Query psy93
Match_columns 503
No_of_seqs 533 out of 3096
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 23:53:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy93.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/93hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 1.9E-28 4.2E-33 250.6 24.7 158 111-270 105-275 (346)
2 KOG0117|consensus 99.9 1.8E-26 3.8E-31 231.2 16.6 223 81-307 44-289 (506)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 9.8E-26 2.1E-30 232.7 18.1 154 113-268 3-169 (352)
4 KOG0144|consensus 99.9 4.2E-26 9E-31 227.5 13.3 164 111-275 32-211 (510)
5 TIGR01628 PABP-1234 polyadenyl 99.9 9.7E-26 2.1E-30 247.0 16.9 187 115-305 2-206 (562)
6 TIGR01645 half-pint poly-U bin 99.9 7.5E-25 1.6E-29 235.7 18.4 155 111-269 105-283 (612)
7 TIGR01648 hnRNP-R-Q heterogene 99.9 1.3E-24 2.9E-29 233.4 19.5 226 80-307 18-265 (578)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 4.9E-24 1.1E-28 220.1 20.2 156 112-271 88-350 (352)
9 KOG0148|consensus 99.9 1.3E-23 2.8E-28 198.8 15.3 151 113-272 62-240 (321)
10 TIGR01628 PABP-1234 polyadenyl 99.9 1.5E-23 3.3E-28 229.8 17.2 193 112-305 87-313 (562)
11 TIGR01622 SF-CC1 splicing fact 99.9 3.4E-23 7.4E-28 221.3 19.4 152 112-268 88-264 (457)
12 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 6.4E-23 1.4E-27 220.3 19.0 152 113-269 2-173 (481)
13 KOG0131|consensus 99.9 1.5E-23 3.3E-28 188.2 10.8 157 112-272 8-179 (203)
14 KOG0145|consensus 99.9 2.4E-23 5.1E-28 195.8 12.4 157 112-270 40-209 (360)
15 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.5E-22 3.2E-27 219.3 18.5 155 111-270 173-375 (509)
16 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 6.1E-22 1.3E-26 212.8 18.9 142 111-254 273-461 (481)
17 KOG0127|consensus 99.9 1.5E-21 3.3E-26 199.7 13.8 154 114-271 6-197 (678)
18 TIGR01648 hnRNP-R-Q heterogene 99.9 6.9E-21 1.5E-25 204.8 17.1 151 111-272 136-309 (578)
19 KOG0117|consensus 99.9 4.4E-21 9.5E-26 192.6 14.3 153 112-275 163-336 (506)
20 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.2E-20 2.7E-25 204.3 18.2 155 112-270 294-502 (509)
21 KOG0109|consensus 99.9 2E-21 4.4E-26 185.6 10.1 141 115-268 4-148 (346)
22 KOG0123|consensus 99.9 1.1E-20 2.4E-25 194.6 16.3 183 114-305 2-195 (369)
23 KOG0115|consensus 99.8 1.6E-21 3.5E-26 183.8 8.3 204 160-365 5-236 (275)
24 KOG0127|consensus 99.8 3.1E-20 6.7E-25 190.2 15.5 162 113-276 117-384 (678)
25 KOG0145|consensus 99.8 6.1E-20 1.3E-24 172.8 13.7 154 112-269 126-357 (360)
26 TIGR01622 SF-CC1 splicing fact 99.8 2.1E-19 4.5E-24 192.2 17.7 151 113-270 186-448 (457)
27 KOG0110|consensus 99.8 1.8E-19 3.9E-24 190.2 11.7 155 113-271 515-694 (725)
28 KOG0124|consensus 99.8 1.6E-19 3.5E-24 176.9 9.8 138 112-249 112-273 (544)
29 KOG0105|consensus 99.8 1E-18 2.2E-23 157.2 12.7 137 112-254 5-176 (241)
30 KOG0148|consensus 99.8 1.7E-18 3.6E-23 164.3 10.3 160 113-305 6-192 (321)
31 KOG0146|consensus 99.7 9.3E-18 2E-22 158.8 12.5 170 94-270 3-365 (371)
32 KOG0123|consensus 99.7 5.5E-17 1.2E-21 167.3 13.9 149 116-269 79-245 (369)
33 KOG0144|consensus 99.7 1.5E-16 3.3E-21 159.4 10.1 74 111-184 122-203 (510)
34 KOG4205|consensus 99.6 3.7E-16 8E-21 156.2 9.7 156 112-273 5-179 (311)
35 KOG0110|consensus 99.6 8.4E-16 1.8E-20 162.7 12.5 190 112-305 384-641 (725)
36 TIGR01645 half-pint poly-U bin 99.6 7.1E-15 1.5E-19 158.9 18.4 73 112-184 203-281 (612)
37 KOG4661|consensus 99.6 4.4E-14 9.5E-19 145.5 20.3 77 110-186 402-484 (940)
38 KOG0147|consensus 99.6 2E-15 4.3E-20 156.1 7.5 151 112-267 178-355 (549)
39 PLN03134 glycine-rich RNA-bind 99.6 1.4E-14 3.1E-19 130.6 11.6 76 111-186 32-113 (144)
40 KOG4206|consensus 99.6 8.2E-14 1.8E-18 130.3 14.7 148 113-267 9-219 (221)
41 KOG4212|consensus 99.5 2.5E-13 5.4E-18 136.5 16.1 149 114-266 45-290 (608)
42 KOG0147|consensus 99.5 6.7E-14 1.5E-18 144.9 11.9 148 115-270 280-528 (549)
43 KOG1548|consensus 99.5 4.4E-13 9.6E-18 131.7 16.2 154 110-270 131-352 (382)
44 KOG0106|consensus 99.5 2.6E-14 5.6E-19 134.9 6.4 138 114-264 2-165 (216)
45 KOG0107|consensus 99.5 4.5E-14 9.8E-19 126.7 7.6 75 112-186 9-84 (195)
46 KOG1457|consensus 99.4 7.8E-13 1.7E-17 122.8 12.3 138 113-254 34-273 (284)
47 PF00076 RRM_1: RNA recognitio 99.4 1.7E-13 3.7E-18 107.0 6.5 65 116-180 1-70 (70)
48 KOG0121|consensus 99.4 1.3E-13 2.8E-18 117.6 6.1 77 109-185 32-114 (153)
49 PLN03134 glycine-rich RNA-bind 99.4 2E-12 4.4E-17 116.6 10.1 82 185-270 32-114 (144)
50 TIGR01659 sex-lethal sex-letha 99.4 9.2E-13 2E-17 135.3 8.4 116 186-306 106-222 (346)
51 PLN03120 nucleic acid binding 99.4 2.8E-12 6.1E-17 124.3 9.6 72 113-185 4-78 (260)
52 KOG1456|consensus 99.3 9.3E-11 2E-15 116.2 20.1 154 112-266 286-485 (494)
53 KOG4211|consensus 99.3 1.5E-11 3.3E-16 126.0 14.8 134 114-249 11-166 (510)
54 KOG0125|consensus 99.3 2.9E-12 6.3E-17 125.1 8.9 75 112-186 95-173 (376)
55 KOG4661|consensus 99.3 1.1E-10 2.4E-15 120.8 20.0 79 187-269 405-484 (940)
56 KOG1190|consensus 99.3 1.7E-11 3.7E-16 122.8 13.4 149 113-267 297-488 (492)
57 KOG0122|consensus 99.3 4.2E-12 9.2E-17 119.6 8.3 76 112-187 188-269 (270)
58 KOG0114|consensus 99.3 8.5E-12 1.8E-16 102.7 8.9 98 113-212 18-118 (124)
59 PF14259 RRM_6: RNA recognitio 99.3 4.6E-12 1E-16 99.5 7.2 65 116-180 1-70 (70)
60 KOG1190|consensus 99.3 9.5E-11 2.1E-15 117.5 15.3 150 114-271 151-374 (492)
61 COG0724 RNA-binding proteins ( 99.3 4.1E-11 8.9E-16 116.9 12.2 110 113-222 115-260 (306)
62 KOG0124|consensus 99.3 6.2E-11 1.3E-15 117.0 12.9 72 113-184 210-287 (544)
63 smart00362 RRM_2 RNA recogniti 99.3 2.3E-11 5E-16 94.1 8.1 67 115-181 1-71 (72)
64 KOG0120|consensus 99.3 1.9E-11 4.2E-16 128.2 9.9 156 111-270 287-492 (500)
65 PLN03213 repressor of silencin 99.2 1.6E-11 3.6E-16 125.1 8.6 75 112-186 9-87 (759)
66 PF00076 RRM_1: RNA recognitio 99.2 4.9E-11 1.1E-15 93.0 9.1 64 190-254 1-64 (70)
67 PLN03121 nucleic acid binding 99.2 3.3E-11 7.1E-16 115.1 9.5 73 112-185 4-79 (243)
68 KOG1456|consensus 99.2 2.9E-10 6.3E-15 112.8 16.0 152 113-270 31-199 (494)
69 KOG4212|consensus 99.2 3.1E-10 6.7E-15 114.5 15.7 71 188-266 537-607 (608)
70 KOG0132|consensus 99.2 8.8E-11 1.9E-15 125.8 12.3 101 109-209 417-528 (894)
71 KOG4207|consensus 99.2 2.1E-11 4.5E-16 112.2 5.5 74 112-185 12-91 (256)
72 KOG0130|consensus 99.2 5.9E-11 1.3E-15 102.3 7.2 74 111-184 70-149 (170)
73 PF13893 RRM_5: RNA recognitio 99.2 1.2E-10 2.5E-15 87.6 7.6 55 130-184 1-56 (56)
74 KOG0111|consensus 99.2 3.4E-11 7.4E-16 111.6 5.3 76 112-187 9-90 (298)
75 KOG0149|consensus 99.1 5.4E-11 1.2E-15 111.9 6.2 73 112-185 11-89 (247)
76 KOG0113|consensus 99.1 2.2E-10 4.7E-15 110.9 10.3 74 111-184 99-178 (335)
77 cd00590 RRM RRM (RNA recogniti 99.1 2.2E-10 4.8E-15 89.0 8.4 69 115-183 1-74 (74)
78 KOG0122|consensus 99.1 1.7E-10 3.6E-15 109.0 8.0 81 186-270 188-269 (270)
79 KOG0129|consensus 99.1 1.9E-09 4.2E-14 111.6 14.3 160 108-268 254-452 (520)
80 smart00360 RRM RNA recognition 99.1 5.1E-10 1.1E-14 86.1 7.3 65 118-182 1-71 (71)
81 PF14259 RRM_6: RNA recognitio 99.1 1.2E-09 2.5E-14 85.7 9.3 64 190-254 1-64 (70)
82 PLN03120 nucleic acid binding 99.0 7.5E-10 1.6E-14 107.5 9.4 79 187-272 4-82 (260)
83 KOG0126|consensus 99.0 3.8E-11 8.2E-16 108.5 0.3 75 108-182 30-110 (219)
84 KOG0121|consensus 99.0 6.6E-10 1.4E-14 95.1 6.4 80 187-270 36-116 (153)
85 KOG0109|consensus 99.0 3.4E-10 7.4E-15 109.2 5.1 97 88-186 53-149 (346)
86 KOG0149|consensus 99.0 5.6E-10 1.2E-14 105.1 6.1 62 188-249 13-75 (247)
87 KOG0120|consensus 99.0 9.5E-10 2.1E-14 115.6 7.9 153 112-269 174-368 (500)
88 KOG0125|consensus 99.0 9.8E-10 2.1E-14 107.7 7.2 97 169-270 72-174 (376)
89 KOG0415|consensus 98.9 4.2E-09 9.1E-14 104.0 10.6 87 180-270 232-319 (479)
90 KOG4454|consensus 98.9 1.9E-10 4.1E-15 106.9 0.8 133 113-248 9-145 (267)
91 KOG0108|consensus 98.9 2.3E-09 5E-14 112.1 7.7 73 114-186 19-97 (435)
92 PLN03121 nucleic acid binding 98.9 4.9E-09 1.1E-13 100.3 9.2 77 187-270 5-81 (243)
93 smart00362 RRM_2 RNA recogniti 98.9 7.5E-09 1.6E-13 79.8 8.6 71 189-264 1-71 (72)
94 PF08075 NOPS: NOPS (NUC059) d 98.9 6.9E-10 1.5E-14 80.0 1.8 52 261-313 1-52 (52)
95 KOG0107|consensus 98.9 3E-09 6.6E-14 95.9 6.3 77 186-270 9-85 (195)
96 KOG0131|consensus 98.9 1.9E-09 4.1E-14 97.7 4.8 116 185-304 7-123 (203)
97 KOG0153|consensus 98.9 9.1E-09 2E-13 101.7 10.0 75 112-186 227-302 (377)
98 KOG0126|consensus 98.9 3.1E-10 6.7E-15 102.7 -0.3 99 164-266 8-111 (219)
99 KOG4207|consensus 98.8 3.2E-09 6.9E-14 98.0 5.3 80 187-270 13-93 (256)
100 KOG0113|consensus 98.8 1E-08 2.2E-13 99.6 8.3 79 185-267 99-178 (335)
101 KOG0146|consensus 98.8 5.6E-09 1.2E-13 99.7 6.4 96 176-272 2-103 (371)
102 KOG0114|consensus 98.8 1.4E-08 3E-13 84.0 7.3 79 187-271 18-96 (124)
103 PLN03213 repressor of silencin 98.8 1.2E-08 2.6E-13 104.6 8.1 76 187-269 10-87 (759)
104 cd00590 RRM RRM (RNA recogniti 98.8 4E-08 8.7E-13 76.1 9.4 73 189-265 1-73 (74)
105 smart00360 RRM RNA recognition 98.8 3.4E-08 7.3E-13 75.7 8.5 69 192-264 1-70 (71)
106 KOG0130|consensus 98.8 8.4E-09 1.8E-13 89.1 5.2 77 187-267 72-149 (170)
107 KOG0111|consensus 98.7 8.7E-09 1.9E-13 95.8 4.3 84 184-271 7-91 (298)
108 KOG0415|consensus 98.7 1.6E-08 3.5E-13 100.0 6.0 79 111-189 237-321 (479)
109 COG0724 RNA-binding proteins ( 98.7 5.4E-08 1.2E-12 94.8 9.0 78 187-268 115-193 (306)
110 KOG0533|consensus 98.7 2.2E-07 4.7E-12 90.0 12.9 76 111-186 81-161 (243)
111 smart00361 RRM_1 RNA recogniti 98.7 4.9E-08 1.1E-12 76.9 6.5 55 127-181 2-69 (70)
112 KOG0112|consensus 98.7 1.3E-08 2.9E-13 111.0 3.8 153 108-267 367-528 (975)
113 KOG1365|consensus 98.6 5.5E-08 1.2E-12 97.1 6.9 150 114-268 162-360 (508)
114 KOG0108|consensus 98.6 7.7E-08 1.7E-12 100.8 7.4 81 188-272 19-100 (435)
115 KOG0128|consensus 98.6 6E-09 1.3E-13 113.3 -1.2 127 112-249 666-798 (881)
116 PF13893 RRM_5: RNA recognitio 98.5 2.3E-07 5E-12 69.5 6.9 56 204-267 1-56 (56)
117 smart00361 RRM_1 RNA recogniti 98.5 3.4E-07 7.4E-12 72.1 7.6 60 201-264 2-69 (70)
118 KOG4211|consensus 98.5 7.8E-07 1.7E-11 91.9 11.0 134 112-247 102-340 (510)
119 KOG0151|consensus 98.5 2.2E-07 4.7E-12 99.2 7.0 74 112-185 173-255 (877)
120 KOG0226|consensus 98.5 7.8E-08 1.7E-12 91.5 3.3 152 115-270 98-270 (290)
121 KOG0105|consensus 98.4 2.5E-07 5.4E-12 84.2 5.2 78 186-269 5-82 (241)
122 KOG4210|consensus 98.4 1.6E-07 3.5E-12 93.9 4.2 154 112-270 87-264 (285)
123 KOG4208|consensus 98.4 7E-07 1.5E-11 82.9 7.1 75 113-187 49-130 (214)
124 KOG4205|consensus 98.3 3.6E-07 7.9E-12 91.9 4.1 115 186-305 5-125 (311)
125 KOG4660|consensus 98.3 4.7E-07 1E-11 94.9 4.2 131 108-244 70-229 (549)
126 KOG4206|consensus 98.3 2.1E-06 4.6E-11 80.9 7.3 81 186-272 8-92 (221)
127 KOG2193|consensus 98.3 2.6E-07 5.5E-12 93.4 1.2 134 114-249 2-140 (584)
128 KOG0116|consensus 98.2 1.4E-06 3E-11 91.0 6.0 71 113-184 288-364 (419)
129 PF11608 Limkain-b1: Limkain b 98.2 5.2E-06 1.1E-10 66.5 7.5 70 114-187 3-77 (90)
130 KOG2891|consensus 98.2 1E-05 2.2E-10 78.1 9.6 52 198-249 172-243 (445)
131 KOG0132|consensus 98.2 4.4E-06 9.4E-11 90.5 7.8 75 187-270 421-495 (894)
132 KOG0153|consensus 98.1 6.5E-06 1.4E-10 81.8 6.9 75 187-269 228-302 (377)
133 KOG4307|consensus 98.1 5.4E-06 1.2E-10 88.6 5.9 150 112-267 310-511 (944)
134 KOG4676|consensus 98.0 2.5E-06 5.5E-11 85.7 2.9 130 115-248 9-209 (479)
135 KOG4208|consensus 98.0 1.1E-05 2.4E-10 75.0 6.8 80 187-270 49-130 (214)
136 KOG2253|consensus 98.0 5.1E-06 1.1E-10 88.8 5.1 69 112-183 39-107 (668)
137 KOG4209|consensus 98.0 8E-06 1.7E-10 79.3 5.5 77 108-185 96-178 (231)
138 KOG0533|consensus 98.0 1.7E-05 3.7E-10 77.0 7.4 81 186-270 82-162 (243)
139 PF08777 RRM_3: RNA binding mo 97.9 2.2E-05 4.8E-10 66.9 6.2 59 114-172 2-60 (105)
140 PF04059 RRM_2: RNA recognitio 97.9 6E-05 1.3E-09 63.0 7.9 72 114-185 2-85 (97)
141 KOG1548|consensus 97.8 5.8E-05 1.3E-09 75.2 7.8 80 187-270 134-221 (382)
142 COG5175 MOT2 Transcriptional r 97.8 3.6E-05 7.8E-10 76.1 5.9 74 113-186 114-202 (480)
143 KOG4307|consensus 97.8 0.00044 9.6E-09 74.4 14.1 70 114-183 868-943 (944)
144 PF04059 RRM_2: RNA recognitio 97.8 0.00015 3.2E-09 60.7 8.5 82 188-269 2-86 (97)
145 KOG0106|consensus 97.7 2.1E-05 4.5E-10 74.8 3.4 69 112-182 98-166 (216)
146 KOG1995|consensus 97.7 0.00012 2.6E-09 73.5 8.6 79 110-188 63-155 (351)
147 KOG1457|consensus 97.7 0.00018 3.9E-09 67.7 8.9 83 187-270 34-118 (284)
148 KOG0226|consensus 97.6 4.9E-05 1.1E-09 72.8 4.4 73 112-184 189-267 (290)
149 KOG4454|consensus 97.6 3.4E-05 7.3E-10 72.4 2.9 77 186-267 8-84 (267)
150 KOG1365|consensus 97.6 0.0005 1.1E-08 69.4 11.1 134 113-247 60-225 (508)
151 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00017 3.6E-09 53.6 4.6 52 114-166 2-53 (53)
152 KOG0116|consensus 97.5 0.00014 3E-09 76.1 5.7 74 188-266 289-363 (419)
153 PTZ00266 NIMA-related protein 97.5 0.002 4.4E-08 74.5 15.3 22 429-450 560-581 (1021)
154 KOG4209|consensus 97.3 0.00023 5.1E-09 69.1 5.0 80 185-269 99-179 (231)
155 PTZ00266 NIMA-related protein 97.3 0.0028 6.2E-08 73.3 14.4 15 428-442 566-580 (1021)
156 PF08777 RRM_3: RNA binding mo 97.2 0.00049 1.1E-08 58.6 5.2 57 188-249 2-58 (105)
157 KOG0151|consensus 97.2 0.00053 1.2E-08 74.0 6.1 68 186-254 173-244 (877)
158 KOG1855|consensus 97.1 0.00044 9.5E-09 70.8 4.5 62 111-172 229-309 (484)
159 KOG3152|consensus 97.1 0.00033 7.1E-09 67.3 3.3 67 112-178 73-157 (278)
160 PF05172 Nup35_RRM: Nup53/35/4 97.0 0.0017 3.7E-08 54.7 6.4 71 113-185 6-90 (100)
161 KOG4660|consensus 97.0 0.0006 1.3E-08 72.0 4.1 61 185-249 73-133 (549)
162 KOG1029|consensus 96.9 0.026 5.6E-07 62.0 15.3 18 14-31 76-93 (1118)
163 KOG0128|consensus 96.8 0.00018 3.9E-09 79.2 -1.8 139 114-254 572-734 (881)
164 KOG2314|consensus 96.8 0.0027 6E-08 67.1 6.8 81 188-271 59-145 (698)
165 KOG0112|consensus 96.7 0.0021 4.6E-08 71.3 5.8 78 109-186 451-530 (975)
166 PF11608 Limkain-b1: Limkain b 96.7 0.0057 1.2E-07 49.3 6.4 70 188-270 3-77 (90)
167 KOG1995|consensus 96.6 0.0016 3.6E-08 65.5 3.7 79 188-270 67-154 (351)
168 KOG2314|consensus 96.6 0.0051 1.1E-07 65.1 6.9 72 112-183 57-140 (698)
169 KOG2416|consensus 96.5 0.0019 4.2E-08 68.6 3.5 74 112-185 443-520 (718)
170 KOG4210|consensus 96.5 0.0021 4.5E-08 64.6 3.3 72 114-186 185-263 (285)
171 KOG1029|consensus 96.4 0.038 8.1E-07 60.8 12.2 11 238-248 248-258 (1118)
172 PF14605 Nup35_RRM_2: Nup53/35 96.2 0.0064 1.4E-07 45.0 4.0 52 188-245 2-53 (53)
173 KOG0163|consensus 96.0 0.069 1.5E-06 58.7 11.7 36 344-379 960-995 (1259)
174 KOG1855|consensus 95.9 0.016 3.5E-07 59.7 6.1 64 186-249 230-307 (484)
175 PF08675 RNA_bind: RNA binding 95.8 0.04 8.6E-07 44.5 6.9 54 114-170 10-63 (87)
176 KOG2202|consensus 95.8 0.0051 1.1E-07 59.5 2.2 57 129-185 84-146 (260)
177 KOG0129|consensus 95.7 0.036 7.9E-07 58.5 8.3 93 106-209 363-462 (520)
178 KOG4849|consensus 95.6 0.0089 1.9E-07 59.9 3.0 70 114-183 81-158 (498)
179 KOG2416|consensus 95.5 0.026 5.7E-07 60.3 6.4 78 187-270 444-522 (718)
180 KOG4676|consensus 95.5 0.016 3.6E-07 58.9 4.7 76 189-269 9-88 (479)
181 COG5175 MOT2 Transcriptional r 95.4 0.057 1.2E-06 54.1 7.8 76 187-266 114-199 (480)
182 PF08952 DUF1866: Domain of un 95.4 0.054 1.2E-06 48.5 7.0 71 114-187 28-107 (146)
183 KOG2591|consensus 95.1 0.038 8.3E-07 58.6 5.9 86 159-250 147-234 (684)
184 KOG1996|consensus 95.0 0.046 9.9E-07 53.8 5.9 58 127-184 300-364 (378)
185 KOG2135|consensus 95.0 0.014 3E-07 60.8 2.3 82 113-198 372-454 (526)
186 PF05172 Nup35_RRM: Nup53/35/4 94.6 0.087 1.9E-06 44.4 5.7 77 187-269 6-91 (100)
187 KOG4849|consensus 94.6 0.032 7E-07 56.0 3.6 67 187-254 80-149 (498)
188 KOG2068|consensus 94.5 0.017 3.8E-07 58.0 1.5 73 114-186 78-162 (327)
189 KOG1144|consensus 94.4 0.19 4.2E-06 55.6 9.2 11 203-213 111-121 (1064)
190 PF15023 DUF4523: Protein of u 94.1 0.2 4.4E-06 44.4 7.1 73 111-185 84-160 (166)
191 PF10309 DUF2414: Protein of u 94.0 0.22 4.8E-06 38.0 6.3 53 114-169 6-62 (62)
192 KOG0163|consensus 93.9 0.6 1.3E-05 51.7 11.7 14 236-249 771-784 (1259)
193 KOG2591|consensus 93.9 0.082 1.8E-06 56.2 5.1 73 109-182 171-247 (684)
194 PF03467 Smg4_UPF3: Smg-4/UPF3 93.6 0.045 9.7E-07 51.1 2.4 74 112-185 6-96 (176)
195 KOG4285|consensus 93.2 0.22 4.7E-06 49.5 6.5 69 113-183 197-266 (350)
196 PF04847 Calcipressin: Calcipr 93.2 0.17 3.8E-06 47.4 5.6 61 126-186 8-70 (184)
197 PF07292 NID: Nmi/IFP 35 domai 93.2 0.092 2E-06 43.1 3.2 56 152-208 1-73 (88)
198 KOG2253|consensus 93.1 0.49 1.1E-05 51.7 9.5 58 184-249 37-94 (668)
199 KOG2202|consensus 92.9 0.056 1.2E-06 52.4 1.9 66 202-271 83-149 (260)
200 KOG1996|consensus 92.7 0.28 6E-06 48.5 6.3 64 201-268 300-365 (378)
201 KOG3634|consensus 92.6 0.96 2.1E-05 45.5 10.1 56 306-361 86-141 (361)
202 KOG3654|consensus 92.6 0.85 1.8E-05 48.2 10.1 71 313-384 384-455 (708)
203 KOG0115|consensus 92.4 0.17 3.6E-06 49.2 4.3 62 110-171 28-94 (275)
204 KOG4574|consensus 91.8 0.11 2.4E-06 57.9 2.6 70 116-185 301-372 (1007)
205 PF10567 Nab6_mRNP_bdg: RNA-re 91.5 1.9 4.2E-05 42.9 10.5 136 113-249 15-212 (309)
206 KOG3152|consensus 91.4 1.3 2.8E-05 43.1 9.1 65 187-251 74-151 (278)
207 PF10309 DUF2414: Protein of u 90.3 0.91 2E-05 34.7 5.6 54 188-248 6-62 (62)
208 KOG2193|consensus 90.3 0.21 4.5E-06 51.6 2.8 75 188-270 2-76 (584)
209 PF07576 BRAP2: BRCA1-associat 90.2 1.6 3.5E-05 37.4 7.8 63 114-176 14-81 (110)
210 KOG2318|consensus 90.1 1.3 2.9E-05 47.6 8.7 74 112-185 173-306 (650)
211 PF08952 DUF1866: Domain of un 89.7 0.94 2E-05 40.7 6.1 56 203-270 52-107 (146)
212 KOG3634|consensus 89.3 4.5 9.8E-05 40.9 11.1 70 320-389 93-162 (361)
213 PF03880 DbpA: DbpA RNA bindin 87.6 0.8 1.7E-05 36.2 3.9 66 115-184 2-74 (74)
214 KOG2412|consensus 87.2 4.5 9.7E-05 43.5 10.2 16 121-136 20-35 (591)
215 PF15023 DUF4523: Protein of u 86.3 2.2 4.7E-05 38.1 6.1 72 187-269 86-161 (166)
216 PF08675 RNA_bind: RNA binding 86.2 2.2 4.8E-05 34.6 5.6 53 189-249 11-63 (87)
217 KOG3054|consensus 86.2 7.6 0.00017 37.7 10.2 17 375-391 163-179 (299)
218 PTZ00146 fibrillarin; Provisio 85.7 1.4 3E-05 44.4 5.4 15 230-244 205-219 (293)
219 PF03467 Smg4_UPF3: Smg-4/UPF3 85.1 2.6 5.6E-05 39.4 6.5 80 187-267 7-95 (176)
220 KOG3973|consensus 83.2 2 4.3E-05 43.6 5.1 57 444-500 328-388 (465)
221 KOG2891|consensus 82.5 21 0.00046 35.3 11.7 20 126-145 174-193 (445)
222 KOG4364|consensus 81.7 18 0.0004 40.0 11.9 12 402-413 390-401 (811)
223 KOG2072|consensus 81.7 21 0.00045 40.6 12.5 15 152-166 455-469 (988)
224 PF11767 SET_assoc: Histone ly 80.0 6.5 0.00014 30.5 5.9 55 124-181 11-65 (66)
225 KOG2002|consensus 79.9 16 0.00034 42.3 11.1 21 371-391 868-888 (1018)
226 KOG0804|consensus 79.3 92 0.002 33.1 24.4 64 113-176 74-142 (493)
227 KOG4285|consensus 78.1 4.4 9.5E-05 40.5 5.5 57 190-254 200-256 (350)
228 PLN03086 PRLI-interacting fact 78.1 16 0.00036 40.2 10.4 11 390-400 65-75 (567)
229 KOG4019|consensus 78.0 1.7 3.6E-05 40.3 2.4 75 114-188 11-91 (193)
230 KOG4574|consensus 75.5 2 4.4E-05 48.3 2.6 72 191-269 302-373 (1007)
231 KOG3973|consensus 74.4 4.3 9.4E-05 41.2 4.4 11 12-22 395-405 (465)
232 PLN03086 PRLI-interacting fact 74.0 17 0.00036 40.1 9.1 11 336-346 21-31 (567)
233 COG4907 Predicted membrane pro 73.5 2.9 6.3E-05 44.0 3.1 12 10-21 526-537 (595)
234 KOG2135|consensus 72.3 1.9 4.2E-05 45.4 1.5 71 189-269 374-445 (526)
235 KOG3878|consensus 72.1 37 0.00081 34.5 10.2 11 309-319 92-102 (469)
236 PF02714 DUF221: Domain of unk 70.1 7.5 0.00016 39.6 5.3 56 152-209 1-56 (325)
237 KOG2068|consensus 68.2 2.8 6.1E-05 42.5 1.6 66 188-254 78-150 (327)
238 KOG1596|consensus 67.3 15 0.00032 36.1 6.1 9 231-239 227-235 (317)
239 PF05914 RIB43A: RIB43A; Inte 65.3 84 0.0018 33.1 11.9 82 309-391 276-357 (379)
240 KOG0804|consensus 65.1 15 0.00034 38.7 6.2 66 187-253 74-140 (493)
241 PF14111 DUF4283: Domain of un 65.0 5.5 0.00012 35.5 2.8 103 116-221 18-139 (153)
242 PF07946 DUF1682: Protein of u 61.4 36 0.00079 34.8 8.3 20 203-222 180-199 (321)
243 PF10567 Nab6_mRNP_bdg: RNA-re 61.1 20 0.00042 36.0 5.9 61 187-247 15-83 (309)
244 PF07576 BRAP2: BRCA1-associat 59.8 75 0.0016 27.2 8.6 71 194-266 20-91 (110)
245 KOG3088|consensus 59.7 13 0.00028 37.1 4.3 10 376-385 79-88 (313)
246 KOG2318|consensus 58.5 25 0.00055 38.3 6.5 80 185-266 172-304 (650)
247 KOG3262|consensus 57.9 25 0.00054 32.8 5.6 14 152-165 81-94 (215)
248 KOG3654|consensus 57.8 68 0.0015 34.5 9.4 22 374-395 434-455 (708)
249 KOG1308|consensus 57.6 45 0.00098 34.4 7.9 9 243-251 120-128 (377)
250 KOG4410|consensus 57.2 12 0.00025 37.2 3.5 47 114-160 331-378 (396)
251 PLN03138 Protein TOC75; Provis 54.6 45 0.00098 38.3 8.1 14 197-210 250-263 (796)
252 KOG1596|consensus 53.6 24 0.00052 34.6 5.0 12 230-241 229-240 (317)
253 PF09726 Macoilin: Transmembra 52.7 1.5E+02 0.0034 33.7 12.0 19 363-381 544-562 (697)
254 PF04847 Calcipressin: Calcipr 52.2 25 0.00054 33.0 4.9 62 200-269 8-70 (184)
255 TIGR02542 B_forsyth_147 Bacter 51.6 20 0.00044 30.8 3.7 103 121-238 11-129 (145)
