BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy93
(503 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9GRW7|NONA_DROVI Protein no-on-transient A OS=Drosophila virilis GN=nonA PE=2 SV=1
Length = 697
Score = 354 bits (909), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 173/344 (50%), Positives = 238/344 (69%), Gaps = 28/344 (8%)
Query: 79 GGDRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYG 138
G D ++++++ +I GPT +LPP E ++ KF+ RLY+GN+ DIT+ ++ E+FKPYG
Sbjct: 251 GDDFFYSQRLRSISGPTHELPPIEVA-QETKFSGRNRLYVGNLTNDITDEELREMFKPYG 309
Query: 139 ETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSC 198
E E+F N EK F F+++DY NA+KAK LDG + KGR +++RFAP ++V NLT
Sbjct: 310 EIGEIFSNLEKNFTFLKVDYHINAEKAKRPLDGSMRKGRHVRVRFAPNATILRVSNLTPF 369
Query: 199 VTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQS 258
V+NELL +F +FG IERA + VD+RG EG VEFA+K +A+ LR C E CFFLT S
Sbjct: 370 VSNELLYKSFEIFGPIERASITVDDRGKHLGEGTVEFAKKSSASACLRLCNEKCFFLTAS 429
Query: 259 LRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHEL 318
LRP +VEP+E+ D+ DGL E+ +NKK EF ++R VGPRFA +NSFE EYGSRWKQLH+L
Sbjct: 430 LRPCLVEPMEVNDDNDGLPEKALNKKLQEFNQERSVGPRFADLNSFEHEYGSRWKQLHDL 489
Query: 319 ---------------------------YEHETEMLRKELAQREIDRERQKAEWEMKERQA 351
YE ETE+LR+EL +RE D ER+K EWEM+E+QA
Sbjct: 490 FKSKQDALKRELKMEEEKLDAQMEYARYEQETELLRQELRKRESDNERKKLEWEMREKQA 549
Query: 352 EELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQ 395
EE+++R+EE M++H EMQ R+ +QEED+RRRQ +N++F+ QQ
Sbjct: 550 EEMRKREEETMRRHQTEMQSRMVRQEEDMRRRQQENTLFMQAQQ 593
>sp|Q9GRX4|NONA_DROLR Protein no-on-transient A OS=Drosophila littoralis GN=nonA PE=2
SV=1
Length = 698
Score = 348 bits (894), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 171/344 (49%), Positives = 235/344 (68%), Gaps = 28/344 (8%)
Query: 79 GGDRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYG 138
G D + +++ +I GPT +LPP E ++ KF+ RLY+GN+ DIT+ ++ E+FKPYG
Sbjct: 247 GDDFFIAQRLRSISGPTHELPPIEVA-QETKFSGRNRLYVGNLTNDITDEELREMFKPYG 305
Query: 139 ETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSC 198
E E+F N EK F F+++DY NA+KAK LDG + KGR L++RFAP ++V NLT
Sbjct: 306 EIGEIFSNLEKNFTFLKVDYHINAEKAKRALDGSMRKGRQLRVRFAPNATILRVSNLTPF 365
Query: 199 VTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQS 258
V+NELL +F +FG IERA + VD+RG EG VEFA+K +A+ LR C E CFFLT S
Sbjct: 366 VSNELLYKSFEIFGPIERASITVDDRGKHLGEGTVEFAKKSSASACLRLCNEKCFFLTAS 425
Query: 259 LRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHEL 318
LRP +VEP+E+ D+ DGL E+ +NKK EF ++R VGPRFA +NSFE EYGSRWKQLH+L
Sbjct: 426 LRPCLVEPMEVNDDNDGLPEKALNKKLQEFNQERSVGPRFADLNSFEHEYGSRWKQLHDL 485
Query: 319 YE---------------------------HETEMLRKELAQREIDRERQKAEWEMKERQA 351
++ ETE+ R+EL +RE D ER+K EWEM+E+QA
Sbjct: 486 FKSKQDALKRELKMEEEKLDAQMEYARYGQETELSRQELRKRESDNERKKLEWEMREKQA 545
Query: 352 EELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQ 395
EE+++R+EE M++H EMQ R+ +QEED+RRRQ +N++F+ QQ
Sbjct: 546 EEMRKREEETMRRHQTEMQSRMVRQEEDMRRRQQENTLFMQAQQ 589
>sp|Q04047|NONA_DROME Protein no-on-transient A OS=Drosophila melanogaster GN=nonA PE=1
SV=2
Length = 700
Score = 346 bits (887), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 168/342 (49%), Positives = 232/342 (67%), Gaps = 29/342 (8%)
Query: 81 DRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGET 140
D + T+++ +I GPT +L P E + KF+ RLY+GN+ DIT++++ E+FKPYGE
Sbjct: 270 DFFITQRLRSISGPTFELEPVEVP-TETKFSGRNRLYVGNLTNDITDDELREMFKPYGEI 328
Query: 141 QELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVT 200
E+F N +K F F+++DY NA+KAK LDG + KGR L++RFAP ++V NLT V+
Sbjct: 329 SEIFSNLDKNFTFLKVDYHPNAEKAKRALDGSMRKGRQLRVRFAPNATILRVSNLTPFVS 388
Query: 201 NELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLR 260
NELL +F +FG IERA + VD+RG EGIVEFA+K +A+ LR C E CFFLT SLR
Sbjct: 389 NELLYKSFEIFGPIERASITVDDRGKHMGEGIVEFAKKSSASACLRMCNEKCFFLTASLR 448
Query: 261 PVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHEL-- 318
P +V+P+E+ D+ DGL E+ NKK P+F ++R +GPRFA NSFE EYGSRWKQLH L
Sbjct: 449 PCLVDPMEVNDDTDGLPEKAFNKKMPDFNQERSIGPRFADPNSFEHEYGSRWKQLHNLFK 508
Query: 319 -------------------------YEHETEMLRKELAQREIDRERQKAEWEMKERQAEE 353
YE ETE+LR+EL +RE+D ER+K EWEM+E+QAEE
Sbjct: 509 TKQDALKRELKMEEDKLEAQMEYARYEQETELLRQELRKREVDNERKKLEWEMREKQAEE 568
Query: 354 LKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQ 395
+++R+EE M++H EMQ + +QEED+ RRQ + ++F+ QQ
Sbjct: 569 MRKREEETMRRHQTEMQSHMNRQEEDMLRRQQE-TLFMKAQQ 609
>sp|Q9U1N0|HRP65_CHITE Hrp65 protein OS=Chironomus tentans GN=HRP65 PE=1 SV=1
Length = 535
Score = 329 bits (843), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 161/336 (47%), Positives = 230/336 (68%), Gaps = 29/336 (8%)
Query: 87 KIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN 146
K+ + GPT DLP E ++IKF+ RLY+GN+ D+TE ++ ELF PYGE E FIN
Sbjct: 88 KLKNLAGPTHDLP--ELVCEEIKFSGRNRLYIGNLTSDVTEEELKELFSPYGEISEAFIN 145
Query: 147 KEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLEL 206
EK F F+++DY+ NA++AK LDG + K + ++IRFAP I+VKNLT V+NELL
Sbjct: 146 AEKNFAFLKIDYRANAERAKKDLDGRMRKNKPIRIRFAPNATTIRVKNLTPFVSNELLFK 205
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEP 266
+F VFG +ERA++IVD+RG + EGIVEFARK A AL+ C+E C+FLT SLRP +VE
Sbjct: 206 SFEVFGQVERAVIIVDDRGKTTGEGIVEFARKSGAMSALKYCSEKCYFLTSSLRPCVVET 265
Query: 267 LELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELY------- 319
+ DE DG E+++ +K+ ++YK RQ GPRFA + SFE E+G++WKQ++++Y
Sbjct: 266 FDHIDETDGFPEKSLMRKSNDYYKARQNGPRFAEMGSFEHEFGTKWKQMYDMYKQKHDAL 325
Query: 320 --------------------EHETEMLRKELAQREIDRERQKAEWEMKERQAEELKRRDE 359
EHETE LR++L +RE DR+RQK EWE +ERQA+E + RDE
Sbjct: 326 KREMQLEEEKLEAQMEYAKFEHETESLREQLRKREQDRDRQKKEWEDRERQADESRIRDE 385
Query: 360 ELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQ 395
+ M++ ++MQ+R+ +Q+E++RRRQ +NS+F+ QQ
Sbjct: 386 QQMRRQQDDMQMRMQRQDEEMRRRQQENSLFMQAQQ 421
>sp|P23246|SFPQ_HUMAN Splicing factor, proline- and glutamine-rich OS=Homo sapiens
GN=SFPQ PE=1 SV=2
Length = 707
Score = 242 bits (617), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 178/274 (64%), Gaps = 9/274 (3%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 293 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 352
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 353 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 412
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 413 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 471
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FE+EY RWK L E+ + + E + K + + D+ + E E
Sbjct: 472 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEH 530
Query: 350 QA----EELKRRDEELMKK---HAEEMQLRLAQQ 376
QA ++L RR EEL + H +EMQ R Q
Sbjct: 531 QANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQ 564
>sp|Q8VIJ6|SFPQ_MOUSE Splicing factor, proline- and glutamine-rich OS=Mus musculus
GN=Sfpq PE=1 SV=1
Length = 699
Score = 242 bits (617), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 179/274 (65%), Gaps = 9/274 (3%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 285 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 344
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 345 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 404
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 405 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 463
