G+ +++ H AD KA +
Sbjct: 12 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRSSLGYAYVNFLHLADAQKALDTM 71
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++KG+S+++ ++ +A ++ +KNL + N+ L F FG I + V+
Sbjct: 72 NFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMS 131
Query: 222 DERGNSKCEGIVEFARKPAAAQALR----RCAEGC 252
D++G SK V F + AA +A+ + +GC
Sbjct: 132 DDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLQGC 165
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 33/174 (18%)
Query: 101 SEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIR 155
+E ++K +F N +Y+ N GGD+ + + ++F YG+T + + K K FGF+
Sbjct: 180 AELRSKASEFTN---VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVS 236
Query: 156 MDYKHNADKAKAKLDGHVLKGR---------------SLKIRFAPIN---------AAIK 191
D A KA +++G + G+ LK F + +
Sbjct: 237 FDSHEAAKKAVEEMNGRDINGQLIFVARAQKKVERQAELKQMFEQLKKERIRGCQVVKLY 296
Query: 192 VKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
VKNL + +E L F FG I R + ++ E G SK G++ F+ A +A+
Sbjct: 297 VKNLDDTIDDEKLRNEFSSFGSISR-VKVMQEEGQSKGFGLICFSSPEDALKAM 349
>gi|297664724|ref|XP_002810779.1| PREDICTED: ribonucleoprotein PTB-binding 2 [Pongo abelii]
Length = 667
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 68/137 (49%), Gaps = 2/137 (1%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168
+ +N ++ + N+ D ++ +L K Y + + ++++ K F+ + A A
Sbjct: 311 ELSNRRKILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQM 369
Query: 169 LDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGNS 227
+ +G+ L ++ P +A + + NL T+E E +G+IER ++ E G+S
Sbjct: 370 FHQYSFRGKDLIVQLQPTDALLCITNLPISFTSEEFEELVRAYGNIERCFLVYSEVTGHS 429
Query: 228 KCEGIVEFARKPAAAQA 244
K G VE+ +K AA+A
Sbjct: 430 KGYGFVEYMKKDFAAKA 446
>gi|91095037|ref|XP_975975.1| PREDICTED: similar to poly A binding protein isoform 4 [Tribolium
castaneum]
gi|270014772|gb|EFA11220.1| hypothetical protein TcasGA2_TC005185 [Tribolium castaneum]
Length = 607
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 74/147 (50%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ DITE + E F G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHTDITEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++KGR ++I ++ + +++ +KNL + N+ + F FG+I V
Sbjct: 73 NFDLIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQ 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE G SK G V F + AA +++ +
Sbjct: 133 DENGTSKGYGFVHFETEEAANKSIEKV 159
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 31/160 (19%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+TE + +F+ YG+ I K K FGF+ + A+ A L+
Sbjct: 194 VYVKNFGEDLTEEQLRTMFEKYGKITSYKIMSKDDGKSKGFGFVAFESPEAAETAVEALN 253
Query: 171 G-HVLKGRSLKI---------------RFAPIN---------AAIKVKNLTSCVTNELLE 205
G ++ G+ L + RF + + VKNL + +E L
Sbjct: 254 GKEIIDGKPLYVGRAQKKAERQQELKRRFEALKMERLNRYQGVNLYVKNLDDTIDDERLR 313
Query: 206 LAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++++ SK G V F+ A +A+
Sbjct: 314 KEFSPFGTITSAKVMMED-NRSKGFGFVCFSSPEEATKAV 352
>gi|380799249|gb|AFE71500.1| polyadenylate-binding protein 5, partial [Macaca mulatta]
Length = 256
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 71/159 (44%), Gaps = 30/159 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+++ NIG DI + + ELF YG T+ + + K K FGF+R + A KA L
Sbjct: 75 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 134
Query: 171 GHVLKGRSLKI--------RFA----------------PINAAIKVKNLTSCVTNELLEL 206
G + G+ L + R A P I +KNL + +E L+
Sbjct: 135 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 194
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I RA V++ E G K G+V F+ A +A+
Sbjct: 195 EFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAV 232
>gi|396488840|ref|XP_003842956.1| hypothetical protein LEMA_P087160.1 [Leptosphaeria maculans JN3]
gi|312219534|emb|CBX99477.1| hypothetical protein LEMA_P087160.1 [Leptosphaeria maculans JN3]
Length = 590
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 55/94 (58%), Gaps = 12/94 (12%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-------FGFIRMDYKHNADKAKA 167
RLY+GNI +TE D+ E+F+PYGE +++ + ++++ +GF++ +A A A
Sbjct: 281 RLYVGNIHFSVTEKDLQEIFEPYGELEQVILQRDELNPGRSKGYGFVQFVDPTHAKDALA 340
Query: 168 KLDGHVLKGRSLKI-----RFAPINAAIKVKNLT 196
+++G L GR +++ +F P + A ++ T
Sbjct: 341 EMNGFELAGRQIRVGLGNDKFTPESTANLLRTFT 374
>gi|301778611|ref|XP_002924723.1| PREDICTED: ribonucleoprotein PTB-binding 2-like [Ailuropoda
melanoleuca]
Length = 636
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 68/137 (49%), Gaps = 2/137 (1%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168
K +N ++ + N+ D ++ +L + Y E + ++++ K F+ + A A
Sbjct: 23 KLSNRRKILVKNLPQDSNCQEVHDLLQDY-ELKYCYVDRNKRTAFVTLLNGEQAQSAIQM 81
Query: 169 LDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGNS 227
+ +G+ L ++ P +A + + NL + T E E +G+IER ++ E G+S
Sbjct: 82 FHQYSFRGKDLIVQLQPTDALLCITNLPTSFTLEEFEELVRAYGNIERCFLVYSEVTGHS 141
Query: 228 KCEGIVEFARKPAAAQA 244
K G VE+ +K AA+A
Sbjct: 142 KGYGFVEYMKKDFAAKA 158
>gi|340719924|ref|XP_003398394.1| PREDICTED: polyadenylate-binding protein 1-like isoform 4 [Bombus
terrestris]
Length = 612
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 74/147 (50%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ DITE + E F G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++KGR ++I ++ + +++ +KNL + N+ + F FG+I V
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQ 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE G SK G V F + AA +++ R
Sbjct: 133 DESGVSKGYGFVHFETEEAANKSIDRV 159
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 35/162 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYG--ETQELFIN---KEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+T++ + E+F+ YG + ++ I K + FGF+ + A++A +L+
Sbjct: 194 VYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELN 253
Query: 171 G-HVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNEL 203
G V +G+ + + R+ +N + VKNL + +E
Sbjct: 254 GKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN--LYVKNLDDSIDDER 311
Query: 204 LELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
L F FG I A V+++E G SK G V F+ A +A+
Sbjct: 312 LRKEFAPFGTITSAKVMMEE-GRSKGFGFVCFSAPEEATKAV 352
>gi|297276094|ref|XP_001105380.2| PREDICTED: ribonucleoprotein PTB-binding 1-like [Macaca mulatta]
Length = 700
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 126 TENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185
+ ++ +L Y E + F++K K F+ + A+ A L+ R L ++ P
Sbjct: 32 SPQEVHDLLSDY-ELKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSCLRERELSVQLQP 90
Query: 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDER-GNSKCEGIVEFARKPAAAQA 244
+A + V NL +T + E FG +ER ++ ER G+SK G E+ +K +AA+A
Sbjct: 91 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARA 150
>gi|395530495|ref|XP_003767329.1| PREDICTED: ribonucleoprotein PTB-binding 2 [Sarcophilus harrisii]
Length = 661
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 129 DIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINA 188
++ +L K Y E + ++++ K F+ + A A + L+G+ + ++ P +A
Sbjct: 59 EVHDLLKDY-ELKYCYVDRNKRTAFVTLLDGEQAQNAIQTFHQYSLRGKEITVQLQPTDA 117
Query: 189 AIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQA 244
+ V NL T E E FG+IER ++ +E G+SK G VE+ +K +AA+A
Sbjct: 118 LLCVTNLPPSFTIEEFEELVRTFGNIERCFLVYNETTGHSKGYGFVEYMKKDSAAKA 174
>gi|297847300|ref|XP_002891531.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
gi|297337373|gb|EFH67790.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
Length = 669
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAK 166
LY+G++ +T++ + E F G+ + + ++ +G++ +A +A
Sbjct: 38 TTSLYVGDLDATVTDSQLFEAFSQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRAL 97
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
+L+ L GR++++ ++ + +++ +KNL + ++ L F FG I
Sbjct: 98 NELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCK 157
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V VD G SK G V++ AA +A+ +
Sbjct: 158 VAVDPSGQSKGYGFVQYDTDEAAQRAIDKL 187
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 17/147 (11%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + E F +G + + K +GF++ D A +A KL+
Sbjct: 129 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQRAIDKLN 188
Query: 171 GHVLKGRSL-------KIRFAPINAAIK-----VKNLTSCVTNELLELAFGVFGDIERAI 218
G +L + + K++ P +K VKNL+ +++E L FG FG +
Sbjct: 189 GMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCV 248
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQAL 245
++ D G SK G V F AA+A+
Sbjct: 249 IMRDGEGKSKGFGFVNFENSDDAARAV 275
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 33/187 (17%)
Query: 102 EPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRM 156
+P + +KF N +Y+ N+ +++ ++ ++F +G T I K K FGF+
Sbjct: 209 DPSGEKVKFTN---VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNF 265
Query: 157 DYKHNADKAKAKLDGHVLKGRS---------------LKIRF--APINAAIK-------V 192
+ +A +A L+G + LK +F + AA K V
Sbjct: 266 ENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYV 325
Query: 193 KNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGC 252
KNL VT++ L F FG I V+ D G S+ G V F+ A++A+ G
Sbjct: 326 KNLDESVTDDKLREHFAPFGTITSCKVMRDPTGVSRGSGFVAFSTPEEASRAITEM-NGK 384
Query: 253 FFLTQSL 259
+T+ L
Sbjct: 385 MIVTKPL 391
>gi|332208761|ref|XP_003253477.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 590
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 72/144 (50%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ +LKG+ ++I ++ + ++ +KNL + N+ L F FG+I V
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVAC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE G S+ G V F AA QA+
Sbjct: 133 DEHG-SRGFGFVHFETHEAAQQAI 155
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + ++ FGF+ + A +A ++G
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNG 160
Query: 172 HVLKGRSLKI--------RFAPINA------AIKVKNLTSCVTNELLELAFGVFGDIERA 217
+L R + + R A + A I VKNL V + L+ F FG +
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G+S+C G V F + A +A+
Sbjct: 221 KVMRDNSGHSRCFGFVNFEKHEEAQKAV 248
>gi|302785327|ref|XP_002974435.1| hypothetical protein SELMODRAFT_101161 [Selaginella moellendorffii]
gi|300158033|gb|EFJ24657.1| hypothetical protein SELMODRAFT_101161 [Selaginella moellendorffii]
Length = 642
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 73/147 (49%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQEL-----FINKEKM-FGFIRMDYKHNADKAKAKL 169
LY+G++ ++TE + ++F + I+K + + ++ + +A +A L
Sbjct: 39 LYVGDLDPNVTEGQLYDVFNQVAPVLSIRVCRDLISKRSLGYAYVNYNTGQDASRALEML 98
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++ G+ ++I F+ + +I+ +KNL + N+ L F FG+I V V
Sbjct: 99 NFSLVNGKPIRIMFSHRDPSIRKSGMANIFIKNLDKSIDNKALYDTFAQFGNILSCKVAV 158
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
D G S+ G V+F ++ AA A+++
Sbjct: 159 DSSGQSRGYGFVQFEQEDAAQSAIKQV 185
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 69/160 (43%), Gaps = 19/160 (11%)
Query: 104 QNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDY 158
++ I+ + +++ N+ I + + F +G + + + +GF++ +
Sbjct: 115 RDPSIRKSGMANIFIKNLDKSIDNKALYDTFAQFGNILSCKVAVDSSGQSRGYGFVQFEQ 174
Query: 159 KHNADKAKAKLDGHVL-------------KGRSLKIRFAPINAAIKVKNLTSCVTNELLE 205
+ A A +++G +L + R L N + VKNL T++ L+
Sbjct: 175 EDAAQSAIKQVNGMLLIEKQVFVGPFVRRQERDLTGGVTKFNN-VYVKNLGDATTDDDLK 233
Query: 206 LAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
FG FG I A+V+ D G SKC G V F AA A+
Sbjct: 234 RVFGEFGPISSAVVMRDPEGKSKCFGFVNFENADDAALAV 273
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 69/166 (41%), Gaps = 32/166 (19%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNAD 163
KF N +Y+ N+G T++D+ +F +G + K K FGF+ + +A
Sbjct: 214 KFNN---VYVKNLGDATTDDDLKRVFGEFGPISSAVVMRDPEGKSKCFGFVNFENADDAA 270
Query: 164 KAKAKLDGHVLKGRSLKI--------RFAPINA----------------AIKVKNLTSCV 199
A +L+G + + + R A + A + +KNL +
Sbjct: 271 LAVEELNGKKMDDKEWYVGRAQKKSEREAELRARYDQERKERSDKYQGVNLYLKNLDDTI 330
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
++ L F FG I V+ D +G+SK G V F+ A +A+
Sbjct: 331 DDDKLRELFHGFGTIISCKVMRDPQGHSKGSGFVAFSTTEEANRAM 376
>gi|302808075|ref|XP_002985732.1| hypothetical protein SELMODRAFT_122762 [Selaginella moellendorffii]
gi|300146641|gb|EFJ13310.1| hypothetical protein SELMODRAFT_122762 [Selaginella moellendorffii]
Length = 635
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 73/147 (49%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQEL-----FINKEKM-FGFIRMDYKHNADKAKAKL 169
LY+G++ ++TE + ++F + I+K + + ++ + +A +A L
Sbjct: 39 LYVGDLDPNVTEGQLYDVFNQVAPVLSIRVCRDLISKRSLGYAYVNYNTGQDASRALEML 98
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++ G+ ++I F+ + +I+ +KNL + N+ L F FG+I V V
Sbjct: 99 NFSLVNGKPIRIMFSHRDPSIRKSGMANIFIKNLDKSIDNKALYDTFAQFGNILSCKVAV 158
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
D G S+ G V+F ++ AA A+++
Sbjct: 159 DSSGQSRGYGFVQFEQEDAAQSAIKQV 185
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 70/160 (43%), Gaps = 19/160 (11%)
Query: 104 QNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDY 158
++ I+ + +++ N+ I + + F +G + + + +GF++ +
Sbjct: 115 RDPSIRKSGMANIFIKNLDKSIDNKALYDTFAQFGNILSCKVAVDSSGQSRGYGFVQFEQ 174
Query: 159 KHNADKAKAKLDGHVL-------------KGRSLKIRFAPINAAIKVKNLTSCVTNELLE 205
+ A A +++G +L + R L A N + VKNL T++ L+
Sbjct: 175 EDAAQSAIKQVNGMLLIEKQVFVGPFVRRQERDLTGGIAKFNN-VYVKNLGDATTDDDLK 233
Query: 206 LAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
FG FG I A+V+ D G SKC G V F AA A+
Sbjct: 234 RVFGEFGPISSAVVMRDPEGKSKCFGFVNFENADDAALAV 273
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 69/166 (41%), Gaps = 32/166 (19%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNAD 163
KF N +Y+ N+G T++D+ +F +G + K K FGF+ + +A
Sbjct: 214 KFNN---VYVKNLGDATTDDDLKRVFGEFGPISSAVVMRDPEGKSKCFGFVNFENADDAA 270
Query: 164 KAKAKLDGHVLKGRSLKI--------RFAPINA----------------AIKVKNLTSCV 199
A +L+G + + + R A + A + +KNL +
Sbjct: 271 LAVEELNGKKMDDKEWYVGRAQKKSEREAELRARYDQERKERSDKYQGVNLYLKNLDDTI 330
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
++ L F FG I V+ D +G+SK G V F+ A +A+
Sbjct: 331 DDDKLRELFHGFGTIISCKVMRDPQGHSKGSGFVAFSTTEEANRAM 376
>gi|392927774|ref|NP_510259.2| Protein PAB-2, isoform b [Caenorhabditis elegans]
gi|371570799|emb|CAA90446.2| Protein PAB-2, isoform b [Caenorhabditis elegans]
Length = 575
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 19/162 (11%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKA 165
A N +++ N+ I + + F +G + + K +GF+ + +H+A A
Sbjct: 25 AGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTA 84
Query: 166 KAKLDGHVLKGRSLKI-RFAPINAAIK-------------VKNLTSCVTNELLELAFGVF 211
K++G +L + + + +F P +K VKN + E L F F
Sbjct: 85 IEKVNGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKF 144
Query: 212 GDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCF 253
G+I A+V+ D +G K G V FA + AA QA+ + +
Sbjct: 145 GEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSIL 186
>gi|312378306|gb|EFR24923.1| hypothetical protein AND_10202 [Anopheles darlingi]
Length = 645
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 73/147 (49%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ DITE + E F G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHADITEATLFEKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ +KGR ++I ++ + +++ +KNL + N+ + F FG+I V
Sbjct: 73 NFDTIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKKIDNKAMYDTFSAFGNILSCKVAQ 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE+G SK G V F + +A ++ +
Sbjct: 133 DEKGQSKGYGFVHFETEESANTSIEKV 159
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 72/159 (45%), Gaps = 30/159 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKL-- 169
+Y+ N G D+TE + E+F+ YG + K + FGF+ + A++A +L
Sbjct: 194 VYVKNFGEDLTEEALHEMFEKYGSITSHRVMMKDGKSRGFGFVAFENPDAAERAVQELNA 253
Query: 170 ----DGHVLK-GRS---------LKIRFAPIN---------AAIKVKNLTSCVTNELLEL 206
DG VL GR+ LK RF + + VKNL + +E L
Sbjct: 254 KELSDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYHGVNLYVKNLDDTIDDERLRK 313
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F +G I A V++DE G SK G V F+ A +A+
Sbjct: 314 EFAPYGTITSAKVMLDE-GRSKGFGFVCFSAPDEATKAV 351
>gi|384493509|gb|EIE84000.1| hypothetical protein RO3G_08705 [Rhizopus delemar RA 99-880]
Length = 624
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 73/150 (48%), Gaps = 14/150 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KAK 166
+ LY+G + +TE + E+F G + + ++ + G+ +++ + D +A
Sbjct: 43 SASLYVGELDPSVTEAMLFEMFNMIGPVASIRVCRDAVTRRSLGYAYVNFHNIVDGERAL 102
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
L+ ++KG+ +I ++ + +++ +KNL + N+ L F FG+I
Sbjct: 103 ESLNYTLIKGKPCRIMWSQRDPSLRKTGSGNVFIKNLDPSIDNKALHDTFSAFGNILSCK 162
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALRRC 248
+ +DE GNSK G V + + AA A++
Sbjct: 163 IALDESGNSKGYGFVHYETEEAADNAIKHV 192
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 73/180 (40%), Gaps = 34/180 (18%)
Query: 98 LPPSEPQNKDIKF-ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMF 151
+P E Q K +F A +Y+ N+ + + + E+ +G + K K F
Sbjct: 208 VPKKERQAKIEQFRAKFTNVYVKNLDESVKDEEFNEMLAKFGPITSALVQTDDEGKSKGF 267
Query: 152 GFIRMDYKHNADKAKAKLDGHVLKGRSLKI--------------------------RFAP 185
GF+ + +A KA L+ KG+ L + ++
Sbjct: 268 GFVNFENHEDAQKAVDALNETEHKGKILYVARAQKKTEREEELRKQYEQAKLEKLAKYQG 327
Query: 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+N + +KNL + +E L F V+G I A V+ DE+ SK G V F+ A +A+
Sbjct: 328 VN--LYIKNLDDDIDDEKLRQEFSVYGVITSAKVMCDEKDTSKGFGFVCFSSPDEATKAV 385
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 59/149 (39%), Gaps = 19/149 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + + F +G I K +GF+ + + AD A ++
Sbjct: 134 VFIKNLDPSIDNKALHDTFSAFGNILSCKIALDESGNSKGYGFVHYETEEAADNAIKHVN 193
Query: 171 GHVL-------------KGRSLKI-RFAPINAAIKVKNLTSCVTNELLELAFGVFGDIER 216
G +L K R KI +F + VKNL V +E FG I
Sbjct: 194 GMLLNDKKVYVGRHVPKKERQAKIEQFRAKFTNVYVKNLDESVKDEEFNEMLAKFGPITS 253
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQAL 245
A+V D+ G SK G V F A +A+
Sbjct: 254 ALVQTDDEGKSKGFGFVNFENHEDAQKAV 282
>gi|217074874|gb|ACJ85797.1| unknown [Medicago truncatula]
Length = 494
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 73/147 (49%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKL 169
LY+G++ D+T++ + +LF G+ + I ++ +G++ H+A KA L
Sbjct: 26 LYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMDVL 85
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ L + ++I ++ + +++ +KNL + ++ L F +FG+I + +
Sbjct: 86 NFTPLNNKPIRIMYSHRDPSVRKSGAANIFIKNLDRAIDHKALYDTFSIFGNILSCKIAM 145
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
D G SK G V+F + +A A+ +
Sbjct: 146 DASGLSKGYGFVQFENEESAQSAIDKL 172
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 17/137 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + + F +G I + K +GF++ + + +A A KL+
Sbjct: 114 IFIKNLDRAIDHKALYDTFSIFGNILSCKIAMDASGLSKGYGFVQFENEESAQSAIDKLN 173
Query: 171 GHVLKGRSLKI-RF--------APINAA---IKVKNLTSCVTNELLELAFGVFGDIERAI 218
G +L + + + F A NA + VKNL+ VT++ L+ FG +G I A+
Sbjct: 174 GMLLNDKPVYVGHFQRKQDRDNALSNAKFNNVYVKNLSESVTDDDLKNTFGEYGTITSAV 233
Query: 219 VIVDERGNSKCEGIVEF 235
V+ D G SKC G V F
Sbjct: 234 VMRDVDGKSKCFGFVNF 250
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 68/168 (40%), Gaps = 36/168 (21%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNAD 163
KF N +Y+ N+ +T++D+ F YG + K K FGF+ + A
Sbjct: 201 KFNN---VYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVDGKSKCFGFVNFENADAAA 257
Query: 164 KAKAKLDGHVLK------GRSLKI--------------------RFAPINAAIKVKNLTS 197
+A L+G G++LK +F A + +KNL
Sbjct: 258 EAVEALNGKKFDDKEWYVGKALKKYERELELKERHEQSMKETVDKF--YGANLYLKNLDD 315
Query: 198 CVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
VT+E L F FG + ++ D +G S+ G V F+ A +AL
Sbjct: 316 SVTDEKLSELFSEFGTVTSCKILRDPQGISRGSGFVAFSTPEEATRAL 363
>gi|115459296|ref|NP_001053248.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|32490269|emb|CAE05558.1| OSJNBb0116K07.11 [Oryza sativa Japonica Group]
gi|113564819|dbj|BAF15162.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|215695125|dbj|BAG90316.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 659
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 73/145 (50%), Gaps = 14/145 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELF----INKEKMFGFIRMDYKHNADKAKAK--L 169
LY+G++ +T++ + ELF G+ + I+ + G+ +++ + D A+A L
Sbjct: 41 LYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALELL 100
Query: 170 DGHVLKGRSLKIRFA---PIN-----AAIKVKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ L G+ +++ ++ P + A I +KNL + ++ L F FG+I V
Sbjct: 101 NFAPLNGKPIRVMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVAT 160
Query: 222 DERGNSKCEGIVEFARKPAAAQALR 246
DE G SK G V++ + AA A++
Sbjct: 161 DEMGQSKGFGFVQYDKGEAAQSAIK 185
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 67/150 (44%), Gaps = 17/150 (11%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKHNADKAKA 167
+ +++ N+ I + + F +G + ++M FGF++ D A A
Sbjct: 126 SANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIK 185
Query: 168 KLDGHVLKGRSLKI--------RFAPINAA----IKVKNLTSCVTNELLELAFGVFGDIE 215
L+G ++ + + + R ++ + VKNL+ T E L FG +G+I
Sbjct: 186 SLNGMLINDKPVYVGPFLRKQERENSVDKTKFNNVFVKNLSESTTKEDLVKIFGAYGNIT 245
Query: 216 RAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
A+++V G S+C G + F AA+A+
Sbjct: 246 SAVIMVGMDGKSRCFGFINFKSPDDAARAV 275
Score = 38.5 bits (88), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLD 170
LY+ N+ I ++ + ELF YG+ I ++ K GF+ + A +A +++
Sbjct: 323 LYMKNLDDSIGDDQLCELFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMN 382
Query: 171 GHVLKGRSLKIRFA 184
G ++ G+ L + FA
Sbjct: 383 GKMISGKPLYVAFA 396
>gi|301763992|ref|XP_002917400.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 611
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 73/144 (50%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + ++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFEVIKGQPVRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
D+ G S+ G V F AA QA+
Sbjct: 133 DDHG-SRGFGFVHFETHEAAHQAI 155
Score = 42.4 bits (98), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 74/171 (43%), Gaps = 37/171 (21%)
Query: 106 KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKH 160
+ ++F N +Y+ N+ D+ E + +LF +G+ + + ++ + FGF+ +
Sbjct: 186 RAMEFTN---IYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDIGHSRGFGFVNFEKHE 242
Query: 161 NADKAKAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKN 194
A KA ++G + GR L + R+ +N + VKN
Sbjct: 243 EAQKAVMDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRATRYQGVN--LYVKN 300
Query: 195 LTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
L + +E L F +G I A V+ E G+SK G V F+ A +A+
Sbjct: 301 LDDSIDDEKLRKEFSPYGVITSAKVMT-EGGHSKGFGFVCFSSPEEATKAV 350
>gi|119923699|ref|XP_599343.3| PREDICTED: poly(A) binding protein, cytoplasmic 1-like 2A [Bos
taurus]
gi|297493007|ref|XP_002700050.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like 2A [Bos
taurus]
gi|358420984|ref|XP_003584787.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like 2A [Bos
taurus]
gi|296470850|tpg|DAA12965.1| TPA: PABPC1L2B protein-like [Bos taurus]
gi|440892195|gb|ELR45496.1| Polyadenylate-binding protein 1-like 2 [Bos grunniens mutus]
Length = 200
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 75/144 (52%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ ++TE + E F P G + + ++K+ G+ ++Y+ D +A L
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + +++ +KNL + N+ L F FG+I V
Sbjct: 64 NFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVAC 123
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE+G K G V F ++ +A +A+
Sbjct: 124 DEKG-PKGYGFVHFQKQESAERAI 146
>gi|281212020|gb|EFA86181.1| hypothetical protein PPL_00743 [Polysphondylium pallidum PN500]
Length = 602
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 13/145 (8%)
Query: 114 CRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKM-FGFIRMDYKHNADKAKA 167
L + NI + D+ ++F +GE + N + M +GF++ A A
Sbjct: 153 TNLIINNIPKHFSSEDLRDMFANFGEIVSYKVVTKRGNSKNMGYGFVKYATPEGATAAIE 212
Query: 168 KLDGHVLKGRSLKIRFAP------INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+++GH + + LK+ +A +A + V L VT E L AF FG++ ++V