256 PF06102 DUF947: Domain of unk 50.6 1.5E+02 0.0032 27.5 9.6 43 292-334 32-76 (168)
257 KOG4571|consensus 50.5 1.4E+02 0.0031 30.0 9.9 46 335-381 241-286 (294)
258 KOG2295|consensus 49.4 4.3 9.4E-05 43.7 -0.8 69 112-180 230-304 (648)
259 KOG1265|consensus 49.3 2E+02 0.0043 33.5 11.7 17 357-373 1139-1155(1189)
260 PF06098 Radial_spoke_3: Radia 46.1 2.1E+02 0.0045 29.0 10.5 10 320-329 152-161 (291)
261 KOG3915|consensus 44.9 1.4E+02 0.003 32.0 9.2 9 367-375 559-567 (641)
262 KOG1295|consensus 43.0 33 0.00071 35.6 4.4 63 112-174 6-77 (376)
263 PF11767 SET_assoc: Histone ly 41.0 1.1E+02 0.0023 23.7 6.0 48 198-253 11-58 (66)
264 PF03880 DbpA: DbpA RNA bindin 39.6 91 0.002 24.3 5.6 59 197-267 11-74 (74)
265 KOG0579|consensus 38.0 5E+02 0.011 29.6 12.4 31 326-356 955-986 (1187)
266 PF09756 DDRGK: DDRGK domain; 38.0 11 0.00023 35.6 0.0 9 378-386 65-73 (188)
267 PF02029 Caldesmon: Caldesmon; 37.6 1.1E+02 0.0024 33.3 7.5 11 127-137 60-70 (492)
268 PF02029 Caldesmon: Caldesmon; 36.9 97 0.0021 33.7 7.0 8 452-459 436-443 (492)
269 KOG4483|consensus 36.8 45 0.00098 34.8 4.2 56 187-247 391-446 (528)
270 KOG0742|consensus 36.7 4.3E+02 0.0093 28.4 11.2 11 239-249 79-89 (630)
271 KOG4483|consensus 36.6 45 0.00098 34.8 4.2 54 114-168 392-446 (528)
272 PTZ00009 heat shock 70 kDa pro 35.7 6.9E+02 0.015 28.2 15.0 10 125-134 299-308 (653)
273 PF03879 Cgr1: Cgr1 family; I 33.5 2.5E+02 0.0053 24.1 7.5 13 365-377 80-92 (108)
274 KOG3756|consensus 33.1 3.8E+02 0.0082 27.3 9.8 11 204-214 61-71 (340)
275 KOG3878|consensus 31.3 6E+02 0.013 26.2 11.2 19 373-391 205-223 (469)
276 PF03468 XS: XS domain; Inter 31.3 41 0.00088 29.1 2.5 46 199-246 29-75 (116)
277 PF12004 DUF3498: Domain of un 31.2 16 0.00035 39.6 0.0 20 371-390 440-459 (495)
278 PF03468 XS: XS domain; Inter 31.2 32 0.00069 29.8 1.8 47 115-161 10-68 (116)
279 COG1422 Predicted membrane pro 30.1 1.6E+02 0.0034 28.0 6.3 13 374-386 104-116 (201)
280 PF05672 MAP7: MAP7 (E-MAP-115 30.0 4.6E+02 0.0099 24.4 11.6 8 384-391 127-134 (171)
281 PTZ00436 60S ribosomal protein 29.6 3.1E+02 0.0067 27.8 8.5 18 193-210 30-47 (357)
282 COG5638 Uncharacterized conser 29.0 1.7E+02 0.0037 30.8 6.8 80 111-190 144-301 (622)
283 KOG4365|consensus 28.5 9.1 0.0002 40.2 -2.3 72 113-185 3-80 (572)
284 PF03439 Spt5-NGN: Early trans 28.4 87 0.0019 25.2 3.9 34 139-172 33-67 (84)
285 PRK11634 ATP-dependent RNA hel 28.0 76 0.0017 35.7 4.7 7 10-16 539-545 (629)
286 PF13904 DUF4207: Domain of un 28.0 5.9E+02 0.013 25.3 10.5 13 375-387 193-205 (264)
287 PF00403 HMA: Heavy-metal-asso 27.2 1.9E+02 0.0042 21.1 5.4 54 115-168 1-58 (62)
288 KOG4213|consensus 26.9 30 0.00065 32.2 1.0 50 199-248 118-170 (205)
289 PRK10629 EnvZ/OmpR regulon mod 26.6 3.6E+02 0.0079 23.7 7.7 70 114-185 36-109 (127)
290 PHA00370 III attachment protei 25.7 1.1E+02 0.0024 30.1 4.6 6 231-236 247-252 (297)
291 KOG3262|consensus 25.5 1.3E+02 0.0029 28.1 4.9 8 38-45 156-163 (215)
292 KOG3859|consensus 24.9 7.4E+02 0.016 25.2 12.8 10 230-239 210-219 (406)
293 KOG0579|consensus 24.8 8.8E+02 0.019 27.7 11.5 14 378-391 927-940 (1187)
294 PF03154 Atrophin-1: Atrophin- 24.2 66 0.0014 37.4 3.2 6 341-346 723-728 (982)
295 PF07292 NID: Nmi/IFP 35 domai 24.2 42 0.00091 27.6 1.3 23 112-134 51-73 (88)
296 KOG0971|consensus 24.1 7.5E+02 0.016 29.1 11.1 31 363-393 275-305 (1243)
297 PF02841 GBP_C: Guanylate-bind 23.9 7.4E+02 0.016 24.8 12.9 10 128-137 8-17 (297)
298 PF08544 GHMP_kinases_C: GHMP 23.7 2E+02 0.0044 22.3 5.3 42 128-170 37-80 (85)
299 PF15513 DUF4651: Domain of un 23.3 1.5E+02 0.0032 22.8 3.9 20 202-221 9-28 (62)
300 PRK00409 recombination and DNA 22.6 6.4E+02 0.014 29.3 10.9 6 114-119 220-225 (782)
301 TIGR00570 cdk7 CDK-activating 22.1 8.6E+02 0.019 24.9 10.4 10 199-208 30-39 (309)
302 KOG4410|consensus 21.9 1.5E+02 0.0033 29.6 4.8 48 188-239 331-378 (396)
303 PHA00370 III attachment protei 21.7 2E+02 0.0043 28.4 5.5 13 477-489 115-127 (297)
304 TIGR03636 L23_arch archaeal ri 21.6 1.8E+02 0.004 23.2 4.4 53 115-167 15-72 (77)
305 PRK12585 putative monovalent c 21.1 2.5E+02 0.0055 26.5 5.8 7 341-347 141-147 (197)
306 KOG4213|consensus 20.3 1E+02 0.0022 28.9 3.0 51 114-168 112-169 (205)
307 COG0030 KsgA Dimethyladenosine 20.1 1.2E+02 0.0026 30.2 3.7 44 115-168 97-140 (259)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.96 E-value=1.9e-28 Score=250.61 Aligned_cols=158 Identities=20% Similarity=0.389 Sum_probs=142.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec------CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEec
Q psy93 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINK------EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~------~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a 184 (503)
...|+|||+|||+++|+++|+++|+.||+|++|+|++ +++||||+|.+.++|.+||..||++.|.+++|+|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 4578999999999999999999999999999999964 3689999999999999999999999999999999998
Q ss_pred cc------ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecC
Q psy93 185 PI------NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQ 257 (503)
Q Consensus 185 ~~------~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~ 257 (503)
.+ .++|||.|||..+++++|+++|++||.|+.|.|+.| .++++++||||+|.+.++|.+||..|| ++.+ ..
T Consensus 185 ~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ln-g~~~-~g 262 (346)
T TIGR01659 185 RPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALN-NVIP-EG 262 (346)
T ss_pred cccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhC-CCcc-CC
Confidence 54 568999999999999999999999999999999988 488999999999999999999999997 5544 23
Q ss_pred CCCeEEeecCCcc
Q psy93 258 SLRPVIVEPLELT 270 (503)
Q Consensus 258 ~~rpl~V~~~~~~ 270 (503)
..++|.|.+++..
T Consensus 263 ~~~~l~V~~a~~~ 275 (346)
T TIGR01659 263 GSQPLTVRLAEEH 275 (346)
T ss_pred CceeEEEEECCcc
Confidence 4578899887654
No 2
>KOG0117|consensus
Probab=99.94 E-value=1.8e-26 Score=231.19 Aligned_cols=223 Identities=19% Similarity=0.258 Sum_probs=191.3
Q ss_pred ChhhHHHHHhhcCCCCCC---------CCCCCCccccCcCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec----
Q psy93 81 DRYFTEKIMAIQGPTLDL---------PPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINK---- 147 (503)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~---------p~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~---- 147 (503)
..+...++....+.++++ ||++ +.-......|.|||+.||.++.|++|.-||++.|+|.+++|+.
T Consensus 44 ~eaal~al~E~tgy~l~ve~gqrk~ggPpP~--weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~s 121 (506)
T KOG0117|consen 44 EEAALKALLERTGYTLVVENGQRKYGGPPPG--WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFS 121 (506)
T ss_pred HHHHHHHHHHhcCceEEEeccccccCCCCCc--ccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccC
Confidence 455566777666666655 3333 4555567789999999999999999999999999999999975
Q ss_pred --CCCceEEeeCCHHHHHHHHHHhCCcccc-CceEEEEecccccceeccCcccccCHHHHHHHhccCCC-eeeeEEEeC-
Q psy93 148 --EKMFGFIRMDYKHNADKAKAKLDGHVLK-GRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGD-IERAIVIVD- 222 (503)
Q Consensus 148 --~kg~aFV~F~~~e~A~~Ai~~l~g~~l~-g~~l~V~~a~~~~~L~V~nLp~~~tee~L~~~Fs~~G~-V~~~~v~~d- 222 (503)
++|||||+|.+.++|+.||+.||+.+|. |+.|.|+.+..++.|||+|||...++++|.+.|++.++ |+.|.|...
T Consensus 122 G~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p 201 (506)
T KOG0117|consen 122 GDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSP 201 (506)
T ss_pred CCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCc
Confidence 4899999999999999999999999987 89999999999999999999999999999999999985 777777665
Q ss_pred -CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeecCCccccccCCcc----cccCCCCchhhhhhccCcc
Q psy93 223 -ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSE----RTINKKTPEFYKQRQVGPR 297 (503)
Q Consensus 223 -~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~~~~~~~~~~~~~----k~i~k~~~~~~kere~~~r 297 (503)
+..+++|||||+|.+...|..|..+|-.+.+.+ .+..++|+|+++..+.+..+. -+.+++++...+++.+...
T Consensus 202 ~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~kl--wgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~ 279 (506)
T KOG0117|consen 202 DDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKL--WGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKL 279 (506)
T ss_pred cccccccceEEEEeecchhHHHHHhhccCCceee--cCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHH
Confidence 456789999999999999999999988788776 467899999999887766544 2568899999999999999
Q ss_pred cCCCCCcchh
Q psy93 298 FATVNSFEFE 307 (503)
Q Consensus 298 f~~~g~~e~e 307 (503)
|.+++.++..
T Consensus 280 F~~~G~veRV 289 (506)
T KOG0117|consen 280 FNEFGKVERV 289 (506)
T ss_pred HHhccceEEe
Confidence 9999988743
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.94 E-value=9.8e-26 Score=232.73 Aligned_cols=154 Identities=25% Similarity=0.408 Sum_probs=138.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec------CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINK------EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI 186 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~------~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~ 186 (503)
.++|||+|||+++|+++|+++|+.||+|.+|+|++ ++|||||+|.+.++|.+||..||+..|.|++|.|.|+.+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 57899999999999999999999999999999974 358999999999999999999999999999999999864
Q ss_pred ------ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCC
Q psy93 187 ------NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSL 259 (503)
Q Consensus 187 ------~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~-~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~ 259 (503)
.++|||.|||..+++++|..+|+.||.|..+.++.+. ++.+++||||+|.+.++|..|+..|| +..+ ....
T Consensus 83 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~-g~~~-~g~~ 160 (352)
T TIGR01661 83 SSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLN-GTTP-SGCT 160 (352)
T ss_pred cccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhC-CCcc-CCCc
Confidence 4589999999999999999999999999999998874 67889999999999999999999998 4443 2344
Q ss_pred CeEEeecCC
Q psy93 260 RPVIVEPLE 268 (503)
Q Consensus 260 rpl~V~~~~ 268 (503)
.++.|.++.
T Consensus 161 ~~i~v~~a~ 169 (352)
T TIGR01661 161 EPITVKFAN 169 (352)
T ss_pred eeEEEEECC
Confidence 677777754
No 4
>KOG0144|consensus
Probab=99.93 E-value=4.2e-26 Score=227.49 Aligned_cols=164 Identities=26% Similarity=0.427 Sum_probs=150.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCc-cccC--ceEEE
Q psy93 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGH-VLKG--RSLKI 181 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~-~l~g--~~l~V 181 (503)
.+..+|||+-||..++|.||+.+|++||.|.+|.|+++ +|||||.|.+.++|.+|+..||.. .|.| .+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 34567999999999999999999999999999999876 689999999999999999999988 5555 78999
Q ss_pred Eeccc-------ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeee
Q psy93 182 RFAPI-------NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFF 254 (503)
Q Consensus 182 ~~a~~-------~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~ 254 (503)
++++. ..+|||+-|+..+++.+|+++|++||.|++|.|++|+.+.++|+|||+|.+++.|..||+.|| +.+.
T Consensus 112 k~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~n-g~~t 190 (510)
T KOG0144|consen 112 KYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALN-GTQT 190 (510)
T ss_pred cccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhc-ccee
Confidence 99864 568999999999999999999999999999999999999999999999999999999999997 7777
Q ss_pred ecCCCCeEEeecCCccccccC
Q psy93 255 LTQSLRPVIVEPLELTDEIDG 275 (503)
Q Consensus 255 ~~~~~rpl~V~~~~~~~~~~~ 275 (503)
+..+..|++|+|++..++.+.
T Consensus 191 meGcs~PLVVkFADtqkdk~~ 211 (510)
T KOG0144|consen 191 MEGCSQPLVVKFADTQKDKDG 211 (510)
T ss_pred eccCCCceEEEecccCCCchH
Confidence 788999999999999876543
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.93 E-value=9.7e-26 Score=247.04 Aligned_cols=187 Identities=25% Similarity=0.408 Sum_probs=161.2
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec------CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc--
Q psy93 115 RLYLGNIGGDITENDIIELFKPYGETQELFINK------EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI-- 186 (503)
Q Consensus 115 ~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~------~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~-- 186 (503)
+|||+|||+++|+++|+++|+.||+|.+|+|.+ ++|||||+|.+.++|.+||+.|++..|.|++|+|.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 699999999999999999999999999999964 368999999999999999999999999999999999852
Q ss_pred ------ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCC
Q psy93 187 ------NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLR 260 (503)
Q Consensus 187 ------~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~r 260 (503)
..+|||+|||.++++++|+++|+.||.|.+|+|+.+.++++++||||+|.+.++|.+|+..|| +..+ .++
T Consensus 82 ~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~ln-g~~~---~~~ 157 (562)
T TIGR01628 82 SLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVN-GMLL---NDK 157 (562)
T ss_pred cccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhc-ccEe---cCc
Confidence 357999999999999999999999999999999999999999999999999999999999997 6665 577
Q ss_pred eEEeecCCcccccc----CCcccccCCCCchhhhhhccCcccCCCCCcc
Q psy93 261 PVIVEPLELTDEID----GLSERTINKKTPEFYKQRQVGPRFATVNSFE 305 (503)
Q Consensus 261 pl~V~~~~~~~~~~----~~~~k~i~k~~~~~~kere~~~rf~~~g~~e 305 (503)
.+.|.......+.. .....+++++++...++.++...|..+|.+.
T Consensus 158 ~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~ 206 (562)
T TIGR01628 158 EVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEIT 206 (562)
T ss_pred eEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEE
Confidence 88887655443321 1223455667777778888888888877654
No 6
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.93 E-value=7.5e-25 Score=235.67 Aligned_cols=155 Identities=21% Similarity=0.338 Sum_probs=139.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec------CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEec
Q psy93 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINK------EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~------~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a 184 (503)
...|+|||+|||+++++++|+++|+.||+|.+|.|+. ++|||||+|.+.++|.+||..||+..|.|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 4568999999999999999999999999999999863 5899999999999999999999999999999999765
Q ss_pred c-----------------cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCC-CCCceeEEEEEeCCHHHHHHHHH
Q psy93 185 P-----------------INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQALR 246 (503)
Q Consensus 185 ~-----------------~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~-~g~skg~gfV~F~s~e~A~kAl~ 246 (503)
. ..++|||+|||+++++++|+++|+.||.|.+|.|.+|. ++.++|||||+|.+.++|.+|+.
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~ 264 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 264 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHH
Confidence 3 13589999999999999999999999999999999984 67899999999999999999999
Q ss_pred HhhCCeeeecCCCCeEEeecCCc
Q psy93 247 RCAEGCFFLTQSLRPVIVEPLEL 269 (503)
Q Consensus 247 ~ln~g~~~~~~~~rpl~V~~~~~ 269 (503)
.|| +..+ .++.|.|.++..
T Consensus 265 amN-g~el---gGr~LrV~kAi~ 283 (612)
T TIGR01645 265 SMN-LFDL---GGQYLRVGKCVT 283 (612)
T ss_pred HhC-CCee---CCeEEEEEecCC
Confidence 998 5555 688888876553
No 7
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.92 E-value=1.3e-24 Score=233.40 Aligned_cols=226 Identities=19% Similarity=0.237 Sum_probs=179.5
Q ss_pred CChhhHHHHHhhcCCCCCCCCCCC-------CccccCcCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec-----
Q psy93 80 GDRYFTEKIMAIQGPTLDLPPSEP-------QNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINK----- 147 (503)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~p~~~~-------~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~----- 147 (503)
++.....++....+.++...+... .+........|+|||+|||.++++++|+++|++||+|.+|+|++
T Consensus 18 ~~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~ 97 (578)
T TIGR01648 18 PDEAALKALLERTGYTLVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQ 97 (578)
T ss_pred ccHHHHHHHHHhhCccccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCC
Confidence 566667777777776665521110 12223344569999999999999999999999999999999863
Q ss_pred CCCceEEeeCCHHHHHHHHHHhCCcccc-CceEEEEecccccceeccCcccccCHHHHHHHhccCCC-eeeeEEEeC--C
Q psy93 148 EKMFGFIRMDYKHNADKAKAKLDGHVLK-GRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGD-IERAIVIVD--E 223 (503)
Q Consensus 148 ~kg~aFV~F~~~e~A~~Ai~~l~g~~l~-g~~l~V~~a~~~~~L~V~nLp~~~tee~L~~~Fs~~G~-V~~~~v~~d--~ 223 (503)
+++||||+|.+.++|++||+.||+..|. ++.|.|.++...++|||.|||.++++++|.+.|++++. |+.+.++.. .
T Consensus 98 sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~ 177 (578)
T TIGR01648 98 NRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAAD 177 (578)
T ss_pred ccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccc
Confidence 5899999999999999999999999886 89999999999999999999999999999999999974 444444332 3
Q ss_pred CCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeecCCccccccC----CcccccCCCCchhhhhhccCcccC
Q psy93 224 RGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDG----LSERTINKKTPEFYKQRQVGPRFA 299 (503)
Q Consensus 224 ~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~~~~~~~~~~----~~~k~i~k~~~~~~kere~~~rf~ 299 (503)
.+++++||||+|.+.++|.+|+..|+.+.+.+ .++.|.|.|+.+..+.+. ....+++.+++...+++++...|.
T Consensus 178 kgKnRGFAFVeF~s~edAa~AirkL~~gki~l--~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~ 255 (578)
T TIGR01648 178 KKKNRGFAFVEYESHRAAAMARRKLMPGRIQL--WGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFS 255 (578)
T ss_pred cCccCceEEEEcCCHHHHHHHHHHhhccceEe--cCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHH
Confidence 56789999999999999999999987555433 578899999887654322 123466778888888899999999
Q ss_pred CC--CCcchh
Q psy93 300 TV--NSFEFE 307 (503)
Q Consensus 300 ~~--g~~e~e 307 (503)
.+ +.++..
T Consensus 256 ~f~~G~I~rV 265 (578)
T TIGR01648 256 EFKPGKVERV 265 (578)
T ss_pred hcCCCceEEE
Confidence 98 777643
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.92 E-value=4.9e-24 Score=220.06 Aligned_cols=156 Identities=26% Similarity=0.386 Sum_probs=139.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec------CCCceEEeeCCHHHHHHHHHHhCCccccC--ceEEEEe
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINK------EKMFGFIRMDYKHNADKAKAKLDGHVLKG--RSLKIRF 183 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~------~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g--~~l~V~~ 183 (503)
..++|||+|||.++++++|+.+|+.||.|..+.+.. +++||||+|.+.++|..||+.||+..+.+ .+|.|.|
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 457899999999999999999999999999988853 37899999999999999999999998887 5678877
Q ss_pred cccc----------------------------------------------------------------------------
Q psy93 184 APIN---------------------------------------------------------------------------- 187 (503)
Q Consensus 184 a~~~---------------------------------------------------------------------------- 187 (503)
+...
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 5210
Q ss_pred ----------------------cceeccCcccccCHHHHHHHhccCCCeeeeEEEeCC-CCCceeEEEEEeCCHHHHHHH
Q psy93 188 ----------------------AAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQA 244 (503)
Q Consensus 188 ----------------------~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~-~g~skg~gfV~F~s~e~A~kA 244 (503)
.+|||.|||.++++++|+++|++||.|.+|+|+.|. ++.++|||||+|.+.++|.+|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 149999999999999999999999999999999995 999999999999999999999
Q ss_pred HHHhhCCeeeecCCCCeEEeecCCccc
Q psy93 245 LRRCAEGCFFLTQSLRPVIVEPLELTD 271 (503)
Q Consensus 245 l~~ln~g~~~~~~~~rpl~V~~~~~~~ 271 (503)
|..|| +..+ .+++|.|.+...+.
T Consensus 328 i~~ln-G~~~---~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 328 ILSLN-GYTL---GNRVLQVSFKTNKA 350 (352)
T ss_pred HHHhC-CCEE---CCeEEEEEEccCCC
Confidence 99997 6666 79999999987653
No 9
>KOG0148|consensus
Probab=99.91 E-value=1.3e-23 Score=198.83 Aligned_cols=151 Identities=25% Similarity=0.432 Sum_probs=139.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec------CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc-
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINK------EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP- 185 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~------~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~- 185 (503)
.-.|||+.|.+.|+.++|++.|.+||+|.+++|++ +|||+||.|.+.++|++||..|||.-|.+|.|+-.|+.