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FE+EY RWK L E+ + + E + K + + D+ + E E
Sbjct: 464 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEH 522
Query: 350 QA----EELKRRDEELMKK---HAEEMQLRLAQQ 376
QA ++L RR EEL + H++EMQ R Q
Sbjct: 523 QANLLRQDLMRRQEELRRMEELHSQEMQKRKEMQ 556
>sp|Q5ZK88|PSPC1_CHICK Paraspeckle component 1 OS=Gallus gallus GN=PSPC1 PE=2 SV=1
Length = 523
Score = 240 bits (613), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 122/253 (48%), Positives = 170/253 (67%), Gaps = 12/253 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 77 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 136
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +ERA+V+VD+RG +
Sbjct: 137 DGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVERAVVVVDDRGRATG 196
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G VEFA KP A +AL RC++G F LT + RPV+VEP+E D+ DGL E+ + +KT +++
Sbjct: 197 KGFVEFAAKPPARKALERCSDGAFLLTTTPRPVVVEPMEQFDDEDGLPEKLM-QKTQQYH 255
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FEFEY SRWK L E+ E ++E R I ++K E EM
Sbjct: 256 KEREQPPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEKLEAEM--- 307
Query: 350 QAEELKRRDEELM 362
E R + +LM
Sbjct: 308 ---EAARHEHQLM 317
>sp|Q1LZD9|PSPC1_BOVIN Paraspeckle component 1 OS=Bos taurus GN=PSPC1 PE=2 SV=1
Length = 520
Score = 239 bits (611), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 122/253 (48%), Positives = 170/253 (67%), Gaps = 12/253 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE+D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 75 YTQRCRLFVGNLPTDITEDDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 134
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +E+A+V+VD+RG +
Sbjct: 135 DGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATG 194
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G VEFA KP A +AL RC +G F LT + RPVIVEP+E D+ DGL E+ + +KT +++
Sbjct: 195 KGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM-QKTQQYH 253
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FEFEY SRWK L E+ E ++E R I ++K E EM
Sbjct: 254 KEREQPPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEKLEAEM--- 305
Query: 350 QAEELKRRDEELM 362
E R + +LM
Sbjct: 306 ---EAARHEHQLM 315
>sp|Q4KLH4|PSPC1_RAT Paraspeckle component 1 OS=Rattus norvegicus GN=Pspc1 PE=2 SV=1
Length = 522
Score = 238 bits (608), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 122/253 (48%), Positives = 169/253 (66%), Gaps = 12/253 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 77 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 136
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +E+A+V+VD+RG +
Sbjct: 137 DGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATG 196
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G VEFA KP A +AL RC +G F LT + RPVIVEP+E D+ DGL E+ + +KT +++
Sbjct: 197 KGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM-QKTQQYH 255
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FEFEY SRWK L E+ E ++E R I ++K E EM
Sbjct: 256 KEREQPPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEKLEAEM--- 307
Query: 350 QAEELKRRDEELM 362
E R + +LM
Sbjct: 308 ---EAARHEHQLM 317
>sp|Q8R326|PSPC1_MOUSE Paraspeckle component 1 OS=Mus musculus GN=Pspc1 PE=1 SV=1
Length = 523
Score = 238 bits (607), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 122/253 (48%), Positives = 169/253 (66%), Gaps = 12/253 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 77 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 136
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +E+A+V+VD+RG +
Sbjct: 137 DGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATG 196
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G VEFA KP A +AL RC +G F LT + RPVIVEP+E D+ DGL E+ + +KT +++
Sbjct: 197 KGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM-QKTQQYH 255
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FEFEY SRWK L E+ E ++E R I ++K E EM
Sbjct: 256 KEREQPPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEKLEAEM--- 307
Query: 350 QAEELKRRDEELM 362
E R + +LM
Sbjct: 308 ---EAARHEHQLM 317
>sp|Q8WXF1|PSPC1_HUMAN Paraspeckle component 1 OS=Homo sapiens GN=PSPC1 PE=1 SV=1
Length = 523
Score = 238 bits (606), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 122/253 (48%), Positives = 169/253 (66%), Gaps = 12/253 (4%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE D LF+ YGE E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 78 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAEL 137
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG +LK R L+IRFA AA+ VKNL+ V+NELLE AF FG +E+A+V+VD+RG +
Sbjct: 138 DGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATG 197
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G VEFA KP A +AL RC +G F LT + RPVIVEP+E D+ DGL E+ + +KT +++
Sbjct: 198 KGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM-QKTQQYH 256
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FEFEY SRWK L E+ E ++E R I ++K E EM
Sbjct: 257 KEREQPPRFAQPGTFEFEYASRWKALDEM-----EKQQREQVDRNIREAKEKLEAEM--- 308
Query: 350 QAEELKRRDEELM 362
E R + +LM
Sbjct: 309 ---EAARHEHQLM 318
>sp|Q1JPY8|PSPC1_DANRE Paraspeckle component 1 OS=Danio rerio GN=pspc1 PE=2 SV=1
Length = 512
Score = 232 bits (592), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 130/296 (43%), Positives = 189/296 (63%), Gaps = 18/296 (6%)
Query: 101 SEPQ--NKDIK---------FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEK 149
SEPQ DIK F CRL++GN+ D+ + D +LF YG+ +E+FIN+++
Sbjct: 52 SEPQEMTVDIKNFRRPGEKTFTQRCRLFVGNLPSDMADEDFKKLFFKYGDAKEVFINRDR 111
Query: 150 MFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFG 209
FGFIR++ + A+ AKA+LDG VL R ++IRFA AA+ V+NL+ V+NELLE AF
Sbjct: 112 GFGFIRLETRTLAEIAKAELDGTVLGNRPIRIRFATHGAALTVRNLSPVVSNELLEQAFS 171
Query: 210 VFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLEL 269
FG +ERAIVIVD+RG +GIVEFA KPAA +AL CA+G LT S RPVI+EP E
Sbjct: 172 QFGPVERAIVIVDDRGRPTGKGIVEFANKPAARKALDHCADGALLLTTSPRPVILEPTEQ 231
Query: 270 TDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKE 329
D+ DGL E+ + +K+ +++K+R+ P FA +FEFEY SRWK L E+ + + +E
Sbjct: 232 YDDEDGLPEKLL-QKSAQYHKEREHKPHFAQPGTFEFEYSSRWKALDEMDKQQ-----RE 285
Query: 330 LAQREIDRERQKAEWEMK-ERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQ 384
+R I ++K E EM+ +Q +L ++LM++ E +L + +E +R+Q
Sbjct: 286 QVERNIQEAKEKLETEMEAAKQEHQLMMMRQDLMRRQEELRRLEELRNQELQKRKQ 341
>sp|Q5FVM4|NONO_RAT Non-POU domain-containing octamer-binding protein OS=Rattus
norvegicus GN=Nono PE=2 SV=3
Length = 476
Score = 221 bits (564), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 122/274 (44%), Positives = 177/274 (64%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 75 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 134
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 135 DNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 194
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC+EG F LT RPV VEP++ D+ +GL E+ + K +F+
Sbjct: 195 KGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFH 253
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA SFE+EY RWK L E+ + + + + R I R+K E EM+
Sbjct: 254 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQV-----DRNIKEAREKLEMEMEAA 308
Query: 350 QAE--------ELKRRDEELMKK---HAEEMQLR 372
+ E +L RR EEL + H +E+Q R
Sbjct: 309 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 342