Sbjct: 213 QMNGHSIDLKFLKVSYATATSSQSTHANLYVNRLEPQVTKEDLAEAFSKFGEVVETKILV 272
Query: 222 D-ERGNSKCEGIVEFARKPAAAQAL 245
D G+S+C G V F+ + A AL
Sbjct: 273 DPNTGSSRCVGFVHFSARRNALTAL 297
>gi|426257244|ref|XP_004022242.1| PREDICTED: polyadenylate-binding protein 1-like 2 [Ovis aries]
Length = 200
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 75/144 (52%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ ++TE + E F P G + + ++K+ G+ ++Y+ D +A L
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + +++ +KNL + N+ L F FG+I V
Sbjct: 64 NFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVAC 123
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE+G K G V F ++ +A +A+
Sbjct: 124 DEKG-PKGYGFVHFQKQESAERAI 146
>gi|318087158|gb|ADV40171.1| putative polyA binding protein cytoplasmic 1 isoform 1 [Latrodectus
hesperus]
Length = 217
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 72/147 (48%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKL 169
LY+G++ D+TE + E F G + + ++ + + ++ +A++A +
Sbjct: 15 LYVGDLHNDVTEAMLFEKFSSAGPVLSIRVCRDLIARRSLGYAYVNFQQPVDAERALDTM 74
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++KGR ++I ++ + +++ +KNL + N+ + F FG+I V
Sbjct: 75 NFDMVKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKVAT 134
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE NSK G V F + AA A+++
Sbjct: 135 DEESNSKGYGFVHFETEEAANNAIQKV 161
>gi|119627672|gb|EAX07267.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_g [Homo sapiens]
Length = 338
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 75/144 (52%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V++
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVML 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
++ G SK G V F+ A +A+
Sbjct: 133 ED-GRSKGFGFVCFSSPEEATKAV 155
>gi|6754972|ref|NP_035163.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
gi|473092|emb|CAA53572.1| polyA binding protein, testis-enriched isoform [Mus musculus]
gi|29835142|gb|AAH51134.1| Poly(A) binding protein, cytoplasmic 2 [Mus musculus]
gi|148678113|gb|EDL10060.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
Length = 628
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVS 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGHGFVHFETEEAAERAIEK 157
Score = 42.0 bits (97), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K GF+ + + A++A K++G
Sbjct: 101 VFIKNLNKTIDNKALYDTFSAFGNILSCKVVSDENGSKGHGFVHFETEEAAERAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + K +KN + +E L FG FG I
Sbjct: 161 MLLNDRKVFVGRFKSQKEREAELGTGTKEFTNVYIKNFGDRMDDETLNGLFGRFGQILSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDEGGKSKGFGFVSFERHEDAQKAV 248
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G + + + LF +G+ + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 171 G------HVLKGRSLK--------------------IRFAPINAAIKVKNLTSCVTNELL 204
G H+ GR+ K IR+ IN + VKNL + +E L
Sbjct: 253 GKELNGKHIYVGRAQKKDDRHTELKHKFEQVTQDKSIRYQGIN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ F FG I V+ E G SK G V F+ A +A+
Sbjct: 311 QKEFSPFGTITSTKVMT-EGGRSKGFGFVCFSSPEEATKAV 350
>gi|218195166|gb|EEC77593.1| hypothetical protein OsI_16552 [Oryza sativa Indica Group]
Length = 659
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 73/145 (50%), Gaps = 14/145 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELF----INKEKMFGFIRMDYKHNADKAKAK--L 169
LY+G++ +T++ + ELF G+ + I+ + G+ +++ + D A+A L
Sbjct: 41 LYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALELL 100
Query: 170 DGHVLKGRSLKIRFA---PIN-----AAIKVKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ L G+ +++ ++ P + A I +KNL + ++ L F FG+I V
Sbjct: 101 NFAPLNGKPIRVMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVAT 160
Query: 222 DERGNSKCEGIVEFARKPAAAQALR 246
DE G SK G V++ + AA A++
Sbjct: 161 DEMGQSKGFGFVQYDKGEAAQSAIK 185
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 67/150 (44%), Gaps = 17/150 (11%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKHNADKAKA 167
+ +++ N+ I + + F +G + ++M FGF++ D A A
Sbjct: 126 SANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIK 185
Query: 168 KLDGHVLKGRSLKI--------RFAPINAA----IKVKNLTSCVTNELLELAFGVFGDIE 215
L+G ++ + + + R ++ + VKNL+ T E L FG +G+I
Sbjct: 186 SLNGMLINDKPVYVGPFLRKQERENSVDKTKFNNVFVKNLSESTTKEDLVKIFGAYGNIT 245
Query: 216 RAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
A+++V G S+C G + F AA+A+
Sbjct: 246 SAVIMVGMDGKSRCFGFINFKSPDDAARAV 275
Score = 38.1 bits (87), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLD 170
LY+ N+ I ++ + ELF YG+ I ++ K GF+ + A +A +++
Sbjct: 323 LYMKNLDDSIGDDQLCELFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMN 382
Query: 171 GHVLKGRSLKIRFA 184
G ++ G+ L + FA
Sbjct: 383 GKMISGKPLYVAFA 396
>gi|119596297|gb|EAW75891.1| hCG2019100, isoform CRA_e [Homo sapiens]
Length = 617
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 72/144 (50%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ +LKG+ ++I ++ + ++ +KNL + N+ L F FG+I V
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVAC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE G S+ G V F AA QA+
Sbjct: 133 DEHG-SRGFGFVHFETHEAAQQAI 155
Score = 42.0 bits (97), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 33/169 (19%)
Query: 106 KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKH 160
+ ++F N +Y+ N+ D+ E + +LF +G+ + + ++ + FGF+ +
Sbjct: 186 RALEFTN---IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHE 242
Query: 161 NADKAKAKLDGHVLKGR---------------SLKIRFAPIN---------AAIKVKNLT 196
A KA ++G + GR LK RF + + VKNL
Sbjct: 243 EAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLD 302
Query: 197 SCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ ++ L F +G I A V+ E G+SK G V F+ A +A+
Sbjct: 303 DSIDDDKLRKEFSPYGVITSAKVMT-EGGHSKGFGFVCFSSPEEATKAV 350
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + ++ FGF+ + A +A ++G
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNG 160
Query: 172 HVLKGRSLKI--------RFAPINA------AIKVKNLTSCVTNELLELAFGVFGDIERA 217
+L R + + R A + A I VKNL V + L+ F FG +
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G+S+C G V F + A +A+
Sbjct: 221 KVMRDNSGHSRCFGFVNFEKHEEAQKAV 248
>gi|149240785|ref|XP_001526223.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146450346|gb|EDK44602.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 601
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 77/154 (50%), Gaps = 20/154 (12%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYG---ETQELFINKEKM---FGFIRMDYKHNADKAK 166
N LY+GN+ +E I E+F ++ +L +K K+ + FI + +A+KA
Sbjct: 99 NKILYVGNLAKSASEEQINEIFSSVSNPIKSIKLLNDKNKLGFNYAFIEFNESEDAEKAL 158
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIK-------------VKNLTSCVTNELLELAFGVFGD 213
L+G + G +K+ +A +AAI V +L+S V +E L+ AF FG
Sbjct: 159 NSLNGKDVNGSDIKVNWAYQSAAIAGGSTPEEPSYNIFVGDLSSEVNDEALKKAFTKFGS 218
Query: 214 IERAIVIVD-ERGNSKCEGIVEFARKPAAAQALR 246
+++A V+ D + S+ G V F ++ A AL+
Sbjct: 219 LKQAHVMWDMQTSRSRGYGFVTFGKQEDAENALQ 252
>gi|224085256|ref|XP_002307525.1| predicted protein [Populus trichocarpa]
gi|222856974|gb|EEE94521.1| predicted protein [Populus trichocarpa]
Length = 614
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 73/150 (48%), Gaps = 14/150 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKAK 168
N LY+G++ ++ E + +LF + + + +++ G+ +++ + D A A
Sbjct: 22 NSSLYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDAANAM 81
Query: 169 --LDGHVLKGRSLKIRFA---PI-----NAAIKVKNLTSCVTNELLELAFGVFGDIERAI 218
L+ L G++++I + P +A + +KNL + + N+ L+ F FG +
Sbjct: 82 ELLNFTPLNGKAIRIMVSHRDPSMRKSGHANVFIKNLDTSIDNKALQETFASFGPVLSCK 141
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V VD G SK G V+F + AA A+ R
Sbjct: 142 VAVDNNGQSKGYGFVQFENEEAAQSAINRL 171
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 71/158 (44%), Gaps = 17/158 (10%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKA 167
+ +++ N+ I + E F +G + + K +GF++ + + A A
Sbjct: 110 HANVFIKNLDTSIDNKALQETFASFGPVLSCKVAVDNNGQSKGYGFVQFENEEAAQSAIN 169
Query: 168 KLDGHVLKGRSLKI-RF-----------APINAAIKVKNLTSCVTNELLELAFGVFGDIE 215
+L+G ++ + + + RF +P + VKNL+ ++E L+ F +G I
Sbjct: 170 RLNGMLINDKEVFVGRFVRHQERIEATGSPKFTNVYVKNLSETTSDEDLKKFFSNYGSIT 229
Query: 216 RAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCF 253
AIV+ D+ G SK G V F +AA A+ + F
Sbjct: 230 SAIVMKDQSGKSKGFGFVNFQSPDSAAAAVEKLNGTTF 267
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 32/166 (19%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNAD 163
KF N +Y+ N+ ++ D+ + F YG + K+ K FGF+ +A
Sbjct: 200 KFTN---VYVKNLSETTSDEDLKKFFSNYGSITSAIVMKDQSGKSKGFGFVNFQSPDSAA 256
Query: 164 KAKAKLDGHVLK------GRS---------LKIRFA--------PINAA-IKVKNLTSCV 199
A KL+G GR+ LK RF + AA + +KNL +
Sbjct: 257 AAVEKLNGTTFNDKVWYVGRAQRKGEREAELKARFEQERNSRYEKLKAANLYLKNLDDKI 316
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+E L+ F FG I V++D++G SK G V F+ A++AL
Sbjct: 317 DDEKLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRAL 362
>gi|156846854|ref|XP_001646313.1| hypothetical protein Kpol_1032p49 [Vanderwaltozyma polyspora DSM
70294]
gi|156116988|gb|EDO18455.1| hypothetical protein Kpol_1032p49 [Vanderwaltozyma polyspora DSM
70294]
Length = 580
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 76/149 (51%), Gaps = 14/149 (9%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYK-HNADK- 164
++ LY+G + ++E + ++F P G + + ++ + G+ +++ H++ K
Sbjct: 48 VDSASLYVGELDPSVSEALLYDIFSPIGPVSSIRVCRDAVTKTSLGYAYVNFNDHDSGKV 107
Query: 165 AKAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIER 216
A KL+ +KG+ +I ++ + +++ +KNL + + N+ L F VFG+I
Sbjct: 108 AIEKLNYTPIKGKPCRIMWSQRDPSMRKNGSGNIFIKNLHADIDNKALHDTFSVFGNILS 167
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ DE G SK G V F AA++A+
Sbjct: 168 CKIATDETGKSKGFGFVHFEEDTAASEAI 196
>gi|367008356|ref|XP_003678678.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
gi|359746335|emb|CCE89467.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
Length = 588
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 85/168 (50%), Gaps = 17/168 (10%)
Query: 94 PTLDLPPS--EPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM- 150
P ++ P+ EP+++ ++ ++ LY+G + ++E + ++F P G + + ++ +
Sbjct: 21 PQQNVAPASNEPESQKVE-TSSASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAIT 79
Query: 151 ---FGFIRMDYK-HNADK-AKAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTS 197
G+ +++ H A K A KL+ +KG +I ++ + +++ +KNL
Sbjct: 80 KTSLGYAYVNFNDHEAGKTAIEKLNYAPIKGVPCRIMWSQRDPSMRKKGSGNIFIKNLHP 139
Query: 198 CVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ N+ L F VFG+I + DE GNS+ G V F AA +A+
Sbjct: 140 DIDNKALHDTFSVFGNILSCKIATDEAGNSRGFGFVHFEDDEAAKEAI 187
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 68/166 (40%), Gaps = 33/166 (19%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKA 165
AN +Y+ NI D + + E F G + K+ + FGF+ + ++A KA
Sbjct: 220 ANFTNVYVKNIHPDTGDEEFEEFFTKVGPITSAHLEKDNEGKLRGFGFVNYENHNDAAKA 279
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+L+ KG++L + ++ +N + VKNL +
Sbjct: 280 VEELNETDFKGQTLHVGRAQKKHERLQELKKQYEAFRLEKLEKYQGVN--LFVKNLDDTI 337
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
++ LE F +G I V+ E G SK G V F+ A +A+
Sbjct: 338 DDQKLEEEFAPYGTITSVKVMRSENGKSKGFGFVCFSTPEEATKAI 383
>gi|334312764|ref|XP_003339775.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
1-like [Monodelphis domestica]
Length = 614
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 72/144 (50%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSAAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + ++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSGIGNIFIKNLDDSIDNKALYDTFSTFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE G S+ G V F AA QA+
Sbjct: 133 DENG-SRGFGFVHFETHEAANQAI 155
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 63/148 (42%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N + FGF+ + A++A ++G
Sbjct: 101 IFIKNLDDSIDNKALYDTFSTFGNILSCKVVCDENGSRGFGFVHFETHEAANQAINTMNG 160
Query: 172 HVLKGRSLKI--------RFAPINA------AIKVKNLTSCVTNELLELAFGVFGDIERA 217
+L R + + R A + A I VKN + +E L+ F FG
Sbjct: 161 MLLNDRKVFVGHFKSRQEREAELGARALEFTNIYVKNFEGDMDDECLQELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+VDE G S+ G V F + A +A+
Sbjct: 221 KVMVDENGQSRGFGFVNFEKHEEAQKAV 248
>gi|317106693|dbj|BAJ53194.1| JHL03K20.3 [Jatropha curcas]
Length = 642
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 77/170 (45%), Gaps = 21/170 (12%)
Query: 100 PSEPQNKDIKFANN-------CRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-- 150
P P + + A+N LY+G++ ++TE + +LF G+ + + ++
Sbjct: 8 PQGPVSAPVGMASNGGNQFVSTSLYVGDLEQNVTETQLYDLFNQLGQIVSIRVCRDLTSR 67
Query: 151 ----FGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSC 198
+G++ + H+A +A L+ + G+ ++I ++ + I+ +KNL
Sbjct: 68 RSLGYGYVNYNNVHDAAQALEVLNFTPVNGKPIRIMYSYRDPTIRKSGAGNIYIKNLDKA 127
Query: 199 VTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
+ N+ L F FG+I V D G S G V+F + +A A+ +
Sbjct: 128 IDNKALHDTFSAFGNILSCKVATDSAGQSLGYGFVQFDNEESAKNAIDKL 177
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 25/151 (16%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKHNADKAKAKLD 170
+Y+ N+ I + + F +G + + +GF++ D + +A A KL+
Sbjct: 119 IYIKNLDKAIDNKALHDTFSAFGNILSCKVATDSAGQSLGYGFVQFDNEESAKNAIDKLN 178
Query: 171 GHVLKGRSL----------------KIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDI 214
G +L + + K +F + VKNL+ T E L+ FG +G I
Sbjct: 179 GMLLNDKQVYVGPFLRRQERESGTDKTKFN----NVYVKNLSETTTEEDLKKIFGEYGAI 234
Query: 215 ERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
A+V+ D G S+C G V F AA+++
Sbjct: 235 TSAVVMRDGDGKSRCFGFVNFENPDDAARSV 265
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 36/168 (21%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNAD 163
KF N +Y+ N+ TE D+ ++F YG + K + FGF+ + +A
Sbjct: 206 KFNN---VYVKNLSETTTEEDLKKIFGEYGAITSAVVMRDGDGKSRCFGFVNFENPDDAA 262
Query: 164 KAKAKLDGHV--------------------LKGR---SLK---IRFAPINAAIKVKNLTS 197
++ L+G LKG+ +LK +F +N + VKNL
Sbjct: 263 RSVEALNGKTFDEKEWYVGKAQKKSEREVELKGQFEQTLKETVDKFEGLN--LYVKNLDD 320
Query: 198 CVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+T++ L+ F FG I V+ D G SK G V ++ A++AL
Sbjct: 321 SITDDKLKELFSEFGTITSCKVMRDPNGVSKGSGFVAYSTAEEASKAL 368
>gi|197097606|ref|NP_001126097.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|55730342|emb|CAH91893.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + + L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDIKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
Score = 42.7 bits (99), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + + A++A K++G
Sbjct: 101 IFIKNLDKSIDIKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + +E L+ FG FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAV 248
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + +LF +G + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
>gi|71745214|ref|XP_827237.1| polyadenylate-binding protein 1 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70831402|gb|EAN76907.1| polyadenylate-binding protein 1, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261331451|emb|CBH14445.1| PABP1 [Trypanosoma brucei gambiense DAL972]
Length = 566
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 18/163 (11%)
Query: 100 PSEPQ-NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FG 152
PS P K ++ A+ LY+G++ I E ++++FKPYG + + ++ + +G
Sbjct: 9 PSGPSATKPLQVAS---LYVGDLDPAINEPQLVDIFKPYGTILNVRVCRDIITQRSLGYG 65
Query: 153 FIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELL 204
++ D ++A KA +L+ + + ++I + + A++ VKNL V + L
Sbjct: 66 YVNYDDVNSASKAMEELNFKRVGEKCIRIMWQQRDPALRYSGSGNIFVKNLKEEVDSREL 125
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRR 247
L F FG+I V+ DE G S+ G V F AA A+ +
Sbjct: 126 SLIFKKFGEILSCKVMDDESGKSRGYGFVHFKDDDAAKAAIEK 168
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLD 170
LY+ N + TE D+ ELFK YG + + + + FGF+ + A+ A +++
Sbjct: 305 LYVRNFDAEFTEKDLNELFKEYGVIRSCRVMTDANGISRGFGFVSFENADQANAALREMN 364
Query: 171 GHVLKGRSLKIRFA 184
G +L G+ L + A
Sbjct: 365 GRMLNGKPLVVNIA 378
>gi|6102944|emb|CAB59276.1| hypothetical protein [Homo sapiens]
Length = 367
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 72/164 (43%), Gaps = 30/164 (18%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKA 165
A +++ NIG DI + + ELF YG T+ + + K K FGF+R + A KA
Sbjct: 181 ATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKA 240
Query: 166 KAKLDGHVLKGRSLKI--------RFA----------------PINAAIKVKNLTSCVTN 201
L G + G+ L + R A P I +KNL + +
Sbjct: 241 VLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIND 300
Query: 202 ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
E L+ F FG I RA V++ E G K G+V F+ A +A+
Sbjct: 301 EKLKEEFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAV 343
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 70/144 (48%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKL 169
LY+G++ D+TE+ + + F+P G + I ++ + +G++ + +A+ A +
Sbjct: 5 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 64
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++ G+ ++ ++ + ++ +KNL + N L F FG+I V+
Sbjct: 65 NFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVC 124
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
D+ G SK V F AA +A+
Sbjct: 125 DDNG-SKGYAYVHFDSLAAANRAI 147
>gi|296235923|ref|XP_002763106.1| PREDICTED: polyadenylate-binding protein 5 [Callithrix jacchus]
gi|14571652|emb|CAC42812.1| Poly(A)-binding protein cytoplasmic 5 [Callithrix jacchus]
Length = 382
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 72/164 (43%), Gaps = 30/164 (18%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKA 165
A +++ NIG DI + + ELF YG T+ + + K K FGF+R + A KA
Sbjct: 196 ATFTNVFVKNIGEDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKA 255
Query: 166 KAKLDGHVLKGRSLKI--------RFA----------------PINAAIKVKNLTSCVTN 201
L G + G+ L + R A P I +KNL + +
Sbjct: 256 VLDLHGKSVDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIND 315
Query: 202 ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
E L+ F FG I RA V++ E G K G+V F+ A +A+
Sbjct: 316 EKLKEEFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAV 358
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 68/142 (47%), Gaps = 15/142 (10%)
Query: 118 LGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKLDG 171
+G++ D+TE+ + + F+P G + I ++ + +G++ + +A+ A ++
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 172 HVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIVDE 223
++ G+ ++ ++ + ++ +KNL + N L F FG+I V+ D+
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 224 RGNSKCEGIVEFARKPAAAQAL 245
G SK V F AA +A+
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAI 162
>gi|432097499|gb|ELK27684.1| Polyadenylate-binding protein 4-like protein [Myotis davidii]
Length = 370
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 77/144 (53%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TEN + F G + I ++ + G+ +++ H AD +A +
Sbjct: 12 LYVGDLPPDVTENMLFLKFSTVGTVLSIRICRDLVTRCSLGYAYVNFLHVADAQRALDTM 71
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V++G+S+++ ++ +A ++ +KNL + N+ L F VFG I + V+
Sbjct: 72 NFDVIQGQSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSVFGKILSSKVMC 131
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
D++G S+ G V F + AA +A+
Sbjct: 132 DDQG-SRGYGFVHFQNQAAADRAI 154
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 76/174 (43%), Gaps = 33/174 (18%)
Query: 101 SEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIR 155
+E QNK +F N +Y+ N G ++ + + E F YG+ + + K K FGF+
Sbjct: 180 AELQNKASEFTN---IYIKNFGDEMDDEKLKEFFSHYGKIVSVKVMTDSSGKSKGFGFVS 236
Query: 156 MDYKHNADKAKAKLDG------HVLKGRSLKI--RFAPIN----------------AAIK 191
D A +A ++G V GR+ K R A + I
Sbjct: 237 FDTHEAAKRAVDIVNGREIFGQQVFVGRAQKKAERQAELKQLFEQRKQERSWRVRGTKIY 296
Query: 192 VKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
VKNL + E L AF FG I R + ++ E G S+ G++ F+ AA+A+
Sbjct: 297 VKNLDETIDEEKLRKAFSSFGSIIR-VKVMQEEGRSRGFGLICFSSPEEAARAM 349
>gi|395645925|ref|ZP_10433785.1| RNP-1 like RNA-binding protein [Methanofollis liminatans DSM 4140]
gi|395442665|gb|EJG07422.1| RNP-1 like RNA-binding protein [Methanofollis liminatans DSM 4140]
Length = 86
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGH 172
RLY+GN+ +TE + ELF YG+ + + I +K FGF+ M A+KAK L+
Sbjct: 3 TSRLYVGNLTYSVTEKQLEELFSQYGDVKSVKIIGDKGFGFVEMGSPEEAEKAKEALNET 62
Query: 173 VLKGRSLKI 181
V GR+L+I
Sbjct: 63 VFVGRTLRI 71
>gi|160333518|ref|NP_001103836.1| poly A binding protein, cytoplasmic 5 [Rattus norvegicus]
gi|149055477|gb|EDM07061.1| rCG38154 [Rattus norvegicus]
Length = 382
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 30/164 (18%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKA 165
A +++ N G DI + + +LF YG T+ + + K K FGF+R + A KA
Sbjct: 196 ATFTNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKA 255
Query: 166 KAKLDGHVLKGRSLKI---------------RFA---------PINAAIKVKNLTSCVTN 201
+L G + G+ L + RF P I +KNL + +
Sbjct: 256 VLELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKDKTRPPGVPIYIKNLDETIND 315
Query: 202 ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
E L+ F +FG I RA V++ E G K G+V F+ A++A+
Sbjct: 316 EKLKEEFSLFGSISRAKVMM-EVGQGKGFGVVCFSSFEEASKAV 358
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 68/142 (47%), Gaps = 15/142 (10%)
Query: 118 LGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKLDG 171
+G++ D+TE+ + + F+P G + I ++ + +G++ + +A+ A ++
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 172 HVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIVDE 223
++ G+ ++ ++ + ++ +KNL + N L F FG+I V+ D+
Sbjct: 82 DLINGKPFRLMWSQPDDHLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 224 RGNSKCEGIVEFARKPAAAQAL 245
G SK V F AA +A+
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAI 162
>gi|297802580|ref|XP_002869174.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297315010|gb|EFH45433.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 625
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 74/150 (49%), Gaps = 14/150 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGET------QELFINKEKMFGFIRMDYKHNADKAK 166
LY+G++ ++T++ + + F G ++L + +G++ +A +A
Sbjct: 35 TTSLYVGDLDVNVTDSQLFDAFSQMGPVVSVRVCRDLATRRSLGYGYVNFTNPQDAARAI 94
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
+L+ L G+ +++ ++ + +++ +KNL + ++ L F VFG+I
Sbjct: 95 QELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSVFGNIVSCK 154
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V VD G SK G V++A + +A +A+ +
Sbjct: 155 VAVDSSGQSKGYGFVQYANEESAQKAIEKL 184
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 32/170 (18%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNAD 163
KF N +Y+ N+ T++D+ F YG+ + K+ K FGF+ + +A
Sbjct: 213 KFTN---VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGDGKSKGFGFVNFENADDAA 269
Query: 164 KAKAKLDGHVLK------GRS---------LKIRFAP---------INAAIKVKNLTSCV 199
+A L+GH GR+ L++R+ ++ + VKNL +
Sbjct: 270 RAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSI 329
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCA 249
++E L+ F FG + V+ D G SK G V F+ A +A+ + +
Sbjct: 330 SDEKLKEIFSPFGTVTSCKVMRDPNGTSKGSGFVAFSTPEEATEAMSQLS 379
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 17/147 (11%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + + F +G + + K +GF++ + +A KA KL+
Sbjct: 126 IFIKNLDESIDHKALHDTFSVFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLN 185
Query: 171 GHVLKGRSLKI--------RFAPINAA----IKVKNLTSCVTNELLELAFGVFGDIERAI 218
G +L + + + R + N + VKNL T++ L+ AFG +G I A+
Sbjct: 186 GMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAV 245
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V F AA+A+
Sbjct: 246 VMKDGDGKSKGFGFVNFENADDAARAV 272
>gi|449432502|ref|XP_004134038.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
gi|449487476|ref|XP_004157645.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 276
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 18/156 (11%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYG--ETQELFIN----KEKMFGFIRMDYKHNADKAK 166
+ +LY GN+ + + + + + YG E E+ + K + F F+ M + +K
Sbjct: 101 STKLYFGNLPYSVDSSQLAAIVQDYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVI 160