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 44699999999999999999999999999999974 58999999999999999999999999999999999994
Q ss_pred ---------------------cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHH
Q psy93 186 ---------------------INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQA 244 (503)
Q Consensus 186 ---------------------~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kA 244 (503)
.+++|||+|++..+++++|++.|+.||.|.+|+|.++ ++|+||.|+++++|.+|
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGYaFVrF~tkEaAahA 216 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGYAFVRFETKEAAAHA 216 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cceEEEEecchhhHHHH
Confidence 2578999999999999999999999999999999999 89999999999999999
Q ss_pred HHHhhCCeeeecCCCCeEEeecCCcccc
Q psy93 245 LRRCAEGCFFLTQSLRPVIVEPLELTDE 272 (503)
Q Consensus 245 l~~ln~g~~~~~~~~rpl~V~~~~~~~~ 272 (503)
|..+| +..+ .+.+|.+.|-+..++
T Consensus 217 Iv~mN-ntei---~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 217 IVQMN-NTEI---GGQLVRCSWGKEGDD 240 (321)
T ss_pred HHHhc-Ccee---CceEEEEeccccCCC
Confidence 99998 5545 688999999776644
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.91 E-value=1.5e-23 Score=229.77 Aligned_cols=193 Identities=19% Similarity=0.308 Sum_probs=162.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec-----CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc-
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINK-----EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP- 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~-----~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~- 185 (503)
..++|||+|||.++++++|+++|+.||.|.+|+|.. +++||||+|.+.++|.+||+.||+..+.++.|.|....
T Consensus 87 ~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~ 166 (562)
T TIGR01628 87 GVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIK 166 (562)
T ss_pred CCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccc
Confidence 456899999999999999999999999999999864 57999999999999999999999999999999996542
Q ss_pred ----------cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeee-
Q psy93 186 ----------INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFF- 254 (503)
Q Consensus 186 ----------~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~- 254 (503)
..++|||+|||.++|+++|+++|+.||.|.++.++.+.++.+++||||+|.+.++|.+|+..|+ +..+
T Consensus 167 ~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~-g~~i~ 245 (562)
T TIGR01628 167 KHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMN-GKKIG 245 (562)
T ss_pred ccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhC-CcEec
Confidence 2357999999999999999999999999999999999889999999999999999999999997 4444
Q ss_pred ecCCCCeEEeecCCccccc-----------------cCCcccccCCCCchhhhhhccCcccCCCCCcc
Q psy93 255 LTQSLRPVIVEPLELTDEI-----------------DGLSERTINKKTPEFYKQRQVGPRFATVNSFE 305 (503)
Q Consensus 255 ~~~~~rpl~V~~~~~~~~~-----------------~~~~~k~i~k~~~~~~kere~~~rf~~~g~~e 305 (503)
....++.+.|.++....+. ......+++++++...++.++...|..+|.+.
T Consensus 246 ~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~ 313 (562)
T TIGR01628 246 LAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEIT 313 (562)
T ss_pred ccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeE
Confidence 2233677888776554332 11222355667777778888888898888764
No 11
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.90 E-value=3.4e-23 Score=221.34 Aligned_cols=152 Identities=26% Similarity=0.342 Sum_probs=138.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec------CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINK------EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~------~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
..++|||+|||.++++++|+++|+.||+|..|.|++ ++|||||+|.+.++|.+||. |++..|.|++|.|.++.
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~ 166 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQ 166 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecc
Confidence 467899999999999999999999999999999975 37899999999999999996 89999999999998753
Q ss_pred ------------------cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCC-CCCceeEEEEEeCCHHHHHHHHH
Q psy93 186 ------------------INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQALR 246 (503)
Q Consensus 186 ------------------~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~-~g~skg~gfV~F~s~e~A~kAl~ 246 (503)
...+|||.|||..+++++|.++|+.||.|..|.++.+. ++.+++||||+|.+.++|.+|+.
T Consensus 167 ~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~ 246 (457)
T TIGR01622 167 AEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALE 246 (457)
T ss_pred hhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHH
Confidence 13689999999999999999999999999999999885 56899999999999999999999
Q ss_pred HhhCCeeeecCCCCeEEeecCC
Q psy93 247 RCAEGCFFLTQSLRPVIVEPLE 268 (503)
Q Consensus 247 ~ln~g~~~~~~~~rpl~V~~~~ 268 (503)
.|| +..+ .+++|.|.++.
T Consensus 247 ~l~-g~~i---~g~~i~v~~a~ 264 (457)
T TIGR01622 247 VMN-GFEL---AGRPIKVGYAQ 264 (457)
T ss_pred hcC-CcEE---CCEEEEEEEcc
Confidence 997 5555 68999999976
No 12
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.90 E-value=6.4e-23 Score=220.33 Aligned_cols=152 Identities=16% Similarity=0.237 Sum_probs=132.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHh--CCccccCceEEEEecccc---
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL--DGHVLKGRSLKIRFAPIN--- 187 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l--~g~~l~g~~l~V~~a~~~--- 187 (503)
+.+|||+|||+++|+++|+++|+.||+|.+|.|+++|+||||+|.+.++|.+||..| ++..|.|++|.|.|+...
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~ 81 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIK 81 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcccc
Confidence 568999999999999999999999999999999999999999999999999999874 678999999999997421
Q ss_pred ---------------cceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCe
Q psy93 188 ---------------AAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGC 252 (503)
Q Consensus 188 ---------------~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~ 252 (503)
.+|+|.||+..+++++|+++|+.||.|.+|.|+++. .+++|||+|.+.++|.+|+..|| +.
T Consensus 82 ~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~---~~~~afVef~~~~~A~~A~~~Ln-g~ 157 (481)
T TIGR01649 82 RDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN---NVFQALVEFESVNSAQHAKAALN-GA 157 (481)
T ss_pred cCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC---CceEEEEEECCHHHHHHHHHHhc-CC
Confidence 268999999999999999999999999999998763 24689999999999999999998 54
Q ss_pred eeecCCCCeEEeecCCc
Q psy93 253 FFLTQSLRPVIVEPLEL 269 (503)
Q Consensus 253 ~~~~~~~rpl~V~~~~~ 269 (503)
.+.. ..+.+.|.+++.
T Consensus 158 ~i~~-~~~~l~v~~sk~ 173 (481)
T TIGR01649 158 DIYN-GCCTLKIEYAKP 173 (481)
T ss_pred cccC-CceEEEEEEecC
Confidence 4422 235677777654
No 13
>KOG0131|consensus
Probab=99.90 E-value=1.5e-23 Score=188.15 Aligned_cols=157 Identities=29% Similarity=0.439 Sum_probs=141.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
...||||+||+..++++.|++||-++|+|..+.|+++ +|||||+|.+.++|+-||+.||...|.|++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 4568999999999999999999999999999999754 7999999999999999999999999999999999885
Q ss_pred -------cccceeccCcccccCHHHHHHHhccCCCeeee-EEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeec
Q psy93 186 -------INAAIKVKNLTSCVTNELLELAFGVFGDIERA-IVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLT 256 (503)
Q Consensus 186 -------~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~-~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~ 256 (503)
.+.+|||+||.+.+++..|.+.|+.||.+... +|+++ .++.+++|+||.|++.+.+.+|+..+| +.++
T Consensus 88 ~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~n-gq~l-- 164 (203)
T KOG0131|consen 88 AHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMN-GQYL-- 164 (203)
T ss_pred cccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhc-cchh--
Confidence 25789999999999999999999999998763 67777 468899999999999999999999997 7766
Q ss_pred CCCCeEEeecCCcccc
Q psy93 257 QSLRPVIVEPLELTDE 272 (503)
Q Consensus 257 ~~~rpl~V~~~~~~~~ 272 (503)
+.++++|..+..++.
T Consensus 165 -~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 165 -CNRPITVSYAFKKDT 179 (203)
T ss_pred -cCCceEEEEEEecCC
Confidence 789999988766543
No 14
>KOG0145|consensus
Probab=99.90 E-value=2.4e-23 Score=195.75 Aligned_cols=157 Identities=24% Similarity=0.410 Sum_probs=143.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCC------CceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEK------MFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k------g~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
..|+|+|.-||.++|+++|+.||...|+|++|+++++| ||+||.|-+++||++||..|||..|..++|+|.++.
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 35689999999999999999999999999999998775 799999999999999999999999999999999998
Q ss_pred c------ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCC
Q psy93 186 I------NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQS 258 (503)
Q Consensus 186 ~------~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~ 258 (503)
| ..+|||.+||..+|..+|..+|+.||.|...+|+.| -++.++|.+||.|+...+|..||..|| +... ..+
T Consensus 120 PSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lN-G~~P-~g~ 197 (360)
T KOG0145|consen 120 PSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLN-GQKP-SGC 197 (360)
T ss_pred CChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhcc-CCCC-CCC
Confidence 7 468999999999999999999999999999888888 589999999999999999999999998 5443 345
Q ss_pred CCeEEeecCCcc
Q psy93 259 LRPVIVEPLELT 270 (503)
Q Consensus 259 ~rpl~V~~~~~~ 270 (503)
..||+|+++...
T Consensus 198 tepItVKFannP 209 (360)
T KOG0145|consen 198 TEPITVKFANNP 209 (360)
T ss_pred CCCeEEEecCCc
Confidence 678999987544
No 15
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.89 E-value=1.5e-22 Score=219.31 Aligned_cols=155 Identities=24% Similarity=0.305 Sum_probs=136.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccC------------CCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCce
Q psy93 111 ANNCRLYLGNIGGDITENDIIELFKPY------------GETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRS 178 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~~~F~~~------------G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~ 178 (503)
...++|||+|||+++|+++|.++|..| +.|..+.+.++++||||+|.+.++|..|| .|+++.|.|++
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~~~g~~ 251 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAM-ALDSIIYSNVF 251 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhh-cCCCeEeeCce
Confidence 346789999999999999999999864 46778888889999999999999999999 59999999999
Q ss_pred EEEEecc-----------------------------------cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-
Q psy93 179 LKIRFAP-----------------------------------INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD- 222 (503)
Q Consensus 179 l~V~~a~-----------------------------------~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d- 222 (503)
|+|.... ...+|||+|||..+++++|.++|+.||.|..+.|+.+
T Consensus 252 l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~ 331 (509)
T TIGR01642 252 LKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDI 331 (509)
T ss_pred eEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC
Confidence 9996321 1357999999999999999999999999999999988
Q ss_pred CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeecCCcc
Q psy93 223 ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELT 270 (503)
Q Consensus 223 ~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~~~~~ 270 (503)
.++.++|||||+|.+.++|..|+..|| +..+ .++.|.|.++...
T Consensus 332 ~~g~~~g~afv~f~~~~~a~~A~~~l~-g~~~---~~~~l~v~~a~~~ 375 (509)
T TIGR01642 332 ATGLSKGYAFCEYKDPSVTDVAIAALN-GKDT---GDNKLHVQRACVG 375 (509)
T ss_pred CCCCcCeEEEEEECCHHHHHHHHHHcC-CCEE---CCeEEEEEECccC
Confidence 578899999999999999999999997 6665 5778888887543
No 16
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.88 E-value=6.1e-22 Score=212.77 Aligned_cols=142 Identities=20% Similarity=0.263 Sum_probs=126.5
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHhhccCCCeEEEEEecC-CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc---
Q psy93 111 ANNCRLYLGNIGG-DITENDIIELFKPYGETQELFINKE-KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP--- 185 (503)
Q Consensus 111 ~~~~~l~V~nLp~-~~te~~L~~~F~~~G~V~~v~i~~~-kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~--- 185 (503)
.++++|||+|||+ .+|+++|+++|+.||.|.+|+|+++ ++||||+|.+.++|..||..||+..|.|++|.|.+++
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~ 352 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQN 352 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccccc
Confidence 3568999999997 6999999999999999999999875 6899999999999999999999999999999998762
Q ss_pred ----------------------------------------cccceeccCcccccCHHHHHHHhccCCC--eeeeEEEeCC
Q psy93 186 ----------------------------------------INAAIKVKNLTSCVTNELLELAFGVFGD--IERAIVIVDE 223 (503)
Q Consensus 186 ----------------------------------------~~~~L~V~nLp~~~tee~L~~~Fs~~G~--V~~~~v~~d~ 223 (503)
++.+|||.|||..+++++|+++|+.||. |..+++....
T Consensus 353 ~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~ 432 (481)
T TIGR01649 353 VQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKD 432 (481)
T ss_pred ccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCC
Confidence 1247999999999999999999999998 8888876554
Q ss_pred CCCceeEEEEEeCCHHHHHHHHHHhhCCeee
Q psy93 224 RGNSKCEGIVEFARKPAAAQALRRCAEGCFF 254 (503)
Q Consensus 224 ~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~ 254 (503)
+. .+++|||+|.+.++|.+||..|| +..+
T Consensus 433 ~~-~~~~gfVeF~~~e~A~~Al~~ln-~~~l 461 (481)
T TIGR01649 433 NE-RSKMGLLEWESVEDAVEALIALN-HHQL 461 (481)
T ss_pred CC-cceeEEEEcCCHHHHHHHHHHhc-CCcc
Confidence 33 47899999999999999999997 5554
No 17
>KOG0127|consensus
Probab=99.86 E-value=1.5e-21 Score=199.72 Aligned_cols=154 Identities=21% Similarity=0.294 Sum_probs=141.2
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc-
Q psy93 114 CRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI- 186 (503)
Q Consensus 114 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~- 186 (503)
.||||++||++++.++|.++|+.+|+|..|.++.+ +||+||+|+-.+|+++|+..++++.|.|+.|.|.++.+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 68999999999999999999999999999999753 68999999999999999999999999999999988731
Q ss_pred -------------------------------ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEe
Q psy93 187 -------------------------------NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEF 235 (503)
Q Consensus 187 -------------------------------~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F 235 (503)
...|.|.|||+.+...+|+.+|+.||.|..|.|++...++--|||||.|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 4579999999999999999999999999999999887777779999999
Q ss_pred CCHHHHHHHHHHhhCCeeeecCCCCeEEeecCCccc
Q psy93 236 ARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTD 271 (503)
Q Consensus 236 ~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~~~~~~ 271 (503)
....+|.+|++.+| +..+ .+|||.|.|+..++
T Consensus 166 k~~~dA~~Al~~~N-~~~i---~gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 166 KEKKDAEKALEFFN-GNKI---DGRPVAVDWAVDKD 197 (678)
T ss_pred eeHHHHHHHHHhcc-Ccee---cCceeEEeeecccc
Confidence 99999999999998 5555 69999999987653
No 18
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.86 E-value=6.9e-21 Score=204.82 Aligned_cols=151 Identities=26% Similarity=0.421 Sum_probs=130.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCC-eEEEEEe-------cCCCceEEeeCCHHHHHHHHHHhCC--ccccCceEE
Q psy93 111 ANNCRLYLGNIGGDITENDIIELFKPYGE-TQELFIN-------KEKMFGFIRMDYKHNADKAKAKLDG--HVLKGRSLK 180 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~-V~~v~i~-------~~kg~aFV~F~~~e~A~~Ai~~l~g--~~l~g~~l~ 180 (503)
...++|||+|||.++|+++|.++|++++. |+++.+. ++++||||+|.+.++|..|+..|+. ..+.++.|.
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~ 215 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIA 215 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEE
Confidence 34689999999999999999999999974 4444442 3579999999999999999998864 367899999
Q ss_pred EEeccc-----------ccceeccCcccccCHHHHHHHhccC--CCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHH
Q psy93 181 IRFAPI-----------NAAIKVKNLTSCVTNELLELAFGVF--GDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRR 247 (503)
Q Consensus 181 V~~a~~-----------~~~L~V~nLp~~~tee~L~~~Fs~~--G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ 247 (503)
|.|+.+ .++|||+||+.++++++|+++|+.| |.|++|.++++ ||||+|.+.++|.+|+..
T Consensus 216 VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rg-------fAFVeF~s~e~A~kAi~~ 288 (578)
T TIGR01648 216 VDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRD-------YAFVHFEDREDAVKAMDE 288 (578)
T ss_pred EEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecC-------eEEEEeCCHHHHHHHHHH
Confidence 999864 3579999999999999999999999 99999987654 999999999999999999
Q ss_pred hhCCeeeecCCCCeEEeecCCcccc
Q psy93 248 CAEGCFFLTQSLRPVIVEPLELTDE 272 (503)
Q Consensus 248 ln~g~~~~~~~~rpl~V~~~~~~~~ 272 (503)
|| +..+ .++.|.|.++.+.+.
T Consensus 289 ln-G~~i---~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 289 LN-GKEL---EGSEIEVTLAKPVDK 309 (578)
T ss_pred hC-CCEE---CCEEEEEEEccCCCc
Confidence 97 6666 689999999977644
No 19
>KOG0117|consensus
Probab=99.86 E-value=4.4e-21 Score=192.63 Aligned_cols=153 Identities=27% Similarity=0.415 Sum_probs=134.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCC-eEEEEEe-------cCCCceEEeeCCHHHHHHHHHHhCCc--cccCceEEE
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGE-TQELFIN-------KEKMFGFIRMDYKHNADKAKAKLDGH--VLKGRSLKI 181 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~-V~~v~i~-------~~kg~aFV~F~~~e~A~~Ai~~l~g~--~l~g~~l~V 181 (503)
.+|+|||+|||.+.++++|.+-|++.++ |+.|.|. +++|||||+|.+...|..|...|-.- .|.|..+.|
T Consensus 163 an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tV 242 (506)
T KOG0117|consen 163 ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITV 242 (506)
T ss_pred ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCccee
Confidence 4789999999999999999999999985 6666663 56899999999999999888776443 677999999
Q ss_pred Eeccc-----------ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhC
Q psy93 182 RFAPI-----------NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAE 250 (503)
Q Consensus 182 ~~a~~-----------~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~ 250 (503)
.||.+ -..|||+||+.++|++.|+++|+.||.|+.|+.++| ||||.|.+.++|.+||+.+|
T Consensus 243 dWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVHf~eR~davkAm~~~n- 314 (506)
T KOG0117|consen 243 DWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVHFAEREDAVKAMKETN- 314 (506)
T ss_pred eccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEEeecchHHHHHHHHHhc-
Confidence 99976 257999999999999999999999999999999877 99999999999999999997
Q ss_pred CeeeecCCCCeEEeecCCccccccC
Q psy93 251 GCFFLTQSLRPVIVEPLELTDEIDG 275 (503)
Q Consensus 251 g~~~~~~~~rpl~V~~~~~~~~~~~ 275 (503)
+..+ .+.+|-|..+++.++...
T Consensus 315 gkel---dG~~iEvtLAKP~~k~k~ 336 (506)
T KOG0117|consen 315 GKEL---DGSPIEVTLAKPVDKKKK 336 (506)
T ss_pred Ccee---cCceEEEEecCChhhhcc
Confidence 6666 688999999988876443
No 20
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.85 E-value=1.2e-20 Score=204.31 Aligned_cols=155 Identities=21% Similarity=0.291 Sum_probs=131.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec------CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINK------EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~------~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
..++|||+|||..+|+++|+++|+.||.|..|.|++ ++|||||+|.+.++|..||..||+..|.++.|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 357899999999999999999999999999998864 47999999999999999999999999999999998862
Q ss_pred ----------------------------------cccceeccCcccc--c--------CHHHHHHHhccCCCeeeeEEEe
Q psy93 186 ----------------------------------INAAIKVKNLTSC--V--------TNELLELAFGVFGDIERAIVIV 221 (503)
Q Consensus 186 ----------------------------------~~~~L~V~nLp~~--~--------tee~L~~~Fs~~G~V~~~~v~~ 221 (503)
++.+|+|.||... + ..++|+++|++||.|..|.|++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~ 453 (509)
T TIGR01642 374 VGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPR 453 (509)
T ss_pred cCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeec
Confidence 2345777787531 1 1267899999999999999987
Q ss_pred CC----CCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeecCCcc
Q psy93 222 DE----RGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELT 270 (503)
Q Consensus 222 d~----~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~~~~~ 270 (503)
+. ++...|++||+|.+.++|.+|+..|| +..+ .++.|.|.+++..
T Consensus 454 ~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~ln-Gr~~---~gr~v~~~~~~~~ 502 (509)
T TIGR01642 454 PNGDRNSTPGVGKVFLEYADVRSAEKAMEGMN-GRKF---NDRVVVAAFYGED 502 (509)
T ss_pred cCcCCCcCCCcceEEEEECCHHHHHHHHHHcC-CCEE---CCeEEEEEEeCHH
Confidence 52 34557899999999999999999998 6666 6899999887654
No 21
>KOG0109|consensus
Probab=99.85 E-value=2e-21 Score=185.62 Aligned_cols=141 Identities=26% Similarity=0.448 Sum_probs=130.3
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc----ccce
Q psy93 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI----NAAI 190 (503)
Q Consensus 115 ~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~----~~~L 190 (503)
+|||+|||..+++.+|+.||.+||+|++|.|+ |.|+||..++...|..||..||+..|+|..|.|+.+++ +++|
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv--KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~stkl 81 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIV--KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKASTKL 81 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeee--cccceEEeecccccHHHHhhcccceecceEEEEEeccccCCCcccc
Confidence 59999999999999999999999999999998 56999999999999999999999999999999998864 5789
Q ss_pred eccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeecCC
Q psy93 191 KVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLE 268 (503)
Q Consensus 191 ~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~~~ 268 (503)
+|.||.+..+.++|+..|.+||.|.+|+|++| |+||.|+..++|..|+..|| +..+ .+++++|....
T Consensus 82 ~vgNis~tctn~ElRa~fe~ygpviecdivkd-------y~fvh~d~~eda~~air~l~-~~~~---~gk~m~vq~st 148 (346)
T KOG0109|consen 82 HVGNISPTCTNQELRAKFEKYGPVIECDIVKD-------YAFVHFDRAEDAVEAIRGLD-NTEF---QGKRMHVQLST 148 (346)
T ss_pred ccCCCCccccCHHHhhhhcccCCceeeeeecc-------eeEEEEeeccchHHHHhccc-cccc---ccceeeeeeec
Confidence 99999999999999999999999999999977 99999999999999999998 5545 58888876543
No 22
>KOG0123|consensus
Probab=99.85 E-value=1.1e-20 Score=194.64 Aligned_cols=183 Identities=23% Similarity=0.389 Sum_probs=151.1
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC---CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc-ccc
Q psy93 114 CRLYLGNIGGDITENDIIELFKPYGETQELFINKE---KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI-NAA 189 (503)
Q Consensus 114 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~---kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~-~~~ 189 (503)
..|||+ +++|+..|.++|+++|+|++|++.++ -|||||.|.++++|.+||+.||...|.|++|+|.|+.. ...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~~ 78 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPSL 78 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCce
Confidence 359999 89999999999999999999998654 58999999999999999999999999999999999964 345
Q ss_pred eeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeecCCc
Q psy93 190 IKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLEL 269 (503)
Q Consensus 190 L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~~~~ 269 (503)
|||.||+++++..+|.++|+.||.|.+|+|.++.+| +++| ||+|++.++|.+|+..+| +.++ .++.+.|-+...
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~n-g~ll---~~kki~vg~~~~ 152 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLN-GMLL---NGKKIYVGLFER 152 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhc-Cccc---CCCeeEEeeccc
Confidence 999999999999999999999999999999999888 8999 999999999999999997 7766 688888877666
Q ss_pred cccccCCc-------ccccCCCCchhhhhhccCcccCCCCCcc
Q psy93 270 TDEIDGLS-------ERTINKKTPEFYKQRQVGPRFATVNSFE 305 (503)
Q Consensus 270 ~~~~~~~~-------~k~i~k~~~~~~kere~~~rf~~~g~~e 305 (503)
..+..... ...+.++.........+.+.|..++++.
T Consensus 153 ~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~ 195 (369)
T KOG0123|consen 153 KEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSIT 195 (369)
T ss_pred hhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcce
Confidence 54432211 1123333443344445556666666543
No 23
>KOG0115|consensus
Probab=99.85 E-value=1.6e-21 Score=183.83 Aligned_cols=204 Identities=45% Similarity=0.619 Sum_probs=177.0
Q ss_pred HHHHHHHHHhCCccccCceEEEEecccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHH
Q psy93 160 HNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKP 239 (503)
Q Consensus 160 e~A~~Ai~~l~g~~l~g~~l~V~~a~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e 239 (503)
.-|..|...|+++...++.|.|.|+.. ..|+|.||+..++.+.|...|+.||.|....++.|..+++.+.++|.|....
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~-a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~ 83 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH-AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKP 83 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc-ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcch
Confidence 356677778999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCeeeecCCCCeEEeecCCccccccCCcccccCCCCchhhhhhccCcccCCCCCcchhhhhhhHHHHHHH
Q psy93 240 AAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELY 319 (503)
Q Consensus 240 ~A~kAl~~ln~g~~~~~~~~rpl~V~~~~~~~~~~~~~~k~i~k~~~~~~kere~~~rf~~~g~~e~e~~~r~k~l~e~e 319 (503)
.|.+|+..|+++.+.++..++|+.|.|....++.++.+.+ ...+.+.+.+++..+++|+.+++|+++|+++|+.+.+++
T Consensus 84 ~a~~a~rr~~~~g~~~~~~~~p~~VeP~eq~~d~~G~~~k-~~~~~~~~~~e~~~p~r~a~~g~fe~e~~~~~k~l~~me 162 (275)
T KOG0115|consen 84 NARKAARRCREGGFGGTTGGRPVGVEPMEQPDDNDGGPEK-GGGGGPSGPKEREQPPRFAQQGSFEVEYGSRWKMLGGME 162 (275)
T ss_pred hHHHHHHHhccCccccCCCCCccCCChhhccCCCCcchhh-cCCCCCCCCccccCCchhccccccccccCcccccccccc
Confidence 9999999999999999999999999999999999999999 566788999999999999999999999999999999988
Q ss_pred ----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy93 320 ----------------------------EHETEMLRKELAQREIDRERQKAEWEMKERQAEELKRRDEELMKKH 365 (503)
Q Consensus 320 ----------------------------e~e~e~~Ree~~~rE~~rEr~r~E~E~~eRq~ee~r~reeE~~r~r 365 (503)
+.+..+.++.+++++.+..|..+.|.++.+...+-..++++...++
T Consensus 163 kq~qd~v~~n~kea~~klE~~me~arghe~q~~l~rq~lmrrqeelrrme~l~nqe~qkr~~~~~~eee~r~r~ 236 (275)
T KOG0115|consen 163 KQGQDQVDRNIKEAQDKLEAPMEKARGHECQLMLGRQPLMRREEELRRMEELHNQEAKKRKEINLREEEERLRR 236 (275)
T ss_pred ccCCcccccccchhhhccccccccccCccceeeecCCCcccccHHHHHHHHHhhHHHHHhhhhhhhHHHHHHHH
Confidence 3334566777777777666666667776655555555555444433
No 24
>KOG0127|consensus
Probab=99.84 E-value=3.1e-20 Score=190.21 Aligned_cols=162 Identities=26% Similarity=0.427 Sum_probs=143.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC-----CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc-
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI- 186 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~-----kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~- 186 (503)
.-+|+|.|||+.+...+|+.+|+.||.|..|.|++. .|||||.|....+|.+|++.+|+..|.|++|-|.||.+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 457999999999999999999999999999999854 48999999999999999999999999999999999810
Q ss_pred --------------------------------------------------------------------------------
Q psy93 187 -------------------------------------------------------------------------------- 186 (503)
Q Consensus 187 -------------------------------------------------------------------------------- 186 (503)
T Consensus 197 d~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~ 276 (678)
T KOG0127|consen 197 DTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKES 276 (678)
T ss_pred ccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcc
Confidence
Q ss_pred ---------------ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhh-
Q psy93 187 ---------------NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCA- 249 (503)
Q Consensus 187 ---------------~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln- 249 (503)
..+|||.|||.++++++|...|++||.|.++.|+.+ .++.++|.|||.|.+..+|..||...+
T Consensus 277 ~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Asp 356 (678)
T KOG0127|consen 277 DKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASP 356 (678)
T ss_pred cchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCc
Confidence 147999999999999999999999999999999888 689999999999999999999999873
Q ss_pred ---CCeeeecCCCCeEEeecCCccccccCC
Q psy93 250 ---EGCFFLTQSLRPVIVEPLELTDEIDGL 276 (503)
Q Consensus 250 ---~g~~~~~~~~rpl~V~~~~~~~~~~~~ 276 (503)
.+.+++ .+|.|.|.++...++....