>sp|Q99K48|NONO_MOUSE Non-POU domain-containing octamer-binding protein OS=Mus musculus
GN=Nono PE=1 SV=3
Length = 473
Score = 221 bits (564), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 122/274 (44%), Positives = 177/274 (64%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 72 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 131
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 132 DNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 191
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC+EG F LT RPV VEP++ D+ +GL E+ + K +F+
Sbjct: 192 KGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFH 250
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA SFE+EY RWK L E+ + + + + R I R+K E EM+
Sbjct: 251 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQV-----DRNIKEAREKLEMEMEAA 305
Query: 350 QAE--------ELKRRDEELMKK---HAEEMQLR 372
+ E +L RR EEL + H +E+Q R
Sbjct: 306 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 339
>sp|Q5RFL9|NONO_PONAB Non-POU domain-containing octamer-binding protein OS=Pongo abelii
GN=NONO PE=2 SV=3
Length = 471
Score = 221 bits (564), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 122/274 (44%), Positives = 177/274 (64%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 70 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 129
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 130 DNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 189
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC+EG F LT RPV VEP++ D+ +GL E+ + K +F+
Sbjct: 190 KGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFH 248
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA SFE+EY RWK L E+ + + + + R I R+K E EM+
Sbjct: 249 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQV-----DRNIKEAREKLEMEMEAA 303
Query: 350 QAE--------ELKRRDEELMKK---HAEEMQLR 372
+ E +L RR EEL + H +E+Q R
Sbjct: 304 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 337
>sp|Q15233|NONO_HUMAN Non-POU domain-containing octamer-binding protein OS=Homo sapiens
GN=NONO PE=1 SV=4
Length = 471
Score = 221 bits (564), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 122/274 (44%), Positives = 177/274 (64%), Gaps = 17/274 (6%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +L
Sbjct: 70 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 129
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D L+G+ L++RFA +A++ V+NL V+NELLE AF VFG +ERA+VIVD+RG
Sbjct: 130 DNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSG 189
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +AL RC+EG F LT RPV VEP++ D+ +GL E+ + K +F+
Sbjct: 190 KGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQ-QFH 248
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA SFE+EY RWK L E+ + + + + R I R+K E EM+
Sbjct: 249 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQV-----DRNIKEAREKLEMEMEAA 303
Query: 350 QAE--------ELKRRDEELMKK---HAEEMQLR 372
+ E +L RR EEL + H +E+Q R
Sbjct: 304 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKR 337
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 91/206 (44%), Gaps = 27/206 (13%)
Query: 63 DGRGSDMNESRMGGGGGGD------RYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRL 116
D SD+ + M GG FT + + GPT PQ + L
Sbjct: 11 DQLTSDLANANMNGGEKTTVNTNVGASFTGEEIDTAGPTPSSAAPHPQA-------SASL 63
Query: 117 YLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KAKAKLD 170
Y+G + +TE + ELF G + + ++ + G+ ++Y AD KA +L+
Sbjct: 64 YVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELN 123
Query: 171 GHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIVD 222
++KGR +I ++ + A++ +KNL + N+ L F FG+I V D
Sbjct: 124 YTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD 183
Query: 223 ERGNSKCEGIVEFARKPAAAQALRRC 248
E GNSK G V + AA+QA++
Sbjct: 184 ENGNSKGYGFVHYETDEAASQAIKHV 209
Score = 40.0 bits (92), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 34/144 (23%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI------NKEKMFGFIRMDYKHNADK 164
AN +Y+ NI ++T+++ LF+ YG+ + K + FGF+ +A K
Sbjct: 239 ANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASK 298
Query: 165 AKAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSC 198
A +L+ G++L + ++ +N + +KNL
Sbjct: 299 AVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVN--LYIKNLDDE 356
Query: 199 VTNELLELAFGVFGDIERAIVIVD 222
V +E L F FG I A V+ D
Sbjct: 357 VDDEKLRQLFSEFGPITSAKVMRD 380
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 80/170 (47%), Gaps = 21/170 (12%)
Query: 93 GPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-- 150
GPT PQ+ + LY+G + +TE + ELF G + + ++ +
Sbjct: 51 GPTPSSAAPHPQS-------SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITR 103
Query: 151 --FGFIRMDYKHNAD--KAKAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSC 198
G+ ++Y +D KA +L+ ++KGR +I ++ + A++ +KNL
Sbjct: 104 RSLGYAYVNYNSTSDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVA 163
Query: 199 VTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
+ N+ L F FG+I V DE GNSK G V + AAAQA++
Sbjct: 164 IDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHV 213
Score = 37.0 bits (84), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 33/143 (23%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKA 165
AN +Y+ NI + T+ + +LF YG+ + K + FGF+ A KA
Sbjct: 243 ANFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKA 302
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+L+G +G+ L + ++ +N + +KNL +
Sbjct: 303 VEELNGKEFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVN--LYIKNLADDI 360
Query: 200 TNELLELAFGVFGDIERAIVIVD 222
++ L F +G I A V+ D
Sbjct: 361 DDDKLRQMFSEYGPITSAKVMRD 383
Score = 34.7 bits (78), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/149 (20%), Positives = 62/149 (41%), Gaps = 19/149 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + + F +G + ++ K +GF+ + A +A ++
Sbjct: 155 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVN 214
Query: 171 GHVLKGRSLKI-----------RFAPINAA---IKVKNLTSCVTNELLELAFGVFGDIER 216
+L + + + +F + A I VKN++ T+E F +GD+
Sbjct: 215 NMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNIYVKNISLEATDEEFRDLFAKYGDVTS 274
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ + D G S+ G V F AA+A+
Sbjct: 275 SSLARDSEGKSRGFGFVNFTTHECAAKAV 303
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 75/150 (50%), Gaps = 14/150 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KAK 166
+ LY+G + +TE + ELF G + + ++ + G+ ++Y AD KA
Sbjct: 59 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 118
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
+L+ ++KGR +I ++ + A++ +KNL + + N+ L F FG+I
Sbjct: 119 EELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCK 178
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA+QA++
Sbjct: 179 VAQDEHGNSKGYGFVHYETDEAASQAIKHV 208
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 66/149 (44%), Gaps = 19/149 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + + F +G + ++ K +GF+ + A +A ++
Sbjct: 150 IFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVN 209
Query: 171 GHVLKGRSLKI-----------RFAPINAA---IKVKNLTSCVTNELLELAFGVFGDIER 216
G +L + + + +F + A + VKN+ + VT+E F FG++
Sbjct: 210 GMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTS 269
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ + D+ G S+ G V F AAAQA+
Sbjct: 270 SSLARDQEGKSRGFGFVNFTTHEAAAQAV 298