Query: 167 AKLDGHVLKGRSLKIRFA-------PINAAIKVK----NLTSCVTNELLELAFGVFGDIE 215
LDG GR L++ F+ P+ + K NL+ VT+E+L AF +G++
Sbjct: 161 ENLDGSAYMGRILRVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVV 220
Query: 216 RAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAE 250
A VI D E G S+ G V ++ K AL E
Sbjct: 221 GARVIYDGETGKSRGYGFVSYSTKSEMETALETINE 256
>gi|194672643|ref|XP_882298.3| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 19
[Bos taurus]
gi|297482024|ref|XP_002692514.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Bos taurus]
gi|296480945|tpg|DAA23060.1| TPA: polyadenylate-binding protein 1-like [Bos taurus]
Length = 613
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 72/144 (50%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + ++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE G S+ G V F AA A+
Sbjct: 133 DEHG-SRGFGFVHFETHEAAQNAI 155
Score = 42.0 bits (97), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 73/171 (42%), Gaps = 37/171 (21%)
Query: 106 KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKH 160
+ ++F N +Y+ N+ D+ E + +LF +G+ + + ++ FGF+ +
Sbjct: 186 RAMEFTN---IYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHE 242
Query: 161 NADKAKAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKN 194
A KA ++G + GR L + R+ +N + VKN
Sbjct: 243 EAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVN--LYVKN 300
Query: 195 LTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
L + +E L F +G I A V+ E G+SK G V F+ A +A+
Sbjct: 301 LDDSIDDEKLRKEFSPYGVITSAKVMT-EGGHSKGFGFVCFSSPEEATKAV 350
>gi|194386842|dbj|BAG59787.1| unnamed protein product [Homo sapiens]
Length = 350
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 72/164 (43%), Gaps = 30/164 (18%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKA 165
A +++ NIG DI + + ELF YG T+ + + K K FGF+R + A KA
Sbjct: 164 ATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKA 223
Query: 166 KAKLDGHVLKGRSLKI--------RFA----------------PINAAIKVKNLTSCVTN 201
L G + G+ L + R A P I +KNL + +
Sbjct: 224 VLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIND 283
Query: 202 ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
E L+ F FG I RA V++ E G K G+V F+ A +A+
Sbjct: 284 EKLKEEFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAV 326
>gi|255652857|ref|NP_001157308.1| poly(A) binding protein, cytoplasmic 3 [Mus musculus]
gi|12855391|dbj|BAB30319.1| unnamed protein product [Mus musculus]
gi|26325704|dbj|BAC26606.1| unnamed protein product [Mus musculus]
Length = 643
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 77/146 (52%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKH--NADKAKAKL 169
LY+G++ D+TE + E F P G + + ++++ G+ ++++ +A++A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ VKNL + ++ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + A +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEEAERAIEK 157
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + + A++A K++G
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEEAERAIEKMNG 160
Query: 172 HVL--------KGRSLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
L + +S + R A + A K +KNL + +E L+ FG FG
Sbjct: 161 MFLNDHKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFGRFGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDARKAV 248
>gi|126649325|ref|XP_001388334.1| poly(a)-binding protein fabm [Cryptosporidium parvum Iowa II]
gi|32398879|emb|CAD98589.1| putative poly(a)-binding protein fabm, possible [Cryptosporidium
parvum]
gi|126117428|gb|EAZ51528.1| poly(a)-binding protein fabm, putative [Cryptosporidium parvum Iowa
II]
Length = 746
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 14/150 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA- 167
+ LY+G++ D+TE + E+F + I ++ + G+ ++Y AD +A
Sbjct: 11 SASLYVGDLDADVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERAL 70
Query: 168 -KLDGHVLKGRSLKIRFAPINAA--------IKVKNLTSCVTNELLELAFGVFGDIERAI 218
L+ ++GR +I + + A + VKNL + N+ L F +FG+I
Sbjct: 71 DTLNFTCIRGRPCRIMWCLRDPASRRNNDGNVFVKNLDKSIDNKTLFDTFSLFGNIMSCK 130
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALRRC 248
+ D G S G + F +A +A+ R
Sbjct: 131 IATDVEGKSLGYGFIHFEHADSAKEAISRL 160
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 81/187 (43%), Gaps = 31/187 (16%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAK 166
N+ +++ N+ I + + F +G I K +GFI ++ +A +A
Sbjct: 98 NDGNVFVKNLDKSIDNKTLFDTFSLFGNIMSCKIATDVEGKSLGYGFIHFEHADSAKEAI 157
Query: 167 AKLDGHVLKGRSLKI--------RFAPINAA---IKVKNLTSCVTNELLELAFGVFGDIE 215
++L+G VL R + + RF+ + + VK++ T +LL FGV+G I
Sbjct: 158 SRLNGAVLGDRPIYVGKFQKKAERFSEKDKTFTNVYVKHIPKSWTEDLLYKIFGVYGKIS 217
Query: 216 RAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDG 275
++ D +G + G V F +A A+ +L +V P+ + E+D
Sbjct: 218 SLVLQSDSKG--RPFGFVNFENPDSAKAAV-----------AALHNALVTPVGV--ELDS 262
Query: 276 LSERTIN 282
+E ++
Sbjct: 263 TAETPVD 269
>gi|67623121|ref|XP_667843.1| poly(a)-binding protein fabm [Cryptosporidium hominis TU502]
gi|54659004|gb|EAL37605.1| poly(a)-binding protein fabm [Cryptosporidium hominis]
Length = 746
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 14/150 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA- 167
+ LY+G++ D+TE + E+F + I ++ + G+ ++Y AD +A
Sbjct: 11 SASLYVGDLDADVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERAL 70
Query: 168 -KLDGHVLKGRSLKIRFAPINAA--------IKVKNLTSCVTNELLELAFGVFGDIERAI 218
L+ ++GR +I + + A + VKNL + N+ L F +FG+I
Sbjct: 71 DTLNFTCIRGRPCRIMWCLRDPASRRNNDGNVFVKNLDKSIDNKTLFDTFSLFGNIMSCK 130
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALRRC 248
+ D G S G + F +A +A+ R
Sbjct: 131 IATDVEGKSLGYGFIHFEHADSAKEAISRL 160
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 18/150 (12%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAK 166
N+ +++ N+ I + + F +G I K +GFI ++ +A +A
Sbjct: 98 NDGNVFVKNLDKSIDNKTLFDTFSLFGNIMSCKIATDVEGKSLGYGFIHFEHADSAKEAI 157
Query: 167 AKLDGHVLKGRSLKI--------RFAPINAA---IKVKNLTSCVTNELLELAFGVFGDIE 215
++L+G VL R + + RF+ + + VK++ T +LL FGV+G I
Sbjct: 158 SRLNGAVLGDRPIYVGKFQKKAERFSEKDKTFTNVYVKHIPKSWTEDLLYKIFGVYGKIS 217
Query: 216 RAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
++ D +G + G V F +A A+
Sbjct: 218 SLVLQSDSKG--RPFGFVNFENPDSAKAAV 245
>gi|326516828|dbj|BAJ96406.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 744
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 14/146 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ + + + ++F G + + ++ K G+ ++Y AD A+A L
Sbjct: 127 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 186
Query: 170 DGHVLKGRSLKIRFA---PI-----NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ + GR ++I ++ P A I +KNL + N+ L F VFG+I V
Sbjct: 187 NFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVAT 246
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
D G SK G V++ R AA A+ +
Sbjct: 247 DPAGESKGYGFVQYERDEAAHAAIEK 272
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 69/167 (41%), Gaps = 32/167 (19%)
Query: 108 IKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNA 162
+KF N +Y+ N+ TE+D+ E+F +G + + ++ K FGF+ + A
Sbjct: 301 VKFNN---VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEA 357
Query: 163 DKAKAKLDGHVLK------GRS---------LKIRFAP---------INAAIKVKNLTSC 198
A L+G GR+ LK +F N + +KNL
Sbjct: 358 ALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDT 417
Query: 199 VTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
V +E L F FG I V+ D G S+ G V F A++AL
Sbjct: 418 VDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRAL 464
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 69/162 (42%), Gaps = 21/162 (12%)
Query: 104 QNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDY 158
++ ++ + +++ N+ I + + F +G + + K +GF++ +
Sbjct: 203 RDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYER 262
Query: 159 KHNADKAKAKLDGHVLKGRSLKIRFAPI-------NAA-------IKVKNLTSCVTNELL 204
A A KL+G ++ + K+ P N+ + VKNL T + L
Sbjct: 263 DEAAHAAIEKLNGMLMNDK--KVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDL 320
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALR 246
+ FG FG I +V+ D G SKC G V F AA A++
Sbjct: 321 KEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQ 362
>gi|392346932|ref|XP_230831.6| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Rattus
norvegicus]
Length = 609
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 75/144 (52%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E+F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++KG+ ++I ++ + ++ +KNL + + N+ L F FG I + V+
Sbjct: 73 NFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVY 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
+E G S+ G V F AA +A+
Sbjct: 133 NEHG-SRGFGFVHFETHEAAQKAI 155
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 71/161 (44%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLD 170
+Y+ N+ D+ E + +LF +G+TQ + + ++ + FGFI + A KA ++
Sbjct: 193 IYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+ L + R+ +N + VKNL + ++ L
Sbjct: 253 GKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVN--LYVKNLDDSINDDRL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ F +G I A V+ E +SK G V F+ A +A+
Sbjct: 311 KEVFSTYGVITSAKVMT-ESSHSKGFGFVCFSSPEEATKAV 350
>gi|383862671|ref|XP_003706807.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3
[Megachile rotundata]
Length = 601
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 74/147 (50%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ DITE + E F G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++KGR ++I ++ + +++ +KNL + N+ + F FG+I V
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQ 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE G SK G V F + AA +++ +
Sbjct: 133 DESGVSKGYGFVHFETEEAANKSIDKV 159
Score = 42.4 bits (98), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 102 EPQNKDIKFANNCRLY-LGNIGGDITENDIIELFKPYGE--TQELFIN---KEKMFGFIR 155
E NK I N L N G D+T++ + E+F+ YG + ++ I K + FGF+
Sbjct: 150 EAANKSIDKVNGMLLNGKKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVA 209
Query: 156 MDYKHNADKAKAKLDG-HVLKGRSLKI--------------------------RFAPINA 188
+ A++A +L+G V +G+ + + R+ +N
Sbjct: 210 FEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLSRYQGVN- 268
Query: 189 AIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ VKNL + +E L F FG I A V++++ G SK G V F+ A +A+
Sbjct: 269 -LYVKNLDDSINDERLRREFAPFGTITSAKVMMED-GRSKGFGFVCFSAPEEATKAV 323
>gi|426242065|ref|XP_004014898.1| PREDICTED: polyadenylate-binding protein 1-like [Ovis aries]
Length = 611
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 72/144 (50%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLPPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + ++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE G S+ G V F AA A+
Sbjct: 133 DEHG-SRGFGFVHFETHEAAQNAI 155
Score = 41.6 bits (96), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 73/171 (42%), Gaps = 37/171 (21%)
Query: 106 KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKH 160
+ ++F N +Y+ N+ D+ E + +LF +G+ + + ++ FGF+ +
Sbjct: 186 RAMEFTN---IYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHE 242
Query: 161 NADKAKAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKN 194
A KA ++G + GR L + R+ +N + VKN
Sbjct: 243 EAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVN--LYVKN 300
Query: 195 LTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
L + +E L F +G I A V+ E G+SK G V F+ A +A+
Sbjct: 301 LDDSIDDEKLRKEFSPYGVITSAKVMT-EGGHSKGFGFVCFSSPEEATKAV 350
>gi|148670144|gb|EDL02091.1| RIKEN cDNA 4932702K14 [Mus musculus]
Length = 642
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 77/146 (52%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKH--NADKAKAKL 169
LY+G++ D+TE + E F P G + + ++++ G+ ++++ +A++A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ VKNL + ++ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + A +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEEAERAIEK 157
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + + A++A K++G
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEEAERAIEKMNG 160
Query: 172 HVL--------KGRSLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
L + +S + R A + A K +KNL + +E L+ FG FG
Sbjct: 161 MFLNDHKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFGRFGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDARKAV 248
>gi|449302198|gb|EMC98207.1| hypothetical protein BAUCODRAFT_416441 [Baudoinia compniacensis
UAMH 10762]
Length = 479
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLK 175
Y+GN+ T+ND++ LF+ +G E + ++ F F++MD NA A +L G+ +
Sbjct: 302 CYVGNLTPYTTQNDLVPLFQNFGYVTETRFHSDRGFAFVKMDTHENAANAICQLSGYNVN 361
Query: 176 GRSLKIRF 183
GR LK +
Sbjct: 362 GRPLKCSW 369
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 73/153 (47%), Gaps = 19/153 (12%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMF-------GFIRMDYKHNADK 164
N LY+G + +TE+ + ++F+ G Q + I +K F GF+ D A++
Sbjct: 80 NKRALYVGGLDPRVTEDVLKQIFETTGHVQSVKIIPDKNFQSKGYNYGFVEYDDPQCAER 139
Query: 165 AKAKLDGHVLKGRSLKIRFAPINAAIK-----------VKNLTSCVTNELLELAFGVFGD 213
A L+G + + +++ +A + I V +L++ V +E+L AF FG
Sbjct: 140 AMQTLNGRRVHQQEIRVNWAYQSNTISKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGT 199
Query: 214 IERAIVIVDER-GNSKCEGIVEFARKPAAAQAL 245
+ A V+ D + G S+ G V F + A +AL
Sbjct: 200 VSEARVMWDMKTGRSRGYGFVSFRDRGDAEKAL 232
>gi|431896963|gb|ELK06227.1| Ribonucleoprotein PTB-binding 2 [Pteropus alecto]
Length = 593
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 69/137 (50%), Gaps = 2/137 (1%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168
+ +N ++ + N+ D + ++ +L + Y E + ++++ K F+ + A A
Sbjct: 4 ELSNRRKILVKNLPQDCSCQEVHDLLQDY-ELKYCYVDRNKRTAFVTLLNGEQAQNAIQM 62
Query: 169 LDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGNS 227
+ +G+ L ++ P +A + + NL + T E E +G+IER ++ E G+S
Sbjct: 63 FHQYSFRGKDLIVQLQPTDALLCITNLPTSFTLEEFEELVRAYGNIERCFLVYSEVTGHS 122
Query: 228 KCEGIVEFARKPAAAQA 244
K G VE+ +K AA+A
Sbjct: 123 KGYGFVEYMKKDFAAKA 139
>gi|70663933|emb|CAE02947.3| OSJNBa0014K14.19 [Oryza sativa Japonica Group]
Length = 657
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 73/145 (50%), Gaps = 14/145 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELF----INKEKMFGFIRMDYKHNADKAKAK--L 169
LY+G++ +T++ + ELF G+ + I+ + G+ +++ + D A+A L
Sbjct: 41 LYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALELL 100
Query: 170 DGHVLKGRSLKIRFA---PIN-----AAIKVKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ L G+ +++ ++ P + A I +KNL + ++ L F FG+I V
Sbjct: 101 NFAPLNGKPIRVMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVAT 160
Query: 222 DERGNSKCEGIVEFARKPAAAQALR 246
DE G SK G V++ + AA A++
Sbjct: 161 DEMGQSKGFGFVQYDKGEAAQSAIK 185
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 67/150 (44%), Gaps = 17/150 (11%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKHNADKAKA 167
+ +++ N+ I + + F +G + ++M FGF++ D A A
Sbjct: 126 SANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIK 185
Query: 168 KLDGHVLKGRSLKI--------RFAPINAA----IKVKNLTSCVTNELLELAFGVFGDIE 215
L+G ++ + + + R ++ + VKNL+ T E L FG +G+I
Sbjct: 186 SLNGMLINDKPVYVGPFLRKQERENSVDKTKFNNVFVKNLSESTTKEDLVKIFGAYGNIT 245
Query: 216 RAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
A+++V G S+C G + F AA+A+
Sbjct: 246 SAVIMVGMDGKSRCFGFINFKSPDDAARAV 275
>gi|68070939|ref|XP_677383.1| polyadenylate-binding protein [Plasmodium berghei strain ANKA]
gi|56497479|emb|CAH95361.1| polyadenylate-binding protein, putative [Plasmodium berghei]
Length = 833
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 23/172 (13%)
Query: 91 IQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-- 148
I T +PPS F+ LY+G++ D+TE + E+F G + + ++
Sbjct: 2 IANSTNIMPPS--------FST-ASLYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSV 52
Query: 149 --KMFGFIRMDYKHNADKAKA--KLDGHVLKGRSLKIRFAPINAAIK--------VKNLT 196
K G+ ++Y + AD +A L+ +KG+ ++ ++ + +++ VKNL
Sbjct: 53 TRKSLGYAYVNYHNLADAERALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLD 112
Query: 197 SCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
+ N+ L F +FG+I V DE G SK G V + + +A +A+ +
Sbjct: 113 KTIDNKALFDTFSMFGNILSCKVATDEFGKSKNYGFVHYEDEESAKEAIEKV 164
Score = 42.0 bits (97), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 101 SEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI---NKEKMFGFIRMD 157
SE D KF N LY+ N +TE + +LF PYGE + + NK + F FI
Sbjct: 183 SERATNDTKFTN---LYVKNFPDTVTEAHLKQLFSPYGEITSMIVKSDNKNRKFCFINYS 239
Query: 158 YKHNADKAKAKLDG 171
+A A L+G
Sbjct: 240 DADSARNAMENLNG 253
>gi|324509105|gb|ADY43836.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 661
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 74/147 (50%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F G + + ++ + G+ ++++ AD +A +
Sbjct: 21 LYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDTM 80
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+ G+ ++I ++ + +++ +KNL + N+ + F +FG+I V
Sbjct: 81 NFDVMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNILSCKVAN 140
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE NSK G V F + +A +A+ +
Sbjct: 141 DEESNSKGYGFVHFETEESAQKAIEKV 167
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 19/154 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I I + F +G + + K +GF+ + + +A KA K++
Sbjct: 109 IFIKNLDKSIDNKAIYDTFSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVN 168
Query: 171 GHVLKGRSLKI-RFAPINAAIK-------------VKNLTSCVTNELLELAFGVFGDIER 216
G +L+G+ + + +F P A ++ +KN + E LE F FG I
Sbjct: 169 GMLLEGKKVYVGKFQPRAARMREMGETARRFTNVFIKNFADELDKEKLEKLFAKFGKITS 228
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQALRRCAE 250
V+ D G SK G V F A +A+ E
Sbjct: 229 CAVMSDADGKSKGFGFVAFENPEDAEKAVNEMHE 262
>gi|240256156|ref|NP_195137.5| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
gi|1171978|sp|P42731.1|PABP2_ARATH RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2
gi|304109|gb|AAA61780.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|2911051|emb|CAA17561.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|7270360|emb|CAB80128.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|26983870|gb|AAN86187.1| putative polyadenylate-binding protein 2 (PABP2) [Arabidopsis
thaliana]
gi|332660925|gb|AEE86325.1| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
Length = 629
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 74/150 (49%), Gaps = 14/150 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGET------QELFINKEKMFGFIRMDYKHNADKAK 166
N LY+G++ ++T++ + + F G ++L + +G++ +A +A
Sbjct: 35 NTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAI 94
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
+L+ L G+ +++ ++ + +++ +KNL + ++ L F FG+I
Sbjct: 95 QELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCK 154
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V VD G SK G V++A + +A +A+ +
Sbjct: 155 VAVDSSGQSKGYGFVQYANEESAQKAIEKL 184
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 76/170 (44%), Gaps = 32/170 (18%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNAD 163
KF N +Y+ N+ T++D+ F YG+ + K+ K FGF+ + +A
Sbjct: 213 KFTN---VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAA 269
Query: 164 KAKAKLDGHVLK------GRS---------LKIRFAP---------INAAIKVKNLTSCV 199
+A L+GH GR+ L++R+ ++ + VKNL +
Sbjct: 270 RAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSI 329
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCA 249
++E L+ F FG + + V+ D G SK G V FA A +A+ + +
Sbjct: 330 SDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLS 379
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 17/147 (11%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + + F +G + + K +GF++ + +A KA KL+
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLN 185
Query: 171 GHVLKGRSLKI--------RFAPINAA----IKVKNLTSCVTNELLELAFGVFGDIERAI 218
G +L + + + R + N + VKNL T++ L+ AFG +G I A+
Sbjct: 186 GMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAV 245
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V F AA+A+
Sbjct: 246 VMKDGEGKSKGFGFVNFENADDAARAV 272
>gi|17567133|ref|NP_510260.1| Protein PAB-2, isoform a [Caenorhabditis elegans]
gi|3876085|emb|CAA90444.1| Protein PAB-2, isoform a [Caenorhabditis elegans]
Length = 692
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 19/162 (11%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKA 165
A N +++ N+ I + + F +G + + K +GF+ + +H+A A
Sbjct: 142 AGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTA 201
Query: 166 KAKLDGHVLKGRSLKI-RFAPINAAIK-------------VKNLTSCVTNELLELAFGVF 211
K++G +L + + + +F P +K VKN + E L F F
Sbjct: 202 IEKVNGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKF 261
Query: 212 GDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCF 253
G+I A+V+ D +G K G V FA + AA QA+ + +
Sbjct: 262 GEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSIL 303
>gi|426391820|ref|XP_004062264.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Gorilla
gorilla gorilla]
Length = 614
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 72/144 (50%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ +LKG+ ++I ++ + ++ +KNL + N+ L F FG+I V
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVAC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE G S+ G V F AA QA+
Sbjct: 133 DEHG-SRGFGFVHFETHEAAQQAI 155
Score = 41.6 bits (96), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 33/169 (19%)
Query: 106 KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKH 160
+ ++F N +Y+ N+ D+ E + +LF +G+ + + ++ + FGF+ +
Sbjct: 186 RALEFTN---IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHE 242
Query: 161 NADKAKAKLDGHVLKGR---------------SLKIRFAPIN---------AAIKVKNLT 196
A KA ++G + GR LK RF + + VKNL
Sbjct: 243 EAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLD 302
Query: 197 SCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ ++ L F +G I A V+ E G+SK G V F+ A +A+
Sbjct: 303 DSIDDDKLRKEFSPYGVITSAKVMT-EGGHSKGFGFVCFSSPEEATKAV 350
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + ++ FGF+ + A +A ++G
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNG 160
Query: 172 HVLKGRSLKI--------RFAPINA------AIKVKNLTSCVTNELLELAFGVFGDIERA 217
+L R + + R A + A I VKNL V + L+ F FG +
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G+S+C G V F + A +A+
Sbjct: 221 KVMRDNSGHSRCFGFVNFEKHEEAQKAV 248
>gi|307095208|gb|ADN29910.1| poly A binding protein cytoplasmic 1 isoform 1-like protein
[Triatoma matogrossensis]
Length = 341
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 74/147 (50%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+T+ + E F G + + K+ + G+ ++++ AD +A +
Sbjct: 15 LYVGDLHSDVTKAMLFEKFSSAGPVLSIRVCKDMITRRSLGYAYVNFQQPADAERALDTM 74
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ LKGR ++I ++ + +++ +KNL + N+ + F FG+I V
Sbjct: 75 NFDTLKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQ 134
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE G+SK G V F + AA +++ +
Sbjct: 135 DESGSSKGYGFVHFETEEAATKSIDKV 161
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 34/141 (24%)
Query: 116 LYLGNIGGDITENDIIELFKPYG--ETQELFINKEKM---FGFIRMDYKHNADKAKAKLD 170
+Y+ N G D T++ + E+F+ YG + + +NK++ FGF+ + A++A L+
Sbjct: 196 VYVKNFGEDFTDDMLKEMFEKYGPITSHTVVVNKDQKSRGFGFVAFEDPEAAERAVEDLN 255
Query: 171 G-HVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNEL 203
G +++G+ L + R+ +N + VKNL + +E
Sbjct: 256 GKEIIEGKQLYVGRAQKKAERQQELKRKFEQLKMERMNRYQGVN--LYVKNLDDTIDDER 313
Query: 204 LELAFGVFGDIERAIVIVDER 224
L F FG I A V+++ER
Sbjct: 314 LRKEFSPFGTITSAKVMLEER 334
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 68/149 (45%), Gaps = 19/149 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLD 170
+++ N+ +I + + F +G + ++ K +GF+ + + A K+ K++
Sbjct: 103 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGSSKGYGFVHFETEEAATKSIDKVN 162
Query: 171 GHVLKGRSLKI-RFAP-------------INAAIKVKNLTSCVTNELLELAFGVFGDIER 216
G +L G+ + + +F P + + VKN T+++L+ F +G I
Sbjct: 163 GMLLNGKKVFVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDFTDDMLKEMFEKYGPITS 222
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+V++ S+ G V F AA +A+
Sbjct: 223 HTVVVNKDQKSRGFGFVAFEDPEAAERAV 251
>gi|336364894|gb|EGN93247.1| hypothetical protein SERLA73DRAFT_172163 [Serpula lacrymans var.