T Consensus 357 a~e~g~~ll--~GR~Lkv~~Av~RkeA~dm 384 (678)
T KOG0127|consen 357 ASEDGSVLL--DGRLLKVTLAVTRKEAADM 384 (678)
T ss_pred cCCCceEEE--eccEEeeeeccchHHHHHH
Confidence 343443 7999999998877654333
No 25
>KOG0145|consensus
Probab=99.83 E-value=6.1e-20 Score=172.84 Aligned_cols=154 Identities=26% Similarity=0.366 Sum_probs=136.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEe------cCCCceEEeeCCHHHHHHHHHHhCCccccC--ceEEEEe
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFIN------KEKMFGFIRMDYKHNADKAKAKLDGHVLKG--RSLKIRF 183 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~------~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g--~~l~V~~ 183 (503)
...+|||++||..+|..+|..+|++||.|..-+|. -++|.+||.|+...+|+.||..|||..-.| .+|.|+|
T Consensus 126 k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKF 205 (360)
T KOG0145|consen 126 KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKF 205 (360)
T ss_pred cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEe
Confidence 45689999999999999999999999988655543 358999999999999999999999997776 5899998
Q ss_pred ccc---------------------------------------------------------------------ccceeccC
Q psy93 184 API---------------------------------------------------------------------NAAIKVKN 194 (503)
Q Consensus 184 a~~---------------------------------------------------------------------~~~L~V~n 194 (503)
+.. ..+|||-|
T Consensus 206 annPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYN 285 (360)
T KOG0145|consen 206 ANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYN 285 (360)
T ss_pred cCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEe
Confidence 830 35899999
Q ss_pred cccccCHHHHHHHhccCCCeeeeEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeecCCc
Q psy93 195 LTSCVTNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLEL 269 (503)
Q Consensus 195 Lp~~~tee~L~~~Fs~~G~V~~~~v~~d~-~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~~~~ 269 (503)
|.++.++..|..+|..||.|.+++|++|. +.+.|||+||++.+.++|..||..|| +.-+ ..|.+.|.+...
T Consensus 286 Lspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLN-Gy~l---g~rvLQVsFKtn 357 (360)
T KOG0145|consen 286 LSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLN-GYRL---GDRVLQVSFKTN 357 (360)
T ss_pred cCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhc-Cccc---cceEEEEEEecC
Confidence 99999999999999999999999999994 68999999999999999999999997 7665 688888887543
No 26
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.82 E-value=2.1e-19 Score=192.17 Aligned_cols=151 Identities=23% Similarity=0.411 Sum_probs=127.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEe------cCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc-
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFIN------KEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP- 185 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~------~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~- 185 (503)
.++|||+|||+++|+++|+++|+.||.|..|.|+ ++++||||+|.+.++|.+|+..||+..|.|++|.|.|+.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 5899999999999999999999999999999987 347899999999999999999999999999999999931
Q ss_pred --------------------------------------------------------------------------------
Q psy93 186 -------------------------------------------------------------------------------- 185 (503)
Q Consensus 186 -------------------------------------------------------------------------------- 185 (503)
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence
Q ss_pred ---------------cccceeccCcccccC----------HHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHH
Q psy93 186 ---------------INAAIKVKNLTSCVT----------NELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPA 240 (503)
Q Consensus 186 ---------------~~~~L~V~nLp~~~t----------ee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~ 240 (503)
++.+|+|.||....+ .++|++.|++||.|+.|.|... .+.|++||+|.+.++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~---~~~G~~fV~F~~~e~ 422 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTK---NSAGKIYLKFSSVDA 422 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCC---CCceeEEEEECCHHH
Confidence 012455566533222 3679999999999999988643 347899999999999
Q ss_pred HHHHHHHhhCCeeeecCCCCeEEeecCCcc
Q psy93 241 AAQALRRCAEGCFFLTQSLRPVIVEPLELT 270 (503)
Q Consensus 241 A~kAl~~ln~g~~~~~~~~rpl~V~~~~~~ 270 (503)
|.+|+..|| +.++ .+++|.+.++...
T Consensus 423 A~~A~~~ln-Gr~f---~gr~i~~~~~~~~ 448 (457)
T TIGR01622 423 ALAAFQALN-GRYF---GGKMITAAFVVND 448 (457)
T ss_pred HHHHHHHhc-Cccc---CCeEEEEEEEcHH
Confidence 999999997 6666 7999999887544
No 27
>KOG0110|consensus
Probab=99.80 E-value=1.8e-19 Score=190.17 Aligned_cols=155 Identities=23% Similarity=0.363 Sum_probs=139.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC---------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEe
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKE---------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRF 183 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~---------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~ 183 (503)
.|+|||.||++++|.++|..+|..+|.|.+|.|.+. .|||||+|.++++|+.|+..|+|+.|+|+.|.|.+
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 345999999999999999999999999999988643 39999999999999999999999999999999999
Q ss_pred ccc---------------ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHH
Q psy93 184 API---------------NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRR 247 (503)
Q Consensus 184 a~~---------------~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ 247 (503)
++. .++|+|.|||...+-.+|+.+|..||.|.+|.|+.. ..+.++|||||+|-++.+|..|+.+
T Consensus 595 S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~a 674 (725)
T KOG0110|consen 595 SENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDA 674 (725)
T ss_pred ccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHh
Confidence 871 358999999999999999999999999999999877 4566799999999999999999999
Q ss_pred hhCCeeeecCCCCeEEeecCCccc
Q psy93 248 CAEGCFFLTQSLRPVIVEPLELTD 271 (503)
Q Consensus 248 ln~g~~~~~~~~rpl~V~~~~~~~ 271 (503)
|. .+.+ -+|.++++|++...
T Consensus 675 l~-STHl---yGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 675 LG-STHL---YGRRLVLEWAKSDN 694 (725)
T ss_pred hc-ccce---echhhheehhccch
Confidence 97 5555 38999999986653
No 28
>KOG0124|consensus
Probab=99.80 E-value=1.6e-19 Score=176.90 Aligned_cols=138 Identities=22% Similarity=0.429 Sum_probs=127.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEE------ecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFI------NKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i------~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
-.|+|||+.|.+.+.++.|+..|.+||+|++|.+ .++|+||||+|+-++.|+.|++.||+..+.|+.|+|....
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 3589999999999999999999999999999998 3679999999999999999999999999999999997653
Q ss_pred c-----------------ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCC-CCceeEEEEEeCCHHHHHHHHHH
Q psy93 186 I-----------------NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDER-GNSKCEGIVEFARKPAAAQALRR 247 (503)
Q Consensus 186 ~-----------------~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~-g~skg~gfV~F~s~e~A~kAl~~ 247 (503)
+ -+.|||..+.++++++||+.+|+.||+|.+|.+.++++ +.++||+||+|.+..+...|+..
T Consensus 192 NmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAias 271 (544)
T KOG0124|consen 192 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 271 (544)
T ss_pred CCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhh
Confidence 2 35899999999999999999999999999999999864 46799999999999999999988
Q ss_pred hh
Q psy93 248 CA 249 (503)
Q Consensus 248 ln 249 (503)
||
T Consensus 272 MN 273 (544)
T KOG0124|consen 272 MN 273 (544)
T ss_pred cc
Confidence 87
No 29
>KOG0105|consensus
Probab=99.79 E-value=1e-18 Score=157.23 Aligned_cols=137 Identities=29% Similarity=0.421 Sum_probs=124.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC---CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc--
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE---KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI-- 186 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~---kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~-- 186 (503)
.+++|||+|||.+|.+.+|.+||.+||.|..|.+... .+||||+|+++-+|+.||..-+|..++|+.|+|+++..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr 84 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGR 84 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCC
Confidence 4689999999999999999999999999999988533 57999999999999999999999999999999999841
Q ss_pred ------------------------------ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeC
Q psy93 187 ------------------------------NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFA 236 (503)
Q Consensus 187 ------------------------------~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~ 236 (503)
...|.|..||++-++++|++...+-|.|..+.|.+| ++++|+|.
T Consensus 85 ~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~GvV~~~ 158 (241)
T KOG0105|consen 85 SSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GVGVVEYL 158 (241)
T ss_pred cccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------cceeeeee
Confidence 347999999999999999999999999999999887 48999999
Q ss_pred CHHHHHHHHHHhhCCeee
Q psy93 237 RKPAAAQALRRCAEGCFF 254 (503)
Q Consensus 237 s~e~A~kAl~~ln~g~~~ 254 (503)
..++.+-|+.+|++.++.
T Consensus 159 r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 159 RKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred ehhhHHHHHHhhcccccc
Confidence 999999999999865544
No 30
>KOG0148|consensus
Probab=99.76 E-value=1.7e-18 Score=164.34 Aligned_cols=160 Identities=24% Similarity=0.326 Sum_probs=129.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc-------
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP------- 185 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~------- 185 (503)
-.||||+||+.+|||+.|..||+++|+|++++|+.+ .|+|.|+.
T Consensus 6 prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-----------------------------e~~v~wa~~p~nQsk 56 (321)
T KOG0148|consen 6 PRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-----------------------------ELKVNWATAPGNQSK 56 (321)
T ss_pred CceEEeeccChhhHHHHHHHHHHhccccccceeehh-----------------------------hhccccccCcccCCC
Confidence 358999999999999999999999999999998744 23333331
Q ss_pred c----ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCC
Q psy93 186 I----NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLR 260 (503)
Q Consensus 186 ~----~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~r 260 (503)
+ .-.+||..|...++.++|++.|.+||+|.+++|++| .++++|||+||.|.++++|+.||..|| +.++ ..|
T Consensus 57 ~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~Mn-GqWl---G~R 132 (321)
T KOG0148|consen 57 PTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMN-GQWL---GRR 132 (321)
T ss_pred CccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhC-Ceee---ccc
Confidence 1 125899999999999999999999999999999999 699999999999999999999999997 8877 688
Q ss_pred eEEeecCCccccccC---------------CcccccCCCCchhhhhhccCcccCCCCCcc
Q psy93 261 PVIVEPLELTDEIDG---------------LSERTINKKTPEFYKQRQVGPRFATVNSFE 305 (503)
Q Consensus 261 pl~V~~~~~~~~~~~---------------~~~k~i~k~~~~~~kere~~~rf~~~g~~e 305 (503)
.|...|+..+....+ .+......++.....+.++...|+++|++-
T Consensus 133 ~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~ 192 (321)
T KOG0148|consen 133 TIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQ 192 (321)
T ss_pred eeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcce
Confidence 899988876542211 112233445555667888888999988873
No 31
>KOG0146|consensus
Probab=99.75 E-value=9.3e-18 Score=158.75 Aligned_cols=170 Identities=24% Similarity=0.421 Sum_probs=140.5
Q ss_pred CCCCCCCCCCCccccCcCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec-----CCCceEEeeCCHHHHHHHHHH
Q psy93 94 PTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINK-----EKMFGFIRMDYKHNADKAKAK 168 (503)
Q Consensus 94 ~~~~~p~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~-----~kg~aFV~F~~~e~A~~Ai~~ 168 (503)
.++.+.|.+++ ..-....+|||+-|...-+|+|++.+|..||.|.+|.+.+ +||||||.|.+..+|..||..
T Consensus 3 rpiqvkpadse---srg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~a 79 (371)
T KOG0146|consen 3 RPIQVKPADSE---SRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINA 79 (371)
T ss_pred CCccccccccc---cCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHH
Confidence 34555555542 1122456899999999999999999999999999999964 599999999999999999999
Q ss_pred hCCc-cccC--ceEEEEecc------------------------------------------------------------
Q psy93 169 LDGH-VLKG--RSLKIRFAP------------------------------------------------------------ 185 (503)
Q Consensus 169 l~g~-~l~g--~~l~V~~a~------------------------------------------------------------ 185 (503)
|++. .+.| ..|.|++++
T Consensus 80 LHgSqTmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~ 159 (371)
T KOG0146|consen 80 LHGSQTMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFA 159 (371)
T ss_pred hcccccCCCCccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhH
Confidence 9998 5554 678888872
Q ss_pred --------------------------------------------------------------------------------
Q psy93 186 -------------------------------------------------------------------------------- 185 (503)
Q Consensus 186 -------------------------------------------------------------------------------- 185 (503)
T Consensus 160 ~~~mQ~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~v 239 (371)
T KOG0146|consen 160 AAQMQQMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTV 239 (371)
T ss_pred HHHHHHHHHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccc
Confidence
Q ss_pred --------------------------------------------cccceeccCcccccCHHHHHHHhccCCCeeeeEEEe
Q psy93 186 --------------------------------------------INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIV 221 (503)
Q Consensus 186 --------------------------------------------~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~ 221 (503)
..|+|||-.||....+.+|..+|-.||.|++.+|..
T Consensus 240 a~~lq~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFv 319 (371)
T KOG0146|consen 240 ADPLQQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFV 319 (371)
T ss_pred cchhhhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeee
Confidence 037899999999999999999999999999999999
Q ss_pred C-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeecCCcc
Q psy93 222 D-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELT 270 (503)
Q Consensus 222 d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~~~~~ 270 (503)
| .++.||+|+||.|+++.+|..||..|| +..+ .-+.+.|....++
T Consensus 320 DRATNQSKCFGFVSfDNp~SaQaAIqAMN-GFQI---GMKRLKVQLKRPk 365 (371)
T KOG0146|consen 320 DRATNQSKCFGFVSFDNPASAQAAIQAMN-GFQI---GMKRLKVQLKRPK 365 (371)
T ss_pred hhccccccceeeEecCCchhHHHHHHHhc-chhh---hhhhhhhhhcCcc
Confidence 9 689999999999999999999999998 5544 2334455444444
No 32
>KOG0123|consensus
Probab=99.72 E-value=5.5e-17 Score=167.32 Aligned_cols=149 Identities=25% Similarity=0.412 Sum_probs=133.5
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCCeEEEEEec----CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc-----
Q psy93 116 LYLGNIGGDITENDIIELFKPYGETQELFINK----EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI----- 186 (503)
Q Consensus 116 l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~----~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~----- 186 (503)
|||.||+++++..+|.++|+.||+|++|++.. +++| ||+|++.+.|.+||+.|||..+.++.|.|.....
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~ 157 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEERE 157 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhc
Confidence 99999999999999999999999999999975 4789 9999999999999999999999999999966532
Q ss_pred ---------ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecC
Q psy93 187 ---------NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQ 257 (503)
Q Consensus 187 ---------~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~ 257 (503)
-+.++|.|++.+++++.|.++|+.||.|.++.++.+..+.+++|+||.|++.++|.+|+..|+ +...
T Consensus 158 ~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~-~~~~--- 233 (369)
T KOG0123|consen 158 APLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLN-GKIF--- 233 (369)
T ss_pred ccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhcc-CCcC---
Confidence 357899999999999999999999999999999999988899999999999999999999997 5444
Q ss_pred CCCeEEeecCCc
Q psy93 258 SLRPVIVEPLEL 269 (503)
Q Consensus 258 ~~rpl~V~~~~~ 269 (503)
....+.|..+..
T Consensus 234 ~~~~~~V~~aqk 245 (369)
T KOG0123|consen 234 GDKELYVGRAQK 245 (369)
T ss_pred Cccceeeccccc
Confidence 345566655544
No 33
>KOG0144|consensus
Probab=99.67 E-value=1.5e-16 Score=159.45 Aligned_cols=74 Identities=26% Similarity=0.556 Sum_probs=68.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec-----CCCceEEeeCCHHHHHHHHHHhCCc-cccC--ceEEEE
Q psy93 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINK-----EKMFGFIRMDYKHNADKAKAKLDGH-VLKG--RSLKIR 182 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~-----~kg~aFV~F~~~e~A~~Ai~~l~g~-~l~g--~~l~V~ 182 (503)
....+|||+-|+..+||.+|+++|++||.|++|.|.+ ++|||||+|.+.+.|..||+.||++ .+.| .+|.|+
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 4467899999999999999999999999999999975 5899999999999999999999999 6665 689999
Q ss_pred ec
Q psy93 183 FA 184 (503)
Q Consensus 183 ~a 184 (503)
|+
T Consensus 202 FA 203 (510)
T KOG0144|consen 202 FA 203 (510)
T ss_pred ec
Confidence 98
No 34
>KOG4205|consensus
Probab=99.65 E-value=3.7e-16 Score=156.19 Aligned_cols=156 Identities=21% Similarity=0.308 Sum_probs=134.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec------CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINK------EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~------~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
..|+|||++|+.+++++.|++.|..||+|..|.+++ +++|+||+|++++.+..++.. .-..|+++.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 568999999999999999999999999999999975 478999999999998888753 4557889999888775
Q ss_pred c------------ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCe
Q psy93 186 I------------NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGC 252 (503)
Q Consensus 186 ~------------~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~ 252 (503)
+ ..+|||+.||.+++++++++.|.+||.|..+.++.| .+..+++|+||.|.+.+++.+++..- -+
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~--f~ 161 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQK--FH 161 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccc--ee
Confidence 4 348999999999999999999999999999999888 57889999999999999999987642 33
Q ss_pred eeecCCCCeEEeecCCccccc
Q psy93 253 FFLTQSLRPVIVEPLELTDEI 273 (503)
Q Consensus 253 ~~~~~~~rpl~V~~~~~~~~~ 273 (503)
. .+++.|.|.-+.+++..
T Consensus 162 ~---~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 162 D---FNGKKVEVKRAIPKEVM 179 (311)
T ss_pred e---ecCceeeEeeccchhhc
Confidence 3 37889999888877653
No 35
>KOG0110|consensus
Probab=99.65 E-value=8.4e-16 Score=162.72 Aligned_cols=190 Identities=21% Similarity=0.219 Sum_probs=159.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc-----
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI----- 186 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~----- 186 (503)
..+.|+|+|||..+..++|..+|..||+|..|.|++.-.-|+|.|.++.+|.+|+..|..+.+...+|.+.|++.
T Consensus 384 s~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dvf~~ 463 (725)
T KOG0110|consen 384 SDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDVFTE 463 (725)
T ss_pred hcceeeeccCccccccHHHHHHhhcccccceeecCcccceeeeeecCccchHHHHHHhchhhhccCccccccChhhhccC
Confidence 457899999999999999999999999999997774444699999999999999999999999999998888730
Q ss_pred ---------------------------------------------------ccceeccCcccccCHHHHHHHhccCCCee
Q psy93 187 ---------------------------------------------------NAAIKVKNLTSCVTNELLELAFGVFGDIE 215 (503)
Q Consensus 187 ---------------------------------------------------~~~L~V~nLp~~~tee~L~~~Fs~~G~V~ 215 (503)
.++|||+||+.+++.++|..+|..+|.|.
T Consensus 464 ~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~Vl 543 (725)
T KOG0110|consen 464 DPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVL 543 (725)
T ss_pred CccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhcCeEE
Confidence 13499999999999999999999999999
Q ss_pred eeEEEeCCCC----CceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeecCC--------ccccccCCcccccCC
Q psy93 216 RAIVIVDERG----NSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLE--------LTDEIDGLSERTINK 283 (503)
Q Consensus 216 ~~~v~~d~~g----~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~~~--------~~~~~~~~~~k~i~k 283 (503)
++.|....+. .|.|||||+|.+.++|..|+..|+ ++.+ .++.|.|.... .....+....+++++
T Consensus 544 S~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lq-gtvl---dGH~l~lk~S~~k~~~~~gK~~~~kk~~tKIlVR 619 (725)
T KOG0110|consen 544 SIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQ-GTVL---DGHKLELKISENKPASTVGKKKSKKKKGTKILVR 619 (725)
T ss_pred EEEEeccccccccccccceeEEEecCHHHHHHHHHHhc-Ccee---cCceEEEEeccCccccccccccccccccceeeee
Confidence 9988766433 356999999999999999999997 7777 78888887766 222222334578888
Q ss_pred CCchhhhhhccCcccCCCCCcc
Q psy93 284 KTPEFYKQRQVGPRFATVNSFE 305 (503)
Q Consensus 284 ~~~~~~kere~~~rf~~~g~~e 305 (503)
++|-....++....|..+|.+-
T Consensus 620 NipFeAt~rEVr~LF~aFGqlk 641 (725)
T KOG0110|consen 620 NIPFEATKREVRKLFTAFGQLK 641 (725)
T ss_pred ccchHHHHHHHHHHHhccccee
Confidence 8998888888888888887664
No 36
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.63 E-value=7.1e-15 Score=158.90 Aligned_cols=73 Identities=25% Similarity=0.462 Sum_probs=68.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec------CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEec
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINK------EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~------~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a 184 (503)
..++|||+|||+++++++|+++|+.||.|.+|.|.+ ++|||||+|.+.++|.+||..||+..|.|+.|+|.++
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 346899999999999999999999999999999964 4789999999999999999999999999999999775
No 37
>KOG4661|consensus
Probab=99.61 E-value=4.4e-14 Score=145.53 Aligned_cols=77 Identities=21% Similarity=0.364 Sum_probs=70.9
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEe
Q psy93 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRF 183 (503)
Q Consensus 110 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~ 183 (503)
.+...+|||.+|+..+...+|+.||++||+|+-.+|+.+ +||+||+|.+.++|.+||..|+.++|+|+.|.|+.
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 455678999999999999999999999999999998754 68999999999999999999999999999999998
Q ss_pred ccc
Q psy93 184 API 186 (503)
Q Consensus 184 a~~ 186 (503)
++.
T Consensus 482 aKN 484 (940)
T KOG4661|consen 482 AKN 484 (940)
T ss_pred ccc
Confidence 864
No 38
>KOG0147|consensus
Probab=99.58 E-value=2e-15 Score=156.06 Aligned_cols=151 Identities=23% Similarity=0.313 Sum_probs=133.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec------CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINK------EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~------~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
...+||+--|+..++..+|.+||+.+|+|..|.|+. +||.|||+|.+.+.+..|| .|.|..+.|.+|.|....
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSE 256 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecccH
Confidence 456899999999999999999999999999999974 4899999999999999999 599999999999997652
Q ss_pred --------------------cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCC-CCCceeEEEEEeCCHHHHHHH
Q psy93 186 --------------------INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQA 244 (503)
Q Consensus 186 --------------------~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~-~g~skg~gfV~F~s~e~A~kA 244 (503)
+-..|||+||..+++++.|+.+|+.||.|..|.+..|. +|.++||+||+|.+.++|.+|
T Consensus 257 aeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a 336 (549)
T KOG0147|consen 257 AEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKA 336 (549)
T ss_pred HHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHH
Confidence 11238999999999999999999999999999999995 999999999999999999999
Q ss_pred HHHhhCCeeeecCCCCeEEeecC
Q psy93 245 LRRCAEGCFFLTQSLRPVIVEPL 267 (503)
Q Consensus 245 l~~ln~g~~~~~~~~rpl~V~~~ 267 (503)
+..|| +..+ -++++.|...
T Consensus 337 ~e~ln-gfel---AGr~ikV~~v 355 (549)
T KOG0147|consen 337 LEQLN-GFEL---AGRLIKVSVV 355 (549)
T ss_pred HHHhc-ccee---cCceEEEEEe
Confidence 99998 5444 6777777553
No 39
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.58 E-value=1.4e-14 Score=130.64 Aligned_cols=76 Identities=20% Similarity=0.428 Sum_probs=70.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec------CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEec
Q psy93 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINK------EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~------~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a 184 (503)
..+++|||+|||+++|+++|+++|++||.|.+|.|+. +++||||+|.+.++|++||+.||+..|.+++|+|.|+
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 3467899999999999999999999999999999974 4799999999999999999999999999999999998
Q ss_pred cc
Q psy93 185 PI 186 (503)
Q Consensus 185 ~~ 186 (503)
..
T Consensus 112 ~~ 113 (144)
T PLN03134 112 ND 113 (144)
T ss_pred Cc
Confidence 64
No 40
>KOG4206|consensus
Probab=99.55 E-value=8.2e-14 Score=130.35 Aligned_cols=148 Identities=22% Similarity=0.319 Sum_probs=125.5
Q ss_pred CcEEEEcCCCCCCCHHHHHH----hhccCCCeEEEEEe---cCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 113 NCRLYLGNIGGDITENDIIE----LFKPYGETQELFIN---KEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~----~F~~~G~V~~v~i~---~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
+.||||.||+..+..++|+. ||+.||.|..|... +.+|-|||.|.+.+.|..|+..|+|..+.|++++|.+|+
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~ 88 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAK 88 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheeccc
Confidence 34899999999999999888 99999999999875 458999999999999999999999999999999998883
Q ss_pred c--------------------------------------------------------ccceeccCcccccCHHHHHHHhc
Q psy93 186 I--------------------------------------------------------NAAIKVKNLTSCVTNELLELAFG 209 (503)
Q Consensus 186 ~--------------------------------------------------------~~~L~V~nLp~~~tee~L~~~Fs 209 (503)
. ...||+.|||..++.+.|..+|.
T Consensus 89 s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~ 168 (221)
T KOG4206|consen 89 SDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFE 168 (221)
T ss_pred CccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHHh
Confidence 1 23588999999999999999999
Q ss_pred cCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeecC
Q psy93 210 VFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPL 267 (503)
Q Consensus 210 ~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~~ 267 (503)
+|.-...+.++... ++.|||+|.+...|..|...+. +..+ + +..++.+.++
T Consensus 169 qf~g~keir~i~~~----~~iAfve~~~d~~a~~a~~~lq-~~~i-t-~~~~m~i~~a 219 (221)
T KOG4206|consen 169 QFPGFKEIRLIPPR----SGIAFVEFLSDRQASAAQQALQ-GFKI-T-KKNTMQITFA 219 (221)
T ss_pred hCcccceeEeccCC----CceeEEecchhhhhHHHhhhhc-ccee-c-cCceEEeccc
Confidence 99988888887653 5699999999999999999986 4333 2 2455555544
No 41
>KOG4212|consensus
Probab=99.52 E-value=2.5e-13 Score=136.48 Aligned_cols=149 Identities=24% Similarity=0.317 Sum_probs=130.2
Q ss_pred cEEEEcCCCCCCCHHHHHHhhc-cCCCeEEEEEe-----cCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc-
Q psy93 114 CRLYLGNIGGDITENDIIELFK-PYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI- 186 (503)
Q Consensus 114 ~~l~V~nLp~~~te~~L~~~F~-~~G~V~~v~i~-----~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~- 186 (503)
..|||+|||+++.+.+|++||. +.|+|+.|.+. +.++||.|+|+++|.+++|++.||...+.|++|.|+-.+.
T Consensus 45 R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d~ 124 (608)
T KOG4212|consen 45 RSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHDE 124 (608)
T ss_pred ceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCch
Confidence 4599999999999999999996 66899999885 5689999999999999999999999999999999965410
Q ss_pred --------------------------------------------------------------------------------
Q psy93 187 -------------------------------------------------------------------------------- 186 (503)
Q Consensus 187 -------------------------------------------------------------------------------- 186 (503)
T Consensus 125 q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~Fl 204 (608)
T KOG4212|consen 125 QRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASFL 204 (608)
T ss_pred hhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhhh
Confidence
Q ss_pred ----------ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeec
Q psy93 187 ----------NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLT 256 (503)
Q Consensus 187 ----------~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~ 256 (503)
..++||.||...+..+.|++.|.-.|+|..+.+-.|+.+.+++|+.|+|+.+-.|..||..|+.+..+
T Consensus 205 r~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~-- 282 (608)
T KOG4212|consen 205 RSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLF-- 282 (608)
T ss_pred hhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCc--
Confidence 13688999999999999999999999999999999999999999999999999999999999743322
Q ss_pred CCCCeEEeec
Q psy93 257 QSLRPVIVEP 266 (503)
Q Consensus 257 ~~~rpl~V~~ 266 (503)
.++.++..