Score = 38.9 bits (89), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 33/143 (23%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKA 165
AN +Y+ NI ++T+ + ELF +GE + K + FGF+ A +A
Sbjct: 238 ANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQA 297
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+L+G +G+ L + ++ +N + +KNL V
Sbjct: 298 VDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVN--LYIKNLGDDV 355
Query: 200 TNELLELAFGVFGDIERAIVIVD 222
++ L F +G I A V+ D
Sbjct: 356 DDDKLRAMFSEYGPITSAKVMRD 378
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 80/163 (49%), Gaps = 16/163 (9%)
Query: 100 PSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIR 155
P+ P N + ++ LY+G + +TE + ELF G+ + + ++ + G+
Sbjct: 39 PTSPNNNNQ--PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAY 96
Query: 156 MDYKHNAD--KAKAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLE 205
++Y + AD +A L+ ++KG+ +I ++ + A++ +KNL S + N+ L
Sbjct: 97 VNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALH 156
Query: 206 LAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
F FG+I V DE GNSK G V + AA A++
Sbjct: 157 DTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHV 199
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 62/151 (41%), Gaps = 33/151 (21%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKA 165
AN +Y+ NI D+TE + ++F+ +GE ++ K + FGF+ +A A
Sbjct: 229 ANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHESAQAA 288
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
++ +K + L + ++ +N + VKNLT V
Sbjct: 289 VDEMHDKEVKTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVN--LYVKNLTDDV 346
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCE 230
+E L FG +G I A V+ D + E
Sbjct: 347 DDEKLRELFGPYGTITSAKVMRDSTPAERTE 377
Score = 36.2 bits (82), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 63/150 (42%), Gaps = 21/150 (14%)
Query: 116 LYLGNIGGDITENDIIELFKPYGE------TQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+++ N+ I + + F +G Q+ F N K +GF+ + A+ A +
Sbjct: 141 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNS-KGYGFVHYETAEAANNAIKHV 199
Query: 170 DGHVLKGRSLKI-----------RFAPINAA---IKVKNLTSCVTNELLELAFGVFGDIE 215
+G +L + + + +F + A I +KN+ VT E F FG+I
Sbjct: 200 NGMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEIT 259
Query: 216 RAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
A + D G S+ G V ++ +A A+
Sbjct: 260 SATLSRDPEGKSRGFGFVNYSTHESAQAAV 289
>sp|Q9CW46|RAVR1_MOUSE Ribonucleoprotein PTB-binding 1 OS=Mus musculus GN=Raver1 PE=1 SV=2
Length = 748
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 79/161 (49%), Gaps = 9/161 (5%)
Query: 92 QGPTLDLPPSEPQ-------NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELF 144
+ P +LPP +P+ + + +F N ++ + + GD+T ++ +L Y E + F
Sbjct: 30 RAPEQELPPLDPEEIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDY-ELKYCF 88
Query: 145 INKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELL 204
++K K F+ + A+ A L+ R L ++ P +A + V NL +T
Sbjct: 89 VDKYKGTAFVTLLNGEQAEAAINTFHQSRLRERELSVQLQPTDALLCVANLPPSLTQAQF 148
Query: 205 ELAFGVFGDIERAIVIVDER-GNSKCEGIVEFARKPAAAQA 244
E FG +ER ++ ER G+SK G E+ +K +AA+A
Sbjct: 149 EELVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARA 189
Score = 40.4 bits (93), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 6/116 (5%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFI------NKEKMFGFIRMDYKHNADKA 165
+ L + N+ +T+ EL +P+G + F+ K +GF K +A +A
Sbjct: 130 TDALLCVANLPPSLTQAQFEELVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARA 189
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIV 221
K+ L G L R+L + + + C+ + L F + RA+ +V
Sbjct: 190 KSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDHLPPGFSDVDALRRALSVV 245
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
++ LY+G + +TE + ELF G+ + + ++ + G+ ++Y + AD +A
Sbjct: 53 HSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 112
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
L+ ++KGR +I ++ + A++ +KNL + + N+ L F FG+I
Sbjct: 113 LEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSC 172
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA A++
Sbjct: 173 KVAQDEFGNSKGYGFVHYETAEAAQNAIKHV 203
Score = 42.0 bits (97), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 56/142 (39%), Gaps = 30/142 (21%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI------NKEKMFGFIRMDYKHNADK 164
AN +Y+ NI D TE + +LF+ +GE + K + FGF+ NA
Sbjct: 233 ANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAA 292
Query: 165 AKAKLDGHVLKGRSLKI-----------------RFAPINAAIK-------VKNLTSCVT 200
A L+ KG+ L + A I A K +KNL+ +
Sbjct: 293 AVEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDID 352
Query: 201 NELLELAFGVFGDIERAIVIVD 222
+E L F +G I A V+ D
Sbjct: 353 DEKLRELFSSYGTITSAKVMRD 374
>sp|Q8IY67|RAVR1_HUMAN Ribonucleoprotein PTB-binding 1 OS=Homo sapiens GN=RAVER1 PE=1 SV=1
Length = 606
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 79/161 (49%), Gaps = 9/161 (5%)
Query: 92 QGPTLDLPPSEPQ-------NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELF 144
+ P +LPP +P+ + + +F N ++ + + GD+T ++ +L Y E + F
Sbjct: 30 RAPEEELPPLDPEEIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDY-ELKYCF 88
Query: 145 INKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELL 204
++K K F+ + A+ A L+ R L ++ P +A + V NL +T +
Sbjct: 89 VDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQF 148
Query: 205 ELAFGVFGDIERAIVIVDER-GNSKCEGIVEFARKPAAAQA 244
E FG +ER ++ ER G SK G E+ +K +AA+A
Sbjct: 149 EELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARA 189
Score = 39.3 bits (90), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 6/112 (5%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI------NKEKMFGFIRMDYKHNADKAKAKL 169
L + N+ +T+ EL +P+G + F+ + K +GF K +A +AK+ L
Sbjct: 134 LCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDL 193
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIV 221
G L R+L + + + C+ + L F + RA+ V
Sbjct: 194 LGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAV 245
>sp|Q5XI28|RAVR1_RAT Ribonucleoprotein PTB-binding 1 OS=Rattus norvegicus GN=Raver1 PE=2
SV=1
Length = 748
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 9/159 (5%)
Query: 94 PTLDLPPSEPQ-------NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN 146
P +LPP +P+ + + +F N ++ + + GD+T ++ +L Y E + F++
Sbjct: 32 PEQELPPLDPEEIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDY-ELKYCFVD 90
Query: 147 KEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLEL 206
K K F+ + A+ A L+ R L ++ P +A + V NL +T E
Sbjct: 91 KYKGTAFVTLLNGEQAEAAINTFHQSRLRERELSVQLQPTDALLCVANLPPSLTQAQFEE 150
Query: 207 AFGVFGDIERAIVIVDER-GNSKCEGIVEFARKPAAAQA 244
FG +ER ++ ER G+SK G E+ +K +AA+A
Sbjct: 151 LVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARA 189
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
++ LY+G + +TE + ELF G+ + + ++ + G+ ++Y + AD +A
Sbjct: 47 HSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 106
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
L+ ++KG+ +I ++ + A++ +KNL S + N+ L F FG+I
Sbjct: 107 LEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSC 166
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA A++
Sbjct: 167 KVAQDEFGNSKGYGFVHYETAEAANNAIKHV 197
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 33/143 (23%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKA 165