lacrymans S7.3]
Length = 684
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 71/145 (48%), Gaps = 14/145 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KAKAKL 169
LY+G + +TE + E+F G + + ++ + G+ ++Y + +D +A +L
Sbjct: 46 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNTSDGERALEQL 105
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++K R+ +I ++ + A++ +KNL + N+ L F FG++ V
Sbjct: 106 NYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVAT 165
Query: 222 DERGNSKCEGIVEFARKPAAAQALR 246
DE G SK G V + AA A++
Sbjct: 166 DEHGRSKGYGFVHYETGEAAETAIK 190
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 65/164 (39%), Gaps = 29/164 (17%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKA 165
A LY+ N+ +T+++ E+F+ YG + + K FGF+ ++ A A
Sbjct: 222 AQFTNLYIKNLDTSVTQDEFEEMFQKYGNVTSAIVQVDEEGNSKGFGFVNYEHHEEAQSA 281
Query: 166 KAKLDGHVLKGRSLKIRFAPINAA------------------------IKVKNLTSCVTN 201
L ++G+ L + A A + +KNL V +
Sbjct: 282 VDALHDTDIRGKKLFVSRAQKKAEREEELRRSYEQAKMEKLSKYQGVNLYIKNLEDDVDD 341
Query: 202 ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
E L F FG I V+ D++ SK G V F+ A +A+
Sbjct: 342 EKLRAEFEPFGTITSCKVMRDDKSTSKGFGFVCFSSPDEATKAV 385
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 19/149 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + + F +G + + K +GF+ + A+ A ++
Sbjct: 134 IFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGRSKGYGFVHYETGEAAETAIKAVN 193
Query: 171 GHVLKGRSLKI-----------RFAPINAA---IKVKNLTSCVTNELLELAFGVFGDIER 216
G +L + + + + + A + +KNL + VT + E F +G++
Sbjct: 194 GMLLNDKKVYVGYHISRKERQSKLDEMKAQFTNLYIKNLDTSVTQDEFEEMFQKYGNVTS 253
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQAL 245
AIV VDE GNSK G V + A A+
Sbjct: 254 AIVQVDEEGNSKGFGFVNYEHHEEAQSAV 282
>gi|297707183|ref|XP_002830392.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Pongo
abelii]
Length = 614
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 72/144 (50%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ +LKG+ ++I ++ + ++ +KNL + N+ L F FG+I V
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVAC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE G S+ G V F AA QA+
Sbjct: 133 DEHG-SRGFGFVHFETHEAAQQAI 155
Score = 41.6 bits (96), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 33/169 (19%)
Query: 106 KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKH 160
+ ++F N +Y+ N+ D+ E + +LF +G+ + + ++ + FGF+ +
Sbjct: 186 RALEFTN---IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHE 242
Query: 161 NADKAKAKLDGHVLKGR---------------SLKIRFAPIN---------AAIKVKNLT 196
A KA ++G + GR LK RF + + VKNL
Sbjct: 243 EAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLD 302
Query: 197 SCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ ++ L F +G I A V+ E G+SK G V F+ A +A+
Sbjct: 303 DSIDDDKLRKEFSPYGVITSAKVMT-EGGHSKGFGFVCFSSPEEATKAV 350
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + ++ FGF+ + A +A ++G
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNG 160
Query: 172 HVLKGRSLKI--------RFAPINA------AIKVKNLTSCVTNELLELAFGVFGDIERA 217
+L R + + R A + A I VKNL V + L+ F FG +
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G+S+C G V F + A +A+
Sbjct: 221 KVMRDNSGHSRCFGFVNFEKHEEAQKAV 248
>gi|225438781|ref|XP_002283105.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|296082381|emb|CBI21386.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 17/159 (10%)
Query: 104 QNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDY 158
++ I+ + +++ N+ I + + F +G I + K +GF++ D
Sbjct: 110 RDPSIRRSGTANIFIKNLDKAIDNKALYDTFSTFGAILSCKIATDASGQSKGYGFVQFDN 169
Query: 159 KHNADKAKAKLDGHVLKGRSLKI--------RFAPINAA----IKVKNLTSCVTNELLEL 206
+ +A A KL+G +L + + + R + N + VKNL T+E L+
Sbjct: 170 EESAKNATDKLNGMLLNDKQVYVGPFVRKQERESATNKTKFNNVYVKNLLESTTDEDLKN 229
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
FG +G I A+V+ D G SKC G V F AA+++
Sbjct: 230 IFGEYGPITSAVVMQDGDGKSKCFGFVNFENADDAARSV 268
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 71/146 (48%), Gaps = 14/146 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA- 167
+ LY+G++ ++T++ + +LF G + + ++ + G+ ++Y + D A+A
Sbjct: 31 STSLYVGDLESNVTDSHLYDLFGQLGPVVSVRVCRDLSTRRSLGYGYVNYGNTQDAARAL 90
Query: 168 -KLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
L+ L G+ ++I ++ + +I+ +KNL + N+ L F FG I
Sbjct: 91 DMLNFTPLNGKPIRIMYSFRDPSIRRSGTANIFIKNLDKAIDNKALYDTFSTFGAILSCK 150
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQA 244
+ D G SK G V+F + +A A
Sbjct: 151 IATDASGQSKGYGFVQFDNEESAKNA 176
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 70/168 (41%), Gaps = 36/168 (21%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNAD 163
KF N +Y+ N+ T+ D+ +F YG + K K FGF+ + +A
Sbjct: 209 KFNN---VYVKNLLESTTDEDLKNIFGEYGPITSAVVMQDGDGKSKCFGFVNFENADDAA 265
Query: 164 KAKAKLDGHV--------------------LKGR---SLK---IRFAPINAAIKVKNLTS 197
++ L+G LKGR SLK +F +N + VKNL
Sbjct: 266 RSVEALNGKKFDDKEWYVGKAQKKTEREVELKGRFEQSLKEAVDKFQGLN--LYVKNLDD 323
Query: 198 CVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ ++ L F FG I V+ D G S+ G V F+ A++AL
Sbjct: 324 SIADDKLRELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASRAL 371
>gi|126342235|ref|XP_001367420.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 635
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 75/147 (51%), Gaps = 15/147 (10%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA- 167
LY+G++ +++E + E F P G + + ++ + G+ ++++ AD +A
Sbjct: 10 TASLYVGDLHPEVSEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 168 -KLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
++ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I
Sbjct: 70 ETMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALFDTFSAFGNILSCK 129
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F + AA +A+
Sbjct: 130 VVCDEHG-SKGYGFVHFETRDAAERAI 155
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + + K +GF+ + + A++A K++G
Sbjct: 101 IFIKNLDKSIDNKALFDTFSAFGNILSCKVVCDEHGSKGYGFVHFETRDAAERAIDKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + + L+ FG FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDLRLKRLFGKFGPSLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDESGTSKGFGFVNFERHEDAQKAV 248
>gi|414588979|tpg|DAA39550.1| TPA: hypothetical protein ZEAMMB73_959869 [Zea mays]
Length = 708
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 82/171 (47%), Gaps = 18/171 (10%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFG------FIRMDYKHNADK 164
+N +L++G++ TE D+ LF+ +G+ E+ + K++ G F++ A++
Sbjct: 119 SNYVKLFVGSVPRTATEEDVRPLFEEHGDVLEVALIKDRKTGEQQGCCFVKYATSEEAER 178
Query: 165 AKAKLDGH-VLKGR--SLKIRFA--------PINAAIKVKNLTSCVTNELLELAFGVFGD 213
A L H L G +++R+A I + V +L T + +E F +G
Sbjct: 179 AIRGLHNHYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNKQATPKEIEEIFAPYGH 238
Query: 214 IERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264
+E ++ D S+ G V+F+ K AA +A+ + G + + +P+I+
Sbjct: 239 VEDVYIMRDSVKQSRGCGFVKFSSKEAAVEAMNALS-GTYTMRGCEQPLII 288
>gi|50293737|ref|XP_449280.1| hypothetical protein [Candida glabrata CBS 138]
gi|74690665|sp|Q6FKG4.1|PABP_CANGA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49528593|emb|CAG62254.1| unnamed protein product [Candida glabrata]
Length = 579
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 72/147 (48%), Gaps = 14/147 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAK 166
+ LY+G++ ++E + ++F P G + + ++ + + ++ + A A
Sbjct: 34 SASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAI 93
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
KL+ +KG+ +I ++ + +++ +KNL + N+ L F VFG+I +
Sbjct: 94 EKLNFTPIKGKLCRIMWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSSK 153
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQAL 245
V DE G SK G V F +A++A+
Sbjct: 154 VATDETGKSKGFGYVHFEEDESASEAI 180
>gi|209881749|ref|XP_002142312.1| polyadenylate-binding protein [Cryptosporidium muris RN66]
gi|209557918|gb|EEA07963.1| polyadenylate-binding protein, putative [Cryptosporidium muris
RN66]
Length = 723
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 14/150 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA- 167
+ LY+G++ D+TE + E+F + I ++ + G+ ++Y AD +A
Sbjct: 11 SASLYVGDLDPDVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERAL 70
Query: 168 -KLDGHVLKGRSLKIRFAPINAA--------IKVKNLTSCVTNELLELAFGVFGDIERAI 218
L+ ++ R +I + + A + VKNL + N+ L F +FG+I
Sbjct: 71 DTLNFTCIRSRPCRIMWCLRDPASRRNNEGNVFVKNLDKSIDNKTLFDTFSLFGNIMSCK 130
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALRRC 248
+ D GNS G + F +A +A+ R
Sbjct: 131 IATDSEGNSLGYGFIHFEHPESAKEAIARL 160
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 66/150 (44%), Gaps = 18/150 (12%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKHNADKAK 166
N +++ N+ I + + F +G I + +GFI ++ +A +A
Sbjct: 98 NEGNVFVKNLDKSIDNKTLFDTFSLFGNIMSCKIATDSEGNSLGYGFIHFEHPESAKEAI 157
Query: 167 AKLDGHVLKGRSLKI--------RFAPINAA---IKVKNLTSCVTNELLELAFGVFGDIE 215
A+L+G +L R + + RF+ + + VK++ + E L FGV+G I
Sbjct: 158 ARLNGMILGDRPIYVGKFQRKAERFSEKDKTFTNVYVKHIPKTWSEETLHTLFGVYGKIS 217
Query: 216 RAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
++ D +G + G V F +A +A+
Sbjct: 218 SLVLQSDSKG--RPFGFVNFEDPESAKKAV 245
>gi|356499763|ref|XP_003518706.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 646
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 17/147 (11%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + + F +G + + K +GF++ D + +A KA KL+
Sbjct: 118 IFIKNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLN 177
Query: 171 GHVLKGRSLKI--------RFAPINAA----IKVKNLTSCVTNELLELAFGVFGDIERAI 218
G +L + + + R + + A + VKNL+ T++ L+ FG FG I A+
Sbjct: 178 GMLLNDKQVYVGPFLRKQERESTADKAKFNNVFVKNLSESTTDDELKNVFGEFGTITSAV 237
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SKC G V F AA+A+
Sbjct: 238 VMRDGDGKSKCFGFVNFENADDAARAV 264
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 70/147 (47%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKL 169
LY+G++ ++T+ + +LF G+ + + ++ +G++ +A +A L
Sbjct: 30 LYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARALDVL 89
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ L R ++I ++ + +I+ +KNL + ++ L F FG+I V
Sbjct: 90 NFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDRAIDHKALHDTFSTFGNILSCKVAT 149
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
D G SK G V+F + +A +A+ +
Sbjct: 150 DSSGQSKGYGFVQFDNEESAQKAIEKL 176
Score = 38.9 bits (89), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 93/219 (42%), Gaps = 49/219 (22%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNAD 163
KF N +++ N+ T++++ +F +G + K K FGF+ + +A
Sbjct: 205 KFNN---VFVKNLSESTTDDELKNVFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAA 261
Query: 164 KAKAKLDG--------HVLKGRS-------LKIRFAPI---------NAAIKVKNLTSCV 199
+A L+G +V K + LK RF A + VKNL +
Sbjct: 262 RAVEALNGKKFDDKEWYVGKAQKKSERENELKQRFEQSMKEAADKYQGANLYVKNLDDSL 321
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSL 259
++ L+ F FG I V+ D G S+ G V F+ A++AL L +
Sbjct: 322 GDDKLKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPDEASRAL---------LEMNG 372
Query: 260 RPVIVEPLELTDEIDGLSERTINKKT---PEFYKQRQVG 295
+ V+ +PL +T L++R +++ +F + R VG
Sbjct: 373 KMVVSKPLYVT-----LAQRKEDRRARLQAQFAQMRPVG 406
>gi|185135971|ref|NP_001118228.1| polyadenylate-binding protein 1-like [Homo sapiens]
gi|74754038|sp|Q4VXU2.1|PAP1L_HUMAN RecName: Full=Polyadenylate-binding protein 1-like
gi|119596298|gb|EAW75892.1| hCG2019100, isoform CRA_f [Homo sapiens]
Length = 614
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 72/144 (50%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ +LKG+ ++I ++ + ++ +KNL + N+ L F FG+I V
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVAC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE G S+ G V F AA QA+
Sbjct: 133 DEHG-SRGFGFVHFETHEAAQQAI 155
Score = 41.6 bits (96), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 33/169 (19%)
Query: 106 KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKH 160
+ ++F N +Y+ N+ D+ E + +LF +G+ + + ++ + FGF+ +
Sbjct: 186 RALEFTN---IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHE 242
Query: 161 NADKAKAKLDGHVLKGR---------------SLKIRFAPIN---------AAIKVKNLT 196
A KA ++G + GR LK RF + + VKNL
Sbjct: 243 EAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLD 302
Query: 197 SCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ ++ L F +G I A V+ E G+SK G V F+ A +A+
Sbjct: 303 DSIDDDKLRKEFSPYGVITSAKVMT-EGGHSKGFGFVCFSSPEEATKAV 350
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + ++ FGF+ + A +A ++G
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNG 160
Query: 172 HVLKGRSLKI--------RFAPINA------AIKVKNLTSCVTNELLELAFGVFGDIERA 217
+L R + + R A + A I VKNL V + L+ F FG +
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G+S+C G V F + A +A+
Sbjct: 221 KVMRDNSGHSRCFGFVNFEKHEEAQKAV 248
>gi|395829049|ref|XP_003787673.1| PREDICTED: polyadenylate-binding protein 1-like [Otolemur
garnettii]
Length = 611
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 72/144 (50%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHADVTEALLYEKFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++KG+ ++I ++ + ++ +KNL + + N+ L F FG+I V
Sbjct: 73 NFEMIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEASIDNKALYDTFSTFGNILSCKVAC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE G S+ G V F AA A+
Sbjct: 133 DEHG-SRGFGFVHFETHEAAQHAI 155
Score = 45.4 bits (106), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 37/171 (21%)
Query: 106 KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKH 160
+ ++F N +Y+ N+ D+ E + ELF +G+ + + ++ FGF+ +
Sbjct: 186 RAMEFTN---IYVKNLQADVDEQGLQELFSQFGKMLSVKVMRDSSGHSRGFGFVNFETHE 242
Query: 161 NADKAKAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKN 194
A KA ++G + GR L + R+ +N + VKN
Sbjct: 243 EAQKAVVHMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRMNRYQGVN--LYVKN 300
Query: 195 LTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
L + +E L F +G I A V+ E G+SK G V F+ A +A+
Sbjct: 301 LDDSIDDEKLRKEFSPYGMITSAKVMT-EGGHSKGFGFVCFSSPEEATKAV 350
>gi|363894957|gb|AEW42987.1| putative polyadenylate-binding protein 1, partial [Haliotis
diversicolor]
Length = 563
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 73/147 (49%), Gaps = 15/147 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ +KGR ++I ++ + +++ +KNL + N+ L F FG+I +
Sbjct: 73 NFDTIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIAS 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE G SK G V F + AA QA+ +
Sbjct: 133 DENG-SKGYGFVHFETEEAARQAIEKV 158
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 70/162 (43%), Gaps = 35/162 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGE-------TQELFINKEKMFGFIRMDYKHNADKAKAK 168
+Y+ N G ++ ++ I ELF P+G+ T E I K + FGF+ + A+KA
Sbjct: 193 VYIKNFGDELDDDKIRELFDPFGKIISAKVMTDE--IGKSRGFGFVSYEEPEAAEKAVDN 250
Query: 169 LDGHVLKGRSL---------------------KIRFAPIN----AAIKVKNLTSCVTNEL 203
L+G L G + KI+ IN + VKNL V +E
Sbjct: 251 LNGMELGGGKVLYAGRAQKKAERQAELKDKFEKIKMERINRYQGVNLYVKNLDDVVDDER 310
Query: 204 LELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
L F FG I A V+ E G SK G V F+ A +A+
Sbjct: 311 LRKEFSQFGTITSARVM-SEGGRSKGFGFVCFSSPEEATKAV 351
Score = 42.4 bits (98), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G I N K +GF+ + + A +A K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKIASDENGSKGYGFVHFETEEAARQAIEKVNG 160
Query: 172 HVLKGRSLKI-RFAPINAAIK-------------VKNLTSCVTNELLELAFGVFGDIERA 217
+L G+ + + +F P I +KN + ++ + F FG I A
Sbjct: 161 MLLNGKKVYVGKFIPRKERIALLGDKMKRFNNVYIKNFGDELDDDKIRELFDPFGKIISA 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G S+ G V + AA +A+
Sbjct: 221 KVMTDEIGKSRGFGFVSYEEPEAAEKAV 248
>gi|114682135|ref|XP_514668.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 2
[Pan troglodytes]
gi|397511247|ref|XP_003825989.1| PREDICTED: polyadenylate-binding protein 1-like [Pan paniscus]
Length = 614
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 72/144 (50%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ +LKG+ ++I ++ + ++ +KNL + N+ L F FG+I V
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVAC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE G S+ G V F AA QA+
Sbjct: 133 DEHG-SRGFGFVHFETHEAAQQAI 155
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 33/169 (19%)
Query: 106 KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKH 160
+ ++F N +Y+ N+ D+ E + ELF +G+ + + ++ + FGF+ +
Sbjct: 186 RALEFTN---IYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHE 242
Query: 161 NADKAKAKLDGHVLKGR---------------SLKIRFAPIN---------AAIKVKNLT 196
A KA ++G + GR LK RF + + VKNL
Sbjct: 243 EAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLD 302
Query: 197 SCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ ++ L F +G I A V+ E G+SK G V F+ A +A+
Sbjct: 303 DSIDDDKLRKEFSPYGVITSAKVMT-EGGHSKGFGFVCFSSPEEATKAV 350
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + ++ FGF+ + A +A ++G
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNG 160
Query: 172 HVLKGRSLKI--------RFAPINA------AIKVKNLTSCVTNELLELAFGVFGDIERA 217
+L R + + R A + A I VKNL V + L+ F FG +
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQELFSQFGKMLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G+S+C G V F + A +A+
Sbjct: 221 KVMRDNSGHSRCFGFVNFEKHEEAQKAV 248
>gi|366999420|ref|XP_003684446.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
gi|357522742|emb|CCE62012.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
Length = 579
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 74/159 (46%), Gaps = 15/159 (9%)
Query: 101 SEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFI 154
+E N ++ + LY+G + ++E + ++F P G + + ++ + + ++
Sbjct: 38 TEANNSNVD-TTSASLYVGELDPSVSEALLYDIFSPIGPVTSIRVCRDAITKTSLGYAYV 96
Query: 155 RMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLEL 206
+ + A KL+ +KG+ +I ++ + A++ +KNL + N+ L
Sbjct: 97 NFNDHESGRTAIEKLNYSPIKGKPCRIMWSQRDPALRKKGAGNIFIKNLHPDIDNKALHD 156
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F VFG+I + DE G SK G V F AA +A+
Sbjct: 157 TFSVFGNILSCKIATDETGKSKGFGFVHFEEDNAAVEAV 195
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 70/166 (42%), Gaps = 33/166 (19%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKHNADKA 165
AN +Y+ N+ D E++ LF YG + + K+ FGFI + +A KA
Sbjct: 228 ANFTNVYVKNVDVDTPEDEFTALFSKYGPITSIAMEKDSEGKFRGFGFINFENHDDAAKA 287
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+L+ KG+ L + ++ +N + VKNL +
Sbjct: 288 VEELNDLEFKGQKLYVGRAQKKYERLQELKKQYEASRLEKLAKYQGVN--LFVKNLDDSI 345
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+E LE F FG I A V+ +E G SK G V F+ A +A+
Sbjct: 346 DDEKLEAEFAPFGSITSAKVMRNEEGKSKNFGFVCFSTPEEATKAI 391
>gi|167518892|ref|XP_001743786.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777748|gb|EDQ91364.1| predicted protein [Monosiga brevicollis MX1]
Length = 209
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 12/92 (13%)
Query: 99 PPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI------NKEKMFG 152
PP P N D F+ L + NI D+TE+ + +LFK +GE ++++ N+ + F
Sbjct: 5 PP--PSNVDAMFS----LKVDNITSDMTEDMMRDLFKDFGEIGDIYMPRDRNTNRSRGFC 58
Query: 153 FIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184
F+R + +ADKA K+DGH +GR L ++ A
Sbjct: 59 FVRFYEEADADKAAEKMDGHAFEGRDLIVQKA 90
>gi|19347816|gb|AAL86321.1| putative poly(A)-binding protein [Arabidopsis thaliana]
Length = 613
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 74/150 (49%), Gaps = 14/150 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGET------QELFINKEKMFGFIRMDYKHNADKAK 166
N LY+G++ ++T++ + + F G ++L + +G++ +A +A
Sbjct: 19 NTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAI 78
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
+L+ L G+ +++ ++ + +++ +KNL + ++ L F FG+I
Sbjct: 79 QELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCK 138
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V VD G SK G V++A + +A +A+ +
Sbjct: 139 VAVDSSGQSKGYGFVQYANEESAQKAIEKL 168
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 76/170 (44%), Gaps = 32/170 (18%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNAD 163
KF N +Y+ N+ T++D+ F YG+ + K+ K FGF+ + +A
Sbjct: 197 KFTN---VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAA 253
Query: 164 KAKAKLDGHVLK------GRS---------LKIRFAP---------INAAIKVKNLTSCV 199
+A L+GH GR+ L++R+ ++ + VKNL +
Sbjct: 254 RAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSI 313
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCA 249
++E L+ F FG + + V+ D G SK G V FA A +A+ + +
Sbjct: 314 SDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLS 363
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 17/147 (11%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + + F +G + + K +GF++ + +A KA KL+
Sbjct: 110 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLN 169
Query: 171 GHVLKGRSLKI--------RFAPINAA----IKVKNLTSCVTNELLELAFGVFGDIERAI 218
G +L + + + R + N + VKNL T++ L+ AFG +G I A+
Sbjct: 170 GMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAV 229
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V F AA+A+
Sbjct: 230 VMKDGEGKSKGFGFVNFENADDAARAV 256
>gi|324511850|gb|ADY44928.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 544
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 78/159 (49%), Gaps = 15/159 (9%)
Query: 102 EPQNKDI-KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFI 154
E +KD+ A LY+G++ D+ E ++E F G + + ++ + + ++
Sbjct: 3 EMADKDVASSAKKPSLYVGDLHPDVNETVLLEKFSNIGRVLSIRVCRDALTRRSLGYAYV 62
Query: 155 RMDYKHNADKAKAKLDGHVLKGRSLKIRFA---PINAAIK-----VKNLTSCVTNELLEL 206
+ +A +A ++ ++ GR ++I ++ P + + VKNL V ++ L
Sbjct: 63 NFERPEDAKQALETMNFDIVHGRPIRIMWSQRRPSTSRVAAGNVFVKNLNGSVNSKALYN 122
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F VFG+I + VDE+ SK G V+F + AA +A+
Sbjct: 123 KFSVFGNIVSCKLAVDEQSKSKGYGFVQFETEEAARKAI 161
Score = 38.9 bits (89), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 72/170 (42%), Gaps = 33/170 (19%)
Query: 109 KFANNC--RLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHN 161
K NC +++ N + + + +LF +G+ ++ K FGF+ + +
Sbjct: 190 KRTTNCFTNVFVKNFADILDKEKLQQLFAKFGKIVSCAVSVDGDGKPNGFGFVAFENPDD 249
Query: 162 ADKAKAKLDGHVLKGRSLKI----------RFAPIN----------------AAIKVKNL 195
A+KA + + L G K+ R A ++ A + +KNL
Sbjct: 250 AEKAVKDMQDYHLPGSDRKLYVSRFQKKCERLAELDRKYQLEKNERAKRYEGANLYLKNL 309
Query: 196 TSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ +++L +FG +G++ A V+ + G SK G V F + A +A+
Sbjct: 310 DDAIDDDMLRRSFGEYGNVISAKVMRSDDGRSKGFGFVCFDKPDEAVKAM 359
>gi|293333224|ref|NP_001169298.1| uncharacterized protein LOC100383162 [Zea mays]
gi|224028499|gb|ACN33325.1| unknown [Zea mays]
gi|414588978|tpg|DAA39549.1| TPA: hypothetical protein ZEAMMB73_959869 [Zea mays]
Length = 735
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 82/171 (47%), Gaps = 18/171 (10%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFG------FIRMDYKHNADK 164
+N +L++G++ TE D+ LF+ +G+ E+ + K++ G F++ A++
Sbjct: 119 SNYVKLFVGSVPRTATEEDVRPLFEEHGDVLEVALIKDRKTGEQQGCCFVKYATSEEAER 178
Query: 165 AKAKLDGH-VLKGR--SLKIRFA--------PINAAIKVKNLTSCVTNELLELAFGVFGD 213