T Consensus 283 --~~~~~~Rl 290 (608)
T KOG4212|consen 283 --DRRMTVRL 290 (608)
T ss_pred --cccceeec
Confidence 55655554
No 42
>KOG0147|consensus
Probab=99.52 E-value=6.7e-14 Score=144.88 Aligned_cols=148 Identities=29% Similarity=0.413 Sum_probs=120.7
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec------CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc---
Q psy93 115 RLYLGNIGGDITENDIIELFKPYGETQELFINK------EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP--- 185 (503)
Q Consensus 115 ~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~------~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~--- 185 (503)
+|||+||.+++++++|+.+|++||.|..|.+.+ +|||+||+|.+.++|.+|+..|||.+|.|+.|+|..-.
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 399999999999999999999999999998864 48999999999999999999999999999999985431
Q ss_pred --------------------------------------------------------------------------------
Q psy93 186 -------------------------------------------------------------------------------- 185 (503)
Q Consensus 186 -------------------------------------------------------------------------------- 185 (503)
T Consensus 360 ~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~ 439 (549)
T KOG0147|consen 360 DTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAF 439 (549)
T ss_pred ccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCcccccccc
Confidence
Q ss_pred --cccceeccCccc--ccC--------HHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCee
Q psy93 186 --INAAIKVKNLTS--CVT--------NELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCF 253 (503)
Q Consensus 186 --~~~~L~V~nLp~--~~t--------ee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~ 253 (503)
++.|+.++|+=. ..| .++|.+.+.+||+|..|.|.++ +-|+.||.|.+.+.|..|+..|+ +.+
T Consensus 440 ~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n----s~g~VYvrc~s~~~A~~a~~alh-grW 514 (549)
T KOG0147|consen 440 DIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN----SAGCVYVRCPSAEAAGTAVKALH-GRW 514 (549)
T ss_pred CCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC----CCceEEEecCcHHHHHHHHHHHh-hhh
Confidence 012444555421 111 1678888999999998877654 24899999999999999999997 776
Q ss_pred eecCCCCeEEeecCCcc
Q psy93 254 FLTQSLRPVIVEPLELT 270 (503)
Q Consensus 254 ~~~~~~rpl~V~~~~~~ 270 (503)
| .++.|+..++...
T Consensus 515 F---~gr~Ita~~~~~~ 528 (549)
T KOG0147|consen 515 F---AGRMITAKYLPLE 528 (549)
T ss_pred h---ccceeEEEEeehh
Confidence 6 6888888776544
No 43
>KOG1548|consensus
Probab=99.51 E-value=4.4e-13 Score=131.67 Aligned_cols=154 Identities=19% Similarity=0.246 Sum_probs=126.2
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHhhccCCCeE--------EEEEecC-----CCceEEeeCCHHHHHHHHHHhCCccccC
Q psy93 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQ--------ELFINKE-----KMFGFIRMDYKHNADKAKAKLDGHVLKG 176 (503)
Q Consensus 110 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~--------~v~i~~~-----kg~aFV~F~~~e~A~~Ai~~l~g~~l~g 176 (503)
...++.|||+|||.++|.+++.++|++||.|. .|+|.++ ||-|+|.|-..+++..||..|++..|.|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 44578899999999999999999999999886 3566433 7899999999999999999999999999
Q ss_pred ceEEEEecc--------------------------------------------cccceeccCccc----ccC-------H
Q psy93 177 RSLKIRFAP--------------------------------------------INAAIKVKNLTS----CVT-------N 201 (503)
Q Consensus 177 ~~l~V~~a~--------------------------------------------~~~~L~V~nLp~----~~t-------e 201 (503)
+.|+|..|. ..++|.|+|+-. ..+ .
T Consensus 211 ~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlk 290 (382)
T KOG1548|consen 211 KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLK 290 (382)
T ss_pred cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHH
Confidence 999998873 135788888631 122 2
Q ss_pred HHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeecCCcc
Q psy93 202 ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELT 270 (503)
Q Consensus 202 e~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~~~~~ 270 (503)
++|.+-+++||.|.+|.|.-. .+.|.+.|.|.+.+.|..||..|+ |.++ .+|.|+....+-.
T Consensus 291 edl~eec~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~-GR~f---dgRql~A~i~DG~ 352 (382)
T KOG1548|consen 291 EDLTEECEKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCIQTMD-GRWF---DGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHHHHhCCcceEEEecc---CCCceeEEEeCChHHHHHHHHHhc-Ceee---cceEEEEEEeCCc
Confidence 567778999999999877643 347899999999999999999997 7777 6888888765433
No 44
>KOG0106|consensus
Probab=99.50 E-value=2.6e-14 Score=134.91 Aligned_cols=138 Identities=27% Similarity=0.367 Sum_probs=120.7
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc-------
Q psy93 114 CRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI------- 186 (503)
Q Consensus 114 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~------- 186 (503)
..|||++||+.+.+.+|..||..||.|..|.+. .+|+||+|.+.-+|..||..||+.+|.+-.+.|+|+..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~ 79 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRGR 79 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--cccceeccCchhhhhcccchhcCceecceeeeeecccccccccCC
Confidence 369999999999999999999999999999884 68999999999999999999999999998899988751
Q ss_pred -------------------ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHH
Q psy93 187 -------------------NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRR 247 (503)
Q Consensus 187 -------------------~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ 247 (503)
.+.|+|.+++..+.+.+|.+.|..+|.+....+. .+++||+|++.++|.+|+..
T Consensus 80 ~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~-------~~~~~v~Fs~~~da~ra~~~ 152 (216)
T KOG0106|consen 80 PRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR-------RNFAFVEFSEQEDAKRALEK 152 (216)
T ss_pred CCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh-------ccccceeehhhhhhhhcchh
Confidence 2468889999999999999999999999655442 55999999999999999999
Q ss_pred hhCCeeeecCCCCeEEe
Q psy93 248 CAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 248 ln~g~~~~~~~~rpl~V 264 (503)
|++ ..+ .++.|.+
T Consensus 153 l~~-~~~---~~~~l~~ 165 (216)
T KOG0106|consen 153 LDG-KKL---NGRRISV 165 (216)
T ss_pred ccc-hhh---cCceeee
Confidence 974 433 4777777
No 45
>KOG0107|consensus
Probab=99.50 E-value=4.5e-14 Score=126.65 Aligned_cols=75 Identities=23% Similarity=0.550 Sum_probs=70.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC-CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI 186 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~-kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~ 186 (503)
..|+|||+||+..+++.||..+|..||+|.+|+|..+ .+||||+|+++-||..|+..|||+.|.|..|+|+++.-
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 4689999999999999999999999999999999754 68999999999999999999999999999999998853
No 46
>KOG1457|consensus
Probab=99.45 E-value=7.8e-13 Score=122.78 Aligned_cols=138 Identities=17% Similarity=0.278 Sum_probs=114.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEe-cC------CCceEEeeCCHHHHHHHHHHhCCcccc---CceEEEE
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFIN-KE------KMFGFIRMDYKHNADKAKAKLDGHVLK---GRSLKIR 182 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~-~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~---g~~l~V~ 182 (503)
-+||||.+||.++...+|..||..|--...+.|. .+ +.+|||+|.+..+|..|+..|||..|+ +..|+|+
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 5789999999999999999999999766666553 22 369999999999999999999999887 6889998
Q ss_pred eccc----------------------------------------------------------------------------
Q psy93 183 FAPI---------------------------------------------------------------------------- 186 (503)
Q Consensus 183 ~a~~---------------------------------------------------------------------------- 186 (503)
+++.
T Consensus 114 lAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~a 193 (284)
T KOG1457|consen 114 LAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPSA 193 (284)
T ss_pred ehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCcc
Confidence 8730
Q ss_pred ----------------ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhC
Q psy93 187 ----------------NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAE 250 (503)
Q Consensus 187 ----------------~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~ 250 (503)
..+|||.||.+++++++|+.+|+.|--....+|... .| .+.+||+|++.+.|..|+..|.
T Consensus 194 ~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~-~g--~~vaf~~~~~~~~at~am~~lq- 269 (284)
T KOG1457|consen 194 NAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR-GG--MPVAFADFEEIEQATDAMNHLQ- 269 (284)
T ss_pred cchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC-CC--cceEeecHHHHHHHHHHHHHhh-
Confidence 137999999999999999999999987666655432 22 5689999999999999999996
Q ss_pred Ceee
Q psy93 251 GCFF 254 (503)
Q Consensus 251 g~~~ 254 (503)
+..+
T Consensus 270 g~~~ 273 (284)
T KOG1457|consen 270 GNLL 273 (284)
T ss_pred ccee
Confidence 5443
No 47
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.44 E-value=1.7e-13 Score=107.03 Aligned_cols=65 Identities=28% Similarity=0.694 Sum_probs=61.6
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC-----CCceEEeeCCHHHHHHHHHHhCCccccCceEE
Q psy93 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLK 180 (503)
Q Consensus 116 l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~-----kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~ 180 (503)
|||+|||+++|+++|+++|+.||.|..+.+..+ ++||||+|.+.++|++|++.|++..+.+++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999763 68999999999999999999999999999885
No 48
>KOG0121|consensus
Probab=99.44 E-value=1.3e-13 Score=117.58 Aligned_cols=77 Identities=25% Similarity=0.503 Sum_probs=70.4
Q ss_pred CcCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEE
Q psy93 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIR 182 (503)
Q Consensus 109 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~ 182 (503)
....+|||||+||++.++|+.|.+||+++|+|..|.|.-+ -|||||+|-+.++|..|++.++++.|+.++|+|.
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 3446799999999999999999999999999999998533 4799999999999999999999999999999999
Q ss_pred ecc
Q psy93 183 FAP 185 (503)
Q Consensus 183 ~a~ 185 (503)
|..
T Consensus 112 ~D~ 114 (153)
T KOG0121|consen 112 WDA 114 (153)
T ss_pred ccc
Confidence 864
No 49
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.38 E-value=2e-12 Score=116.62 Aligned_cols=82 Identities=30% Similarity=0.381 Sum_probs=74.0
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEE
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVI 263 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~ 263 (503)
..+++|||.|||..+++++|+++|++||.|.+|.|+.| .++.+++||||+|.+.++|.+|++.|| +..+ .+++|.
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~ln-g~~i---~Gr~l~ 107 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMD-GKEL---NGRHIR 107 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcC-CCEE---CCEEEE
Confidence 34678999999999999999999999999999999988 588999999999999999999999997 6655 689999
Q ss_pred eecCCcc
Q psy93 264 VEPLELT 270 (503)
Q Consensus 264 V~~~~~~ 270 (503)
|.++...
T Consensus 108 V~~a~~~ 114 (144)
T PLN03134 108 VNPANDR 114 (144)
T ss_pred EEeCCcC
Confidence 9987654
No 50
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.37 E-value=9.2e-13 Score=135.31 Aligned_cols=116 Identities=16% Similarity=0.165 Sum_probs=98.9
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
..++|||.|||.++++++|+++|+.||.|++|+|+.| .++++++||||+|.+.++|.+||..|| +..+ .+++|.|
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~Ln-G~~l---~gr~i~V 181 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLN-GITV---RNKRLKV 181 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcC-CCcc---CCceeee
Confidence 4679999999999999999999999999999999998 588999999999999999999999997 5555 5889999
Q ss_pred ecCCccccccCCcccccCCCCchhhhhhccCcccCCCCCcch
Q psy93 265 EPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEF 306 (503)
Q Consensus 265 ~~~~~~~~~~~~~~k~i~k~~~~~~kere~~~rf~~~g~~e~ 306 (503)
.++.+.... ....++++.+++...+++++...|..++.+..
T Consensus 182 ~~a~p~~~~-~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~ 222 (346)
T TIGR01659 182 SYARPGGES-IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQ 222 (346)
T ss_pred ecccccccc-cccceeEEeCCCCcccHHHHHHHHHhcCCEEE
Confidence 887654322 22346777888888899999999999987753
No 51
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.35 E-value=2.8e-12 Score=124.25 Aligned_cols=72 Identities=22% Similarity=0.301 Sum_probs=67.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC---CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKE---KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~---kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
.++|||+|||+.+|+++|+++|+.||+|.+|.|+.+ ++||||+|.++++|..||. |++..|.|+.|.|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 468999999999999999999999999999999764 6899999999999999995 99999999999999885
No 52
>KOG1456|consensus
Probab=99.35 E-value=9.3e-11 Score=116.21 Aligned_cols=154 Identities=18% Similarity=0.184 Sum_probs=126.3
Q ss_pred CCcEEEEcCCCC-CCCHHHHHHhhccCCCeEEEEEecCC-CceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc----
Q psy93 112 NNCRLYLGNIGG-DITENDIIELFKPYGETQELFINKEK-MFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP---- 185 (503)
Q Consensus 112 ~~~~l~V~nLp~-~~te~~L~~~F~~~G~V~~v~i~~~k-g~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~---- 185 (503)
+.+.+.|.+|.. .++.+.|..+|..||.|..|++++.| +.|+|++.+..+.++|+..||+..+.|.+|.|.+++
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v 365 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFV 365 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeecccccc
Confidence 567899999975 47889999999999999999998875 799999999999999999999999999999998873
Q ss_pred ---------------------------------------cccceeccCcccccCHHHHHHHhccCCC-eeeeEEEeCCCC
Q psy93 186 ---------------------------------------INAAIKVKNLTSCVTNELLELAFGVFGD-IERAIVIVDERG 225 (503)
Q Consensus 186 ---------------------------------------~~~~L~V~nLp~~~tee~L~~~Fs~~G~-V~~~~v~~d~~g 225 (503)
|++.|+.-|.|..+|++.|.++|..... .++++|..-.+-
T Consensus 366 ~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~kse 445 (494)
T KOG1456|consen 366 SPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLKSE 445 (494)
T ss_pred ccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeeccccc
Confidence 3567888999999999999999987764 344555544332
Q ss_pred CceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeec
Q psy93 226 NSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEP 266 (503)
Q Consensus 226 ~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~ 266 (503)
+ ...++++|++.++|..||..||+-.+......-|.++++
T Consensus 446 r-SssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKl 485 (494)
T KOG1456|consen 446 R-SSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKL 485 (494)
T ss_pred c-cccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeee
Confidence 3 347899999999999999999966555444455666555
No 53
>KOG4211|consensus
Probab=99.34 E-value=1.5e-11 Score=126.03 Aligned_cols=134 Identities=19% Similarity=0.283 Sum_probs=113.6
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec----CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc----
Q psy93 114 CRLYLGNIGGDITENDIIELFKPYGETQELFINK----EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP---- 185 (503)
Q Consensus 114 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~----~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~---- 185 (503)
--|-+.+||+++|++||.+||+.| .|.++.+.+ ..|-|||+|.+.+++++|++ .|...+..+-|.|-.+.
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~e~ 88 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGAEA 88 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCccc
Confidence 357889999999999999999999 466666653 46899999999999999997 58888888888886552
Q ss_pred -------------cccceeccCcccccCHHHHHHHhccCCCeee-eEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhh
Q psy93 186 -------------INAAIKVKNLTSCVTNELLELAFGVFGDIER-AIVIVDERGNSKCEGIVEFARKPAAAQALRRCA 249 (503)
Q Consensus 186 -------------~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~-~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln 249 (503)
+...|.+..||..+|+++|.++|+..-.|.. +.++.+..+++.+.|||.|++.+.|++||....
T Consensus 89 d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhr 166 (510)
T KOG4211|consen 89 DWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHR 166 (510)
T ss_pred cccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHHH
Confidence 1346888999999999999999998877766 446677888999999999999999999998743
No 54
>KOG0125|consensus
Probab=99.34 E-value=2.9e-12 Score=125.14 Aligned_cols=75 Identities=31% Similarity=0.520 Sum_probs=70.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec----CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINK----EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI 186 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~----~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~ 186 (503)
..++|+|+|||+...+-||+.+|.+||+|.+|.|+- +|||+||+|++++||++|-.+|||+.|.|++|.|+.+..
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 346899999999999999999999999999999973 599999999999999999999999999999999998864
No 55
>KOG4661|consensus
Probab=99.33 E-value=1.1e-10 Score=120.84 Aligned_cols=79 Identities=19% Similarity=0.271 Sum_probs=69.2
Q ss_pred ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEee
Q psy93 187 NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVE 265 (503)
Q Consensus 187 ~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~-~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~ 265 (503)
..+|||.+|+..+...+|+.+|++||+|+-++|+++. +.-.++|+||++.+.++|.+||..|+ .+.| .++.|.|+
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLH-rTEL---HGrmISVE 480 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLH-RTEL---HGRMISVE 480 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhh-hhhh---cceeeeee
Confidence 3589999999999999999999999999999999983 45568999999999999999999996 7666 68888887
Q ss_pred cCCc
Q psy93 266 PLEL 269 (503)
Q Consensus 266 ~~~~ 269 (503)
.++.
T Consensus 481 kaKN 484 (940)
T KOG4661|consen 481 KAKN 484 (940)
T ss_pred eccc
Confidence 6543
No 56
>KOG1190|consensus
Probab=99.32 E-value=1.7e-11 Score=122.75 Aligned_cols=149 Identities=23% Similarity=0.300 Sum_probs=123.6
Q ss_pred CcEEEEcCCC-CCCCHHHHHHhhccCCCeEEEEEecC-CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc-----
Q psy93 113 NCRLYLGNIG-GDITENDIIELFKPYGETQELFINKE-KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP----- 185 (503)
Q Consensus 113 ~~~l~V~nLp-~~~te~~L~~~F~~~G~V~~v~i~~~-kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~----- 185 (503)
++.|.|.||. ..||.+-|..+|+-||.|..|+|..+ +--|+|.|.+...|.-|+..|+|..|+|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 5789999995 56899999999999999999999765 4589999999999999999999999999999998884
Q ss_pred ------------------------------------cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCcee
Q psy93 186 ------------------------------------INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229 (503)
Q Consensus 186 ------------------------------------~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg 229 (503)
++.+|++.|+|.++++++|+.+|..-|-......... +.+.
T Consensus 377 lp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~---kd~k 453 (492)
T KOG1190|consen 377 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ---KDRK 453 (492)
T ss_pred CCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecC---CCcc
Confidence 2457899999999999999999999997766544332 2256
Q ss_pred EEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeecC
Q psy93 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPL 267 (503)
Q Consensus 230 ~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~~ 267 (503)
++++.+.+.+.|..|+-.++ .+.+. ....+.|.+.
T Consensus 454 mal~q~~sveeA~~ali~~h-nh~lg--en~hlRvSFS 488 (492)
T KOG1190|consen 454 MALPQLESVEEAIQALIDLH-NHYLG--ENHHLRVSFS 488 (492)
T ss_pred eeecccCChhHhhhhccccc-cccCC--CCceEEEEee
Confidence 99999999999999998885 44332 2334566554
No 57
>KOG0122|consensus
Probab=99.31 E-value=4.2e-12 Score=119.62 Aligned_cols=76 Identities=24% Similarity=0.563 Sum_probs=71.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
..++|-|.|||.++++++|.+||.+||.|..|.|.++ ||||||.|.+.++|.+||..|||.-++.-.|+|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 4678999999999999999999999999999999754 7999999999999999999999999999999999998
Q ss_pred cc
Q psy93 186 IN 187 (503)
Q Consensus 186 ~~ 187 (503)
|.
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 75
No 58
>KOG0114|consensus
Probab=99.31 E-value=8.5e-12 Score=102.74 Aligned_cols=98 Identities=26% Similarity=0.372 Sum_probs=78.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec---CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecccccc
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINK---EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAA 189 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~---~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~~~~ 189 (503)
+.-|||.|||+++|.+++.++|.+||+|..|.|.- .+|.|||.|++..+|.+|++.|+|..+.++.|.|-+..+...
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~~ 97 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPEDA 97 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHHH
Confidence 45799999999999999999999999999999963 479999999999999999999999999999999988766432
Q ss_pred eeccCcccccCHHHHHHHhccCC
Q psy93 190 IKVKNLTSCVTNELLELAFGVFG 212 (503)
Q Consensus 190 L~V~nLp~~~tee~L~~~Fs~~G 212 (503)
..+ .......++|..+-.+||
T Consensus 98 ~~~--~~~~k~~~~l~~~~~ky~ 118 (124)
T KOG0114|consen 98 FKL--MDSRKAREELSILKEKYG 118 (124)
T ss_pred HHH--HHhHHhhhHHHHHHHHhc
Confidence 211 122333444555544554
No 59
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.31 E-value=4.6e-12 Score=99.48 Aligned_cols=65 Identities=26% Similarity=0.575 Sum_probs=59.4
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC-----CCceEEeeCCHHHHHHHHHHhCCccccCceEE
Q psy93 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLK 180 (503)
Q Consensus 116 l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~-----kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~ 180 (503)
|||+|||+++++++|.++|+.||.|..+.+..+ +++|||+|.+.++|.+|+..+++..|.|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999999876 58999999999999999999999999999874
No 60
>KOG1190|consensus
Probab=99.27 E-value=9.5e-11 Score=117.48 Aligned_cols=150 Identities=23% Similarity=0.359 Sum_probs=125.9
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCCeEEEEE-ecCCCc-eEEeeCCHHHHHHHHHHhCCccccC--ceEEEEecc----
Q psy93 114 CRLYLGNIGGDITENDIIELFKPYGETQELFI-NKEKMF-GFIRMDYKHNADKAKAKLDGHVLKG--RSLKIRFAP---- 185 (503)
Q Consensus 114 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i-~~~kg~-aFV~F~~~e~A~~Ai~~l~g~~l~g--~~l~V~~a~---- 185 (503)
-+++|.|+-+.||-+-|..+|++||.|..|.. -++.+| |+|.|.+++.|..|...|+|..|.. |.|+|.+++
T Consensus 151 Lr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~L 230 (492)
T KOG1190|consen 151 LRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDL 230 (492)
T ss_pred EEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccc
Confidence 46889999999999999999999999987754 456564 9999999999999999999997773 788887762
Q ss_pred ---------------------------------------------------------------c--ccceeccCcc-ccc
Q psy93 186 ---------------------------------------------------------------I--NAAIKVKNLT-SCV 199 (503)
Q Consensus 186 ---------------------------------------------------------------~--~~~L~V~nLp-~~~ 199 (503)
+ +..|.|.||. ..+
T Consensus 231 nvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~V 310 (492)
T KOG1190|consen 231 NVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAV 310 (492)
T ss_pred eeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhcc
Confidence 0 1457788886 469
Q ss_pred CHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeecCCccc
Q psy93 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTD 271 (503)
Q Consensus 200 tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~~~~~~ 271 (503)
|.+.|..+|..||.|.+|+|+.++ +-.|+|.|.+...|.-|+.+|+ +..+ .+++|.|.+.++.+
T Consensus 311 T~d~LftlFgvYGdVqRVkil~nk----kd~ALIQmsd~~qAqLA~~hL~-g~~l---~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 311 TPDVLFTLFGVYGDVQRVKILYNK----KDNALIQMSDGQQAQLAMEHLE-GHKL---YGKKLRVTLSKHTN 374 (492)
T ss_pred chhHHHHHHhhhcceEEEEeeecC----CcceeeeecchhHHHHHHHHhh-ccee---cCceEEEeeccCcc
Confidence 999999999999999999999874 3479999999999999999997 5555 36889998876653
No 61
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.26 E-value=4.1e-11 Score=116.95 Aligned_cols=110 Identities=33% Similarity=0.514 Sum_probs=97.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc-
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP- 185 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~- 185 (503)
.++|||+|||.++|+++|.++|..||.|..|.|..+ ++||||+|.+.++|..|+..+++..|.+++|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 589999999999999999999999999998888643 6999999999999999999999999999999999842
Q ss_pred -----------------------------cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC
Q psy93 186 -----------------------------INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD 222 (503)
Q Consensus 186 -----------------------------~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d 222 (503)
....+++.+++..++...+...|..++.+..+.+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPS 260 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCC
Confidence 1245778889999999999999999999966655544
No 62
>KOG0124|consensus
Probab=99.25 E-value=6.2e-11 Score=117.04 Aligned_cols=72 Identities=25% Similarity=0.447 Sum_probs=66.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEe------cCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEec
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFIN------KEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~------~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a 184 (503)
-++|||..+.++.+++||+..|+.||+|++|.+. .+|||+||+|.+..+-..||..||-..|.|+.|+|-.+
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 3589999999999999999999999999999995 35899999999999999999999999999999998544
No 63
>smart00362 RRM_2 RNA recognition motif.
Probab=99.25 E-value=2.3e-11 Score=94.11 Aligned_cols=67 Identities=36% Similarity=0.693 Sum_probs=63.2
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCC----CceEEeeCCHHHHHHHHHHhCCccccCceEEE
Q psy93 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKEK----MFGFIRMDYKHNADKAKAKLDGHVLKGRSLKI 181 (503)
Q Consensus 115 ~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k----g~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V 181 (503)
+|||+|||.+++.++|+++|..||+|..+.+..++ ++|||+|.+.++|.+|+..+++..+.++.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 48999999999999999999999999999998765 99999999999999999999999999999887
No 64
>KOG0120|consensus
Probab=99.25 E-value=1.9e-11 Score=128.22 Aligned_cols=156 Identities=20% Similarity=0.280 Sum_probs=124.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec------CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEec
Q psy93 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINK------EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~------~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a 184 (503)
...+.|||++||..+++..+.++...||++....+++ +|+|||.+|.++.....||..|||+.+.++.|.|..+
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 3457899999999999999999999999998877754 4899999999999999999999999999999999877
Q ss_pred cc------------------------------ccceeccCc--ccc-cCH-------HHHHHHhccCCCeeeeEEEeC-C
Q psy93 185 PI------------------------------NAAIKVKNL--TSC-VTN-------ELLELAFGVFGDIERAIVIVD-E 223 (503)
Q Consensus 185 ~~------------------------------~~~L~V~nL--p~~-~te-------e~L~~~Fs~~G~V~~~~v~~d-~ 223 (503)
-. +..|++.|+ |.. .++ ++|+..|++||.|..|.|.++ .
T Consensus 367 ~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~ 446 (500)
T KOG0120|consen 367 IVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYP 446 (500)
T ss_pred hccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCC
Confidence 32 122333332 111 111 456777899999999999877 3
Q ss_pred C---CCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeecCCcc
Q psy93 224 R---GNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELT 270 (503)
Q Consensus 224 ~---g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~~~~~ 270 (503)
+ ....|..||+|.+.+++++|+..|+ |..+ .+|.|+...++..
T Consensus 447 ~~~~~~G~GkVFVefas~ed~qrA~~~L~-GrKF---~nRtVvtsYydeD 492 (500)
T KOG0120|consen 447 DENPVPGTGKVFVEFADTEDSQRAMEELT-GRKF---ANRTVVASYYDED 492 (500)
T ss_pred CCCcCCCcccEEEEecChHHHHHHHHHcc-Ccee---CCcEEEEEecCHH
Confidence 2 2345678999999999999999997 7666 6888888887654
No 65
>PLN03213 repressor of silencing 3; Provisional
Probab=99.24 E-value=1.6e-11 Score=125.14 Aligned_cols=75 Identities=23% Similarity=0.478 Sum_probs=69.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC--CCceEEeeCCH--HHHHHHHHHhCCccccCceEEEEeccc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE--KMFGFIRMDYK--HNADKAKAKLDGHVLKGRSLKIRFAPI 186 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~--kg~aFV~F~~~--e~A~~Ai~~l~g~~l~g~~l~V~~a~~ 186 (503)
...+||||||+++|++++|..+|+.||.|..|.|++. +|||||+|.+. .++.+||..|||..+.|+.|+|..|.+
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 3478999999999999999999999999999999864 78999999987 789999999999999999999999975
No 66
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.23 E-value=4.9e-11 Score=92.98 Aligned_cols=64 Identities=36% Similarity=0.413 Sum_probs=60.1
Q ss_pred eeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeee
Q psy93 190 IKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFF 254 (503)
Q Consensus 190 L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~ 254 (503)
|||+|||..+++++|+++|+.||.|..+.+..+.++.++++|||+|.+.++|.+|+..|+ +..+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~-g~~~ 64 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELN-GKKI 64 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHT-TEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcC-CCEE
Confidence 799999999999999999999999999999998888899999999999999999999997 5655
No 67
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.23 E-value=3.3e-11 Score=115.10 Aligned_cols=73 Identities=15% Similarity=0.208 Sum_probs=67.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC---CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE---KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~---kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
...+|||+||++.+|+++|++||+.||+|.+|.|+++ ++||||+|.++++|..|+ .|+|..|.+++|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 3468999999999999999999999999999999865 579999999999999999 599999999999998754
No 68
>KOG1456|consensus
Probab=99.22 E-value=2.9e-10 Score=112.79 Aligned_cols=152 Identities=14% Similarity=0.172 Sum_probs=120.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhC--CccccCceEEEEecc-----
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLD--GHVLKGRSLKIRFAP----- 185 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~--g~~l~g~~l~V~~a~----- 185 (503)
+-.|.|.+|-..+++.+|.+.++.||+|..|.++..+..|+|+|++.+.|+.|+..-. ...+.|+.-.+.++.