AN +Y+ NI D+TE + ELF+ +GE ++ K + FGF+ +A A
Sbjct: 227 ANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAA 286
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+++ ++ + L + ++ +N + VKNLT V
Sbjct: 287 VDEMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVN--LYVKNLTDDV 344
Query: 200 TNELLELAFGVFGDIERAIVIVD 222
+E L FG +G I A V+ D
Sbjct: 345 DDEKLRELFGPYGTITSAKVMRD 367
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
++ LY+G + +TE + ELF G+ + + ++ + G+ ++Y + AD +A
Sbjct: 52 HSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 111
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
L+ ++KG+ +I ++ + A++ +KNL S + N+ L F FG+I
Sbjct: 112 LEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSC 171
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA A++
Sbjct: 172 KVAQDEFGNSKGYGFVHYETAEAANNAIKHV 202
Score = 38.9 bits (89), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 30/143 (20%), Positives = 61/143 (42%), Gaps = 33/143 (23%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKA 165
AN +Y+ N+ +I +++ ++F+ +GE ++ K + FGF+ +A A
Sbjct: 232 ANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAA 291
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+++ ++ + L + ++ +N + VKNLT +
Sbjct: 292 VEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVN--LYVKNLTDDI 349
Query: 200 TNELLELAFGVFGDIERAIVIVD 222
+E L FG +G I A V+ D
Sbjct: 350 DDEKLRELFGPYGTITSAKVMRD 372
Score = 37.7 bits (86), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 65/150 (43%), Gaps = 21/150 (14%)
Query: 116 LYLGNIGGDITENDIIELFKPYGE------TQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+++ N+ I + + F +G Q+ F N K +GF+ + A+ A +
Sbjct: 144 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHV 202
Query: 170 DGHVLKGRSLKI-----------RFAPINAA---IKVKNLTSCVTNELLELAFGVFGDIE 215
+G +L + + + +F + A + +KNL S + ++ F FG+I
Sbjct: 203 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEIT 262
Query: 216 RAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
A + D+ G S+ G V F+ +A A+
Sbjct: 263 SATLSRDQEGKSRGFGFVNFSTHESAQAAV 292
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 65.9 bits (159), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 84/176 (47%), Gaps = 20/176 (11%)
Query: 87 KIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN 146
++ A++ + PS Q ++ LY+G + +TE + ELF G+ + +
Sbjct: 31 EVTAVESASPSTTPSASQ------PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVC 84
Query: 147 KEKM----FGFIRMDYKHNAD--KAKAKLDGHVLKGRSLKIRFAPINAAIK--------V 192
++ + G+ ++Y + AD +A L+ ++KG+ +I ++ + A++ +
Sbjct: 85 RDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFI 144
Query: 193 KNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
KNL + + N+ L F FG+I V DE GNSK G V + AA A++
Sbjct: 145 KNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHV 200
Score = 42.4 bits (98), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 33/143 (23%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKA 165
AN +Y+ NI ++T+ + ++F+ +GE ++ K + FGF+ +A A
Sbjct: 230 ANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAA 289
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+++ +KG+ L + ++ +N + VKNLT V
Sbjct: 290 VDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVN--LYVKNLTDDV 347
Query: 200 TNELLELAFGVFGDIERAIVIVD 222
+E L F FG I A V+ D
Sbjct: 348 DDEKLRELFSPFGTITSAKVMRD 370
Score = 38.5 bits (88), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 65/150 (43%), Gaps = 21/150 (14%)
Query: 116 LYLGNIGGDITENDIIELFKPYGE------TQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+++ N+ I + + F +G Q+ F N K +GF+ + A+ A +
Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNS-KGYGFVHYETAEAANNAIKHV 200
Query: 170 DGHVLKGRSLKI-----------RFAPINAA---IKVKNLTSCVTNELLELAFGVFGDIE 215
+G +L + + + +F + A + +KN+ VT+E F FG+I
Sbjct: 201 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEIT 260
Query: 216 RAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
A + D+ G S+ G V F+ +A A+
Sbjct: 261 SATLSRDQEGKSRGFGFVNFSTHDSAQAAV 290
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 65.5 bits (158), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
++ LY+G + +TE + ELF G+ + + ++ + G+ ++Y + AD +A
Sbjct: 46 HSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 105
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
L+ ++KG+ +I ++ + A++ +KNL + + N+ L F FG+I
Sbjct: 106 LEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSC 165
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA A++
Sbjct: 166 KVAQDEFGNSKGYGFVHYETAEAANNAIKHV 196
Score = 40.8 bits (94), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 33/143 (23%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKA 165
AN +Y+ N+ +I+E + ++F+ +GE ++ K + FGF+ +A A
Sbjct: 226 ANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAA 285
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+++ +KG+ L + ++ +N + VKNLT +
Sbjct: 286 VDEMNDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVN--LYVKNLTDDI 343
Query: 200 TNELLELAFGVFGDIERAIVIVD 222
+E L F +G I A V+ D
Sbjct: 344 DDEKLREMFAPYGTITSAKVMRD 366
Score = 36.6 bits (83), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 64/150 (42%), Gaps = 21/150 (14%)
Query: 116 LYLGNIGGDITENDIIELFKPYGE------TQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+++ N+ I + + F +G Q+ F N K +GF+ + A+ A +
Sbjct: 138 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNS-KGYGFVHYETAEAANNAIKHV 196
Query: 170 DGHVLKGRSLKI-----------RFAPINAA---IKVKNLTSCVTNELLELAFGVFGDIE 215
+G +L + + + +F + A + +KNL ++ E F FG+I
Sbjct: 197 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEIT 256
Query: 216 RAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
A + D+ G S+ G V ++ +A A+
Sbjct: 257 SATLSRDQEGKSRGFGFVNYSTHDSAQAAV 286
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNAD--KA 165
N+ LY+G + +TE + ELF G+ + + ++ + G+ ++Y + D KA
Sbjct: 46 NSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKA 105
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
+L+ V+KG+ +I ++ + A++ +KNL + N+ L F FG+I
Sbjct: 106 LEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSC 165
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
V DE GNSK G V + AA A++
Sbjct: 166 KVAQDELGNSKGYGFVHYETAEAANNAIKHV 196
Score = 39.7 bits (91), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 66/149 (44%), Gaps = 19/149 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKHNADKAKAKLD 170
+++ N+ I + + F +G + ++++ +GF+ + A+ A ++
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVN 197
Query: 171 GHVLKGRSLKI-----------RFAPINAA---IKVKNLTSCVTNELLELAFGVFGDIER 216
G +L + + + +F + A I VKN+ VT+E F GDI
Sbjct: 198 GMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVTDEDFRELFEKHGDITS 257
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQAL 245
A + D++G S+ G V + R AAA A+
Sbjct: 258 ASIARDDQGKSRGFGFVNYIRHEAAAVAV 286
Score = 38.5 bits (88), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 56/142 (39%), Gaps = 33/142 (23%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKA 165
AN +Y+ NI D+T+ D ELF+ +G+ I K + FGF+ A A
Sbjct: 226 ANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEAAAVA 285
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
L+ KG+ L + ++ +N + +KNL V
Sbjct: 286 VDHLNDIEFKGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVN--LYIKNLNDDV 343