A L H L G +++R+A I + V +L T + +E F +G
Sbjct: 179 AIRGLHNHYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNKQATPKEIEEIFAPYGH 238
Query: 214 IERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264
+E ++ D S+ G V+F+ K AA +A+ + G + + +P+I+
Sbjct: 239 VEDVYIMRDSVKQSRGCGFVKFSSKEAAVEAMNALS-GTYTMRGCEQPLII 288
>gi|9930616|gb|AAG02117.1|AF293840_1 poly(A) binding protein [Arabidopsis thaliana]
Length = 660
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 19/151 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + E F +G + + K +GF++ + + +A A KL+
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLN 197
Query: 171 GHVLKGRSLKI-RF-------------APINAAIKVKNLTSCVTNELLELAFGVFGDIER 216
G ++ + + + F P + VKNL + + L FG FG I
Sbjct: 198 GMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISS 257
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQALRR 247
A+V+ D+ GNS+C G V F AAA A+ +
Sbjct: 258 AVVMRDQSGNSRCFGFVNFECTEAAASAVEK 288
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 77/171 (45%), Gaps = 17/171 (9%)
Query: 95 TLDLPPSEPQNKDIKFAN----NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM 150
++ +P S P + A+ N LY G++ +TE + +LFK + + +++
Sbjct: 26 SVQVPVSIPLPSPVVVADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQN 85
Query: 151 -----FGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAA--------IKVKNLTS 197
+ +I ++A +A L+ L R ++I + + + I +KNL +
Sbjct: 86 RRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDA 145
Query: 198 CVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
+ N+ L F FG I V +D G SK G V+F ++ +A A+ +
Sbjct: 146 SIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKL 196
>gi|66809079|ref|XP_638262.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|60466725|gb|EAL64776.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 1035
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 92 QGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI------ 145
Q PT D+P + R+Y+G+I ++TE+ + +F +G F+
Sbjct: 747 QHPTPDVPKPNESAPPVPINEASRIYIGSINWNVTEDQVRSIFSQFGRVISCFLMQNADT 806
Query: 146 NKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKI 181
K K FGF+ + K +AD A A ++G L GRS+K+
Sbjct: 807 GKHKGFGFVDFELKKSADDAIATMNGFELLGRSIKV 842
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKL 169
R+Y+G++ +TE+ I F +G + L + K+ K + FI D + +A KA +
Sbjct: 589 RIYVGSLHFSLTEDVIRATFSVFGNIKSLALGKDASGKSKGYAFIEYDNQESAAKALQSM 648
Query: 170 DGHVLKGRSLKI 181
+V+ GR++K+
Sbjct: 649 TNYVMCGRAIKV 660
>gi|307165845|gb|EFN60208.1| Polyadenylate-binding protein 1 [Camponotus floridanus]
Length = 635
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 74/147 (50%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ DITE + E F G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++KGR ++I ++ + +++ +KNL + N+ + F FG+I V
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQ 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE G SK G V F + AA +++ +
Sbjct: 133 DESGASKGYGFVHFETEEAANKSIDKV 159
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 35/162 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGE-TQELFINKE----KMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+T++ + E+F+ YG T ++K+ + FGF+ + A++A +L+
Sbjct: 194 VYVKNFGEDMTDDKLKEMFEKYGTITSHKVMSKDDGKSRGFGFVAFEDPDAAEQAVLELN 253
Query: 171 GHVL-----------------------KGRSLKI----RFAPINAAIKVKNLTSCVTNEL 203
G + K LKI R+ +N + VKNL + +E
Sbjct: 254 GKDISEGKCMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVN--LYVKNLDDTIDDER 311
Query: 204 LELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
L F FG I A V+++E G SK G V F++ A +A+
Sbjct: 312 LRKEFTPFGTITSAKVMMEE-GRSKGFGFVCFSQPEEATKAV 352
>gi|15219945|ref|NP_173690.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
gi|12643628|sp|O64380.1|PABP3_ARATH RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3
gi|2505869|emb|CAA72907.1| polyA binding protein PAB3 [Arabidopsis thaliana]
gi|15450820|gb|AAK96681.1| Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis
thaliana]
gi|332192163|gb|AEE30284.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
Length = 660
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 19/151 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + E F +G + + K +GF++ + + +A A KL+
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLN 197
Query: 171 GHVLKGRSLKI-RF-------------APINAAIKVKNLTSCVTNELLELAFGVFGDIER 216
G ++ + + + F P + VKNL + + L FG FG I
Sbjct: 198 GMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISS 257
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQALRR 247
A+V+ D+ GNS+C G V F AAA A+ +
Sbjct: 258 AVVMRDQSGNSRCFGFVNFECTEAAASAVEK 288
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 77/171 (45%), Gaps = 17/171 (9%)
Query: 95 TLDLPPSEPQNKDIKFAN----NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM 150
++ +P S P + A+ N LY G++ +TE + +LFK + + +++
Sbjct: 26 SVQVPVSIPLPSPVVVADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQN 85
Query: 151 -----FGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAA--------IKVKNLTS 197
+ +I ++A +A L+ L R ++I + + + I +KNL +
Sbjct: 86 RRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDA 145
Query: 198 CVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
+ N+ L F FG I V +D G SK G V+F ++ +A A+ +
Sbjct: 146 SIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKL 196
>gi|384245275|gb|EIE18770.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 351
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 15/147 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKL 169
LY+GN+ +T+ + E+F G+ E+ I K+K+ +GF++ AD A L
Sbjct: 24 LYVGNLHPFVTDAMLQEIFSTLGQVGEIKIIKDKLTGLSAGYGFVQFLDHRAADMALQSL 83
Query: 170 DGHVLKGRSLKIRFA---------PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVI 220
+G VL G+ L++ +A I V +L S + ++LL AF G + ++
Sbjct: 84 NGRVLHGQELRVNWAFQKDQREDSASQFQIFVGDLASDINDKLLCEAFQSCGCADARVMW 143
Query: 221 VDERGNSKCEGIVEFARKPAAAQALRR 247
G SK G V F + A QAL +
Sbjct: 144 DHNTGRSKGYGFVSFKTRADAEQALSQ 170
>gi|62751624|ref|NP_001015753.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
(Silurana) tropicalis]
gi|58476781|gb|AAH89689.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
(Silurana) tropicalis]
Length = 217
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQDAADRAIEK 157
>gi|389639074|ref|XP_003717170.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Magnaporthe oryzae 70-15]
gi|351642989|gb|EHA50851.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Magnaporthe oryzae 70-15]
gi|440475727|gb|ELQ44390.1| nucleolysin TIA-1 [Magnaporthe oryzae Y34]
gi|440486439|gb|ELQ66302.1| nucleolysin TIA-1 [Magnaporthe oryzae P131]
Length = 479
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEK-----MFGFIRMDYKHNADKAKAKLD 170
LY+G + +TE+ + ++F+ G Q + I +K +GF+ D AD+A L+
Sbjct: 87 LYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAADRAMQTLN 146
Query: 171 GHVLKGRSLKIRFAPINAA------------IKVKNLTSCVTNELLELAFGVFGDIERAI 218
G + +++ +A A I V +L++ V +E+L AF VFG + A
Sbjct: 147 GRRVHQSEIRVNWAYQAATSATKEDTSNHFHIFVGDLSNEVNDEVLTQAFSVFGSVSEAR 206
Query: 219 VIVDER-GNSKCEGIVEFARKPAAAQAL 245
V+ D + G S+ G V F + A +AL
Sbjct: 207 VMWDMKTGRSRGYGFVAFRDRSDAEKAL 234
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 105 NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADK 164
N+ + C Y+GN+ T ND++ LF+ +G E ++ F FI+MD NA +
Sbjct: 295 NQTPAYQTTC--YVGNLTPYTTANDVVPLFQNFGYVVESRFQADRGFAFIKMDSHENAAQ 352
Query: 165 AKAKLDGHVLKGRSLKIRF 183
A L+G+ + GR LK +
Sbjct: 353 AICGLNGYNVNGRPLKCSW 371
>gi|383862667|ref|XP_003706805.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Megachile rotundata]
Length = 630
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 74/147 (50%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ DITE + E F G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++KGR ++I ++ + +++ +KNL + N+ + F FG+I V
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQ 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE G SK G V F + AA +++ +
Sbjct: 133 DESGVSKGYGFVHFETEEAANKSIDKV 159
Score = 45.4 bits (106), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 35/162 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYG--ETQELFIN---KEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+T++ + E+F+ YG + ++ I K + FGF+ + A++A +L+
Sbjct: 194 VYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELN 253
Query: 171 G-HVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNEL 203
G V +G+ + + R+ +N + VKNL + +E
Sbjct: 254 GKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLSRYQGVN--LYVKNLDDSINDER 311
Query: 204 LELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
L F FG I A V++++ G SK G V F+ A +A+
Sbjct: 312 LRREFAPFGTITSAKVMMED-GRSKGFGFVCFSAPEEATKAV 352
>gi|353237193|emb|CCA69172.1| related to PUB1-major polyadenylated RNA-binding protein of nucleus
and cytoplasm [Piriformospora indica DSM 11827]
Length = 415
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 43/72 (59%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDG 171
+N +Y+GN+ T++D+I LF+ G E+ I ++ F F++++ A A +L G
Sbjct: 242 HNTTVYVGNLPSYATQSDLIPLFQTIGYVSEIRIQADRGFAFVKLESHEAAAAAIVQLQG 301
Query: 172 HVLKGRSLKIRF 183
H+++GR +K +
Sbjct: 302 HLVQGRPIKCSW 313
>gi|440899695|gb|ELR50961.1| Polyadenylate-binding protein 1-like protein, partial [Bos
grunniens mutus]
Length = 618
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 72/144 (50%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + ++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE G S+ G V F AA A+
Sbjct: 133 DEHG-SRGFGFVHFETHEAAQNAI 155
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 74/171 (43%), Gaps = 37/171 (21%)
Query: 106 KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKH 160
+ ++F N +Y+ N+ D+ E + +LF +G+ + + ++ + FGF+ +
Sbjct: 186 RAMEFTN---IYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDVSGHSRGFGFVNFEKHE 242
Query: 161 NADKAKAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKN 194
A KA ++G + GR L + R+ +N + VKN
Sbjct: 243 EAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVN--LYVKN 300
Query: 195 LTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
L + +E L F +G I A V+ E G+SK G V F+ A +A+
Sbjct: 301 LDDSIDDEKLRKEFSPYGVITSAKVMT-EGGHSKGFGFVCFSSPEEATKAV 350
>gi|440857933|gb|ELR44433.1| hypothetical protein M91_06292, partial [Bos grunniens mutus]
Length = 149
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 75/144 (52%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ ++TE + E F P G + + ++K+ G+ ++Y+ D +A L
Sbjct: 2 LYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALETL 61
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + +++ +KNL + N+ L F FG+I V
Sbjct: 62 NFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVAC 121
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE+G K G V F ++ +A +A+
Sbjct: 122 DEKG-PKGYGFVHFQKQESAERAI 144
>gi|297834512|ref|XP_002885138.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330978|gb|EFH61397.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 542
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 16/144 (11%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKL 169
LY+G++ D+TE D+I F + + + + + +I D +A A A+L
Sbjct: 23 LYVGDLSPDVTEQDLIHRFSLTVPVLSVHLCRNSVTGKSLCYAYINFDSPFSASNAMARL 82
Query: 170 DGHVLKGRSLKIRFAPINAA---------IKVKNLTSCVTNELLELAFGVFGDIERAIVI 220
+ LKG++++I ++ + + + VKNL +T+ LE F FG I + +
Sbjct: 83 NHTDLKGKAMRIMWSQRDLSYRRRTGFGNLYVKNLDISITSSGLERMFNPFGVI-LSCKV 141
Query: 221 VDERGNSKCEGIVEFARKPAAAQA 244
V+E G SK G V+F + +A A
Sbjct: 142 VEENGQSKGFGFVQFETEQSAVTA 165
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 31/174 (17%)
Query: 104 QNKDIKFANN---CRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIR 155
+N+ + A N +Y+ N+ +ITE+ + LF YG + + ++ M FGF+
Sbjct: 187 KNERVAMAGNKGFTNVYVKNLIENITEDILHRLFSQYGTVSSVVVMRDGMGRSRGFGFVN 246
Query: 156 MDYKHNADKAKAKLDGHVLKGRSLKI--------------------RFAPIN---AAIKV 192
+ NA KA L G + ++L + A N + + V
Sbjct: 247 FCHPENAKKAVDSLHGRQVGSKTLFVGKALKRDERREMLKHKYRDNFIAKSNMRWSNLYV 306
Query: 193 KNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALR 246
KNL+ + + L FG +G I A V+ E G SK G V F+ + + QA R
Sbjct: 307 KNLSESMNDTTLREIFGRYGQIVSAKVMRHENGRSKGFGFVCFSNREESKQAKR 360
>gi|3287682|gb|AAC25510.1| Strong similarity to gb|M97657 poly(A)-binding protein (PABP5) from
A. thaliana [Arabidopsis thaliana]
Length = 655
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 19/151 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + E F +G + + K +GF++ + + +A A KL+
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLN 197
Query: 171 GHVLKGRSLKI-RF-------------APINAAIKVKNLTSCVTNELLELAFGVFGDIER 216
G ++ + + + F P + VKNL + + L FG FG I
Sbjct: 198 GMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISS 257
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQALRR 247
A+V+ D+ GNS+C G V F AAA A+ +
Sbjct: 258 AVVMRDQSGNSRCFGFVNFECTEAAASAVEK 288
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 77/171 (45%), Gaps = 17/171 (9%)
Query: 95 TLDLPPSEPQNKDIKFAN----NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM 150
++ +P S P + A+ N LY G++ +TE + +LFK + + +++
Sbjct: 26 SVQVPVSIPLPSPVVVADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQN 85
Query: 151 -----FGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAA--------IKVKNLTS 197
+ +I ++A +A L+ L R ++I + + + I +KNL +
Sbjct: 86 RRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDA 145
Query: 198 CVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
+ N+ L F FG I V +D G SK G V+F ++ +A A+ +
Sbjct: 146 SIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKL 196
>gi|348563863|ref|XP_003467726.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 613
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 72/144 (50%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + ++ +KNL + ++ L F FG+I V
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDSKALYDTFSTFGNILSCKVAC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE G S+ G V F AA QA+
Sbjct: 133 DEHG-SRGFGFVHFETNEAAQQAI 155
>gi|82595449|ref|XP_725855.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23481012|gb|EAA17420.1| polyA binding protein-related [Plasmodium yoelii yoelii]
Length = 859
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 74/147 (50%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E+F G + + ++ K G+ ++Y + AD +A L
Sbjct: 18 LYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ +KG+ ++ ++ + +++ VKNL + N+ L F +FG+I V
Sbjct: 78 NYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKTIDNKALFDTFSMFGNILSCKVAT 137
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE G SK G V + + +A +A+ +
Sbjct: 138 DEFGKSKNYGFVHYEDEESAKEAIEKV 164
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 101 SEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI---NKEKMFGFIRMD 157
SE D KF N LY+ N +TE + +LF PYGE + + NK + F FI
Sbjct: 183 SERATNDTKFTN---LYVKNFPDTVTEAHLKQLFSPYGEITSMIVKSDNKNRKFCFINYS 239
Query: 158 YKHNADKAKAKLDG 171
+A A L+G
Sbjct: 240 DADSARNAMENLNG 253
>gi|398407815|ref|XP_003855373.1| hypothetical protein MYCGRDRAFT_35430 [Zymoseptoria tritici IPO323]
gi|339475257|gb|EGP90349.1| hypothetical protein MYCGRDRAFT_35430 [Zymoseptoria tritici IPO323]
Length = 401
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLK 175
Y+GN+ T+ND++ LF+ +G E ++ F FI+MD NA A +L G+ +
Sbjct: 290 CYVGNLTPYTTQNDLVPLFQNFGYVTETRFQSDRGFAFIKMDTHENAANAICQLSGYQVN 349
Query: 176 GRSLKIRF 183
GR LK +
Sbjct: 350 GRPLKCSW 357
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 19/149 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKMF-------GFIRMDYKHNADKAKAK 168
LY+G + +TE+ + ++F+ G Q + I +K F GF+ D A++A
Sbjct: 71 LYVGGLDPRVTEDVLKQIFETTGHVQNVKIIPDKNFQSKGFNYGFVEYDDPGAAERAMQT 130
Query: 169 LDGHVLKGRSLKIRFA-----------PINAAIKVKNLTSCVTNELLELAFGVFGDIERA 217
L+G + + +++ +A + I V +L++ V +E+L AF FG + A
Sbjct: 131 LNGRRVHQQEIRVNWAYQSNTTSKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGTVSEA 190
Query: 218 IVIVDER-GNSKCEGIVEFARKPAAAQAL 245
V+ D + G S+ G V F + A +AL
Sbjct: 191 RVMWDMKTGRSRGYGFVAFRDRADAEKAL 219
>gi|356521524|ref|XP_003529405.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 651
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 17/147 (11%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + + F +G + + K +GF++ D + +A KA KL+
Sbjct: 121 IFIKNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLN 180
Query: 171 GHVLKGRSLKI--------RFAPINAA----IKVKNLTSCVTNELLELAFGVFGDIERAI 218
G +L + + + R + + A + VKNL+ T++ L+ FG FG I A+
Sbjct: 181 GMLLNDKQVYVGPFLRKQERESAADKAKFNNVFVKNLSESTTDDELKNTFGEFGTITSAV 240
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SKC G V F AA+A+
Sbjct: 241 VMRDGDGKSKCFGFVNFENADDAARAV 267
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 70/147 (47%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKL 169
LY+G++ ++T+ + +LF G+ + + ++ +G++ +A +A L
Sbjct: 33 LYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARALDVL 92
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ L R ++I ++ + +I+ +KNL + ++ L F FG+I V
Sbjct: 93 NFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDRAIDHKALHDTFSTFGNILSCKVAT 152
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
D G SK G V+F + +A +A+ +
Sbjct: 153 DSSGQSKGYGFVQFDNEESAQKAIEKL 179
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 92/219 (42%), Gaps = 49/219 (22%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNAD 163
KF N +++ N+ T++++ F +G + K K FGF+ + +A
Sbjct: 208 KFNN---VFVKNLSESTTDDELKNTFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAA 264
Query: 164 KAKAKLDG--------HVLKGRS-------LKIRFAPI---------NAAIKVKNLTSCV 199
+A L+G +V K + LK RF A + VKNL +
Sbjct: 265 RAVEALNGKNFDDKEWYVGKAQKKSERENELKQRFEQSMKEAADKYQGANLYVKNLDDSI 324
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSL 259
+E L+ F FG I V+ D G S+ G V F+ A++AL L +
Sbjct: 325 GDEKLKELFSPFGTITSCKVMRDPNGLSRGSGFVAFSTPEEASRAL---------LEMNG 375
Query: 260 RPVIVEPLELTDEIDGLSERTINKKT---PEFYKQRQVG 295
+ V+ +PL +T L++R +++ +F + R VG
Sbjct: 376 KMVVSKPLYVT-----LAQRKEDRRARLQAQFAQMRPVG 409
>gi|242025596|ref|XP_002433210.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
gi|212518751|gb|EEB20472.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
Length = 637
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 73/147 (49%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLFEKFSSAGPVLSIRVCRDMITKRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ LKG+ ++I ++ + +++ +KNL + N+ + F FG+I V
Sbjct: 73 NYDPLKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSTFGNILSCKVAQ 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE G SK G V F + AA +++ +
Sbjct: 133 DESGTSKGYGFVHFETEEAANKSIDKV 159
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 79/169 (46%), Gaps = 38/169 (22%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGE-TQELFINKE----KMFGFIRMDYKHNAD 163
+F N +Y+ N G D +++ + E+F+ YG T ++K+ K FGF+ + A+
Sbjct: 190 RFTN---VYVKNFGEDFSDDLLREMFEKYGRITSHKVMSKDDGKSKGFGFVAFEDPEAAE 246
Query: 164 KAKAKLDG-HVLKGRSLKI--------------------------RFAPINAAIKVKNLT 196
KA A L+G +++G+ L + R+ +N + VKN+
Sbjct: 247 KAVASLNGKEIVEGKPLFVGRAQKKAERQQELKRKFEQLKMERLSRYQGVN--LYVKNID 304
Query: 197 SCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ +E L F FG I A V++++ G SK G V F+ A +A+
Sbjct: 305 DNIDDERLRKEFTPFGTITSAKVMLED-GRSKGFGFVCFSSAEEATKAV 352
>gi|7673355|gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 649
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 74/147 (50%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKA--KL 169
LY+G++ ++T++ + +LF G+ + + ++ G+ ++Y + D A+A L
Sbjct: 29 LYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNPQDAARALEVL 88
Query: 170 DGHVLKGRSLKIRFA---PI-----NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ L G+ ++I ++ P N I +KNL + ++ L F FG+I V V
Sbjct: 89 NFTPLHGKPIRIMYSNRDPTIRRSGNGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVAV 148
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
D G SK G V++ + AA +A+ +
Sbjct: 149 DSSGQSKGYGFVQYDSEEAAQKAIEKL 175
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 27/164 (16%)
Query: 105 NKD--IKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMD 157
N+D I+ + N +++ N+ I + + F +G + + K +GF++ D
Sbjct: 104 NRDPTIRRSGNGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVAVDSSGQSKGYGFVQYD 163
Query: 158 YKHNADKAKAKLDGHVLKGRSL----------------KIRFAPINAAIKVKNLTSCVTN 201
+ A KA KL+G +L + + K RF + VKNL+
Sbjct: 164 SEEAAQKAIEKLNGMLLNDKQVYVGPFVRKHERDMAVDKTRFT----NVFVKNLSESTLE 219
Query: 202 ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
E L FG FG I V+ DE G S+C G V F AA+A+
Sbjct: 220 EELRKIFGEFGAITSVAVMKDEDGKSRCFGFVNFENAEDAARAV 263
Score = 42.0 bits (97), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 32/166 (19%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNAD 163
+F N +++ N+ E ++ ++F +G + + K+ + FGF+ + +A
Sbjct: 204 RFTN---VFVKNLSESTLEEELRKIFGEFGAITSVAVMKDEDGKSRCFGFVNFENAEDAA 260
Query: 164 KAKAKLDGHVLKGRS---------------LKIRF-----APINAA----IKVKNLTSCV 199
+A L+G+ L + LK RF ++ + + +KNL +
Sbjct: 261 RAVEALNGYKLDNKDWFVGRAQKKSEREMELKHRFEQSAKEAVDKSQGLNLYIKNLDDSI 320
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
++E L+ F +G I V+ D G SK G V F+ A++AL
Sbjct: 321 SDEKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSNPEEASRAL 366
>gi|297845300|ref|XP_002890531.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
gi|297336373|gb|EFH66790.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
Length = 659
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 19/151 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + E F +G + + K +GF++ + + +A A KL+
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLN 197
Query: 171 GHVLKGRSLKI-RF-------------APINAAIKVKNLTSCVTNELLELAFGVFGDIER 216
G ++ + + + F P + VKNL + + L FG FG I
Sbjct: 198 GMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISS 257
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQALRR 247
A+V+ D+ GNS+C G V F AAA A+ +
Sbjct: 258 AVVMRDQSGNSRCFGFVNFECTEAAASAVEK 288
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 77/172 (44%), Gaps = 14/172 (8%)
Query: 90 AIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEK 149
++Q P + +P P + N LY G++ +TE + +LFK + + +++
Sbjct: 26 SVQVP-VSIPAPSPAAVADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQ 84
Query: 150 M-----FGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAA--------IKVKNLT 196
+ +I ++A +A L+ L R ++I + + + I +KNL
Sbjct: 85 NRRSLGYAYINFSNPNDAYRAMEALNYTPLFERPIRIMLSNRDPSTRLSGKGNIFIKNLD 144
Query: 197 SCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
+ + N+ L F FG I V +D G SK G V+F ++ +A A+ +
Sbjct: 145 ASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKL 196
>gi|324501709|gb|ADY40758.1| Polyadenylate-binding protein 1 [Ascaris suum]
Length = 595
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 78/159 (49%), Gaps = 15/159 (9%)
Query: 102 EPQNKDI-KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFI 154
E +KD+ A LY+G++ D+ E ++E F G + + ++ + + ++
Sbjct: 3 EMADKDVASSAKKPSLYVGDLHPDVNETVLLEKFSNIGRVLSIRVCRDALTRRSLGYAYV 62