T Consensus 31 spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyStsq~i~ 110 (494)
T KOG1456|consen 31 SPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYSTSQCIE 110 (494)
T ss_pred CceEEEeccccccchhHHHHHHhcCCceEEEEeccccceeeeeeccccchhhheehhccCcccccCchhhcccchhhhhc
Confidence 3469999999999999999999999999999999999999999999999999886433 335567777777663
Q ss_pred --------cccceecc--CcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeee
Q psy93 186 --------INAAIKVK--NLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFL 255 (503)
Q Consensus 186 --------~~~~L~V~--nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~ 255 (503)
++..|.++ |--..+|-+-|..++...|+|..|.|++. ++ -.|.|+|++.+.|++|...||.-.+..
T Consensus 111 R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ng---VQAmVEFdsv~~AqrAk~alNGADIYs 186 (494)
T KOG1456|consen 111 RPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NG---VQAMVEFDSVEVAQRAKAALNGADIYS 186 (494)
T ss_pred cCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-cc---eeeEEeechhHHHHHHHhhcccccccc
Confidence 23344444 43457899999999999999999988876 33 379999999999999999998443331
Q ss_pred cCCCCeEEeecCCcc
Q psy93 256 TQSLRPVIVEPLELT 270 (503)
Q Consensus 256 ~~~~rpl~V~~~~~~ 270 (503)
.-+.+.++.+++.
T Consensus 187 --GCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 187 --GCCTLKIEYAKPT 199 (494)
T ss_pred --cceeEEEEecCcc
Confidence 2345666666553
No 69
>KOG4212|consensus
Probab=99.21 E-value=3.1e-10 Score=114.50 Aligned_cols=71 Identities=25% Similarity=0.259 Sum_probs=61.4
Q ss_pred cceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeec
Q psy93 188 AAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEP 266 (503)
Q Consensus 188 ~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~ 266 (503)
++|+|+|||.+.|++.|++.|..||.|.++.|+. .+++++ +|.|.++++|+.|+..|+ ++.+ +++-|.|..
T Consensus 537 ~qIiirNlP~dfTWqmlrDKfre~G~v~yadime--~GkskG--VVrF~s~edAEra~a~Mn-gs~l---~Gr~I~V~y 607 (608)
T KOG4212|consen 537 CQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME--NGKSKG--VVRFFSPEDAERACALMN-GSRL---DGRNIKVTY 607 (608)
T ss_pred cEEEEecCCccccHHHHHHHHHhccceehhhhhc--cCCccc--eEEecCHHHHHHHHHHhc-cCcc---cCceeeeee
Confidence 5799999999999999999999999999998843 455655 999999999999999997 6666 678787764
No 70
>KOG0132|consensus
Probab=99.21 E-value=8.8e-11 Score=125.75 Aligned_cols=101 Identities=25% Similarity=0.357 Sum_probs=84.5
Q ss_pred CcCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc--
Q psy93 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI-- 186 (503)
Q Consensus 109 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~-- 186 (503)
....++||||+.|+..+++.||..+|+.||.|.+|.++.+++||||++....+|.+|+..|....+..+.|+|.|+-.
T Consensus 417 isV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 417 ISVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKG 496 (894)
T ss_pred eeEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCC
Confidence 344678999999999999999999999999999999999999999999999999999999999999999999999953
Q ss_pred ---------ccceeccCcccccCHHHHHHHhc
Q psy93 187 ---------NAAIKVKNLTSCVTNELLELAFG 209 (503)
Q Consensus 187 ---------~~~L~V~nLp~~~tee~L~~~Fs 209 (503)
...|=|..||...-.++|..++.
T Consensus 497 ~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 497 PKSEYKDYWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred cchhhhhhhhcccCeeEeehHhcCHHHHHhhh
Confidence 12234666776533333554443
No 71
>KOG4207|consensus
Probab=99.19 E-value=2.1e-11 Score=112.18 Aligned_cols=74 Identities=28% Similarity=0.590 Sum_probs=69.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
..++|.|-||.+-|+.++|+.+|++||.|.+|.|+.+ +|||||.|....+|+.|++.|+|.+|+|+.|.|.+|.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 4678999999999999999999999999999999754 7999999999999999999999999999999999884
No 72
>KOG0130|consensus
Probab=99.17 E-value=5.9e-11 Score=102.25 Aligned_cols=74 Identities=22% Similarity=0.463 Sum_probs=68.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEec
Q psy93 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a 184 (503)
...-.|||.++...+|+++|.+.|..||+|+.|.+.-+ ||||+|+|++.+.|++||..||+..|.+++|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 34567999999999999999999999999999998643 799999999999999999999999999999999997
No 73
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.16 E-value=1.2e-10 Score=87.64 Aligned_cols=55 Identities=35% Similarity=0.648 Sum_probs=51.7
Q ss_pred HHHhhccCCCeEEEEEecCC-CceEEeeCCHHHHHHHHHHhCCccccCceEEEEec
Q psy93 130 IIELFKPYGETQELFINKEK-MFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184 (503)
Q Consensus 130 L~~~F~~~G~V~~v~i~~~k-g~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a 184 (503)
|.++|++||+|..|.+.+++ ++|||+|.+.++|.+|+..||+..+.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999999887 99999999999999999999999999999999986
No 74
>KOG0111|consensus
Probab=99.15 E-value=3.4e-11 Score=111.61 Aligned_cols=76 Identities=25% Similarity=0.553 Sum_probs=71.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEe------cCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFIN------KEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~------~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
..++|||++|...|++.-|...|-+||.|+.|.|+ ++++||||+|.-.+||..||+.||+.+|.|+.|+|+++.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 34689999999999999999999999999999996 458999999999999999999999999999999999998
Q ss_pred cc
Q psy93 186 IN 187 (503)
Q Consensus 186 ~~ 187 (503)
|.
T Consensus 89 P~ 90 (298)
T KOG0111|consen 89 PE 90 (298)
T ss_pred Cc
Confidence 74
No 75
>KOG0149|consensus
Probab=99.14 E-value=5.4e-11 Score=111.88 Aligned_cols=73 Identities=18% Similarity=0.419 Sum_probs=64.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEe------cCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFIN------KEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~------~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
.-|+|||++|++.++.++|+.+|++||+|+++.|+ ++|||+||+|.+.++|.+||+. ..-.|+||+-.|+++-
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 45789999999999999999999999999998886 5689999999999999999975 3457899988887763
No 76
>KOG0113|consensus
Probab=99.14 E-value=2.2e-10 Score=110.93 Aligned_cols=74 Identities=19% Similarity=0.383 Sum_probs=69.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec------CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEec
Q psy93 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINK------EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~------~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a 184 (503)
.+-+||||+-|+++++|..|+..|+.||+|+.|.|++ ++|||||+|++.-+...|.+..+|+.|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 3568999999999999999999999999999999974 4899999999999999999999999999999999864
No 77
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.13 E-value=2.2e-10 Score=88.98 Aligned_cols=69 Identities=36% Similarity=0.724 Sum_probs=64.3
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC-----CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEe
Q psy93 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRF 183 (503)
Q Consensus 115 ~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~-----kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~ 183 (503)
+|+|+|||+++++++|+++|..||.|..+.+..+ +++|||+|.+.++|..|+..+++..+.++.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999764 68999999999999999999999999999998864
No 78
>KOG0122|consensus
Probab=99.11 E-value=1.7e-10 Score=108.97 Aligned_cols=81 Identities=30% Similarity=0.315 Sum_probs=72.4
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
..++|.|.||+.++++++|.++|..||.|..+.|.+| .+|.++|||||.|.+.++|.+||..|| +.-+ +.-.|.|
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~Ln-G~gy---d~LILrv 263 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLN-GYGY---DNLILRV 263 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHcc-Cccc---ceEEEEE
Confidence 3568999999999999999999999999999999999 699999999999999999999999998 5332 4567889
Q ss_pred ecCCcc
Q psy93 265 EPLELT 270 (503)
Q Consensus 265 ~~~~~~ 270 (503)
+|..+.
T Consensus 264 EwskP~ 269 (270)
T KOG0122|consen 264 EWSKPS 269 (270)
T ss_pred EecCCC
Confidence 998764
No 79
>KOG0129|consensus
Probab=99.07 E-value=1.9e-09 Score=111.57 Aligned_cols=160 Identities=19% Similarity=0.200 Sum_probs=118.2
Q ss_pred cCcCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEE-EE--E-----ecCCC---ceEEeeCCHHHHHHHHHHhCCc----
Q psy93 108 IKFANNCRLYLGNIGGDITENDIIELFKPYGETQE-LF--I-----NKEKM---FGFIRMDYKHNADKAKAKLDGH---- 172 (503)
Q Consensus 108 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~-v~--i-----~~~kg---~aFV~F~~~e~A~~Ai~~l~g~---- 172 (503)
....-++.||||+||.+++|+.|...|..||.|.- +- . ...+| |+|+.|++..++..-|..+.-.
T Consensus 254 ~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~ 333 (520)
T KOG0129|consen 254 RSPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNY 333 (520)
T ss_pred CccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccce
Confidence 33445688999999999999999999999998742 11 1 12367 9999999988887766554321
Q ss_pred -------cccCceEEEEec---------------ccccceeccCcccccCHHHHHHHhc-cCCCeeeeEEEeC-CCCCce
Q psy93 173 -------VLKGRSLKIRFA---------------PINAAIKVKNLTSCVTNELLELAFG-VFGDIERAIVIVD-ERGNSK 228 (503)
Q Consensus 173 -------~l~g~~l~V~~a---------------~~~~~L~V~nLp~~~tee~L~~~Fs-~~G~V~~~~v~~d-~~g~sk 228 (503)
.+..+.+.|... ++..+|||+.||-.++.++|..+|+ -||.|..+-|-+| +-..++
T Consensus 334 yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPk 413 (520)
T KOG0129|consen 334 YFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPK 413 (520)
T ss_pred EEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCC
Confidence 112222333221 3578999999999999999999999 8999999999998 677889
Q ss_pred eEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeecCC
Q psy93 229 CEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLE 268 (503)
Q Consensus 229 g~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~~~ 268 (503)
|-|-|+|.+..+-.+||.+-- -.+-.+...+.|.|+|+.
T Consensus 414 GaGRVtFsnqqsYi~AIsarF-vql~h~d~~KRVEIkPYv 452 (520)
T KOG0129|consen 414 GAGRVTFSNQQAYIKAISARF-VQLDHTDIDKRVEIKPYV 452 (520)
T ss_pred CcceeeecccHHHHHHHhhhe-EEEeccccceeeeeccee
Confidence 999999999999999998721 011112234556666665
No 80
>smart00360 RRM RNA recognition motif.
Probab=99.05 E-value=5.1e-10 Score=86.07 Aligned_cols=65 Identities=34% Similarity=0.695 Sum_probs=59.8
Q ss_pred EcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEE
Q psy93 118 LGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIR 182 (503)
Q Consensus 118 V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~ 182 (503)
|+|||..+++++|+.+|..||.|..+.+..+ ++||||+|.+.++|..|+..|++..+.++.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6899999999999999999999999998754 5799999999999999999999999999998873
No 81
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.05 E-value=1.2e-09 Score=85.74 Aligned_cols=64 Identities=30% Similarity=0.405 Sum_probs=57.7
Q ss_pred eeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeee
Q psy93 190 IKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFF 254 (503)
Q Consensus 190 L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~ 254 (503)
|+|+|||+.+++++|.++|+.||.|..+.+..+.++.++++|||+|.+.++|..|+..++ +..+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~-~~~~ 64 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLN-GKEI 64 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHT-TEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCC-CcEE
Confidence 689999999999999999999999999999998668899999999999999999999985 6666
No 82
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.04 E-value=7.5e-10 Score=107.50 Aligned_cols=79 Identities=23% Similarity=0.219 Sum_probs=68.9
Q ss_pred ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeec
Q psy93 187 NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEP 266 (503)
Q Consensus 187 ~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~ 266 (503)
.++|||+|||+.+++++|+++|+.||+|.+|.|+.+.. +++||||+|.+.++|..||. || +..+ .+++|.|.+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~All-Ln-G~~l---~gr~V~Vt~ 76 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETALL-LS-GATI---VDQSVTITP 76 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHHH-hc-CCee---CCceEEEEe
Confidence 46899999999999999999999999999999998853 47899999999999999995 76 6655 599999999
Q ss_pred CCcccc
Q psy93 267 LELTDE 272 (503)
Q Consensus 267 ~~~~~~ 272 (503)
....+.
T Consensus 77 a~~~~~ 82 (260)
T PLN03120 77 AEDYQL 82 (260)
T ss_pred ccCCCC
Confidence 765543
No 83
>KOG0126|consensus
Probab=99.04 E-value=3.8e-11 Score=108.48 Aligned_cols=75 Identities=24% Similarity=0.525 Sum_probs=70.2
Q ss_pred cCcCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec------CCCceEEeeCCHHHHHHHHHHhCCccccCceEEE
Q psy93 108 IKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINK------EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKI 181 (503)
Q Consensus 108 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~------~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V 181 (503)
..+.++.-|||+|||+++|+.||.-+|++||+|+.|.+++ ++||||+.|++.-+...|+..|||..|.|+.|+|
T Consensus 30 ~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirV 109 (219)
T KOG0126|consen 30 QEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRV 109 (219)
T ss_pred hhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEe
Confidence 4566788999999999999999999999999999999975 4799999999999999999999999999999999
Q ss_pred E
Q psy93 182 R 182 (503)
Q Consensus 182 ~ 182 (503)
.
T Consensus 110 D 110 (219)
T KOG0126|consen 110 D 110 (219)
T ss_pred e
Confidence 7
No 84
>KOG0121|consensus
Probab=99.00 E-value=6.6e-10 Score=95.10 Aligned_cols=80 Identities=26% Similarity=0.280 Sum_probs=69.9
Q ss_pred ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEee
Q psy93 187 NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVE 265 (503)
Q Consensus 187 ~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~-~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~ 265 (503)
+++|||+||+..++++.|.++|+++|+|..|.+-.|. +..+=|||||+|.+.++|..|+..+| +..+ ..++|.+.
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryis-gtrL---ddr~ir~D 111 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYIS-GTRL---DDRPIRID 111 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhc-cCcc---cccceeee
Confidence 6899999999999999999999999999998876663 45567899999999999999999997 6666 78999998
Q ss_pred cCCcc
Q psy93 266 PLELT 270 (503)
Q Consensus 266 ~~~~~ 270 (503)
|---.
T Consensus 112 ~D~GF 116 (153)
T KOG0121|consen 112 WDAGF 116 (153)
T ss_pred ccccc
Confidence 85443
No 85
>KOG0109|consensus
Probab=99.00 E-value=3.4e-10 Score=109.20 Aligned_cols=97 Identities=24% Similarity=0.348 Sum_probs=78.7
Q ss_pred HHhhcCCCCCCCCCCCCccccCcCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHH
Q psy93 88 IMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKA 167 (503)
Q Consensus 88 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~ 167 (503)
+..+.+.++.--....+.+..+.+.+++|+|+||.+.++..+|+..|.+||+|.+|+|+ |.|+||.|+-.++|..||+
T Consensus 53 irNLhgYtLhg~nInVeaSksKsk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv--kdy~fvh~d~~eda~~air 130 (346)
T KOG0109|consen 53 IRNLHGYTLHGVNINVEASKSKSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV--KDYAFVHFDRAEDAVEAIR 130 (346)
T ss_pred HhhcccceecceEEEEEeccccCCCccccccCCCCccccCHHHhhhhcccCCceeeeee--cceeEEEEeeccchHHHHh
Confidence 33344444443322222233345567899999999999999999999999999999997 6799999999999999999
Q ss_pred HhCCccccCceEEEEeccc
Q psy93 168 KLDGHVLKGRSLKIRFAPI 186 (503)
Q Consensus 168 ~l~g~~l~g~~l~V~~a~~ 186 (503)
.||++++.|++|+|.++..
T Consensus 131 ~l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 131 GLDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred cccccccccceeeeeeecc
Confidence 9999999999999998753
No 86
>KOG0149|consensus
Probab=98.99 E-value=5.6e-10 Score=105.08 Aligned_cols=62 Identities=35% Similarity=0.415 Sum_probs=58.8
Q ss_pred cceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhh
Q psy93 188 AAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCA 249 (503)
Q Consensus 188 ~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln 249 (503)
++|||++|++.+..+.|++.|++||+|+++.|+.| .+++||||+||+|.+.++|.+|+..-|
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~ 75 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN 75 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC
Confidence 68999999999999999999999999999999999 699999999999999999999998754
No 87
>KOG0120|consensus
Probab=98.98 E-value=9.5e-10 Score=115.64 Aligned_cols=153 Identities=28% Similarity=0.399 Sum_probs=130.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccC-----------C-CeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceE
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPY-----------G-ETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSL 179 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~-----------G-~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l 179 (503)
....+||+++|+.++++.+..+|..- | .|..|.+...+.||||+|.+.++|..|+. +++..+.|.++
T Consensus 174 q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~nfa~ie~~s~~~at~~~~-~~~~~f~g~~~ 252 (500)
T KOG0120|consen 174 QARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKNFAFIEFRSISEATEAMA-LDGIIFEGRPL 252 (500)
T ss_pred hhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccccceeEEecCCCchhhhhc-ccchhhCCCCc
Confidence 45679999999999999999998654 3 58889999999999999999999998875 78888888888
Q ss_pred EEEecc-----------------------------cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCcee
Q psy93 180 KIRFAP-----------------------------INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKC 229 (503)
Q Consensus 180 ~V~~a~-----------------------------~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg 229 (503)
++.... ....++|++||..++++.+.++...||.+....++.| .++.+++
T Consensus 253 ~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg 332 (500)
T KOG0120|consen 253 KIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKG 332 (500)
T ss_pred eecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccc
Confidence 774321 1357999999999999999999999999999999988 5789999
Q ss_pred EEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeecCCc
Q psy93 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLEL 269 (503)
Q Consensus 230 ~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~~~~ 269 (503)
|||++|-+......|+..|| ++.+ ..+.++|..+-.
T Consensus 333 ~af~ey~dpsvtd~A~agLn-Gm~l---gd~~lvvq~A~~ 368 (500)
T KOG0120|consen 333 FAFCEYCDPSVTDQAIAGLN-GMQL---GDKKLVVQRAIV 368 (500)
T ss_pred eeeeeeeCCcchhhhhcccc-hhhh---cCceeEeehhhc
Confidence 99999999999999999997 6655 356777766543
No 88
>KOG0125|consensus
Probab=98.97 E-value=9.8e-10 Score=107.68 Aligned_cols=97 Identities=22% Similarity=0.281 Sum_probs=81.9
Q ss_pred hCCccccCceEEEEecc------cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHH
Q psy93 169 LDGHVLKGRSLKIRFAP------INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAA 242 (503)
Q Consensus 169 l~g~~l~g~~l~V~~a~------~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~ 242 (503)
-++....|.++.+..+. ..+.|+|+|||....+-||+.+|.+||+|.+|.|+.++.| ||||+||+|++.++|.
T Consensus 72 ~~~~~t~g~~~~~~~st~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dad 150 (376)
T KOG0125|consen 72 SNGAPTDGQPIQTQPSTNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADAD 150 (376)
T ss_pred cCCCCCCCCccccCCCCcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHH
Confidence 34556667777665543 2568999999999999999999999999999999999766 5999999999999999
Q ss_pred HHHHHhhCCeeeecCCCCeEEeecCCcc
Q psy93 243 QALRRCAEGCFFLTQSLRPVIVEPLELT 270 (503)
Q Consensus 243 kAl~~ln~g~~~~~~~~rpl~V~~~~~~ 270 (503)
+|..+|+ +..+ .+|.|.|..+...
T Consensus 151 RARa~LH-gt~V---EGRkIEVn~ATar 174 (376)
T KOG0125|consen 151 RARAELH-GTVV---EGRKIEVNNATAR 174 (376)
T ss_pred HHHHHhh-ccee---eceEEEEeccchh
Confidence 9999997 6666 5899999877654
No 89
>KOG0415|consensus
Probab=98.95 E-value=4.2e-09 Score=103.99 Aligned_cols=87 Identities=26% Similarity=0.332 Sum_probs=77.1
Q ss_pred EEEecccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCC
Q psy93 180 KIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQS 258 (503)
Q Consensus 180 ~V~~a~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~ 258 (503)
....++|.+.|||-.|.+-+++++|.-+|+.||+|.+|.|++| .+|.+-.||||+|++.+++.+|.-+|+ ..++ .
T Consensus 232 dAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMd-NvLI---D 307 (479)
T KOG0415|consen 232 DADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMD-NVLI---D 307 (479)
T ss_pred ccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhc-ceee---c
Confidence 3456688999999999999999999999999999999999999 799999999999999999999999996 5555 6
Q ss_pred CCeEEeecCCcc
Q psy93 259 LRPVIVEPLELT 270 (503)
Q Consensus 259 ~rpl~V~~~~~~ 270 (503)
.+-|+|.+....
T Consensus 308 DrRIHVDFSQSV 319 (479)
T KOG0415|consen 308 DRRIHVDFSQSV 319 (479)
T ss_pred cceEEeehhhhh
Confidence 888888775443
No 90
>KOG4454|consensus
Probab=98.94 E-value=1.9e-10 Score=106.86 Aligned_cols=133 Identities=23% Similarity=0.250 Sum_probs=113.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC----CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccccc
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINA 188 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~----kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~~~ 188 (503)
..||||.||...|+++.|.++|-+.|+|..|.|.+. ..||||.|.+..++.-|++.+||..+.+.+|.|.+-.-+.
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G~s 88 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCGNS 88 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccccCCC
Confidence 357999999999999999999999999999999753 2399999999999999999999999999999886532211
Q ss_pred ceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHh
Q psy93 189 AIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRC 248 (503)
Q Consensus 189 ~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~l 248 (503)
. .-|...++.+.+...|+.-+.+..+.+.++.++.++.++||++-...+.-.++...
T Consensus 89 h---apld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y 145 (267)
T KOG4454|consen 89 H---APLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLY 145 (267)
T ss_pred c---chhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhh
Confidence 0 11667789999999999999999999999888888999999987777766676654
No 91
>KOG0108|consensus
Probab=98.91 E-value=2.3e-09 Score=112.14 Aligned_cols=73 Identities=25% Similarity=0.482 Sum_probs=69.1
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec------CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc
Q psy93 114 CRLYLGNIGGDITENDIIELFKPYGETQELFINK------EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI 186 (503)
Q Consensus 114 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~------~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~ 186 (503)
+.|||+|||+++++++|..+|+..|.|.+++++- .+|||||+|.+.++|.+|++.||+.++.|++|+|.|+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 6899999999999999999999999999999963 489999999999999999999999999999999999864
No 92
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.91 E-value=4.9e-09 Score=100.32 Aligned_cols=77 Identities=22% Similarity=0.224 Sum_probs=66.2
Q ss_pred ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeec
Q psy93 187 NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEP 266 (503)
Q Consensus 187 ~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~ 266 (503)
..+|+|+||++.+|+++|+++|+.||+|.+|.|+.| +..++||||+|.+.++|..|+ .|+ +..+ .+++|.|.+
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D--~et~gfAfVtF~d~~aaetAl-lLn-Ga~l---~d~~I~It~ 77 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS--GEYACTAYVTFKDAYALETAV-LLS-GATI---VDQRVCITR 77 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC--CCcceEEEEEECCHHHHHHHH-hcC-CCee---CCceEEEEe
Confidence 468999999999999999999999999999999988 345689999999999999999 576 6555 477888887
Q ss_pred CCcc
Q psy93 267 LELT 270 (503)
Q Consensus 267 ~~~~ 270 (503)
....
T Consensus 78 ~~~y 81 (243)
T PLN03121 78 WGQY 81 (243)
T ss_pred Cccc
Confidence 6643
No 93
>smart00362 RRM_2 RNA recognition motif.
Probab=98.90 E-value=7.5e-09 Score=79.78 Aligned_cols=71 Identities=35% Similarity=0.415 Sum_probs=61.7
Q ss_pred ceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 189 AIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 189 ~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
+|+|.|||..++.++|.++|..||.|..+.+..+. +.++++|||+|.+.++|..|+..++ +..+ .++++.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~-~~~~---~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALN-GTKL---GGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhC-CcEE---CCEEEee
Confidence 58999999999999999999999999999988776 6778999999999999999999987 4444 4566554
No 94
>PF08075 NOPS: NOPS (NUC059) domain; InterPro: IPR012975 This domain is found C-terminal to 1 or 2 IPR000504 from INTERPRO domains [] in NONA and PSP1 proteins.; PDB: 3SDE_B.
Probab=98.88 E-value=6.9e-10 Score=79.99 Aligned_cols=52 Identities=62% Similarity=1.117 Sum_probs=38.0
Q ss_pred eEEeecCCccccccCCcccccCCCCchhhhhhccCcccCCCCCcchhhhhhhH
Q psy93 261 PVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWK 313 (503)
Q Consensus 261 pl~V~~~~~~~~~~~~~~k~i~k~~~~~~kere~~~rf~~~g~~e~e~~~r~k 313 (503)
||+|++++..++.|+++++ +.+++++|.++++.+|||+++++||++|++|||
T Consensus 1 PvvVEp~e~~DdedGlpEk-l~~k~~~y~kERe~~PRFA~pgsfE~eyg~RWK 52 (52)
T PF08075_consen 1 PVVVEPLEQLDDEDGLPEK-LIKKNPQYHKEREQGPRFAQPGSFEFEYGMRWK 52 (52)
T ss_dssp B-EEEE---EESSS---GG-GS--SHHHHHHCTS-SEE--TTSHHHHHHHHHH
T ss_pred CceeccCccccccccchHH-HHHHhHHHHHhhhcCCCcCCCCCcchhhccccC
Confidence 6899999999999999999 556899999999999999999999999999997
No 95
>KOG0107|consensus
Probab=98.88 E-value=3e-09 Score=95.87 Aligned_cols=77 Identities=27% Similarity=0.208 Sum_probs=66.5
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEee
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVE 265 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~ 265 (503)
..++|||+||+..+++.+|..+|..||.|..|.|...+ .+||||+|+++.+|..|+..|+ +..+ ++.-+.|+
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP----PGfAFVEFed~RDA~DAvr~LD-G~~~---cG~r~rVE 80 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP----PGFAFVEFEDPRDAEDAVRYLD-GKDI---CGSRIRVE 80 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC----CCceEEeccCcccHHHHHhhcC-Cccc---cCceEEEE
Confidence 36789999999999999999999999999999887753 6799999999999999999997 5544 57778887
Q ss_pred cCCcc
Q psy93 266 PLELT 270 (503)
Q Consensus 266 ~~~~~ 270 (503)
...-.
T Consensus 81 ~S~G~ 85 (195)
T KOG0107|consen 81 LSTGR 85 (195)
T ss_pred eecCC
Confidence 75443
No 96
>KOG0131|consensus
Probab=98.87 E-value=1.9e-09 Score=97.73 Aligned_cols=116 Identities=17% Similarity=0.131 Sum_probs=90.6
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEE
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVI 263 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~ 263 (503)
+...+|||+||++.++++.|+++|-+.|.|.++.+.+| -+....|||||+|.+.++|.-|++.|| ...+ -++||.