Query: 200 TNELLELAFGVFGDIERAIVIV 221
+E L F FG I A VI+
Sbjct: 344 DDEKLRDMFTPFGTITSAKVIL 365
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 84/176 (47%), Gaps = 20/176 (11%)
Query: 87 KIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN 146
++ A++ + PS Q ++ LY+G + +TE + ELF G+ + +
Sbjct: 31 EVTAVESASPSATPSANQ------PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVC 84
Query: 147 KEKM----FGFIRMDYKHNAD--KAKAKLDGHVLKGRSLKIRFAPINAAIK--------V 192
++ + G+ ++Y + AD +A L+ ++KG+ +I ++ + A++ +
Sbjct: 85 RDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFI 144
Query: 193 KNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
KNL + + N+ L F FG+I V DE GNSK G V + AA A++
Sbjct: 145 KNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHV 200
Score = 42.4 bits (98), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 33/143 (23%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKA 165
AN +Y+ NI ++T+ + ++F+ +GE ++ K + FGF+ +A A
Sbjct: 230 ANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAA 289
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+++ +KG+ L + ++ +N + VKNLT V
Sbjct: 290 VDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVN--LYVKNLTDDV 347
Query: 200 TNELLELAFGVFGDIERAIVIVD 222
+E L F FG I A V+ D
Sbjct: 348 DDEKLRELFSPFGTITSAKVMRD 370
Score = 38.5 bits (88), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 65/150 (43%), Gaps = 21/150 (14%)
Query: 116 LYLGNIGGDITENDIIELFKPYGE------TQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+++ N+ I + + F +G Q+ F N K +GF+ + A+ A +
Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNS-KGYGFVHYETAEAANNAIKHV 200
Query: 170 DGHVLKGRSLKI-----------RFAPINAA---IKVKNLTSCVTNELLELAFGVFGDIE 215
+G +L + + + +F + A + +KN+ VT+E F FG+I
Sbjct: 201 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEIT 260
Query: 216 RAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
A + D+ G S+ G V F+ +A A+
Sbjct: 261 SATLSRDQEGKSRGFGFVNFSTHDSAQAAV 290
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 78/175 (44%), Gaps = 33/175 (18%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKA 165
AN +Y+ NI + +E D+ +LF PYG +++ K+ K FGF+ + A KA
Sbjct: 230 ANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKA 289
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+L+ + G+ + + ++ +N + +KNL +
Sbjct: 290 VEELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVN--LFIKNLDDTI 347
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFF 254
+E LE F FG I A V+VDE G SK G V F+ A +A+ + FF
Sbjct: 348 DSEKLEEEFKPFGTITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMFF 402
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 14/138 (10%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNAD--KA 165
+ LY+G + + E + E+F P G+ + + ++ K G+ ++Y D KA
Sbjct: 50 STASLYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKA 109
Query: 166 KAKLDGHVLKGRSLKIRFAPINAA--------IKVKNLTSCVTNELLELAFGVFGDIERA 217
+L+ ++GR +I ++ + + I +KNL + N+ L F FG I
Sbjct: 110 IEELNYSPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKILSC 169
Query: 218 IVIVDERGNSKCEGIVEF 235
V D+ G SKC G V +
Sbjct: 170 KVATDDMGQSKCFGFVHY 187
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 14/148 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYK--HNADKA 165
N+ LY+G + + E + E+F P G+ + + ++ K G+ ++Y + +KA
Sbjct: 65 NSASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGEKA 124
Query: 166 KAKLDGHVLKGRSLKIRFAPINAA--------IKVKNLTSCVTNELLELAFGVFGDIERA 217
+L+ ++GR +I ++ + + I +KNL + N+ L F FG I
Sbjct: 125 IEELNYTPVEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSV 184
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V D+ G SKC G V + + AA A+
Sbjct: 185 KVATDDLGQSKCFGFVHYETEEAAQAAI 212
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 33/166 (19%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKA 165
AN +Y+ NI TE + ELF P+G+ +++ K+ K FGF+ + A KA
Sbjct: 245 ANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKA 304
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+L+ + G+ + + ++ +N + VKNL +
Sbjct: 305 VEELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVN--LFVKNLDEQI 362
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+E LE F FG I + V+VD+ G SK G V F+ A +A+
Sbjct: 363 DSEKLEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAI 408
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 14/138 (10%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNAD--KA 165
N+ LY+G + + E + E+F P G+ + + ++ K G+ ++Y D KA
Sbjct: 50 NSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKA 109
Query: 166 KAKLDGHVLKGRSLKIRFAPINAA--------IKVKNLTSCVTNELLELAFGVFGDIERA 217
+L+ + ++GR +I ++ + + I +KNL + N+ L F FG I
Sbjct: 110 IEELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSC 169
Query: 218 IVIVDERGNSKCEGIVEF 235
V DE G SKC G V +
Sbjct: 170 KVATDEFGQSKCFGFVHY 187
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 33/166 (19%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKA 165
AN +Y+ NI + +E +LF P+G+ +++ K+ K FGF+ + +A KA
Sbjct: 230 ANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKA 289
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+L+ + G+ + + ++ +N + VKNL +
Sbjct: 290 VEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVN--LFVKNLDDTI 347
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+E LE F FG I A V+VDE G SK G V F A +A+
Sbjct: 348 DSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAI 393
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 75/145 (51%), Gaps = 15/145 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + ++ +KNL + N+ L F FGDI V+
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALR 246
DE G S+ G V F + AA +A++
Sbjct: 133 DEYG-SRGYGFVHFETQEAANRAIQ 156
Score = 38.1 bits (87), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 33/169 (19%)
Query: 106 KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKH 160
K ++F N +Y+ N G D+ + + E+F +G T + + + + FGF+
Sbjct: 186 KVMEFTN---VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHE 242
Query: 161 NADKAKAKLDGHVLKGR---------------SLKIRFAPIN---------AAIKVKNLT 196
A KA +++G + GR LK +F I + VKNL
Sbjct: 243 EAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLD 302
Query: 197 SCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ ++ L F +G I V+ E G+SK G V F+ A +A+
Sbjct: 303 DGIDDDRLRKEFSPYGTITSTKVMT-EGGHSKGFGFVCFSSPEEATKAV 350
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 19/151 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQEL-----FINKEKMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + E F +G + + K +GF++ + + A A KL+
Sbjct: 148 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLN 207
Query: 171 GHVLKGRSLKI-RFA-------------PINAAIKVKNLTSCVTNELLELAFGVFGDIER 216
G +L + + + F P + VKNL +T++ L+ FG +GDI
Sbjct: 208 GMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISS 267
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQALRR 247
A+V+ D+ GNS+ G V F AAA A+ +
Sbjct: 268 AVVMKDQSGNSRSFGFVNFVSPEAAAVAVEK 298
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 67/149 (44%), Gaps = 13/149 (8%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKHNADKAKA 167
N LY+G++ + E+ +++LF L + ++ + ++ +A +A
Sbjct: 58 NSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAME 117
Query: 168 KLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIV 219