Query: 155 RMDYKHNADKAKAKLDGHVLKGRSLKIRFA---PINAAIK-----VKNLTSCVTNELLEL 206
+ +A +A ++ ++ GR ++I ++ P + + VKNL V ++ L
Sbjct: 63 NFERPEDAKQALETMNFDIVHGRPIRIMWSQRRPSTSRVAAGNVFVKNLNGSVNSKALYN 122
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F VFG+I + VDE+ SK G V+F + AA +A+
Sbjct: 123 KFSVFGNIVSCKLAVDEQSKSKGYGFVQFETEEAARKAI 161
Score = 38.1 bits (87), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 72/170 (42%), Gaps = 33/170 (19%)
Query: 109 KFANNC--RLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHN 161
K NC +++ N + + + +LF +G+ ++ K FGF+ + +
Sbjct: 190 KRTTNCFTNVFVKNFADILDKEKLQQLFAKFGKIVSCAVSVDGDGKPNGFGFVAFENPDD 249
Query: 162 ADKAKAKLDGHVLKGRSLKI----------RFAPIN----------------AAIKVKNL 195
A+KA + + L G K+ R A ++ A + +KNL
Sbjct: 250 AEKAVKDMQDYHLPGSDRKLYVSRFQKKCERLAELDRKYQLEKNERAKRYEGANLYLKNL 309
Query: 196 TSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ +++L +FG +G++ A V+ + G SK G V F + A +A+
Sbjct: 310 DDAIDDDMLRRSFGEYGNVISAKVMRSDDGRSKGFGFVCFDKPDEAVKAM 359
>gi|157818977|ref|NP_001099678.1| poly(A) binding protein, cytoplasmic 6 [Rattus norvegicus]
gi|149027506|gb|EDL83096.1| similar to RIKEN cDNA 4932702K14 (predicted) [Rattus norvegicus]
gi|197246058|gb|AAI68959.1| Poly(A) binding protein, cytoplasmic 3 [Rattus norvegicus]
Length = 643
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 76/146 (52%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKH--NADKAKAKL 169
LY+G++ D+TE + E F P G + + +++ G+ ++++ +A++A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ VKNL + ++ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + A +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEEAERAIEK 157
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + + A++A K++G
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEEAERAIEKMNG 160
Query: 172 HVLKGRSLKI--------RFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
L R + + R A + A K +KNL + +E L+ F FG
Sbjct: 161 MFLNDRKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFSRFGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDARKAV 248
>gi|91094515|ref|XP_971941.1| PREDICTED: similar to poly A binding protein [Tribolium castaneum]
gi|270000753|gb|EEZ97200.1| hypothetical protein TcasGA2_TC004389 [Tribolium castaneum]
Length = 565
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 71/147 (48%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKL 169
LY+G++ D+TE + E F P G+ L + ++ + ++ A++ +
Sbjct: 14 LYVGDLHPDVTEALLYEKFSPAGQILSLRVCRDSRTKQSLGYAYVNFSQTIEAERVLDTM 73
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ +LKG+ ++I ++ + +++ +KNL + N+ + F FG+I V +
Sbjct: 74 NFDLLKGKPIRIMWSQRDPSLRKSGIGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKVAI 133
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
D+ G SK G V F AA +A+ +
Sbjct: 134 DDDGVSKGYGFVHFESIEAANKAIEKV 160
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 33/169 (19%)
Query: 106 KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKH 160
K K+ N +Y+ N G ++T+ + +LFK YG + K FGFI +
Sbjct: 188 KSKKYTN---VYVKNFGRNLTQEQLYDLFKNYGTITSCVVMANPDGTSKGFGFIAFEEPE 244
Query: 161 NADKAKAKLDGHVLKGRSLKI-----------------------RFAPINAA-IKVKNLT 196
+A+KA +++ + L G +L + R+ I A + +KNL
Sbjct: 245 SAEKAVTEMNNYELNGTNLYVGRAQKKSERIKELKKCYEQMKLERYNRIQGANVYIKNLD 304
Query: 197 SCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
N+ L F FG I A V+ E G SK G V F+ A++A+
Sbjct: 305 DTFDNDRLRKEFSQFGAITSAKVMT-EGGRSKGFGFVCFSTPEEASKAI 352
>gi|303272375|ref|XP_003055549.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463523|gb|EEH60801.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 606
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 71/147 (48%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY G++ TE + ELF G + + ++ + G+ ++++ D A+A L
Sbjct: 34 LYCGDLDPSCTEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFQQGNDAARAIDAL 93
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+ G+ ++I ++ + A++ +KNL + N+ L F FG+I A V
Sbjct: 94 NFQVVNGKPIRIMYSQRDPALRKSGVGNIFIKNLDKEIDNKALYDTFAQFGNIVSAKVAT 153
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
D +G SK G V+F + A A+ +
Sbjct: 154 DLQGQSKGYGFVQFDTEEGAQSAIEKV 180
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 30/160 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLD 170
+Y+ N+ +TE + E+F+ +G + + K+ K FGF+ + A K+ +LD
Sbjct: 211 VYVKNLHESVTEEKLREVFEKFGALTSVVVMKDAEGKSKGFGFVCYEDAEAAGKSVEELD 270
Query: 171 GH---------VLKGRS-------LKIRFAP---------INAAIKVKNLTSCVTNELLE 205
G+ V + + LK +F A + +KNL V + L
Sbjct: 271 GYDKIEDKAWVVCRAQKKSEREAELKAKFDAERRERMEKMAGANLYIKNLEDTVDDAKLR 330
Query: 206 LAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I V+ D G S+ V F+ A +A+
Sbjct: 331 ELFAEFGTITSCRVMRDTAGASRGSAFVAFSSADEATRAV 370
>gi|388582290|gb|EIM22595.1| polyadenylate binding protein [Wallemia sebi CBS 633.66]
Length = 637
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 73/150 (48%), Gaps = 14/150 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KAK 166
+ LY+G + +TE + E+F G + + ++ + G+ ++Y + D +A
Sbjct: 37 SASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNLQDGERAL 96
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
+L+ ++K R+ +I ++ + A++ +KNL + N+ L F FG++
Sbjct: 97 EQLNYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFGNVLSCK 156
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNS+ G V + +A+ A++
Sbjct: 157 VATDENGNSRGYGFVHYENGESASAAIQHV 186
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 37/163 (22%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKHNADKAKA--- 167
+++ N+ + + ++ +PYGE + K++ FGF+ +YK++ + AKA
Sbjct: 221 VFIKNLDVSVDDEKFKQILEPYGEILSAVVQKDEQGNSRGFGFV--NYKNHEEAAKAVES 278
Query: 168 ----KLDGH-VLKGRSLK--------------------IRFAPINAAIKVKNLTSCVTNE 202
++DG + R+ K ++A +N + VKNL +E
Sbjct: 279 LNEVEVDGKKIFAARAQKKNEREEELRRNYEQAKLEKLAKYAGVN--LYVKNLDDDFDDE 336
Query: 203 LLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
L F FG I A ++ DE+G SK G V F+ A +A+
Sbjct: 337 RLVGEFEPFGTITSAKIMRDEKGTSKGFGFVCFSSPDEATKAV 379
>gi|351703575|gb|EHB06494.1| Polyadenylate-binding protein 1-like protein [Heterocephalus
glaber]
Length = 605
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 72/144 (50%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + ++ +KNL + ++ L F FG+I V
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDSKALYDTFSTFGNILSCKVAC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE G S+ G V F AA QA+
Sbjct: 133 DEHG-SRGFGFVHFETNEAAQQAI 155
>gi|323455941|gb|EGB11808.1| hypothetical protein AURANDRAFT_9375, partial [Aureococcus
anophagefferens]
Length = 79
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 114 CRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKA 167
C+LY+GNI D+T+ D+ LF PYG+ + F+ E+ F F+ A A A
Sbjct: 2 CKLYVGNISFDMTQQDLNGLFGPYGKVTDAFLPTERETGRPRGFAFVTFSSPAEAQAAIA 61
Query: 168 KLDGHVLKGRSLKI 181
LDG + GR+L++
Sbjct: 62 DLDGKEIDGRALRV 75
>gi|281344898|gb|EFB20482.1| hypothetical protein PANDA_020836 [Ailuropoda melanoleuca]
Length = 674
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 76/159 (47%), Gaps = 28/159 (17%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD-------- 163
LY+G++ D+TE + E F P G +++ ++ + G+ ++++ AD
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQPADVMPTSTSS 72
Query: 164 -------KAKAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAF 208
+A ++ V+KG+ ++I ++ + +++ +KNL + N+ L F
Sbjct: 73 SPLTVTERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 132
Query: 209 GVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRR 247
FG+I V+ DE G SK V F + AA +A+ +
Sbjct: 133 SAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEK 170
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 206 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 265
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+ + + R+ +N + +KNL + +E L
Sbjct: 266 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKL 323
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 324 RKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAV 363
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 114 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 173
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 174 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 233
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 234 KVMRDPSGKSKGFGFVSYEKHEDANKAV 261
>gi|194753367|ref|XP_001958985.1| GF12652 [Drosophila ananassae]
gi|190620283|gb|EDV35807.1| GF12652 [Drosophila ananassae]
Length = 639
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 74/147 (50%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ DI E+++ + F G + + ++ M G+ ++++ AD +A +
Sbjct: 4 LYVGDLHQDINESNLFDKFSSAGPVLSIRVCRDVMSRRSLGYAYVNFQQPADAERALDTM 63
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ +L+ + ++I ++ + +++ +KNL + N+ + F FG+I V
Sbjct: 64 NFDLLRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDKTIDNKAIYDTFSAFGNILSCKVAT 123
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE+ NSK G V F + AA ++ +
Sbjct: 124 DEKANSKGYGFVHFETEEAANTSIDKV 150
Score = 45.4 bits (106), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 61/150 (40%), Gaps = 30/150 (20%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N D + + E F+PYG+ + K K FGF+ + A+ A L+
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALN 244
Query: 171 GHVL-KGRSLKIRFAPINAA------------------------IKVKNLTSCVTNELLE 205
G + +G+SL + A A + VKNL + +E L
Sbjct: 245 GKDMGEGKSLYVARAQKKAERQQELKRKFEELKKKRHDSAFGVNLYVKNLDDSIDDERLC 304
Query: 206 LAFGVFGDIERAIVIVDERGNSKCEGIVEF 235
F +G I A V+ DE G SK G V F
Sbjct: 305 KEFSPYGTITSAKVMTDEEGRSKGFGFVCF 334
>gi|452002199|gb|EMD94657.1| hypothetical protein COCHEDRAFT_1092247 [Cochliobolus
heterostrophus C5]
Length = 572
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 55/94 (58%), Gaps = 12/94 (12%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-------FGFIRMDYKHNADKAKA 167
RLY+GNI +TE D+ E+F+P+GE +++ + +++M +GF++ +A A A
Sbjct: 279 RLYVGNIHFSVTEKDLQEIFEPFGELEQVILQRDEMNPGRSKGYGFVQFVDPSHAKNALA 338
Query: 168 KLDGHVLKGRSLKI-----RFAPINAAIKVKNLT 196
+++G L GR +++ +F P + A ++ +
Sbjct: 339 EMNGFELAGRQIRVGLGNDKFTPESTANLLRTFS 372
>gi|425768240|gb|EKV06770.1| Nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Penicillium digitatum Pd1]
gi|425770410|gb|EKV08883.1| Nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Penicillium digitatum PHI26]
Length = 482
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLK 175
Y+GN+ T+ND++ LF+ +G E + ++ F F++MD NA A +L+G+ +
Sbjct: 313 CYVGNLTPYTTQNDLVPLFQNFGYVLETRLQADRGFAFVKMDSHENAASAICQLNGYNVN 372
Query: 176 GRSLKIRF 183
GR LK +
Sbjct: 373 GRPLKCSW 380
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 21/151 (13%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQEL---------FINKEKMFGFIRMDYKHNADKAK 166
LY+G + +TE+ + ++F+ G + F K +GF+ D A++A
Sbjct: 93 LYVGGLDPRVTEDILKQIFETTGHVVSVKIIPDKNGQFTTKGHNYGFVEFDDPGAAERAM 152
Query: 167 AKLDGHVLKGRSLKIRFAPINAA-----------IKVKNLTSCVTNELLELAFGVFGDIE 215
L+G + +++ +A + + I V +L++ V +E+L AF FG +
Sbjct: 153 QTLNGRRIHQSEIRVNWAYQSNSTSKEDTSNHFHIFVGDLSNEVNDEVLTQAFSAFGSVS 212
Query: 216 RAIVIVDER-GNSKCEGIVEFARKPAAAQAL 245
A V+ D + G S+ G V F + A +AL
Sbjct: 213 EARVMWDMKTGRSRGYGFVAFRDRTEADKAL 243
>gi|357475273|ref|XP_003607922.1| Poly(A)-binding protein [Medicago truncatula]
gi|355508977|gb|AES90119.1| Poly(A)-binding protein [Medicago truncatula]
Length = 654
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 75/150 (50%), Gaps = 14/150 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA- 167
LY+G++ ++T++ + +LF G+ + + ++ + G+ ++Y + D A+A
Sbjct: 33 TTSLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARAL 92
Query: 168 -KLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
L+ L R ++I ++ + +I+ +KNL + ++ L F FG+I
Sbjct: 93 DVLNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDKAIDHKALHDTFSSFGNILSCK 152
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V VD G SK G V+F + AA +A+ +
Sbjct: 153 VAVDGSGQSKGYGFVQFDTEEAAQKAIEKL 182
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 17/147 (11%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + + F +G + + K +GF++ D + A KA KL+
Sbjct: 124 IFIKNLDKAIDHKALHDTFSSFGNILSCKVAVDGSGQSKGYGFVQFDTEEAAQKAIEKLN 183
Query: 171 GHVLKGRSLKI--------RFAPINAA----IKVKNLTSCVTNELLELAFGVFGDIERAI 218
G +L + + + R + + A + VKNL+ T++ L+ FG FG I A+
Sbjct: 184 GMLLNDKQVYVGPFLRKQERESTGDRAKFNNVFVKNLSESTTDDELKKTFGEFGTITSAV 243
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SKC G V F AA+A+
Sbjct: 244 VMRDGDGKSKCFGFVNFESTDDAARAV 270
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 76/186 (40%), Gaps = 37/186 (19%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNAD 163
KF N +++ N+ T++++ + F +G + K K FGF+ + +A
Sbjct: 211 KFNN---VFVKNLSESTTDDELKKTFGEFGTITSAVVMRDGDGKSKCFGFVNFESTDDAA 267
Query: 164 KAKAKLDGHVLKGR---------------SLKIRFAPI---------NAAIKVKNLTSCV 199
+A L+G + + LKI+F A + VKNL +
Sbjct: 268 RAVEALNGKKIDDKEWYVGKAQKKSEREHELKIKFEQSMKEAADKYQGANLYVKNLDDSI 327
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL-----RRCAEGCFF 254
+E L+ F +G I V+ D G S+ G V F+ A++AL + A +
Sbjct: 328 ADEKLKELFSSYGTITSCKVMRDPNGVSRGSGFVAFSTPEEASRALLEMNGKMVASKPLY 387
Query: 255 LTQSLR 260
+T + R
Sbjct: 388 VTLAQR 393
>gi|413918185|gb|AFW58117.1| hypothetical protein ZEAMMB73_452653 [Zea mays]
Length = 766
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 61/111 (54%), Gaps = 12/111 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYK--HNADKAKAKLDGHV 173
L++GNI ++ ++++ +F+ YG+ Q L + K GF+ + Y +A+ A L
Sbjct: 36 LFVGNIDSNVEDSELKFMFEQYGDMQTLNASC-KHHGFVMVSYYDIRSAENAMRALQSKP 94
Query: 174 LKGRSLKIRFAP---------INAAIKVKNLTSCVTNELLELAFGVFGDIE 215
L+ R L IR++ IN ++ + NL + +TN+ L FGVFG+I+
Sbjct: 95 LRCRKLDIRYSSPKDYPLDKDINLSMVIVNLEASITNDDLHQIFGVFGEIK 145
>gi|403216743|emb|CCK71239.1| hypothetical protein KNAG_0G01810 [Kazachstania naganishii CBS
8797]
Length = 596
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 74/149 (49%), Gaps = 14/149 (9%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYK-HNADK- 164
+ LY+G + ++E + +LF P G + + ++ + G+ +++ H A K
Sbjct: 44 VTSTSLYVGELDPSVSEALLYDLFSPIGSVASIRVCRDAITKTSLGYAYVNFSDHEAGKQ 103
Query: 165 AKAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIER 216
A KL+ +KG+ +I ++ + +++ +KNL + N+ L F VFG+I
Sbjct: 104 AIEKLNYTPIKGKLCRIMWSQRDPSLRKKGHGNIFIKNLNQDIDNKALFDTFSVFGNILS 163
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ + DE G SK G V F + AA +A+
Sbjct: 164 SKIATDETGKSKGFGFVHFEEESAANEAI 192
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 69/164 (42%), Gaps = 29/164 (17%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKA 165
A+ +Y+ NI + T+ + E F G + + K K FGF+ + ++A KA
Sbjct: 225 AHFTNVYVKNIDLETTDEEFKEFFGKIGTVTSVALERGPDGKLKGFGFVNYEDHNDAVKA 284
Query: 166 KAKLDGHVLKGRSLKI-----RFAPINAAIK-------------------VKNLTSCVTN 201
+L+G K + L + ++ I + K VKNL + +
Sbjct: 285 VEELNGAEFKDQELFVGRAQKKYERIQSLKKQYESTRLEKMAKYQGVNLFVKNLDDSIDD 344
Query: 202 ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
E L+ F FG+I V+ E G SK G V F+ A +A+
Sbjct: 345 EKLQEEFAPFGNITSVKVMRTENGKSKGFGFVCFSSPEEATKAI 388
>gi|402218978|gb|EJT99053.1| hypothetical protein DACRYDRAFT_24132 [Dacryopinax sp. DJM-731 SS1]
Length = 474
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLD 170
A N +Y+GN+ T+ D+I LF+ G E+ + ++ F F+++D NA A L
Sbjct: 254 ATNSTVYVGNLVPFATQADLIPLFQSIGYLSEIRMQADRGFAFVKLDTHENAATAIVSLQ 313
Query: 171 GHVLKGRSLKIRF 183
G ++ GR +K+ +
Sbjct: 314 GQMIHGRPIKVSW 326
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 18/150 (12%)
Query: 114 CRLYLGNIGGDITENDIIELFKPYGETQELFINKEK-------MFGFIRMDYKHNADKAK 166
LY+GN+ +TE + E+F G Q + I ++ +GF+ +A+ A
Sbjct: 12 AHLYVGNLSPRVTEYMLTEIFAVAGPVQHVKIIPDRNYQHGGLNYGFVEYTDMRSAETAL 71
Query: 167 AKLDGHVLKGRSLKIRFA----------PINAAIKVKNLTSCVTNELLELAFGVFGDIER 216
L+G + +++ +A + + V +L+ V +E+L AF F +
Sbjct: 72 QTLNGRKIFDTEIRVNWAYQGQQNKEDTSGHYHVFVGDLSPEVNDEVLAKAFAAFPTMSD 131
Query: 217 AIVIVD-ERGNSKCEGIVEFARKPAAAQAL 245
A V+ D G S+ G + F K A QA+
Sbjct: 132 ARVMWDMNSGKSRGYGFLAFRDKTDAEQAI 161
>gi|400595086|gb|EJP62896.1| RNA recognition domain-containing protein [Beauveria bassiana ARSEF
2860]
Length = 468
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 74/147 (50%), Gaps = 17/147 (11%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEK-----MFGFIRMDYKHNADKAKAKLD 170
LY+G + +TE+ + ++F+ G Q + I +K +GF+ D AD+A L+
Sbjct: 70 LYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNAKGFNYGFVEYDDPGAADRAMQTLN 129
Query: 171 GHVLKGRSLKIRFA-PINAA----------IKVKNLTSCVTNELLELAFGVFGDIERAIV 219
G + +++ +A N++ I V +L++ V +++L AF FG + A V
Sbjct: 130 GRRVHQSEIRVNWAYQANSSGKEDTSGHFHIFVGDLSNEVNDDILTQAFSAFGSVSEARV 189
Query: 220 IVDER-GNSKCEGIVEFARKPAAAQAL 245
+ D + G S+ G V F +P A +AL
Sbjct: 190 MWDMKTGRSRGYGFVAFRDRPEAEKAL 216
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLK 175
+Y+GN+ T ND++ LF+ +G E ++ F FI+MD NA A +++G+ +
Sbjct: 286 VYVGNLTPYTTPNDVVPLFQNFGFVVESRFQADRGFAFIKMDTHENASMAICQMNGYNVN 345
Query: 176 GRSLKIRF 183
GR LK +
Sbjct: 346 GRPLKCSW 353
>gi|255934068|ref|XP_002558315.1| Pc12g15120 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582934|emb|CAP81139.1| Pc12g15120 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 496
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLK 175
Y+GN+ T+ND++ LF+ +G E + ++ F F++MD NA A +L+G+ +
Sbjct: 311 CYVGNLTPYTTQNDLVPLFQNFGYVLETRLQADRGFAFVKMDSHENAASAICQLNGYNVN 370
Query: 176 GRSLKIRF 183
GR LK +
Sbjct: 371 GRPLKCSW 378
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 19/149 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQEL-------FINKEKMFGFIRMDYKHNADKAKAK 168
LY+G + +TE+ + ++F+ G + F K +GF+ D A++A
Sbjct: 93 LYVGGLDPRVTEDILKQIFETTGHVVSVKIIPDKNFTTKGHNYGFVEFDDPGAAERAMQT 152
Query: 169 LDGHVLKGRSLKIRFAPINAA-----------IKVKNLTSCVTNELLELAFGVFGDIERA 217
L+G + +++ +A + + I V +L++ V +E+L AF FG + A
Sbjct: 153 LNGRRIHQSEIRVNWAYQSNSTSKEDTSNHFHIFVGDLSNEVNDEVLTQAFSAFGSVSEA 212
Query: 218 IVIVDER-GNSKCEGIVEFARKPAAAQAL 245
V+ D + G S+ G V F + A +AL
Sbjct: 213 RVMWDMKTGRSRGYGFVAFRDRAEADKAL 241
>gi|355755445|gb|EHH59192.1| hypothetical protein EGM_09247 [Macaca fascicularis]
Length = 680
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 128 NDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPIN 187
++ +L Y E + F++K K F+ + A+ A L+ R L ++ P +
Sbjct: 20 QEVHDLLSDY-ELKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSCLRERELSVQLQPTD 78
Query: 188 AAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDER-GNSKCEGIVEFARKPAAAQA 244
A + V NL +T + E FG +ER ++ ER G+SK G E+ +K +AA+A
Sbjct: 79 ALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARA 136
>gi|307207781|gb|EFN85399.1| Polyadenylate-binding protein 1 [Harpegnathos saltator]
Length = 552
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 74/147 (50%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ DITE + E F G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++KGR ++I ++ + +++ +KNL + N+ + F FG+I V
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQ 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE G SK G V F + AA +++ +
Sbjct: 133 DESGASKGYGFVHFETEEAANKSIDKV 159
>gi|383862669|ref|XP_003706806.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Megachile rotundata]
Length = 612
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 74/147 (50%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ DITE + E F G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++KGR ++I ++ + +++ +KNL + N+ + F FG+I V
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQ 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE G SK G V F + AA +++ +
Sbjct: 133 DESGVSKGYGFVHFETEEAANKSIDKV 159
Score = 45.1 bits (105), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 35/162 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYG--ETQELFIN---KEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+T++ + E+F+ YG + ++ I K + FGF+ + A++A +L+
Sbjct: 194 VYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELN 253
Query: 171 G-HVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNEL 203
G V +G+ + + R+ +N + VKNL + +E
Sbjct: 254 GKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLSRYQGVN--LYVKNLDDSINDER 311
Query: 204 LELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
L F FG I A V++++ G SK G V F+ A +A+
Sbjct: 312 LRREFAPFGTITSAKVMMED-GRSKGFGFVCFSAPEEATKAV 352
>gi|357154719|ref|XP_003576878.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 653
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ + + + ++F G + + ++ K G+ ++Y AD A+A L
Sbjct: 36 LYVGDLDMSVQDAQLFDVFAQIGGVVSVRVCRDVTTRKSLGYAYVNYNTPADAARALEML 95
Query: 170 DGHVLKGRSLKIRFA---PI-----NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ + GR ++I ++ P A I +KNL + N+ L F VFG+I V
Sbjct: 96 NFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALYDTFCVFGNILSCKVAT 155
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
D G SK G V++ R AA A+ +
Sbjct: 156 DASGESKGYGFVQYERDEAAHAAIEKL 182
Score = 45.4 bits (106), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 68/159 (42%), Gaps = 17/159 (10%)
Query: 105 NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYK 159
+ ++ + +++ N+ I + + F +G + + K +GF++ +
Sbjct: 113 DPSLRKSGTANIFIKNLDKSIDNKALYDTFCVFGNILSCKVATDASGESKGYGFVQYERD 172
Query: 160 HNADKAKAKLDGHVLKGRSLKI---------RFAPINAA---IKVKNLTSCVTNELLELA 207
A A KL+G ++ + + + +P N + VKNL+ T + L
Sbjct: 173 EAAHAAIEKLNGMLMNDKKVYVGPFIRKQERDNSPGNVKFNNVFVKNLSETTTEDDLREI 232
Query: 208 FGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALR 246
FG FG I +V+ + G SKC G V F AA A++
Sbjct: 233 FGKFGTITSVVVMREGDGRSKCFGFVNFESPDEAALAVQ 271
>gi|332858528|ref|XP_003317002.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 1
[Pan troglodytes]
Length = 330
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 72/144 (50%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ +LKG+ ++I ++ + ++ +KNL + N+ L F FG+I V
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVAC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE G S+ G V F AA QA+
Sbjct: 133 DEHG-SRGFGFVHFETHEAAQQAI 155
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + ++ FGF+ + A +A ++G
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNG 160
Query: 172 HVLKGRSLKI--------RFAPINA------AIKVKNLTSCVTNELLELAFGVFGDIERA 217
+L R + + R A + A I VKNL V + L+ F FG +
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQELFSQFGKMLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G+S+C G V F + A +A+
Sbjct: 221 KVMRDNSGHSRCFGFVNFEKHEEAQKAV 248
>gi|426391822|ref|XP_004062265.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Gorilla
gorilla gorilla]
gi|164651982|gb|ABY64766.1| ePAB [Homo sapiens]
Length = 330
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 72/144 (50%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ +LKG+ ++I ++ + ++ +KNL + N+ L F FG+I V
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVAC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE G S+ G V F AA QA+
Sbjct: 133 DEHG-SRGFGFVHFETHEAAQQAI 155