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln-~VkL---YgrpIr 82 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILN-MVKL---YGRPIR 82 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHH-HHHh---cCceeE
Confidence 34679999999999999999999999999999999998 466789999999999999999999998 5444 699999
Q ss_pred eecCCccccccCCcccccCCCCchhhhhhccCcccCCCCCc
Q psy93 264 VEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSF 304 (503)
Q Consensus 264 V~~~~~~~~~~~~~~k~i~k~~~~~~kere~~~rf~~~g~~ 304 (503)
|..+...........++.++++.....+..+-..|+.+|.+
T Consensus 83 v~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l 123 (203)
T KOG0131|consen 83 VNKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVL 123 (203)
T ss_pred EEecccccccccccccccccccCcchhHHHHHHHHHhcccc
Confidence 98887443333344455566665555555555555555443
No 97
>KOG0153|consensus
Probab=98.87 E-value=9.1e-09 Score=101.73 Aligned_cols=75 Identities=29% Similarity=0.496 Sum_probs=68.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHH-hCCccccCceEEEEeccc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK-LDGHVLKGRSLKIRFAPI 186 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~-l~g~~l~g~~l~V~~a~~ 186 (503)
..++|||++|-..+++.+|+++|.+||+|.+|.+...+++|||+|.+.++|+.|... ++...|.|+.|+|.|..+
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 467899999988999999999999999999999999999999999999999997765 455588999999999977
No 98
>KOG0126|consensus
Probab=98.87 E-value=3.1e-10 Score=102.66 Aligned_cols=99 Identities=23% Similarity=0.248 Sum_probs=79.9
Q ss_pred HHHHHhCCcccc-CceEEEEec---ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCH
Q psy93 164 KAKAKLDGHVLK-GRSLKIRFA---PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARK 238 (503)
Q Consensus 164 ~Ai~~l~g~~l~-g~~l~V~~a---~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~ 238 (503)
+-|..||..++. |-.-.+.|. +.+.-|||++||..+|+.+|.-+|++||+|+.|.+++| .||+|+||||+.|++.
T Consensus 8 k~i~~lne~Elq~g~~~~~SWH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQ 87 (219)
T KOG0126|consen 8 KNIQKLNERELQLGIADKKSWHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQ 87 (219)
T ss_pred HHHHHhhHHhhccccccccchhhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCc
Confidence 345556655544 222244444 34678999999999999999999999999999999999 6999999999999999
Q ss_pred HHHHHHHHHhhCCeeeecCCCCeEEeec
Q psy93 239 PAAAQALRRCAEGCFFLTQSLRPVIVEP 266 (503)
Q Consensus 239 e~A~kAl~~ln~g~~~~~~~~rpl~V~~ 266 (503)
.+..-|+..|| +..++ +|.|.|..
T Consensus 88 RSTILAVDN~N-Giki~---gRtirVDH 111 (219)
T KOG0126|consen 88 RSTILAVDNLN-GIKIL---GRTIRVDH 111 (219)
T ss_pred cceEEEEeccC-Cceec---ceeEEeee
Confidence 99999999997 76663 66666654
No 99
>KOG4207|consensus
Probab=98.84 E-value=3.2e-09 Score=97.97 Aligned_cols=80 Identities=24% Similarity=0.268 Sum_probs=71.8
Q ss_pred ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEee
Q psy93 187 NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVE 265 (503)
Q Consensus 187 ~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~ 265 (503)
...|.|.||..-++.++|..+|++||.|.+|.|..| -+..+++||||.|.+..+|+.|+++|+ +.++ +++.|.|.
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damD-G~~l---dgRelrVq 88 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMD-GAVL---DGRELRVQ 88 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhc-ceee---ccceeeeh
Confidence 357899999999999999999999999999999999 588899999999999999999999996 7777 68888887
Q ss_pred cCCcc
Q psy93 266 PLELT 270 (503)
Q Consensus 266 ~~~~~ 270 (503)
.+..-
T Consensus 89 ~aryg 93 (256)
T KOG4207|consen 89 MARYG 93 (256)
T ss_pred hhhcC
Confidence 76543
No 100
>KOG0113|consensus
Probab=98.83 E-value=1e-08 Score=99.55 Aligned_cols=79 Identities=20% Similarity=0.273 Sum_probs=72.0
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEE
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVI 263 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~ 263 (503)
+|-++|||.-|+.++++..|+..|+.||.|..|.|+.| .+++++|||||+|++..+...|.+..+ +..+ +++-|+
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~ad-G~~I---dgrri~ 174 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDAD-GIKI---DGRRIL 174 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhcc-Ccee---cCcEEE
Confidence 45689999999999999999999999999999999999 699999999999999999999999986 6666 688888
Q ss_pred eecC
Q psy93 264 VEPL 267 (503)
Q Consensus 264 V~~~ 267 (503)
|..-
T Consensus 175 VDvE 178 (335)
T KOG0113|consen 175 VDVE 178 (335)
T ss_pred EEec
Confidence 8763
No 101
>KOG0146|consensus
Probab=98.82 E-value=5.6e-09 Score=99.67 Aligned_cols=96 Identities=22% Similarity=0.306 Sum_probs=83.4
Q ss_pred CceEEEEeccc------ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhh
Q psy93 176 GRSLKIRFAPI------NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCA 249 (503)
Q Consensus 176 g~~l~V~~a~~------~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln 249 (503)
.++|.|+.++. .++|||+-|...-+|++++.+|..||.|.+|.+++..++.+||++||.|.+..+|..||..|+
T Consensus 2 nrpiqvkpadsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLH 81 (371)
T KOG0146|consen 2 NRPIQVKPADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALH 81 (371)
T ss_pred CCCccccccccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhc
Confidence 46788877753 578999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCeeeecCCCCeEEeecCCcccc
Q psy93 250 EGCFFLTQSLRPVIVEPLELTDE 272 (503)
Q Consensus 250 ~g~~~~~~~~rpl~V~~~~~~~~ 272 (503)
+...+..-...++|++++..++
T Consensus 82 -gSqTmpGASSSLVVK~ADTdkE 103 (371)
T KOG0146|consen 82 -GSQTMPGASSSLVVKFADTDKE 103 (371)
T ss_pred -ccccCCCCccceEEEeccchHH
Confidence 6555555566788888776654
No 102
>KOG0114|consensus
Probab=98.81 E-value=1.4e-08 Score=84.00 Aligned_cols=79 Identities=20% Similarity=0.233 Sum_probs=66.9
Q ss_pred ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeec
Q psy93 187 NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEP 266 (503)
Q Consensus 187 ~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~ 266 (503)
+..|||.|||.++|.+++.++|.+||.|..+.|-..+ ..+|.|||.|++..+|.+|+.+|+ +..+ +++.+.|-.
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k--~TrGTAFVVYedi~dAk~A~dhls-g~n~---~~ryl~vly 91 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK--ETRGTAFVVYEDIFDAKKACDHLS-GYNV---DNRYLVVLY 91 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCcc--CcCceEEEEehHhhhHHHHHHHhc-cccc---CCceEEEEe
Confidence 5679999999999999999999999999999886552 348899999999999999999997 6555 688888866
Q ss_pred CCccc
Q psy93 267 LELTD 271 (503)
Q Consensus 267 ~~~~~ 271 (503)
..+.+
T Consensus 92 yq~~~ 96 (124)
T KOG0114|consen 92 YQPED 96 (124)
T ss_pred cCHHH
Confidence 55443
No 103
>PLN03213 repressor of silencing 3; Provisional
Probab=98.80 E-value=1.2e-08 Score=104.60 Aligned_cols=76 Identities=14% Similarity=0.288 Sum_probs=67.5
Q ss_pred ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCH--HHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 187 NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARK--PAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 187 ~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~--e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
..+|||+||++.+++++|..+|+.||.|..|.|++. +| +|||||+|.+. .++.+||..|| ++.+ .++.|.|
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE-TG--RGFAFVEMssdddaEeeKAISaLN-GAEW---KGR~LKV 82 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT-KG--RSFAYIDFSPSSTNSLTKLFSTYN-GCVW---KGGRLRL 82 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc-cC--CceEEEEecCCcHHHHHHHHHHhc-CCee---cCceeEE
Confidence 467999999999999999999999999999999944 55 89999999987 78999999997 7766 6899999
Q ss_pred ecCCc
Q psy93 265 EPLEL 269 (503)
Q Consensus 265 ~~~~~ 269 (503)
..+.+
T Consensus 83 NKAKP 87 (759)
T PLN03213 83 EKAKE 87 (759)
T ss_pred eeccH
Confidence 87655
No 104
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.79 E-value=4e-08 Score=76.06 Aligned_cols=73 Identities=34% Similarity=0.402 Sum_probs=63.8
Q ss_pred ceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEee
Q psy93 189 AIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVE 265 (503)
Q Consensus 189 ~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~ 265 (503)
+|+|.+||..+++++|.++|..||.|..+.+..+....++++|||+|.+.++|..|+..++ +..+ .++.+.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~-~~~~---~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALN-GKEL---GGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhC-CCeE---CCeEEEEe
Confidence 4789999999999999999999999999999988666778999999999999999999987 5444 46666664
No 105
>smart00360 RRM RNA recognition motif.
Probab=98.78 E-value=3.4e-08 Score=75.74 Aligned_cols=69 Identities=38% Similarity=0.451 Sum_probs=59.7
Q ss_pred ccCcccccCHHHHHHHhccCCCeeeeEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 192 VKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 192 V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~-~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
|.|||..+++++|+++|+.||.|..+.+..+. ++.++++|||+|.+.++|..|+..++ +..+ .++.+.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~-~~~~---~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALN-GKEL---DGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcC-CCee---CCcEEEe
Confidence 67999999999999999999999999998875 57889999999999999999999997 5544 4555554
No 106
>KOG0130|consensus
Probab=98.77 E-value=8.4e-09 Score=89.09 Aligned_cols=77 Identities=23% Similarity=0.239 Sum_probs=69.1
Q ss_pred ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEee
Q psy93 187 NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVE 265 (503)
Q Consensus 187 ~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~ 265 (503)
...|||+++.+..++++|.+.|..||+|.++.+..| .+|-.+||++|+|++.+.|++|+..+| +..++ +..|.|.
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~N-g~~ll---~q~v~VD 147 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALN-GAELL---GQNVSVD 147 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhcc-chhhh---CCceeEE
Confidence 567999999999999999999999999999999888 689999999999999999999999998 55553 6677777
Q ss_pred cC
Q psy93 266 PL 267 (503)
Q Consensus 266 ~~ 267 (503)
|.
T Consensus 148 w~ 149 (170)
T KOG0130|consen 148 WC 149 (170)
T ss_pred EE
Confidence 74
No 107
>KOG0111|consensus
Probab=98.73 E-value=8.7e-09 Score=95.84 Aligned_cols=84 Identities=27% Similarity=0.297 Sum_probs=75.4
Q ss_pred cccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeE
Q psy93 184 APINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPV 262 (503)
Q Consensus 184 a~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl 262 (503)
+..+++|||++|...+++..|...|-.||.|..|.++.| ++.++++|+||+|.-.++|..||..|| ...+ .+|.|
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMn-esEL---~Grti 82 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMN-ESEL---FGRTI 82 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCc-hhhh---cceeE
Confidence 455789999999999999999999999999999999998 788999999999999999999999998 4444 49999
Q ss_pred EeecCCccc
Q psy93 263 IVEPLELTD 271 (503)
Q Consensus 263 ~V~~~~~~~ 271 (503)
.|..+.+..
T Consensus 83 rVN~AkP~k 91 (298)
T KOG0111|consen 83 RVNLAKPEK 91 (298)
T ss_pred EEeecCCcc
Confidence 999876653
No 108
>KOG0415|consensus
Probab=98.72 E-value=1.6e-08 Score=99.96 Aligned_cols=79 Identities=16% Similarity=0.386 Sum_probs=71.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCC------CceEEeeCCHHHHHHHHHHhCCccccCceEEEEec
Q psy93 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEK------MFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k------g~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a 184 (503)
++.+.|||..|.+-+|.++|.-+|+.||+|.+|.|++++ .||||+|++.+++++|.-.|++..|+.+.|.|.|+
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 355689999999999999999999999999999998763 59999999999999999999999999999999998
Q ss_pred ccccc
Q psy93 185 PINAA 189 (503)
Q Consensus 185 ~~~~~ 189 (503)
.+-.+
T Consensus 317 QSVsk 321 (479)
T KOG0415|consen 317 QSVSK 321 (479)
T ss_pred hhhhh
Confidence 76444
No 109
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.69 E-value=5.4e-08 Score=94.80 Aligned_cols=78 Identities=32% Similarity=0.413 Sum_probs=71.9
Q ss_pred ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEee
Q psy93 187 NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVE 265 (503)
Q Consensus 187 ~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~ 265 (503)
..+|||+|||..+++++|.++|..||.|..+.+..+ .++.+++||||+|.+.++|..|+..++ +..+ .++++.|.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~-~~~~---~~~~~~v~ 190 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELN-GKEL---EGRPLRVQ 190 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcC-CCeE---CCceeEee
Confidence 489999999999999999999999999999999998 589999999999999999999999997 5555 68999998
Q ss_pred cCC
Q psy93 266 PLE 268 (503)
Q Consensus 266 ~~~ 268 (503)
+..
T Consensus 191 ~~~ 193 (306)
T COG0724 191 KAQ 193 (306)
T ss_pred ccc
Confidence 864
No 110
>KOG0533|consensus
Probab=98.69 E-value=2.2e-07 Score=90.05 Aligned_cols=76 Identities=21% Similarity=0.423 Sum_probs=67.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEe-----cCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~-----~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
+..++|+|.|||+.|+++||++||..||.+..+.|. ++.|.|-|.|...+||..||+.++++.++|++|.+....
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 345789999999999999999999999988888774 346899999999999999999999999999999988765
Q ss_pred c
Q psy93 186 I 186 (503)
Q Consensus 186 ~ 186 (503)
+
T Consensus 161 ~ 161 (243)
T KOG0533|consen 161 S 161 (243)
T ss_pred C
Confidence 4
No 111
>smart00361 RRM_1 RNA recognition motif.
Probab=98.67 E-value=4.9e-08 Score=76.90 Aligned_cols=55 Identities=24% Similarity=0.430 Sum_probs=48.6
Q ss_pred HHHHHHhhc----cCCCeEEEE-E-e-------cCCCceEEeeCCHHHHHHHHHHhCCccccCceEEE
Q psy93 127 ENDIIELFK----PYGETQELF-I-N-------KEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKI 181 (503)
Q Consensus 127 e~~L~~~F~----~~G~V~~v~-i-~-------~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V 181 (503)
+++|+++|+ .||.|.+|. | + .++|||||+|.+.++|.+|+..|||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578889998 999999885 3 2 23789999999999999999999999999999986
No 112
>KOG0112|consensus
Probab=98.66 E-value=1.3e-08 Score=111.04 Aligned_cols=153 Identities=20% Similarity=0.275 Sum_probs=126.0
Q ss_pred cCcCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC-----CCceEEeeCCHHHHHHHHHHhCCccccCceEEEE
Q psy93 108 IKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIR 182 (503)
Q Consensus 108 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~-----kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~ 182 (503)
.....+.+||++||+..+++.+|+..|..+|.|.+|.|... ..||||.|.+...+-.|+..+.+..|..-.+++.
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 34445789999999999999999999999999999988543 3599999999999999999999988875555555
Q ss_pred ec----ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCC
Q psy93 183 FA----PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQS 258 (503)
Q Consensus 183 ~a----~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~ 258 (503)
+. .+++.++|+.|...+....|...|..||.|..|.+-.. ..|++|.|++...|+.|+..|. +.. ++..
T Consensus 447 lG~~kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-----q~yayi~yes~~~aq~a~~~~r-gap-~G~P 519 (975)
T KOG0112|consen 447 LGQPKSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-----QPYAYIQYESPPAAQAATHDMR-GAP-LGGP 519 (975)
T ss_pred ccccccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-----CcceeeecccCccchhhHHHHh-cCc-CCCC
Confidence 44 46788999999999999999999999999998766443 4599999999999999999985 333 3445
Q ss_pred CCeEEeecC
Q psy93 259 LRPVIVEPL 267 (503)
Q Consensus 259 ~rpl~V~~~ 267 (503)
.+.+.|.++
T Consensus 520 ~~r~rvdla 528 (975)
T KOG0112|consen 520 PRRLRVDLA 528 (975)
T ss_pred Ccccccccc
Confidence 555666554
No 113
>KOG1365|consensus
Probab=98.63 E-value=5.5e-08 Score=97.14 Aligned_cols=150 Identities=17% Similarity=0.220 Sum_probs=108.7
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCC----CeEEEEEe-----cCCCceEEeeCCHHHHHHHHHHhCCccccCceEEE---
Q psy93 114 CRLYLGNIGGDITENDIIELFKPYG----ETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKI--- 181 (503)
Q Consensus 114 ~~l~V~nLp~~~te~~L~~~F~~~G----~V~~v~i~-----~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V--- 181 (503)
-.|-+.+||+++++.++.+||..-= -+..|.++ +..|-|||.|+.+++|+.|+.. |...|.-+-|.+
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFRS 240 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHHH
Confidence 3577889999999999999996322 22333332 2368999999999999999874 222222222211
Q ss_pred ----------------------------------EecccccceeccCcccccCHHHHHHHhccCCCe-ee--eEEEeCCC
Q psy93 182 ----------------------------------RFAPINAAIKVKNLTSCVTNELLELAFGVFGDI-ER--AIVIVDER 224 (503)
Q Consensus 182 ----------------------------------~~a~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V-~~--~~v~~d~~ 224 (503)
-...++.+|.+.+||...+.++|.++|..|-.- .. +.++.+..
T Consensus 241 TaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~q 320 (508)
T KOG1365|consen 241 TAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQ 320 (508)
T ss_pred hHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCC
Confidence 111235689999999999999999999999753 33 67778888
Q ss_pred CCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeecCC
Q psy93 225 GNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLE 268 (503)
Q Consensus 225 g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~~~ 268 (503)
|.+.|.|||+|.+.+.|..|..+++ +++. ..|-|.|-+..
T Consensus 321 GrPSGeAFIqm~nae~a~aaaqk~h-k~~m---k~RYiEvfp~S 360 (508)
T KOG1365|consen 321 GRPSGEAFIQMRNAERARAAAQKCH-KKLM---KSRYIEVFPCS 360 (508)
T ss_pred CCcChhhhhhhhhhHHHHHHHHHHH-Hhhc---ccceEEEeecc
Confidence 9999999999999999999999986 4433 35555555543
No 114
>KOG0108|consensus
Probab=98.60 E-value=7.7e-08 Score=100.81 Aligned_cols=81 Identities=25% Similarity=0.284 Sum_probs=74.9
Q ss_pred cceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeec
Q psy93 188 AAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEP 266 (503)
Q Consensus 188 ~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~ 266 (503)
..|||+|+|.++++++|.++|+..|.|.+++++.| ++|+++||+||+|.+.++|..|+..|| +..+ .++++.|.+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lN-g~~~---~gr~l~v~~ 94 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLN-GAEF---NGRKLRVNY 94 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcC-Cccc---CCceEEeec
Confidence 78999999999999999999999999999999999 699999999999999999999999998 5555 699999999
Q ss_pred CCcccc
Q psy93 267 LELTDE 272 (503)
Q Consensus 267 ~~~~~~ 272 (503)
+...+.
T Consensus 95 ~~~~~~ 100 (435)
T KOG0108|consen 95 ASNRKN 100 (435)
T ss_pred ccccch
Confidence 877654
No 115
>KOG0128|consensus
Probab=98.59 E-value=6e-09 Score=113.28 Aligned_cols=127 Identities=16% Similarity=0.235 Sum_probs=112.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEe------cCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFIN------KEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~------~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
..+++||+||++.+.+.+|...|..++.|..+.+. +-+|+|||.|..+++|.+||...+.+.+.
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g---------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG---------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh----------
Confidence 45789999999999999999999999988776653 23799999999999999999865555444
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhh
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCA 249 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln 249 (503)
+..|+|.|+|+.-|.+.|+.+|+.+|.+.+..++....|+++|.++|.|.+..++..++...+
T Consensus 736 -K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d 798 (881)
T KOG0128|consen 736 -KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVD 798 (881)
T ss_pred -hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccch
Confidence 457899999999999999999999999999998888899999999999999999999988765
No 116
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.55 E-value=2.3e-07 Score=69.50 Aligned_cols=56 Identities=27% Similarity=0.393 Sum_probs=47.5
Q ss_pred HHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeecC
Q psy93 204 LELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPL 267 (503)
Q Consensus 204 L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~~ 267 (503)
|.++|++||+|..+.+..+. +++|||+|.+.++|.+|+..|| +..+ .+++|.|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~-~~~~---~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLN-GRQF---NGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHT-TSEE---TTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhC-CCEE---CCcEEEEEEC
Confidence 67899999999999887763 4799999999999999999997 6655 6889998763
No 117
>smart00361 RRM_1 RNA recognition motif.
Probab=98.53 E-value=3.4e-07 Score=72.06 Aligned_cols=60 Identities=25% Similarity=0.423 Sum_probs=49.2
Q ss_pred HHHHHHHhc----cCCCeeeeE-EEeC-CC--CCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 201 NELLELAFG----VFGDIERAI-VIVD-ER--GNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 201 ee~L~~~Fs----~~G~V~~~~-v~~d-~~--g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
+++|.++|+ .||.|.++. |+.+ .+ +.++||+||+|.+.++|.+|+..|| +..+ .+++|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~-g~~~---~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLN-GRYF---DGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhC-CCEE---CCEEEEe
Confidence 567888888 999999995 5555 34 7899999999999999999999998 5555 4777655
No 118
>KOG4211|consensus
Probab=98.49 E-value=7.8e-07 Score=91.94 Aligned_cols=134 Identities=18% Similarity=0.247 Sum_probs=105.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEE-EEEe-----cCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQE-LFIN-----KEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~-v~i~-----~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
+...|-+.+||+.||++||.+||+..-.|.. |.++ +..+-|||+|++.++|++|+.. |...|.-+-|.|-.+.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSS 180 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehhH
Confidence 3457999999999999999999998866555 3333 3467899999999999999874 4444544544442210
Q ss_pred --------------------------------------------------------------------------------
Q psy93 186 -------------------------------------------------------------------------------- 185 (503)
Q Consensus 186 -------------------------------------------------------------------------------- 185 (503)
T Consensus 181 ~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~ 260 (510)
T KOG4211|consen 181 RAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYP 260 (510)
T ss_pred HHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccC
Confidence
Q ss_pred ------------------c-ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHH
Q psy93 186 ------------------I-NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALR 246 (503)
Q Consensus 186 ------------------~-~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~ 246 (503)
+ ...++...||...++.+|..+|+..-.+ .+.|...++++.++.|+|+|.|.++|..|+.
T Consensus 261 ~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TGEAdveF~t~edav~Ams 339 (510)
T KOG4211|consen 261 VSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATGEADVEFATGEDAVGAMG 339 (510)
T ss_pred CCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCCcceeecccchhhHhhhc
Confidence 0 1356677899999999999999887655 7788888899999999999999999999997
Q ss_pred H
Q psy93 247 R 247 (503)
Q Consensus 247 ~ 247 (503)
+
T Consensus 340 k 340 (510)
T KOG4211|consen 340 K 340 (510)
T ss_pred c
Confidence 6
No 119
>KOG0151|consensus
Probab=98.48 E-value=2.2e-07 Score=99.24 Aligned_cols=74 Identities=23% Similarity=0.483 Sum_probs=68.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEe---------cCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEE
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFIN---------KEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIR 182 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~---------~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~ 182 (503)
.+|+|||+||++.++++.|...|..||+|.+|+|+ +.+.|+||-|-+..||++|++.|++..+....|++-
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 46789999999999999999999999999999996 236799999999999999999999999999999999
Q ss_pred ecc
Q psy93 183 FAP 185 (503)
Q Consensus 183 ~a~ 185 (503)
|++
T Consensus 253 Wgk 255 (877)
T KOG0151|consen 253 WGK 255 (877)
T ss_pred ccc
Confidence 983
No 120
>KOG0226|consensus
Probab=98.48 E-value=7.8e-08 Score=91.55 Aligned_cols=152 Identities=20% Similarity=0.312 Sum_probs=117.3
Q ss_pred EEEEcCCCCCCCHHH-H--HHhhccCCCeEEEEEecC-----CCceEEeeCCHHHHHHHHHHhCCccccCceEEE-----
Q psy93 115 RLYLGNIGGDITEND-I--IELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKI----- 181 (503)
Q Consensus 115 ~l~V~nLp~~~te~~-L--~~~F~~~G~V~~v~i~~~-----kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V----- 181 (503)
..+++++-.++..+- | ...|+.|-.+...++.++ .+++|+.|.....-.++-..-+++.+.-.+|++
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gts 177 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTS 177 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccccc
Confidence 356777766665544 3 567777766655555433 579999999877777776665666666665554
Q ss_pred -------EecccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCee
Q psy93 182 -------RFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCF 253 (503)
Q Consensus 182 -------~~a~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~ 253 (503)
+|......||.+.|...++++.|...|.+|-.....++++| .++++++|+||.|.+..++..|+..|+ +.+
T Consensus 178 wedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~-gky 256 (290)
T KOG0226|consen 178 WEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMN-GKY 256 (290)
T ss_pred cCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhc-ccc
Confidence 34445678999999999999999999999999999999998 599999999999999999999999997 777
Q ss_pred eecCCCCeEEeecCCcc
Q psy93 254 FLTQSLRPVIVEPLELT 270 (503)
Q Consensus 254 ~~~~~~rpl~V~~~~~~ 270 (503)
+ ..+||.+.-..++
T Consensus 257 V---gsrpiklRkS~wk 270 (290)
T KOG0226|consen 257 V---GSRPIKLRKSEWK 270 (290)
T ss_pred c---ccchhHhhhhhHH
Confidence 6 5777766555444
No 121
>KOG0105|consensus
Probab=98.44 E-value=2.5e-07 Score=84.19 Aligned_cols=78 Identities=21% Similarity=0.114 Sum_probs=64.8
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEee
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVE 265 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~ 265 (503)
..+.|||.|||.++.+.+|.++|.+||.|..|.+.... ...+||||+|+++.+|..||..-+ +.-+ .++.|.|+
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~--g~ppfafVeFEd~RDAeDAiygRd-GYdy---dg~rLRVE 78 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP--GPPPFAFVEFEDPRDAEDAIYGRD-GYDY---DGCRLRVE 78 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC--CCCCeeEEEecCccchhhhhhccc-cccc---CcceEEEE
Confidence 35789999999999999999999999999998775432 235699999999999999998875 5444 67888888
Q ss_pred cCCc
Q psy93 266 PLEL 269 (503)
Q Consensus 266 ~~~~ 269 (503)
++-.
T Consensus 79 fprg 82 (241)
T KOG0105|consen 79 FPRG 82 (241)
T ss_pred eccC
Confidence 7644
No 122
>KOG4210|consensus
Probab=98.43 E-value=1.6e-07 Score=93.92 Aligned_cols=154 Identities=20% Similarity=0.177 Sum_probs=118.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEe------cCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFIN------KEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~------~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
..+++||+++...+.+.++..+|..+|.+..+.+. .++++++|.|+..+.+..|+...-...+.+..+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 46789999999999999999999999977666553 458999999999999999987533334444433222211
Q ss_pred ----------------ccccee-ccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHH
Q psy93 186 ----------------INAAIK-VKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRR 247 (503)
Q Consensus 186 ----------------~~~~L~-V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ 247 (503)
+..+++ |.+|+..++.++|+..|..+|.|..+.+..+ .++.+++|++|.|.+...+..++..