L+ ++ R ++I + + + + +KNL + + N+ L F FG I V
Sbjct: 118 SLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKV 177
Query: 220 IVDERGNSKCEGIVEFARKPAAAQALRRC 248
+D G SK G V+F ++ A A+ +
Sbjct: 178 AMDVVGRSKGYGFVQFEKEETAQAAIDKL 206
>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1
PE=3 SV=2
Length = 631
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 14/134 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G + + E + E+F P G+ + + ++ K G+ +++ +AD ++A +L
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++ GR +I ++ + +++ +KNL + N+ L F FG I V
Sbjct: 120 NYSLVDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVAT 179
Query: 222 DERGNSKCEGIVEF 235
DE G SKC G V +
Sbjct: 180 DELGQSKCFGFVHY 193
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 33/166 (19%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKA 165
AN +Y+ N+ ++ E+FKP+G + + K + FGF+ + +A A
Sbjct: 236 ANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNA 295
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+++ + G+ L + ++ +N + VKNL +
Sbjct: 296 VKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVN--LFVKNLDDSI 353
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+E LE F FG I A V+VD+ G SK G V F+ A +A+
Sbjct: 354 DSEKLEEEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAI 399
Score = 35.4 bits (80), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 23/152 (15%)
Query: 116 LYLGNIGGDITENDIIELFKPYGE-------TQELFINKEKMFGFIRMDYKHNADKAKAK 168
+++ N+ I + + F +G T EL + K FGF+ + A+ A
Sbjct: 148 IFIKNLHPAIDNKALHDTFSAFGRILSCKVATDEL--GQSKCFGFVHYETAEAAEAAIEN 205
Query: 169 LDGHVLKGRSLKI-----------RFAPINAA---IKVKNLTSCVTNELLELAFGVFGDI 214
++G +L R + + +F + A + VKNL V N E F FG +
Sbjct: 206 VNGMLLNDREVFVGKHVSKRDRESKFEEMKANFTNVYVKNLAPEVDNAKFEEIFKPFGPV 265
Query: 215 ERAIVIVDERGNSKCEGIVEFARKPAAAQALR 246
+ D+ G S+ G V F +A A++
Sbjct: 266 TSVHLETDQEGKSRGFGFVNFENHESALNAVK 297
>sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PAB1 PE=3 SV=1
Length = 629
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 72/151 (47%), Gaps = 14/151 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA 167
+N LY+G + +TE + E+F P G + + ++ + G+ +++ + AD +A
Sbjct: 44 DNASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRA 103
Query: 168 --KLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
+L+ +K R +I ++ + A++ +KNL + N+ L F FG I
Sbjct: 104 LEELNYSPIKERPCRIMWSQRDPALRKTGAGNIYIKNLDPAIDNKALHDTFSAFGQILSC 163
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALRRC 248
+ DE GNS+ G V + +A A++
Sbjct: 164 KIATDEFGNSRGFGFVHYESAESAESAIQHV 194
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 35/164 (21%)
Query: 114 CRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAK 168
+++ N+G +ITE + EL +GET + ++ K FGF+ DYK + D A
Sbjct: 227 TNVFIKNLGTEITEAEFEELVNKFGETSSVHLSTNDEGKPTGFGFV--DYKEH-DVAVKA 283
Query: 169 LDG---------HVLKGRSLK--------------IRFAPIN----AAIKVKNLTSCVTN 201
+DG + GR+ K R +N + +KNL + +
Sbjct: 284 IDGLSETEFKGNKLFAGRAKKKYERADELRKQYEASRLEKLNKYQGVNLYIKNLDDTIDD 343
Query: 202 ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ L F G I A V+VDE G SK G V ++ A +A+
Sbjct: 344 DKLRAEFAPHGTITSAKVMVDEAGKSKGFGFVCYSSPEEATKAV 387
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 75/144 (52%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE G SK G V F + AA +A+
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAI 155
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + E+F YG + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G + G+S+ + R+ +N + VKNL + +E L
Sbjct: 253 GKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFLPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
Score = 42.0 bits (97), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + + A++A K++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + +E L+ FG +G
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D+ G SK G V F R A +A+
Sbjct: 221 KVMTDDNGKSKGFGFVSFERHEDAQKAV 248
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 83/185 (44%), Gaps = 25/185 (13%)
Query: 78 GGGDRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPY 137
G D ++ A++ P P ++ LY+G + +TE + ELF
Sbjct: 17 GTPDNAPAPEVTAVEAPATTSQP-----------HSASLYVGELDPSVTEAMLYELFSSI 65
Query: 138 GETQELFINKEKM----FGFIRMDYKHNA--DKAKAKLDGHVLKGRSLKIRFAPINAAIK 191
G+ + + ++ + G+ ++Y A ++A +L+ ++KG+ +I ++ + A++
Sbjct: 66 GQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPALR 125
Query: 192 --------VKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQ 243
+KNL S + N+ L F FG+I V DE G SK G V + AA
Sbjct: 126 KTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANN 185
Query: 244 ALRRC 248
A++
Sbjct: 186 AIKHV 190
Score = 37.4 bits (85), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 33/143 (23%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKA 165
AN +Y+ NI ++ + + +LF+ +GE ++ K + FGF+ +A A
Sbjct: 220 ANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAA 279
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+++ ++ + L + ++ +N + VKNLT V
Sbjct: 280 VEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVN--LYVKNLTDDV 337
Query: 200 TNELLELAFGVFGDIERAIVIVD 222
++ L FG +G I A V+ D
Sbjct: 338 DDDKLRELFGPYGTITSAKVMRD 360
Score = 35.0 bits (79), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/149 (20%), Positives = 62/149 (41%), Gaps = 19/149 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLD 170
+++ N+ I + + F +G + ++ K +GF+ + A+ A ++
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVN 191
Query: 171 GHVLKGRSLKI-----------RFAPINAA---IKVKNLTSCVTNELLELAFGVFGDIER 216
G +L + + + +F + A I +KN+ V +E F FG+I
Sbjct: 192 GMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITS 251
Query: 217 AIVIVDERGNSKCEGIVEFARKPAAAQAL 245
A + D G S+ G V F+ +A A+
Sbjct: 252 ATLSRDSEGKSRGFGFVNFSTHESAQAAV 280
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 75/145 (51%), Gaps = 15/145 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + ++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALR 246
DE G S+ G V F + AA +A++
Sbjct: 133 DEHG-SRGYGFVHFETQEAANRAIQ 156
Score = 40.4 bits (93), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 33/169 (19%)
Query: 106 KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKH 160
K ++F N +Y+ N G D+ + + E+F +G T + + + + FGF+
Sbjct: 186 KVMEFTN---VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHE 242
Query: 161 NADKAKAKLDGHVLKGR---------------SLKIRFAPIN---------AAIKVKNLT 196
A KA ++++G + GR LK +F I + VKNL
Sbjct: 243 EAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLD 302
Query: 197 SCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ ++ L F +G I A V+ E G+SK G V F+ A +A+
Sbjct: 303 DGIDDDRLRKEFSPYGTITSAKVMT-EGGHSKGFGFVCFSSPEEATKAV 350
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 76/146 (52%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + + A++A K++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + +E L+ FG FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAV 248
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + ELF +G + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 76/146 (52%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + + A++A K++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + +E L+ FG FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAV 248