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + ++ FGF+ + A +A ++G
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNG 160
Query: 172 HVLKGRSLKI--------RFAPINA------AIKVKNLTSCVTNELLELAFGVFGDIERA 217
+L R + + R A + A I VKNL V + L+ F FG +
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G+S+C G V F + A +A+
Sbjct: 221 KVMRDNSGHSRCFGFVNFEKHEEAQKAV 248
>gi|391332716|ref|XP_003740776.1| PREDICTED: polyadenylate-binding protein 1-like [Metaseiulus
occidentalis]
Length = 660
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 73/147 (49%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKL 169
LY+G++ D+TE+ + E F G + + ++ + + ++ +A++A +
Sbjct: 13 LYVGDLDPDVTESMLFEKFCQAGPVLSIRVCRDMISRRSLGYAYVNFHQPGDAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ LK R ++I ++ + +++ +KNL + N+ + F FG+I V
Sbjct: 73 NFEPLKNRPMRIMWSQRDPSLRKSGVGNVFIKNLHKDIDNKAIFDTFSAFGNILSCRVAT 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE+GNS+ G V F + AA +A+ +
Sbjct: 133 DEQGNSRGYGFVHFETEEAANEAINKV 159
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 67/150 (44%), Gaps = 19/150 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKHNADKAKAKLD 170
+++ N+ DI I + F +G + ++ +GF+ + + A++A K++
Sbjct: 101 VFIKNLHKDIDNKAIFDTFSAFGNILSCRVATDEQGNSRGYGFVHFETEEAANEAINKVN 160
Query: 171 GHVLKGRSLKI-RFAP-------------INAAIKVKNLTSCVTNELLELAFGVFGDIER 216
G +L + + + +F P + + VKN + + L+ F V+G I
Sbjct: 161 GMLLNEKKVFVGKFVPRSERERMMGDKARLFTNVYVKNFGEELDDGKLKEMFEVYGKITS 220
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQALR 246
A V+ D+ G S+ G V F A QA++
Sbjct: 221 ARVMTDQTGKSRGFGFVSFENPDNAEQAVK 250
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 31/161 (19%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + E+F+ YG+ + K + FGF+ + NA++A +L+
Sbjct: 194 VYVKNFGEELDDGKLKEMFEVYGKITSARVMTDQTGKSRGFGFVSFENPDNAEQAVKELN 253
Query: 171 G-------HVLKGRS---------LKIRFAPIN---------AAIKVKNLTSCVTNELLE 205
+ GR+ LK +F + + VKNL + +E L
Sbjct: 254 DKELGNGKKIYVGRAQKKAERLSDLKRKFEQLKMERMTRYQGVNLYVKNLDDVIDDERLR 313
Query: 206 LAFGVFGDIERAIVIVDERG-NSKCEGIVEFARKPAAAQAL 245
F +G I A V++D G SK G V F+ A +A+
Sbjct: 314 REFAPYGTITSAKVMMDSTGARSKGFGFVCFSSPEEATKAV 354
>gi|452986364|gb|EME86120.1| hypothetical protein MYCFIDRAFT_52503 [Pseudocercospora fijiensis
CIRAD86]
Length = 482
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLK 175
Y+GN+ T+ND++ LF+ +G E ++ F FI+MD NA A L G+ +
Sbjct: 301 CYVGNLTPYTTQNDLVPLFQNFGYVTETRFQSDRGFAFIKMDSHENAANAICHLSGYQVN 360
Query: 176 GRSLKIRF 183
GR LK +
Sbjct: 361 GRPLKCSW 368
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 19/153 (12%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMF-------GFIRMDYKHNADK 164
N LY+G + +TE+ + ++F+ G Q + I +K F GF+ D A++
Sbjct: 79 NKRALYVGGLDPRVTEDVLKQIFETTGHVQSVKIIPDKNFQSKGYNYGFVEYDDPGAAER 138
Query: 165 AKAKLDGHVLKGRSLKIRFA-PINAAIK----------VKNLTSCVTNELLELAFGVFGD 213
A L+G + + +++ +A N A K V +L++ V +E+L AF FG+
Sbjct: 139 AMQTLNGRRVHQQEIRVNWAYQSNTATKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGN 198
Query: 214 IERAIVIVDER-GNSKCEGIVEFARKPAAAQAL 245
+ A V+ D + G S+ G V F + A +AL
Sbjct: 199 VSEARVMWDMKTGRSRGYGFVAFRDRGEAEKAL 231
>gi|444732647|gb|ELW72929.1| Polyadenylate-binding protein 5 [Tupaia chinensis]
Length = 382
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 71/164 (43%), Gaps = 30/164 (18%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKA 165
A +++ N G D+ + + ELF YG T+ + + K K FGF+R + A KA
Sbjct: 196 ATFTNVFVKNFGDDMDDEKLKELFSEYGPTESVKVIRDAGGKSKGFGFVRYETHEAAQKA 255
Query: 166 KAKLDGHVLKGRSLKI--------RFA----------------PINAAIKVKNLTSCVTN 201
L G + G+ L + R A P I +KNL + +
Sbjct: 256 VLDLHGKSMDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDD 315
Query: 202 ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
E L+ F FG I RA V++ E G K G+V F+ A +A+
Sbjct: 316 EKLKEEFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAV 358
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 68/142 (47%), Gaps = 15/142 (10%)
Query: 118 LGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKLDG 171
+G++ D+TE+ + + F+P G + I ++ + +G++ + +A+ A ++
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 172 HVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIVDE 223
++ G+ ++ ++ + ++ +KNL + N L F FG+I V+ D+
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 224 RGNSKCEGIVEFARKPAAAQAL 245
G SK V F AA +A+
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAI 162
>gi|410953832|ref|XP_003983574.1| PREDICTED: polyadenylate-binding protein 1-like [Felis catus]
Length = 616
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 72/144 (50%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V++G+ ++I ++ + ++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFEVIRGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
D G S+ G V F AA QA+
Sbjct: 133 DNHG-SRGFGFVHFETHEAAQQAI 155
Score = 42.4 bits (98), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 75/171 (43%), Gaps = 37/171 (21%)
Query: 106 KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKH 160
+ ++F N +Y+ N+ D+ E + +LF +G+ + + ++ + FGF+ +
Sbjct: 186 RAMEFTN---IYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHE 242
Query: 161 NADKAKAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKN 194
A KA ++G ++GR L + R+ +N + VKN
Sbjct: 243 EAQKAVTDMNGKEVRGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVN--LYVKN 300
Query: 195 LTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
L + +E L F +G I A V+ E G+SK G V F+ A +A+
Sbjct: 301 LDDSIDDEKLRREFSPYGVITSAKVMT-EGGHSKGFGFVCFSSPEEATKAV 350
>gi|169768824|ref|XP_001818882.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Aspergillus oryzae RIB40]
gi|238498168|ref|XP_002380319.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Aspergillus flavus NRRL3357]
gi|83766740|dbj|BAE56880.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220693593|gb|EED49938.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Aspergillus flavus NRRL3357]
gi|391874569|gb|EIT83434.1| RRM domain protein [Aspergillus oryzae 3.042]
Length = 477
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLK 175
Y+GN+ T+ND++ LF+ +G E + ++ F FI+MD NA A +L+G+ +
Sbjct: 311 CYVGNLTPYTTQNDLVPLFQNFGYVLETRLQADRGFAFIKMDSHENAAMAICQLNGYNVN 370
Query: 176 GRSLKIRF 183
GR LK +
Sbjct: 371 GRPLKCSW 378
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 72/150 (48%), Gaps = 20/150 (13%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQEL--------FINKEKMFGFIRMDYKHNADKAKA 167
LY+G + +TE+ + ++F+ G + F +K +GF+ D A++A
Sbjct: 92 LYVGGLDQRVTEDILKQIFETTGHVVSVKIIPDKNKFNSKGYNYGFVEFDDPGAAERAMQ 151
Query: 168 KLDGHVLKGRSLKIRFAPINAA-----------IKVKNLTSCVTNELLELAFGVFGDIER 216
L+G + +++ +A + + I V +L++ V +E+L+ AF FG +
Sbjct: 152 TLNGRRIHQSEIRVNWAYQSNSTNKEDTSNHFHIFVGDLSNEVNDEILQQAFSAFGSVSE 211
Query: 217 AIVIVDER-GNSKCEGIVEFARKPAAAQAL 245
A V+ D + G S+ G V F + A +AL
Sbjct: 212 ARVMWDMKTGRSRGYGFVAFRDRADADKAL 241
>gi|451845251|gb|EMD58564.1| hypothetical protein COCSADRAFT_103344 [Cochliobolus sativus
ND90Pr]
Length = 569
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 52/87 (59%), Gaps = 12/87 (13%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-------FGFIRMDYKHNADKAKA 167
RLY+GNI +TE D+ E+F+P+GE +++ + +++M +GF++ +A A A
Sbjct: 276 RLYVGNIHFSVTEKDLQEIFEPFGELEQVILQRDEMNPGRSKGYGFVQFVDPSHAKNALA 335
Query: 168 KLDGHVLKGRSLKI-----RFAPINAA 189
+++G L GR +++ +F P + A
Sbjct: 336 EMNGFELAGRQIRVGLGNDKFTPESTA 362
>gi|392574075|gb|EIW67212.1| hypothetical protein TREMEDRAFT_40410 [Tremella mesenterica DSM
1558]
Length = 666
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 14/145 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KAKAKL 169
LY+G + +TE + E+F G + + ++ + G+ ++Y + AD +A L
Sbjct: 42 LYVGELDPSVTEAMLFEIFNIIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 101
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ +KGR +I ++ + A++ +KNL + N+ L F FG+I V V
Sbjct: 102 NYSAIKGRPCRIMWSQRDPALRKTGQGNIFIKNLDESIDNKALHDTFAAFGEILSCKVGV 161
Query: 222 DERGNSKCEGIVEFARKPAAAQALR 246
DE G S+ V + AA A++
Sbjct: 162 DEDGKSRGFAFVHYQTGEAADAAIK 186
Score = 41.6 bits (96), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 69/164 (42%), Gaps = 29/164 (17%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKA 165
A+ +++ N+ +TE + +L +GET + ++ K K FGF+ A+KA
Sbjct: 218 AHFTNVFVKNVDLSVTEKEFEDLVSKFGETVSIALSLDEEGKSKGFGFVNYVSHEAAEKA 277
Query: 166 KAKLDGHVLKGRSL----------------------KIRFAPINAAIK--VKNLTSCVTN 201
+L+ + G+ L + F +A + VKNL +
Sbjct: 278 VDELNDKEVNGQKLWAGRAQKRVERDTELRKTIEEKRQEFDAKSAGVNLYVKNLDDEWDD 337
Query: 202 ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ L F FG I V+ DERG S+ G V ++ A +A+
Sbjct: 338 DRLRAEFDSFGTITSCKVMKDERGVSRNFGFVCYSSPEEATKAV 381
>gi|224060514|ref|XP_002300227.1| predicted protein [Populus trichocarpa]
gi|222847485|gb|EEE85032.1| predicted protein [Populus trichocarpa]
Length = 644
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 81/168 (48%), Gaps = 20/168 (11%)
Query: 100 PSEPQNKDIKFANN-----CRLYLGNIGGDITENDIIELFKPYGETQELFINKE----KM 150
P +PQ+ + ANN LY+G++ +T++ + +LF G+ + + ++ +
Sbjct: 7 PVQPQSVNAG-ANNPNFVTTSLYVGDLEASVTDSQLYDLFNQVGQVVSVRVCRDLTSRRS 65
Query: 151 FGFIRMDYKHNADKAKA--KLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVT 200
G+ ++Y + D A+A L+ L G +++ ++ + I+ +KNL +
Sbjct: 66 LGYGYVNYSNPQDAARALEMLNFTPLNGSPIRVMYSHRDPTIRKSGAGNIFIKNLDKAID 125
Query: 201 NELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
++ L F FG+I V D G SK G V+F + AA +A+ +
Sbjct: 126 HKALHDTFSAFGNILSCKVATDPSGQSKGYGFVQFDSEEAAQKAIEKL 173
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 66/151 (43%), Gaps = 25/151 (16%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + + F +G + + K +GF++ D + A KA KL+
Sbjct: 115 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDPSGQSKGYGFVQFDSEEAAQKAIEKLN 174
Query: 171 GHVLKGRSL----------------KIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDI 214
G +L + + K+RF + VKNL+ T E L FG FG I
Sbjct: 175 GMLLNDKQVYVGPFLRKQERDTATDKMRFN----NVFVKNLSETTTEEDLNKTFGEFGTI 230
Query: 215 ERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+V+ D G SKC G V F AA+A+
Sbjct: 231 TSIVVMRDGDGKSKCFGFVNFENAEDAAKAV 261
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 65/159 (40%), Gaps = 29/159 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+++ N+ TE D+ + F +G + + K K FGF+ + +A KA L+
Sbjct: 206 VFVKNLSETTTEEDLNKTFGEFGTITSIVVMRDGDGKSKCFGFVNFENAEDAAKAVEALN 265
Query: 171 GHVLKGRS---------------LKIRFAPI---------NAAIKVKNLTSCVTNELLEL 206
G + + LK RF A + +KNL + +E L+
Sbjct: 266 GKKIDDKEWFVGKAQKKYEREVELKQRFEQSMKEAADKFQGANLYIKNLDDSIGDEKLKE 325
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I V+ D G S+ G V F+ A++AL
Sbjct: 326 LFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRAL 364
>gi|270015092|gb|EFA11540.1| hypothetical protein TcasGA2_TC016061 [Tribolium castaneum]
Length = 309
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 19/127 (14%)
Query: 99 PPSEPQNKDIKF--------ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM 150
P SE +K + F A NC +Y G I + E+ + + F PYG QE+ + KEK
Sbjct: 23 PKSEANSKPMSFDEIYNQSSATNCTVYCGGITNGLCEDLLQKTFLPYGIIQEIRVFKEKG 82
Query: 151 FGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA-----PINAAIKVKNLTSCVTNELLE 205
+ FIR K +A A + + G+++K + P NA + LTS +
Sbjct: 83 YAFIRFSTKESATHAIVGVHNSEIGGQTVKCSWGKESGDPNNAPAASQALTS------TQ 136
Query: 206 LAFGVFG 212
+G +G
Sbjct: 137 YPYGAYG 143
>gi|255538240|ref|XP_002510185.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223550886|gb|EEF52372.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 658
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 16/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKHNADKAKAKLD 170
+++ N+ I + + F +G + + +GF++ D + A A KL+
Sbjct: 127 IFIKNLDKTIDHKALHDTFSSFGNILSCKVATDSSGQSRGYGFVQFDNEEAAQNAIDKLN 186
Query: 171 GHVLKGRSLKI--------RFAPINAA---IKVKNLTSCVTNELLELAFGVFGDIERAIV 219
G +L + + + R + N + VKNL+ T E L+ FG +G+I A++
Sbjct: 187 GMLLNDKQVYVGHFLRKHERDSASNKKFNNVYVKNLSESTTEEDLKNIFGEYGEITSAVI 246
Query: 220 IVDERGNSKCEGIVEFARKPAAAQAL 245
+ D G SKC G V F AAA+A+
Sbjct: 247 MRDADGKSKCFGFVNFENTDAAAKAV 272
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 69/166 (41%), Gaps = 32/166 (19%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNAD 163
KF N +Y+ N+ TE D+ +F YGE I K K FGF+ + A
Sbjct: 213 KFNN---VYVKNLSESTTEEDLKNIFGEYGEITSAVIMRDADGKSKCFGFVNFENTDAAA 269
Query: 164 KAKAKLDGHVLKGR---------------SLKIRF-APINAAIK--------VKNLTSCV 199
KA L+G + + LK +F + A+ +KNL +
Sbjct: 270 KAVESLNGKKIDDKEWYVGKAQKKSERELELKSQFEQSMKEAVDKYQGVNLYIKNLDDSI 329
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
++E L+ F FG I V+ D G S+ G V F+ A++AL
Sbjct: 330 SDENLKELFSDFGMITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 375
>gi|119596295|gb|EAW75889.1| hCG2019100, isoform CRA_c [Homo sapiens]
Length = 433
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 72/144 (50%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ +LKG+ ++I ++ + ++ +KNL + N+ L F FG+I V
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVAC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE G S+ G V F AA QA+
Sbjct: 133 DEHG-SRGFGFVHFETHEAAQQAI 155
Score = 41.6 bits (96), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 33/167 (19%)
Query: 108 IKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNA 162
++F N +Y+ N+ D+ E + +LF +G+ + + ++ + FGF+ + A
Sbjct: 188 LEFTN---IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEA 244
Query: 163 DKAKAKLDGHVLKGR---------------SLKIRFAPIN---------AAIKVKNLTSC 198
KA ++G + GR LK RF + + VKNL
Sbjct: 245 QKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDS 304
Query: 199 VTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ ++ L F +G I A V+ E G+SK G V F+ A +A+
Sbjct: 305 IDDDKLRKEFSPYGVITSAKVMT-EGGHSKGFGFVCFSSPEEATKAV 350
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + ++ FGF+ + A +A ++G
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNG 160
Query: 172 HVLKGRSLKI--------RFAPINA------AIKVKNLTSCVTNELLELAFGVFGDIERA 217
+L R + + R A + A I VKNL V + L+ F FG +
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G+S+C G V F + A +A+
Sbjct: 221 KVMRDNSGHSRCFGFVNFEKHEEAQKAV 248
>gi|169646279|ref|NP_001108616.1| RNA binding motif protein 14 [Danio rerio]
gi|194332550|ref|NP_001123764.1| uncharacterized protein LOC100170513 [Xenopus (Silurana)
tropicalis]
gi|63100727|gb|AAH95368.1| Zgc:110682 [Danio rerio]
gi|163915521|gb|AAI57377.1| Zgc:110682 protein [Danio rerio]
gi|189441765|gb|AAI67521.1| LOC100170513 protein [Xenopus (Silurana) tropicalis]
Length = 471
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 61/109 (55%), Gaps = 8/109 (7%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLD 170
++ +L++GN+ + T++D+I LF P+GE + I + F F+ + + AD A L+
Sbjct: 4 SSAVKLFVGNLDLETTQDDLIALFAPFGEV--VHITVLRQFAFVHLQGEGAADSAIRDLN 61
Query: 171 GHVLKGRSLKIRFA---PINAA-IKVKNLT-SCVTNELLELAFGVFGDI 214
G +GRSL + + P+N+ + V NL SC +L +L F +G +
Sbjct: 62 GREYRGRSLVVEESKGRPLNSTKVFVGNLCASCSVEDLYDL-FSPYGKV 109
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKHNADKAK 166
N+ ++++GN+ + D+ +LF PYG+ + K K + F+ M++K +A++A
Sbjct: 81 NSTKVFVGNLCASCSVEDLYDLFSPYGKVLDCDKVKTKPSSLTGYAFVYMEHKEDAEQAI 140
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIKVKNLTSC 198
L G GR L + + + + SC
Sbjct: 141 EGLHGTTFMGRPLAVELSKVQQSTNKVPCASC 172
>gi|355754577|gb|EHH58478.1| hypothetical protein EGM_08341 [Macaca fascicularis]
Length = 637
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 72/146 (49%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGE------TQELFINKEKMFGFIRMDYKHNADKAKAKL 169
LY+G++ D+TE + E F G +++ + + ++ + +A++A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ VKNL + N++L FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRRSGVGNIFVKNLDKSINNKVLYDTVSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETHEAAERAIEK 157
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + +LF +G + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVN--LYVKNLDDDIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
AF FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + +G + N K +GF+ + A++A K++G
Sbjct: 101 IFVKNLDKSINNKVLYDTVSAFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + +E L+ FG FG
Sbjct: 161 TLLNDRKVFVGRFKSRKEREAELGAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDARKAV 248
>gi|109120204|ref|XP_001091129.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Macaca
mulatta]
Length = 637
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 72/146 (49%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGE------TQELFINKEKMFGFIRMDYKHNADKAKAKL 169
LY+G++ D+TE + E F G +++ + + ++ + +A++A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ VKNL + N++L FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRRSGVGNIFVKNLDKSINNKVLYDTVSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETHEAAERAIEK 157
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + +LF +G + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 171 G------HVLKGRSLK--------------------IRFAPINAAIKVKNLTSCVTNELL 204
G H+ GR+ K R+ +N + VKNL + +E L
Sbjct: 253 GKELNGKHIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVN--LYVKNLDDDIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
AF FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + +G + N K +GF+ + A++A K++G
Sbjct: 101 IFVKNLDKSINNKVLYDTVSAFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + +E L+ FG FG
Sbjct: 161 TLLNDRKVFVGRFKSRKEREAELGAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAV 248
>gi|431914406|gb|ELK15663.1| Non-POU domain-containing octamer-binding protein [Pteropus alecto]
Length = 245
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 63/117 (53%), Gaps = 17/117 (14%)
Query: 267 LELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEML 326
++ D+ +GL E+ + K +F+K+R+ PRFA SFE+EY RWK L E+ + + + +
Sbjct: 1 MDQLDDEEGLPEKLVIKNQ-QFHKEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQV 59
Query: 327 RKELAQREIDRERQKAEWEMKERQAE--------ELKRRDEELMKK---HAEEMQLR 372
R I R+K E EM+ + E +L RR EEL + H +E+Q R
Sbjct: 60 -----DRNIKEAREKLEMEMEAARHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 111
>gi|296232872|ref|XP_002761752.1| PREDICTED: ribonucleoprotein PTB-binding 1 [Callithrix jacchus]
Length = 630
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 83/173 (47%), Gaps = 21/173 (12%)
Query: 92 QGPTLDLPPSEPQ-------NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELF 144
+ P +LPP +P+ + + +F N ++ + + GD+T ++ +L + Y E + F
Sbjct: 47 RAPEEELPPLDPEEIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVHDLLRAY-ELKYCF 105
Query: 145 INKEKMFG-------FIRMDYKHNADKAKAK-----LDGHVLKGRSLKIRFAPINAAIKV 192
++K K G ++ + + +A + + L L+ L ++ P +A + V
Sbjct: 106 VDKYKGTGQSQAHSWWVLLWVQVDAGLGEGEGFVESLHQSRLREHELSVQLQPTDALLCV 165
Query: 193 KNLTSCVTNELLELAFGVFGDIERAIVIVDER-GNSKCEGIVEFARKPAAAQA 244
NL T + E FG +ER ++ ER G+SK G E+ +K +AA+A
Sbjct: 166 ANLPPTFTQQQFEELVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARA 218
>gi|18402769|ref|NP_564554.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|334183191|ref|NP_001185184.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|10120431|gb|AAG13056.1|AC011807_15 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|13877633|gb|AAK43894.1|AF370517_1 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|17978685|gb|AAL47336.1| putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|332194351|gb|AEE32472.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|332194352|gb|AEE32473.1| poly(A) binding protein 8 [Arabidopsis thaliana]
Length = 671
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAK 166
LY+G++ +T++ + E F G+ + + ++ +G++ +A +A
Sbjct: 44 TTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRAL 103
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
+L+ L GR++++ ++ + +++ +KNL + ++ L F FG I
Sbjct: 104 NELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCK 163
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V VD G SK G V++ AA A+ +
Sbjct: 164 VAVDPSGQSKGYGFVQYDTDEAAQGAIDKL 193
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 79/187 (42%), Gaps = 33/187 (17%)
Query: 102 EPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRM 156
+P + +KF N +Y+ N+ +++ ++ ++F +G T I K K FGF+
Sbjct: 215 DPSGEKVKFTN---VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNF 271
Query: 157 DYKHNADKAKAKLDGHVLKGRS---------------LKIRF--APINAAIK-------V 192
+ +A +A L+G + LK +F + AA K V
Sbjct: 272 ENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYV 331
Query: 193 KNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGC 252
KNL VT++ L F FG I V+ D G S+ G V F+ A +A+ G
Sbjct: 332 KNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEM-NGK 390
Query: 253 FFLTQSL 259
+T+ L
Sbjct: 391 MIVTKPL 397
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 17/147 (11%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + E F +G + + K +GF++ D A A KL+
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLN 194
Query: 171 GHVLKGRSL-------KIRFAPINAAIK-----VKNLTSCVTNELLELAFGVFGDIERAI 218
G +L + + K++ P +K VKNL+ +++E L FG FG +
Sbjct: 195 GMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCV 254
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQAL 245
++ D G SK G V F AA+A+
Sbjct: 255 IMRDGEGKSKGFGFVNFENSDDAARAV 281
>gi|441613070|ref|XP_004088121.1| PREDICTED: LOW QUALITY PROTEIN: ribonucleoprotein PTB-binding 2
[Nomascus leucogenys]
Length = 858
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 65/131 (49%), Gaps = 2/131 (1%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVL 174
++ + N+ D ++ +L K Y + + ++++ K F+ + A A +
Sbjct: 250 KILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSF 308
Query: 175 KGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIV 233
+G+ L ++ P +A + V NL T+E E +G+IER ++ E G+SK G V
Sbjct: 309 RGKDLIVQLQPTDALLCVTNLPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFV 368
Query: 234 EFARKPAAAQA 244
E+ +K AA+A
Sbjct: 369 EYMKKDFAAKA 379
>gi|400234898|gb|AFP74112.1| poly-A binding protein, partial [Nicotiana benthamiana]
Length = 643
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 73/147 (49%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKA--KL 169
LY+G++ ++T++ + +LF G+ + + ++ G+ ++Y + D A+A L
Sbjct: 29 LYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNPQDAARALEVL 88
Query: 170 DGHVLKGRSLKIRFA---PI-----NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ L G+ ++I ++ P N I +KNL + ++ L F FG+I V V
Sbjct: 89 NFTPLHGKPIRIMYSNRDPTIRRSGNGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVAV 148
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
D G SK G V++ AA +A+ +
Sbjct: 149 DSSGQSKGYGFVQYDSDEAAQKAIEKL 175
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 70/164 (42%), Gaps = 27/164 (16%)
Query: 105 NKD--IKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMD 157
N+D I+ + N +++ N+ I + + F +G + + K +GF++ D
Sbjct: 104 NRDPTIRRSGNGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVAVDSSGQSKGYGFVQYD 163
Query: 158 YKHNADKAKAKLDGHVLKGRSL----------------KIRFAPINAAIKVKNLTSCVTN 201
A KA KL+G +L + + K RF + VKNL+
Sbjct: 164 SDEAAQKAIEKLNGMLLNDKQVYVGPFVRKQERDMAVDKTRFT----NVFVKNLSESTLE 219
Query: 202 ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
E L FG FG I V+ DE G S+C G V F AA+A+
Sbjct: 220 EELRKIFGEFGTITSVAVMKDEDGKSRCFGFVNFENAEDAARAV 263
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 73/166 (43%), Gaps = 32/166 (19%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNAD 163
+F N +++ N+ E ++ ++F +G + + K+ + FGF+ + +A
Sbjct: 204 RFTN---VFVKNLSESTLEEELRKIFGEFGTITSVAVMKDEDGKSRCFGFVNFENAEDAA 260
Query: 164 KAKAKLDGHVLKGRS---------------LKIRF-----APINAA----IKVKNLTSCV 199
+A L+G+ L + LK RF ++ + + +KNL +
Sbjct: 261 RAVEALNGYKLDNKDWFVGRAQKKSEREMELKHRFEQSAQEAVDKSQGLNLYLKNLDDSI 320
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+++ L+ F +G I V+ D G SK G V F+ A++AL
Sbjct: 321 SDDKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSTPEEASRAL 366
>gi|366987097|ref|XP_003673315.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
gi|342299178|emb|CCC66926.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
Length = 575
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 70/146 (47%), Gaps = 14/146 (9%)
Query: 114 CRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKA 167
LY+G + ++E + ++F P G + + ++ + + ++ + KA
Sbjct: 35 ASLYVGELDPTVSEALLYDIFSPIGSVSSIRVCRDAVTKTSLGYAYVNFNDHEAGKKAIE 94
Query: 168 KLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIV 219
+L+ +KGR +I ++ + A++ +KNL + N+ L F VFG+I + +
Sbjct: 95 QLNYTPIKGRLCRIMWSQRDPALRKKGSGNIFIKNLHPDIDNKALFETFSVFGNILSSKI 154
Query: 220 IVDERGNSKCEGIVEFARKPAAAQAL 245
DE G SK G V F + +A +A+
Sbjct: 155 ATDETGKSKGFGFVHFEHESSAKEAI 180
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 33/166 (19%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKA 165
A+ +Y+ NI + T+ + ELF YG + K K FGF+ + +A KA
Sbjct: 213 AHFTNVYVKNINLETTDEEFNELFAKYGNVLSSSLEKTEDGKLKGFGFVDFEKHEDAAKA 272
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+L+G K ++L + ++ +N + VKNL +
Sbjct: 273 VEELNGTEFKDQTLFVSRAQKKYERMQELKKQYEASRLEKMAKYQGVN--LFVKNLDDSI 330
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+E L+ F +G I V+ + G SK G V F+ A +A+
Sbjct: 331 DDEKLKEEFAPYGTITSVRVMRTDNGKSKGFGFVCFSTPEEATKAI 376
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 70/165 (42%), Gaps = 24/165 (14%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
+++ N+ DI + E F +G I K K FGF+ +++ +A +A L+
Sbjct: 125 IFIKNLHPDIDNKALFETFSVFGNILSSKIATDETGKSKGFGFVHFEHESSAKEAIDALN 184
Query: 171 GHVLKGRSLKIRFAP----------------INAAIKVKNLTSCVTNELLELAFGVFGDI 214
G +L G+ + + AP + VKN+ T+E F +G++
Sbjct: 185 GMLLNGQEIYV--APHLTRKERDSQLEETKAHFTNVYVKNINLETTDEEFNELFAKYGNV 242
Query: 215 ERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSL 259
+ + E G K G V+F + AA+A+ G F Q+L
Sbjct: 243 LSSSLEKTEDGKLKGFGFVDFEKHEDAAKAVEEL-NGTEFKDQTL 286
>gi|392339709|ref|XP_003753884.1| PREDICTED: LOW QUALITY PROTEIN: poly(A) binding protein,
cytoplasmic 1-like [Rattus norvegicus]
Length = 475
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 75/144 (52%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E+F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++KG+ ++I ++ + ++ +KNL + + N+ L F FG I + V+
Sbjct: 73 NFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVY 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
+E G S+ G V F AA +A+
Sbjct: 133 NEHG-SRGFGFVHFETHEAAQKAI 155
>gi|119113388|ref|XP_309558.3| AGAP011092-PA [Anopheles gambiae str. PEST]
gi|116131767|gb|EAA05186.3| AGAP011092-PA [Anopheles gambiae str. PEST]
Length = 634
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 73/147 (49%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ DITE + E F G + + ++ + G+ ++++ AD +A +
Sbjct: 4 LYVGDLHSDITEATLFEKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDTM 63
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ +KGR ++I ++ + +++ +KNL + N+ + F FG+I V
Sbjct: 64 NFDPIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKKIDNKAMYDTFSAFGNILSCKVAQ 123
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE+G SK G V F + +A ++ +
Sbjct: 124 DEKGQSKGYGFVHFETEESANTSIEKV 150
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 30/159 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGE-TQELFINKE---KMFGFIRMDYKHNADKAKAKL-- 169
+Y+ N G D+TE + ++F+ +G T + K+ + FGF+ + +A++A KL
Sbjct: 185 VYVKNFGEDLTEEALRDMFEKFGPITSHRVMTKDGKSRGFGFVAFEKPEDAEEAVQKLNG 244
Query: 170 ----DGHVLK-GRS---------LKIRFAPIN---------AAIKVKNLTSCVTNELLEL 206
DG VL GR+ LK RF + + VKNL + +E L
Sbjct: 245 KELSDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYHGVNLYVKNLDDTIDDERLRK 304
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F +G I A V++DE G SK G V F+ A +A+
Sbjct: 305 EFAPYGTITSAKVMLDE-GRSKGFGFVCFSAPDEATKAV 342
>gi|148224225|ref|NP_001084988.1| ribonucleoprotein, PTB-binding 1 [Xenopus laevis]
gi|47682299|gb|AAH70699.1| MGC83237 protein [Xenopus laevis]
Length = 694
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 66/134 (49%), Gaps = 2/134 (1%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDG 171
N ++ + + GDI+ ++ +L Y E + F++K K F+ + A+ A +
Sbjct: 63 NRRKILIKGLPGDISNQEVHDLLGDY-ELKYCFVDKYKGTAFVTLLNGEQAESAIRRFHQ 121
Query: 172 HVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGNSKCE 230
++ R + ++ P +A + + NL+ T + E FG++ER +I G K
Sbjct: 122 THIRDREISVQLQPTDALLCIANLSPTYTQQQFEDLVRPFGNLERCFLIYSSTTGRPKGY 181
Query: 231 GIVEFARKPAAAQA 244
G VE+ +K +A++A
Sbjct: 182 GFVEYMKKDSASRA 195
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFI------NKEKMFGFIRMDYKHNADKA 165
+ L + N+ T+ +L +P+G + F+ + K +GF+ K +A +A
Sbjct: 136 TDALLCIANLSPTYTQQQFEDLVRPFGNLERCFLIYSSTTGRPKGYGFVEYMKKDSASRA 195
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLE 205
K+ L G L R+L + ++ +N + C+ E L+
Sbjct: 196 KSDLLGRQLGSRTLYVHWSDVNQLTYELLHSHCLLVEQLQ 235
>gi|432896166|ref|XP_004076291.1| PREDICTED: uncharacterized protein LOC101157077 [Oryzias latipes]
Length = 515
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGH 172
N +L++GN+ D T +I ++F PYGE + ++ + F+ + + AD+A LDG
Sbjct: 5 NVKLFVGNLPIDATHEEISKIFSPYGEINTCSLLRQ--YAFVTLKGEGAADRAIRHLDGK 62
Query: 173 VLKGRSLKI---RFAPINAA-IKVKNLTSCVTNELLELAFGVFGDI 214
+GR L + R P N+ I V NL++ + + L F FG +
Sbjct: 63 EYRGRPLVVEESRARPPNSTKIFVGNLSATCSADDLHGLFSTFGRV 108
>gi|225718298|gb|ACO14995.1| Splicing factor, arginine/serine-rich 4 [Caligus clemensi]
Length = 234
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 73/176 (41%), Gaps = 43/176 (24%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDG 171
N RLYLGN+ + E D+ + FK YG+ +E+ + + +GF+ + +AD A LDG
Sbjct: 4 NQYRLYLGNVSDETRERDVEKFFKGYGKLREIAL--KNGYGFVEFEDHRDADDAVQDLDG 61
Query: 172 HVLKGRSLKIRF----------------------------APIN---------AAIKVKN 194
+ G +++ F API I+V+N
Sbjct: 62 KDMNGSRVRVEFARSPRDKRGGSRYPSTSSRRSPPRGRRGAPIKRNPPGRRTQYRIRVEN 121
Query: 195 LTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAE 250
L+S + + L+ F GD I + EG+VEF K A AL R +
Sbjct: 122 LSSRASWQDLKDYFRSCGD----ITYTNAHKPRNNEGVVEFGDKRAMENALDRLDD 173
>gi|190405722|gb|EDV08989.1| poly(A) binding protein [Saccharomyces cerevisiae RM11-1a]
Length = 262
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 71/144 (49%), Gaps = 14/144 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKL 169
LY+G++ ++E + ++F P G + + ++ + + ++ + KA +L
Sbjct: 40 LYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQL 99
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ +KGR +I ++ + +++ +KNL + N+ L F VFGDI + +
Sbjct: 100 NYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIAT 159
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE G SK G V F + AA +A+
Sbjct: 160 DENGKSKGFGFVHFEEEGAAKEAI 183
>gi|332374002|gb|AEE62142.1| unknown [Dendroctonus ponderosae]
Length = 634
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 74/147 (50%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ DITE + + F G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDITEAMLFDKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ +++GR ++I ++ + +++ +KNL + N+ + F FG+I V
Sbjct: 73 NFDLIRGRPIRIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQ 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE G SK G V F + AA +++ +
Sbjct: 133 DENGTSKGYGFVHFETEEAANKSIEKV 159
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 64/149 (42%), Gaps = 19/149 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + + F +G + ++ K +GF+ + + A+K+ K++
Sbjct: 101 VFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQDENGTSKGYGFVHFETEEAANKSIEKVN 160
Query: 171 GHVLKGRSLKI-RFAP-------------INAAIKVKNLTSCVTNELLELAFGVFGDIER 216
G +L G+ + + RF P + + VKN ++ E L F FG I
Sbjct: 161 GMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDLSEEQLRNMFEKFGKITS 220
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ + G SK G V F AA A+
Sbjct: 221 YKVMSKDDGKSKGFGFVAFESPEAAETAV 249
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 37/167 (22%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D++E + +F+ +G+ + K K FGF+ + A+ A L+
Sbjct: 194 VYVKNFGEDLSEEQLRNMFEKFGKITSYKVMSKDDGKSKGFGFVAFESPEAAETAVDALN 253
Query: 171 GHVL----------------KGRSLKIRFAPIN---------AAIKVKNLTSCVTNELLE 205
G L + + LK RF + + VKNL + +E L
Sbjct: 254 GKELVEGKPLYVGRAQKKAERQQELKRRFEALKMERLNRYQGVNLYVKNLDDTIDDERLR 313
Query: 206 LAFGVFGDIERAIVIVDERGN-------SKCEGIVEFARKPAAAQAL 245
F FG I A V+++E SK G V F+ A +A+
Sbjct: 314 KEFAPFGTITSAKVMIEENKTESFITTRSKGFGFVCFSSPEEATKAV 360
>gi|168018573|ref|XP_001761820.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686875|gb|EDQ73261.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 439
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 72/147 (48%), Gaps = 14/147 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKL 169
LY+G++ +++E + E+F G+ + + ++ + + ++ + +A +A L
Sbjct: 26 LYVGDLEPNVSEAQLYEMFSQVGQVVSIRVCRDLITRRSLGYSYVNYNNAQDATRALELL 85
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ + G+ ++I F+ + +I+ +KNL + N+ L F FG+I V
Sbjct: 86 NFTGVNGKPIRIMFSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFAAFGNILSCKVAT 145
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
D G SK G V+F ++ +A A+ +
Sbjct: 146 DASGQSKGYGFVQFEQEESAQNAIEKV 172
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 17/155 (10%)
Query: 108 IKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNA 162
I+ + +++ N+ I + + F +G + + K +GF++ + + +A
Sbjct: 106 IRKSGTANIFIKNLDKSIDNKALHDTFAAFGNILSCKVATDASGQSKGYGFVQFEQEESA 165
Query: 163 DKAKAKLDGHVLKGRSLKI----RFAPINAA--------IKVKNLTSCVTNELLELAFGV 210
A K++G +L + + + R + A + VKNL T++ L+ FG
Sbjct: 166 QNAIEKVNGMLLNDKQVFVGPFVRRQERDQAGGVSKFNNVYVKNLADVTTDDELKKVFGA 225
Query: 211 FGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+G I A+V+ D G SKC G V F AA+A+
Sbjct: 226 WGPISSAVVMRDNDGKSKCFGFVNFEHPDDAAKAV 260
>gi|355784464|gb|EHH65315.1| Polyadenylate-binding protein 1-like protein [Macaca fascicularis]
Length = 635
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 72/156 (46%), Gaps = 27/156 (17%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQEL---------FINKEKMFGFIRMDYKHNAD--- 163
LY+G++ D+TE + E F P G + F+ + G+ ++++ AD
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRFLPTRRSLGYAYINFQQPADGEE 72
Query: 164 ------KAKAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFG 209
+A ++ +LKG+ ++I ++ + ++ +KNL + N+ L F
Sbjct: 73 QAQRAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFS 132
Query: 210 VFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
FG+I V+ DE G S+ G V F AA QA+
Sbjct: 133 TFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAI 167
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + ++ FGF+ + A +A ++G
Sbjct: 113 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSRGFGFVHFETHEAAQQAINTMNG 172
Query: 172 HVLKGRSLKI--------RFAPINA------AIKVKNLTSCVTNELLELAFGVFGDIERA 217
+L R + + R A + A I VKNL V + L+ F FG +
Sbjct: 173 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSV 232
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G+S+C G V F + A +A+
Sbjct: 233 KVMRDNSGHSRCFGFVNFEKHEEAQKAV 260
>gi|300707142|ref|XP_002995792.1| hypothetical protein NCER_101231 [Nosema ceranae BRL01]
gi|239605007|gb|EEQ82121.1| hypothetical protein NCER_101231 [Nosema ceranae BRL01]
Length = 508
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 14/145 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKAKLDG 171
+Y+G++ E+D+ +F GE ++ + K F F+ AD+A + +
Sbjct: 14 IYVGDLSSKTLESDLFRIFSSIGEVVKIKLKKRIEPLSSFAFVTFANGDAADRAIKEYNN 73
Query: 172 HVLKGRSLKIRFAPI--------NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE 223
L ++ IR P +A + VKNL S TNE L F VFG I A +
Sbjct: 74 FRLNKKN--IRVLPCMDEKSKREDANLIVKNLPSSFTNENLYDTFSVFGTIISAKIATYA 131
Query: 224 RGNSKCEGIVEFARKPAAAQALRRC 248
G K G V+F +K +A A++ C
Sbjct: 132 DGKPKNYGFVQFDKKKSAKMAIKHC 156
>gi|119495558|ref|XP_001264561.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Neosartorya fischeri NRRL 181]
gi|119412723|gb|EAW22664.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Neosartorya fischeri NRRL 181]
Length = 477
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLK 175
Y+GN+ T+ND++ LF +G E + ++ F FI+MD NA A +L+G+ +
Sbjct: 311 CYVGNLTPYTTQNDLVPLFHNFGYVLETRLQADRGFAFIKMDTHENAAMAICQLNGYNVN 370
Query: 176 GRSLKIRF 183
GR LK +
Sbjct: 371 GRPLKCSW 378
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 19/149 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKMF-------GFIRMDYKHNADKAKAK 168
LY+G + +TE+ + ++F+ G Q + I +K F GF+ D A++A
Sbjct: 93 LYVGGLDPRVTEDILKQIFETTGHVQSVKIIPDKNFNSKGYNYGFVEFDDPGAAERAMQT 152
Query: 169 LDGHVLKGRSLKIRFA-----------PINAAIKVKNLTSCVTNELLELAFGVFGDIERA 217
L+G + +++ +A + I V +L++ V +E+L AF FG + A
Sbjct: 153 LNGRRIHQSEIRVNWAYQSNSTNKEDTSSHFHIFVGDLSNEVNDEILLQAFSAFGSVSEA 212
Query: 218 IVIVDER-GNSKCEGIVEFARKPAAAQAL 245
V+ D + G S+ G V F + A +AL
Sbjct: 213 RVMWDMKTGRSRGYGFVAFRERADAEKAL 241
>gi|380748929|ref|NP_001244132.1| nucleolysin TIAR isoform 2 [Gallus gallus]
gi|28883273|gb|AAO49720.1| TIA-1 [Gallus gallus]
Length = 372
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 15/147 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKAKLDG 171
LY+GN+ D+TE I++LF G + + + + F+ +A A A ++G
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFYEHRHAASALAAMNG 68
Query: 172 HVLKGRSLKIRFAPINAAIK----------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ G+ +K+ +A ++ K V +L+ +T E ++ AF FG I A V+
Sbjct: 69 RKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVK 128
Query: 222 D-ERGNSKCEGIVEFARKPAAAQALRR 247
D G SK G V F K A A+++
Sbjct: 129 DMATGKSKGYGFVSFFNKWDAENAIQQ 155
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 74/179 (41%), Gaps = 39/179 (21%)
Query: 101 SEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGE------TQELFINKEKMFGFI 154
+ P ++ +N+ +++G++ +IT DI F P+G +++ K K +GF+
Sbjct: 82 TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFV 141
Query: 155 RMDYKHNADKAKAKLDGHVLKGRSLKIRFA----------------------------PI 186
K +A+ A ++ G L GR ++ +A P
Sbjct: 142 SFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDDVVNQSSPS 201
Query: 187 NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
N + +TS +T +L+ F FG I I + ++G S V F +AA A+
Sbjct: 202 NCTVYCGGVTSGLTEQLMRQTFSPFGQIME-IRVFPDKGYS----FVRFNSHESAAHAI 255
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 39/72 (54%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDG 171
+NC +Y G + +TE + + F P+G+ E+ + +K + F+R + +A A ++G
Sbjct: 201 SNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNG 260
Query: 172 HVLKGRSLKIRF 183
++G +K +
Sbjct: 261 TTIEGHVVKCYW 272
>gi|223938031|ref|ZP_03629929.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
gi|223893245|gb|EEF59708.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
Length = 114
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAK 168
+LY+GN+ D TEND+ +LF +G E+ + +KM FGF+ M K AD A
Sbjct: 3 KLYIGNLSFDATENDVQDLFAQHGPVTEVNLIMDKMTGRARGFGFVTMSTKEGADAAVQN 62
Query: 169 LDGHVLKGRSLKI 181
L+G +GR+L +
Sbjct: 63 LNGKQWQGRALTV 75
>gi|359386152|gb|AEV43365.1| poly A-binding protein 2 [Citrus sinensis]
Length = 652
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGET------QELFINKEKMFGFIRMDYKHNADKAK 166
+ LY+G++ + ++ + +LF G+ ++L + +G++ + H A +A
Sbjct: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
+L+ L G+ ++I ++ + I+ +KNL + N+ L F FG+I
Sbjct: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V D G S+ G V+F + +A A+ +
Sbjct: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 65/151 (43%), Gaps = 25/151 (16%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKHNADKAKAKLD 170
+++ N+ I + + F +G + + + +GF++ D + +A A KL+
Sbjct: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
Query: 171 GHVLKGRSL----------------KIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDI 214
G +L + + K RF + VKNL+ T + L+ FG FG I
Sbjct: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFN----NVYVKNLSETTTEDDLKKIFGEFGII 245
Query: 215 ERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SKC G V F AA+++
Sbjct: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 33/161 (20%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N+ TE+D+ ++F +G + K K FGF+ D +A ++ L+
Sbjct: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
Query: 171 GHV--------------------LKGR---SLK---IRFAPINAAIKVKNLTSCVTNELL 204
G LKG+ SLK +F +N + VKNL ++++ L
Sbjct: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLN--LYVKNLDDSISDDKL 338
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ F FG I V+ D G S+ G V F+ A++AL
Sbjct: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKAL 379
>gi|397781445|ref|YP_006545918.1| RNA recognition motif-containing protein [Methanoculleus bourgensis
MS2]
gi|396939947|emb|CCJ37202.1| RNA recognition motif-containing protein [Methanoculleus bourgensis
MS2]
Length = 86
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGH 172
+ +LY+GN+ + E + ELF YG ++ + + K FGF+ M A+KAK L+
Sbjct: 3 SSKLYVGNLTYSVNEEQLKELFAQYGTVNDVRVIERKGFGFVEMSSPEEAEKAKEALNDT 62
Query: 173 VLKGRSLKI 181
V +GR+LKI
Sbjct: 63 VFEGRTLKI 71
>gi|395545876|ref|XP_003774823.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 621
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 76/147 (51%), Gaps = 15/147 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ ++D + +
Sbjct: 4 LYVGDLHHDVTEAMLYEKFSPAGPILSIRVCRDMITRSSLGYAYVNFQQSSDAQRVLETM 63
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ VKNL + N L AF FG+I V+
Sbjct: 64 NLDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLEKSIDNRALFDAFSGFGNILSCKVVS 123
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRC 248
DE G SK G V F + +A +A+ +
Sbjct: 124 DENG-SKGYGFVHFETQESAEKAIEKM 149
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 22/150 (14%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + + +A+KA K++G
Sbjct: 92 IFVKNLEKSIDNRALFDAFSGFGNILSCKVVSDENGSKGYGFVHFETQESAEKAIEKMNG 151
Query: 172 HVLKGRSLKIRFAPINA----------------AIKVKNLTSCVTNELLELAFGVFGDIE 215
VLK SLK+ + + +KN + N L FG FG
Sbjct: 152 IVLK--SLKVFVGHFKSRKERELELGARAREFTNVYIKNFGEDMDNARLGEIFGRFGRAL 209
Query: 216 RAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DERG SK G V +A A +A+
Sbjct: 210 SVKVMTDERGRSKGFGFVSYATHEDAQRAV 239
Score = 39.3 bits (90), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + E+F +G + + + K FGF+ +A +A +++
Sbjct: 184 VYIKNFGEDMDNARLGEIFGRFGRALSVKVMTDERGRSKGFGFVSYATHEDAQRAVDEMN 243
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L GR + + R+ +N + VKNL + +E L
Sbjct: 244 GKELNGRRIYVGRAQKKGERQTELKRHFEQIKQDRVTRYQGVN--LYVKNLDDTIDDERL 301
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G+S+ G V F+ AA+A+
Sbjct: 302 RTEFSPFGTITSAKVMM-EGGHSRGFGFVCFSAPDEAAKAV 341
>gi|74008013|ref|XP_549122.2| PREDICTED: polyadenylate-binding protein 5 [Canis lupus familiaris]
Length = 382
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 71/164 (43%), Gaps = 30/164 (18%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKA 165
A +++ N G D+ + + E+F YG T+ + + K K FGF+R + A KA
Sbjct: 196 ATFTNVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKA 255
Query: 166 KAKLDGHVLKGRSLKI--------RFA----------------PINAAIKVKNLTSCVTN 201
L G + G+ L + R A P I +KNL + +
Sbjct: 256 VLDLHGKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDD 315
Query: 202 ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
E L+ F FG I RA V+V E G K G+V F+ A +A+
Sbjct: 316 EKLKEEFSSFGSISRAKVMV-EVGQGKGFGVVCFSSFEDATKAV 358
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 68/142 (47%), Gaps = 15/142 (10%)
Query: 118 LGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKLDG 171
+G++ D+TE+ + + F+P G + I ++ + +G++ + +A+ A ++
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 172 HVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIVDE 223
++ G+ ++ ++ + ++ +KNL + N L F FG+I V+ D+
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 224 RGNSKCEGIVEFARKPAAAQAL 245
G SK V F AA +A+
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAI 162
>gi|74199920|dbj|BAE20776.1| unnamed protein product [Mus musculus]
Length = 266
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVS 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGHGFVHFETEEAAERAIEK 157
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K GF+ + + A++A K++G
Sbjct: 101 VFIKNLNKTIDNKALYDTFSAFGNILSCKVVSDENGSKGHGFVHFETEEAAERAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + K +KN + +E L FG FG I
Sbjct: 161 MLLNDRKVFVGRFKSQKEREAELGTGTKEFTNVYIKNFGDRMDDETLNGLFGRFGQILSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDEGGKSKGFGFVSFERHEDAQKAV 248
>gi|41581275|emb|CAE47924.1| oligouridylate binding protein, putative [Aspergillus fumigatus]
Length = 485
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLK 175
Y+GN+ T+ND++ LF +G E + ++ F FI+MD NA A +L+G+ +
Sbjct: 311 CYVGNLTPYTTQNDLVPLFHNFGYVLETRLQADRGFAFIKMDTHENAAMAICQLNGYNVN 370
Query: 176 GRSLKIRF 183
GR LK +
Sbjct: 371 GRPLKCSW 378
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 19/149 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKMF-------GFIRMDYKHNADKAKAK 168
LY+G + +TE+ + ++F+ G Q + I +K F GF+ D A++A
Sbjct: 93 LYVGGLDPRVTEDILKQIFETTGHVQSVKIIPDKNFNSKGYNYGFVEFDDPGAAERAMQT 152
Query: 169 LDGHVLKGRSLKIRFA-PINAA----------IKVKNLTSCVTNELLELAFGVFGDIERA 217
L+G + +++ +A N+A I V +L++ V +E+L AF FG + A
Sbjct: 153 LNGRRIHQSEIRVNWAYQSNSANKEDTSSHFHIFVGDLSNEVNDEILLQAFSAFGSVSEA 212
Query: 218 IVIVDER-GNSKCEGIVEFARKPAAAQAL 245
V+ D + G S+ G V F + A +AL
Sbjct: 213 RVMWDMKTGRSRGYGFVAFRERADAEKAL 241
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,882,869,931
Number of Sequences: 23463169
Number of extensions: 446173646
Number of successful extensions: 4041494
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6232
Number of HSP's successfully gapped in prelim test: 21677
Number of HSP's that attempted gapping in prelim test: 2960369
Number of HSP's gapped (non-prelim): 817580
length of query: 503
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 356
effective length of database: 8,910,109,524
effective search space: 3171998990544
effective search space used: 3171998990544
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 79 (35.0 bits)