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + ELF +G + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 14/148 (9%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYK--HNADKA 165
NN LY+G + +ITE + ++F P G + + ++ + G+ ++Y KA
Sbjct: 48 NNASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKA 107
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
+L+ + GR +I ++ + AI+ +KNL + N+ L F FG++
Sbjct: 108 IQELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSC 167
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V +DE GNS+ G V F + A A+
Sbjct: 168 KVALDENGNSRGFGFVHFKEESDAKDAI 195
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 33/166 (19%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKA 165
AN +Y+ NI + T+ + +LF YGE + K+ K FGF+ + A KA
Sbjct: 228 ANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKA 287
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+L+G K ++L + +F +N + +KNL +
Sbjct: 288 VEELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVN--LFIKNLDDSI 345
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+E L+ F +G I A V+ D+ GNSK G V F+ A +A+
Sbjct: 346 DDEKLKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAM 391
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 76/146 (52%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + + A++A K++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + +E L+ FG FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAV 248
Score = 41.2 bits (95), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + +LF +G + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 76/146 (52%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K +GF+ + + A++A K++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN + +E L+ FG FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAV 248
Score = 41.2 bits (95), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + +LF +G + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 75/144 (52%), Gaps = 15/144 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE G SK G V F + AA +A+
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAI 155
Score = 39.7 bits (91), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + E F YG + + K + FGF+ + +A KA ++
Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+++ + R+ +N + VKNL + +E L
Sbjct: 253 GKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKEFTPFGSITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
>sp|Q6IQ97|RBM41_DANRE RNA-binding protein 4.1 OS=Danio rerio GN=rbm4.1 PE=1 SV=1
Length = 419
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 6/112 (5%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVL 174
++++GN+ + T +I LF YG+ E I K FGF+ MD K AD+A L ++L
Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIVKN--FGFVHMDSKSEADEAIQNLHHYML 60
Query: 175 KGRSLKIRFA----PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD 222
G ++ + + + + V N++S TN+ L F +G + ++ D
Sbjct: 61 NGMAMNVEMSKGKPKTSTKLHVGNISSSCTNQELRAKFEEYGPVVECDIVKD 112
Score = 37.0 bits (84), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDG 171
+ +L++GNI T ++ F+ YG E I K+ + F+ M+ +A +A + LD
Sbjct: 76 TSTKLHVGNISSSCTNQELRAKFEEYGPVVECDIVKD--YAFVHMERVEDAMEAISGLDN 133
Query: 172 HVLKGRSLKIRFA 184
+G+ + ++ +
Sbjct: 134 TAFQGKLMSVKLS 146
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 30/159 (18%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G ++ + + ELF +G+T + + K K FGF+ + +A+KA +++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 171 GHVLKGR---------------SLKIRFAPIN---------AAIKVKNLTSCVTNELLEL 206
G + G+ LK +F + + +KNL + +E L
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 207 AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
F FG I A V++ E G SK G V F+ A +A+
Sbjct: 313 EFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAV 350
Score = 39.7 bits (91), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + F +G + N K + F+ + + ADKA K++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L R S K R A + A K +KN V +E L+ F FG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ D G SK G V + + A +A+
Sbjct: 221 KVMRDPNGKSKGFGFVSYEKHEDANKAV 248
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 73/146 (50%), Gaps = 15/146 (10%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKL 169
LY+G++ D+TE + E F P G + I ++ + + ++ + +A+ A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ VKNL + N+ L FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F AA +A+++
Sbjct: 133 DENG-SKGYGFVHFETHEAAERAIKK 157
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 34/161 (21%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAKAKLD 170
+Y+ N G D+ + + +LF +G + + K K FGF+ + +A KA +++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 171 GHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCVTNELL 204
G L G+ + + R+ +N + VKNL + +E L
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVN--LYVKNLDDGIDDERL 310
Query: 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
AF FG I A V++ E G SK G V F+ A +A+
Sbjct: 311 RKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAV 350
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 18/148 (12%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKAKLDG 171
+++ N+ I + + +G + N K +GF+ + A++A K++G
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNG 160
Query: 172 HVLKGR--------SLKIRFAPINAAIK------VKNLTSCVTNELLELAFGVFGDIERA 217
+L GR S K R A + A K +KN + +E L+ FG FG
Sbjct: 161 MLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
V+ DE G SK G V F R A +A+
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAV 248
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 58.9 bits (141), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 33/166 (19%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKA 165
AN +Y NI D +E + +LF+ YG+ +++ K+ K FGF+ + +A KA
Sbjct: 229 ANFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKA 288
Query: 166 KAKLDGHVLKGRSLKI--------------------------RFAPINAAIKVKNLTSCV 199
+L+ + G+ + + ++ +N + +KNL +
Sbjct: 289 VDELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVN--LFIKNLDDTI 346
Query: 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+E LE F FG I A V+VDE G SK G V F+ A +A+
Sbjct: 347 DSEKLEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATKAI 392
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 64/137 (46%), Gaps = 14/137 (10%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAK 166
+ LY+G + + E + E+F P G+ + + ++ + + ++ + +KA
Sbjct: 50 SASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAI 109
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
L+ +++GR +I ++ + +++ +KNL + N+ L F FG I
Sbjct: 110 EDLNYSLIEGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFGKILSCK 169
Query: 219 VIVDERGNSKCEGIVEF 235
V D+ G SKC G V +
Sbjct: 170 VATDDMGISKCFGFVHY 186
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 212,387,457
Number of Sequences: 539616
Number of extensions: 10682187
Number of successful extensions: 106220
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 1654
Number of HSP's that attempted gapping in prelim test: 58077
Number of HSP's gapped (non-prelim): 32576
length of query: 503
length of database: 191,569,459
effective HSP length: 122
effective length of query: 381
effective length of database: 125,736,307
effective search space: 47905532967
effective search space used: 47905532967
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)