T Consensus 167 ~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 167 RRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred cccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc
Confidence 123444 9999999999999999999999999999887 6889999999999999999999885
Q ss_pred hhCCeeeecCCCCeEEeecCCcc
Q psy93 248 CAEGCFFLTQSLRPVIVEPLELT 270 (503)
Q Consensus 248 ln~g~~~~~~~~rpl~V~~~~~~ 270 (503)
.... + .++++.+...+..
T Consensus 247 -~~~~-~---~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 247 -QTRS-I---GGRPLRLEEDEPR 264 (285)
T ss_pred -ccCc-c---cCcccccccCCCC
Confidence 4222 2 3666666655444
No 123
>KOG4208|consensus
Probab=98.39 E-value=7e-07 Score=82.93 Aligned_cols=75 Identities=17% Similarity=0.387 Sum_probs=67.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccC-CCeEEEEEec------CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPY-GETQELFINK------EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~-G~V~~v~i~~------~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
..-+||..||..+.+..|..+|.+| |.|..+.+.+ +||||||+|++++.|.-|.+.||+..|.++.|.|.+-+
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMP 128 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeC
Confidence 4569999999999999999999999 6777777743 58999999999999999999999999999999999887
Q ss_pred cc
Q psy93 186 IN 187 (503)
Q Consensus 186 ~~ 187 (503)
+.
T Consensus 129 pe 130 (214)
T KOG4208|consen 129 PE 130 (214)
T ss_pred ch
Confidence 76
No 124
>KOG4205|consensus
Probab=98.33 E-value=3.6e-07 Score=91.88 Aligned_cols=115 Identities=17% Similarity=0.213 Sum_probs=91.9
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
..++|||++|++.++++.|++.|++||+|..|.+++| .++.+++|+||+|++.+....+|..-. +.+ .++.|-+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~--h~~---dgr~ve~ 79 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNART--HKL---DGRSVEP 79 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccc--ccc---CCccccc
Confidence 4578999999999999999999999999999999999 578999999999999999988887643 222 5777777
Q ss_pred ecCCccccccCC-----cccccCCCCchhhhhhccCcccCCCCCcc
Q psy93 265 EPLELTDEIDGL-----SERTINKKTPEFYKQRQVGPRFATVNSFE 305 (503)
Q Consensus 265 ~~~~~~~~~~~~-----~~k~i~k~~~~~~kere~~~rf~~~g~~e 305 (503)
+.+.+..+.... ..++.+..++....+.++...|.+++.+.
T Consensus 80 k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~ 125 (311)
T KOG4205|consen 80 KRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVA 125 (311)
T ss_pred eeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeE
Confidence 666665543222 33666777888888888889998888543
No 125
>KOG4660|consensus
Probab=98.30 E-value=4.7e-07 Score=94.89 Aligned_cols=131 Identities=20% Similarity=0.205 Sum_probs=94.4
Q ss_pred cCcCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC-CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc-
Q psy93 108 IKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP- 185 (503)
Q Consensus 108 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~-kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~- 185 (503)
...++..+|+|-|||.+|++++|..+|+.||+|..|..-.+ .+.+||+|-+.-+|++|++.|++..|.++.|+.....
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~ 149 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGAR 149 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCccc
Confidence 33456778999999999999999999999999999877544 6899999999999999999999999999888732110
Q ss_pred -----------------------c----ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCH
Q psy93 186 -----------------------I----NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARK 238 (503)
Q Consensus 186 -----------------------~----~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~ 238 (503)
+ ...+++ .|++..+...+...|+.+|.+.. ... +.-...-|+.|.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g-~l~P~~s~~~~~~~~~~~~~~~~-~~~----~~~~hq~~~~~~~~ 223 (549)
T KOG4660|consen 150 RAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFG-MLSPTRSSILLEHISSVDGSSPG-RET----PLLNHQRFVEFADN 223 (549)
T ss_pred ccchhcccchhhhhccchhhcCCCCCCcCCccee-eeccchhhhhhhcchhccCcccc-ccc----cchhhhhhhhhccc
Confidence 0 112222 27888888777777887777654 211 11112445566665
Q ss_pred HHHHHH
Q psy93 239 PAAAQA 244 (503)
Q Consensus 239 e~A~kA 244 (503)
.++..+
T Consensus 224 ~s~a~~ 229 (549)
T KOG4660|consen 224 RSYAFS 229 (549)
T ss_pred cchhhc
Confidence 555333
No 126
>KOG4206|consensus
Probab=98.26 E-value=2.1e-06 Score=80.94 Aligned_cols=81 Identities=22% Similarity=0.311 Sum_probs=67.5
Q ss_pred cccceeccCcccccCHHHHHH----HhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCe
Q psy93 186 INAAIKVKNLTSCVTNELLEL----AFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRP 261 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~----~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rp 261 (503)
+..+|||.||++.+..++|+. +|++||+|..|.... +.+.+|.|||.|.+.+.|..|+..|+ +..+ -+++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k--t~KmRGQA~VvFk~~~~As~A~r~l~-gfpF---ygK~ 81 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK--TPKMRGQAFVVFKETEAASAALRALQ-GFPF---YGKP 81 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC--CCCccCceEEEecChhHHHHHHHHhc-CCcc---cCch
Confidence 344999999999999999887 999999999876664 45779999999999999999999998 5444 3888
Q ss_pred EEeecCCcccc
Q psy93 262 VIVEPLELTDE 272 (503)
Q Consensus 262 l~V~~~~~~~~ 272 (503)
+.+.++....+
T Consensus 82 mriqyA~s~sd 92 (221)
T KOG4206|consen 82 MRIQYAKSDSD 92 (221)
T ss_pred hheecccCccc
Confidence 88888766544
No 127
>KOG2193|consensus
Probab=98.26 E-value=2.6e-07 Score=93.44 Aligned_cols=134 Identities=18% Similarity=0.306 Sum_probs=109.0
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCc-cccCceEEEEeccc----cc
Q psy93 114 CRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGH-VLKGRSLKIRFAPI----NA 188 (503)
Q Consensus 114 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~-~l~g~~l~V~~a~~----~~ 188 (503)
+.||++||.+.++.++|..+|...-.-.+-.+.-..+|+||.+.+...|.+|++.++++ .+.|+++.|..+-+ ++
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqrsr 81 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQRSR 81 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHHhh
Confidence 35899999999999999999987632222222234689999999999999999999998 88899999988754 56
Q ss_pred ceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhh
Q psy93 189 AIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCA 249 (503)
Q Consensus 189 ~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln 249 (503)
.+-|.|+|+...++-|..+...||.|..|..+...+ ..-..-|+|.+.+.+..||.+|+
T Consensus 82 k~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~--etavvnvty~~~~~~~~ai~kl~ 140 (584)
T KOG2193|consen 82 KIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDS--ETAVVNVTYSAQQQHRQAIHKLN 140 (584)
T ss_pred hhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccch--HHHHHHHHHHHHHHHHHHHHhhc
Confidence 799999999999999999999999999997643311 12233467889999999999997
No 128
>KOG0116|consensus
Probab=98.24 E-value=1.4e-06 Score=91.00 Aligned_cols=71 Identities=23% Similarity=0.384 Sum_probs=61.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec------CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEec
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINK------EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~------~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a 184 (503)
..+|||.|||++++.++|+++|..||+|+...|.. ..+||||+|.+.++++.||.+ +-..|.++.|.|+--
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEK 364 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEec
Confidence 45699999999999999999999999999877642 238999999999999999986 566788999999754
No 129
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.22 E-value=5.2e-06 Score=66.47 Aligned_cols=70 Identities=19% Similarity=0.384 Sum_probs=50.1
Q ss_pred cEEEEcCCCCCCCHHH----HHHhhccCC-CeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecccc
Q psy93 114 CRLYLGNIGGDITEND----IIELFKPYG-ETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPIN 187 (503)
Q Consensus 114 ~~l~V~nLp~~~te~~----L~~~F~~~G-~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~~ 187 (503)
+.|||.|||.+.+... |+.|+..|| .|..| ..+.|+|.|.+.+.|.+|.+.|++..+.|..|.|.+.+..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~ 77 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKN 77 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCc
Confidence 4699999999988665 566777887 78777 3689999999999999999999999999999999988654
No 130
>KOG2891|consensus
Probab=98.16 E-value=1e-05 Score=78.14 Aligned_cols=52 Identities=25% Similarity=0.323 Sum_probs=34.6
Q ss_pred ccCHHHHHHHhccCCCeeeeEEEe-CC-----CCCce-----eE---------EEEEeCCHHHHHHHHHHhh
Q psy93 198 CVTNELLELAFGVFGDIERAIVIV-DE-----RGNSK-----CE---------GIVEFARKPAAAQALRRCA 249 (503)
Q Consensus 198 ~~tee~L~~~Fs~~G~V~~~~v~~-d~-----~g~sk-----g~---------gfV~F~s~e~A~kAl~~ln 249 (503)
..+++.|...|..||.|..|.|+. |+ +++.. +| |||.|........|+..|.
T Consensus 172 lpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr 243 (445)
T KOG2891|consen 172 LPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALR 243 (445)
T ss_pred CChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHh
Confidence 357788999999999999988753 32 34332 23 3455555555666676665
No 131
>KOG0132|consensus
Probab=98.16 E-value=4.4e-06 Score=90.47 Aligned_cols=75 Identities=19% Similarity=0.240 Sum_probs=67.0
Q ss_pred ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeec
Q psy93 187 NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEP 266 (503)
Q Consensus 187 ~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~ 266 (503)
+++|||+.|+..+++.+|..+|+.||.|.+|+++.. +++|||++....+|.+|+.+|++-. + ..+.|.+.|
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~-----R~cAfI~M~~RqdA~kalqkl~n~k-v---~~k~Iki~W 491 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP-----RGCAFIKMVRRQDAEKALQKLSNVK-V---ADKTIKIAW 491 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC-----CceeEEEEeehhHHHHHHHHHhccc-c---cceeeEEee
Confidence 689999999999999999999999999999999876 8899999999999999999998333 3 478888899
Q ss_pred CCcc
Q psy93 267 LELT 270 (503)
Q Consensus 267 ~~~~ 270 (503)
+..+
T Consensus 492 a~g~ 495 (894)
T KOG0132|consen 492 AVGK 495 (894)
T ss_pred eccC
Confidence 7655
No 132
>KOG0153|consensus
Probab=98.09 E-value=6.5e-06 Score=81.84 Aligned_cols=75 Identities=15% Similarity=0.126 Sum_probs=66.6
Q ss_pred ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeec
Q psy93 187 NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEP 266 (503)
Q Consensus 187 ~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~ 266 (503)
-.+|||++|.+.+++.+|++.|.+||.|.++.++.. +++|||+|.+..+|++|..++.+..++ ++.-|.|.|
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI---~G~Rl~i~W 299 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVI---NGFRLKIKW 299 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeee---cceEEEEEe
Confidence 468999999999999999999999999999999876 679999999999999999998764444 788899989
Q ss_pred CCc
Q psy93 267 LEL 269 (503)
Q Consensus 267 ~~~ 269 (503)
..+
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 877
No 133
>KOG4307|consensus
Probab=98.05 E-value=5.4e-06 Score=88.60 Aligned_cols=150 Identities=11% Similarity=-0.040 Sum_probs=113.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEE-----ecC-CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKE-KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i-----~~~-kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
+.|.|-+.+++++++..|++++|... .|.++.| ..+ .|.++|.|....++++|+.. |.+.+-.+.+.|..+.
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPG 387 (944)
T ss_pred hhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCC
Confidence 45667788999999999999999643 2322222 233 68999999999999999864 6666667777774331
Q ss_pred ---------------------------------------------cccceeccCcccccCHHHHHHHhccCCCeee-eEE
Q psy93 186 ---------------------------------------------INAAIKVKNLTSCVTNELLELAFGVFGDIER-AIV 219 (503)
Q Consensus 186 ---------------------------------------------~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~-~~v 219 (503)
...+|||..||..+++..+.++|...-.|++ |.|
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 1358999999999999999999998888887 555
Q ss_pred EeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeecC
Q psy93 220 IVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPL 267 (503)
Q Consensus 220 ~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~~ 267 (503)
..-++++-++.|||.|...+++.+|+..- ++.+. ..+.|.|.+.
T Consensus 468 t~~P~~~~~~~afv~F~~~~a~~~a~~~~-~k~y~---G~r~irv~si 511 (944)
T KOG4307|consen 468 TRLPTDLLRPAAFVAFIHPTAPLTASSVK-TKFYP---GHRIIRVDSI 511 (944)
T ss_pred ccCCcccccchhhheeccccccchhhhcc-ccccc---CceEEEeech
Confidence 55578888999999999988888887643 34444 3566666553
No 134
>KOG4676|consensus
Probab=98.04 E-value=2.5e-06 Score=85.73 Aligned_cols=130 Identities=18% Similarity=0.211 Sum_probs=105.4
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC---------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKE---------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 115 ~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~---------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
.|-|.||.+.+|.+.+..||...|+|..+.|..+ ...|||.|.+...+..| ++|..+++-++.|.|....
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~va-QhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVA-QHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHH-hhhccceeeeeeEEEEecC
Confidence 4899999999999999999999999999988643 35899999999888877 5688888888888775441
Q ss_pred c--------------------------------------------------------------ccceeccCcccccCHHH
Q psy93 186 I--------------------------------------------------------------NAAIKVKNLTSCVTNEL 203 (503)
Q Consensus 186 ~--------------------------------------------------------------~~~L~V~nLp~~~tee~ 203 (503)
. ..+++|.+|+..+...+
T Consensus 88 ~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e 167 (479)
T KOG4676|consen 88 DEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPE 167 (479)
T ss_pred CCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchh
Confidence 0 13577888888888899
Q ss_pred HHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHh
Q psy93 204 LELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRC 248 (503)
Q Consensus 204 L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~l 248 (503)
+.++|..+|.|....+... ....+|.|.|....+...|+...
T Consensus 168 ~~e~f~r~Gev~ya~~ask---~~s~~c~~sf~~qts~~halr~~ 209 (479)
T KOG4676|consen 168 SGESFERKGEVSYAHTASK---SRSSSCSHSFRKQTSSKHALRSH 209 (479)
T ss_pred hhhhhhhcchhhhhhhhcc---CCCcchhhhHhhhhhHHHHHHhc
Confidence 9999999999988766543 23457889999888888888874
No 135
>KOG4208|consensus
Probab=98.03 E-value=1.1e-05 Score=75.04 Aligned_cols=80 Identities=18% Similarity=0.184 Sum_probs=65.0
Q ss_pred ccceeccCcccccCHHHHHHHhccC-CCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 187 NAAIKVKNLTSCVTNELLELAFGVF-GDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 187 ~~~L~V~nLp~~~tee~L~~~Fs~~-G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
...++|..+|..+.+..+..+|.+| |.|..+.+.++ .||.|++||||+|++.+.|..|-+.|| ..++ ..+.+.|
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMN-NYLl---~e~lL~c 124 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMN-NYLL---MEHLLEC 124 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhh-hhhh---hhheeee
Confidence 4567899999999999999999999 77777777677 699999999999999999999999998 5444 3555555
Q ss_pred ecCCcc
Q psy93 265 EPLELT 270 (503)
Q Consensus 265 ~~~~~~ 270 (503)
..+.+.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 554443
No 136
>KOG2253|consensus
Probab=98.02 E-value=5.1e-06 Score=88.84 Aligned_cols=69 Identities=16% Similarity=0.148 Sum_probs=62.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEe
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRF 183 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~ 183 (503)
..-+|||+||...+..+-++.+...||.|.+++..+ |+|+.|..+..+..|+..|+-..+.++.|.+..
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 455799999999999999999999999999998765 999999999999999999999999998887765
No 137
>KOG4209|consensus
Probab=98.00 E-value=8e-06 Score=79.29 Aligned_cols=77 Identities=19% Similarity=0.315 Sum_probs=68.0
Q ss_pred cCcCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec------CCCceEEeeCCHHHHHHHHHHhCCccccCceEEE
Q psy93 108 IKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINK------EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKI 181 (503)
Q Consensus 108 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~------~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V 181 (503)
+.....+.|||+|+.+.+|.++|...|+.||.|..|.|.. .|+||||+|.+.+.+..|+. ||+..|.++.|.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 4455667899999999999999999999999998777753 47899999999999999998 9999999999999
Q ss_pred Eecc
Q psy93 182 RFAP 185 (503)
Q Consensus 182 ~~a~ 185 (503)
.+..
T Consensus 175 t~~r 178 (231)
T KOG4209|consen 175 TLKR 178 (231)
T ss_pred eeee
Confidence 7653
No 138
>KOG0533|consensus
Probab=97.98 E-value=1.7e-05 Score=77.00 Aligned_cols=81 Identities=27% Similarity=0.401 Sum_probs=70.7
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEee
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVE 265 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~ 265 (503)
...+|+|.|||..+++++|+++|..|+.+..+.|..++.|.+.+.|-|.|...++|..|+..++ +..+ +++++.+.
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~-gv~l---dG~~mk~~ 157 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYN-GVAL---DGRPMKIE 157 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhc-Cccc---CCceeeeE
Confidence 3467899999999999999999999999999999999999999999999999999999999997 5444 67777666
Q ss_pred cCCcc
Q psy93 266 PLELT 270 (503)
Q Consensus 266 ~~~~~ 270 (503)
.....
T Consensus 158 ~i~~~ 162 (243)
T KOG0533|consen 158 IISSP 162 (243)
T ss_pred EecCc
Confidence 55443
No 139
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.92 E-value=2.2e-05 Score=66.86 Aligned_cols=59 Identities=27% Similarity=0.461 Sum_probs=41.0
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCc
Q psy93 114 CRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGH 172 (503)
Q Consensus 114 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~ 172 (503)
+.|.|.+++..++-++|+++|+.||.|..|.+.+.-..|||.|.++++|++|+..+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhc
Confidence 57899999999999999999999999999999887789999999999999999876544
No 140
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.87 E-value=6e-05 Score=63.02 Aligned_cols=72 Identities=14% Similarity=0.270 Sum_probs=56.9
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccC--CCeEEEEEe------cCCCceEEeeCCHHHHHHHHHHhCCcccc----CceEEE
Q psy93 114 CRLYLGNIGGDITENDIIELFKPY--GETQELFIN------KEKMFGFIRMDYKHNADKAKAKLDGHVLK----GRSLKI 181 (503)
Q Consensus 114 ~~l~V~nLp~~~te~~L~~~F~~~--G~V~~v~i~------~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~----g~~l~V 181 (503)
|||.|.|||...|.++|.+++... |...-+.++ .+.|||||.|.++++|.+..+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 789999999999999999888654 444444443 24799999999999999999999999775 355566
Q ss_pred Eecc
Q psy93 182 RFAP 185 (503)
Q Consensus 182 ~~a~ 185 (503)
.||.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 6663
No 141
>KOG1548|consensus
Probab=97.80 E-value=5.8e-05 Score=75.19 Aligned_cols=80 Identities=16% Similarity=0.194 Sum_probs=70.3
Q ss_pred ccceeccCcccccCHHHHHHHhccCCCeee--------eEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCC
Q psy93 187 NAAIKVKNLTSCVTNELLELAFGVFGDIER--------AIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQS 258 (503)
Q Consensus 187 ~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~--------~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~ 258 (503)
++.|||.|||.++|.+++.++|++||.|.. |++.++..|..+|=|+|.|-..+++.-|+..|+ ...+ .
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilD-e~~~---r 209 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILD-EDEL---R 209 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhC-cccc---c
Confidence 567999999999999999999999998754 688999899999999999999999999999997 5555 4
Q ss_pred CCeEEeecCCcc
Q psy93 259 LRPVIVEPLELT 270 (503)
Q Consensus 259 ~rpl~V~~~~~~ 270 (503)
++.+.|+.+.-.
T Consensus 210 g~~~rVerAkfq 221 (382)
T KOG1548|consen 210 GKKLRVERAKFQ 221 (382)
T ss_pred CcEEEEehhhhh
Confidence 888999887654
No 142
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.78 E-value=3.6e-05 Score=76.15 Aligned_cols=74 Identities=26% Similarity=0.512 Sum_probs=62.5
Q ss_pred CcEEEEcCCCCCCCHHHH------HHhhccCCCeEEEEEecCC-------Cc--eEEeeCCHHHHHHHHHHhCCccccCc
Q psy93 113 NCRLYLGNIGGDITENDI------IELFKPYGETQELFINKEK-------MF--GFIRMDYKHNADKAKAKLDGHVLKGR 177 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L------~~~F~~~G~V~~v~i~~~k-------g~--aFV~F~~~e~A~~Ai~~l~g~~l~g~ 177 (503)
.+-|||-+||+.+..+++ .++|.+||.|..|.|.+.. +. .||+|.+.++|.+||...+|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 345899999998877763 5799999999999996531 23 39999999999999999999999999
Q ss_pred eEEEEeccc
Q psy93 178 SLKIRFAPI 186 (503)
Q Consensus 178 ~l~V~~a~~ 186 (503)
.|+..+...
T Consensus 194 ~lkatYGTT 202 (480)
T COG5175 194 VLKATYGTT 202 (480)
T ss_pred eEeeecCch
Confidence 999988754
No 143
>KOG4307|consensus
Probab=97.77 E-value=0.00044 Score=74.42 Aligned_cols=70 Identities=24% Similarity=0.397 Sum_probs=59.8
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCCe-EEEEEec-----CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEe
Q psy93 114 CRLYLGNIGGDITENDIIELFKPYGET-QELFINK-----EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRF 183 (503)
Q Consensus 114 ~~l~V~nLp~~~te~~L~~~F~~~G~V-~~v~i~~-----~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~ 183 (503)
+.|-+.|+|++++-+||.+||..|-.+ .+|.+.. ..|-|.|-|++.++|..|...|++..|..++|+|.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 368899999999999999999999755 3444432 257899999999999999999999999999998864
No 144
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.76 E-value=0.00015 Score=60.65 Aligned_cols=82 Identities=13% Similarity=0.129 Sum_probs=66.4
Q ss_pred cceeccCcccccCHHHHHHHhccC--CCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 188 AAIKVKNLTSCVTNELLELAFGVF--GDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 188 ~~L~V~nLp~~~tee~L~~~Fs~~--G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
++|.|+|||...|.+.|.+++... |....+.++.| .+..+.|||||.|.+++.|.+-...+++..+-...+.+++.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999998887654 55666677777 577889999999999999999999998665554556777777
Q ss_pred ecCCc
Q psy93 265 EPLEL 269 (503)
Q Consensus 265 ~~~~~ 269 (503)
.++.-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 77643
No 145
>KOG0106|consensus
Probab=97.74 E-value=2.1e-05 Score=74.85 Aligned_cols=69 Identities=28% Similarity=0.514 Sum_probs=63.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEE
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIR 182 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~ 182 (503)
..+.|+|-||+..+.+.+|.+.|..+|.+....+ ..+++||+|.+.++|.+|+..|++..+.++.|++.
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVE 166 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhh--hccccceeehhhhhhhhcchhccchhhcCceeeec
Confidence 3678999999999999999999999999955544 67899999999999999999999999999999993
No 146
>KOG1995|consensus
Probab=97.72 E-value=0.00012 Score=73.53 Aligned_cols=79 Identities=18% Similarity=0.216 Sum_probs=67.0
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEE--------EEEe------cCCCceEEeeCCHHHHHHHHHHhCCcccc
Q psy93 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQE--------LFIN------KEKMFGFIRMDYKHNADKAKAKLDGHVLK 175 (503)
Q Consensus 110 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~--------v~i~------~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~ 175 (503)
.+...+|||-+||..+++++|.++|.+||.|.. |+|. +.|+-|.|.|.++..|+.||.-+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 345567999999999999999999999998852 3332 34789999999999999999999999999
Q ss_pred CceEEEEeccccc
Q psy93 176 GRSLKIRFAPINA 188 (503)
Q Consensus 176 g~~l~V~~a~~~~ 188 (503)
+.+|+|.++...+
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999998775544
No 147
>KOG1457|consensus
Probab=97.70 E-value=0.00018 Score=67.71 Aligned_cols=83 Identities=16% Similarity=0.110 Sum_probs=69.2
Q ss_pred ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCC--CCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 187 NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE--RGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 187 ~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~--~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
-++|||.+||.++...+|+.+|..|---+.+.+.... ....+.+|||+|.+..+|..|++.|| |+.|-......+.+
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLN-GvrFDpE~~stLhi 112 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALN-GVRFDPETGSTLHI 112 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhc-CeeeccccCceeEe
Confidence 4689999999999999999999999777776664432 22446799999999999999999997 88887778888888
Q ss_pred ecCCcc
Q psy93 265 EPLELT 270 (503)
Q Consensus 265 ~~~~~~ 270 (503)
+.++..
T Consensus 113 ElAKSN 118 (284)
T KOG1457|consen 113 ELAKSN 118 (284)
T ss_pred eehhcC
Confidence 887654
No 148
>KOG0226|consensus
Probab=97.64 E-value=4.9e-05 Score=72.79 Aligned_cols=73 Identities=21% Similarity=0.482 Sum_probs=63.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEe------cCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEec
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFIN------KEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~------~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a 184 (503)
+..+||.+.|..+++.+.|...|.+|-.....+++ +++||+||.|.++.++..|+..|+|..+..++|++..+
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 45679999999999999999999999765555554 56899999999999999999999999999999988754
No 149
>KOG4454|consensus
Probab=97.62 E-value=3.4e-05 Score=72.36 Aligned_cols=77 Identities=18% Similarity=0.090 Sum_probs=66.2
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEee
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVE 265 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~ 265 (503)
...+|||.|+...++++.|.++|-+-|.|..+.|..+.++..+ ||||.|.+.-+..-|++.+| +..+ -.+++.+.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~n-g~~l---~~~e~q~~ 82 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLEN-GDDL---EEDEEQRT 82 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcc-cchh---ccchhhcc
Confidence 3578999999999999999999999999999999888888877 99999999999999999997 5444 35555555
Q ss_pred cC
Q psy93 266 PL 267 (503)
Q Consensus 266 ~~ 267 (503)
+.
T Consensus 83 ~r 84 (267)
T KOG4454|consen 83 LR 84 (267)
T ss_pred cc
Confidence 53
No 150
>KOG1365|consensus
Probab=97.61 E-value=0.0005 Score=69.37 Aligned_cols=134 Identities=18% Similarity=0.178 Sum_probs=101.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCe----EEEEE--ecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPYGET----QELFI--NKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI 186 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~G~V----~~v~i--~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~ 186 (503)
++.|-..+||...++.+|..||...-.. .-|.. .+..+.+.|.|.+++.-+-|++. +...+.++.|.|-.+..
T Consensus 60 ~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYka~g 138 (508)
T KOG1365|consen 60 NVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYKATG 138 (508)
T ss_pred ceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeeccCc
Confidence 4456678999999999999999754221 11211 23467999999999988888874 66677788888865532
Q ss_pred ----------------------ccceeccCcccccCHHHHHHHhccCC----CeeeeEEEeCCCCCceeEEEEEeCCHHH
Q psy93 187 ----------------------NAAIKVKNLTSCVTNELLELAFGVFG----DIERAIVIVDERGNSKCEGIVEFARKPA 240 (503)
Q Consensus 187 ----------------------~~~L~V~nLp~~~tee~L~~~Fs~~G----~V~~~~v~~d~~g~skg~gfV~F~s~e~ 240 (503)
.-.|...+||.+.++.++.++|..-. .++.+-+++.++|+.+|-|||.|...++
T Consensus 139 e~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~ 218 (508)
T KOG1365|consen 139 EEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEED 218 (508)
T ss_pred hhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHH
Confidence 12356679999999999999997433 3445666677789999999999999999
Q ss_pred HHHHHHH
Q psy93 241 AAQALRR 247 (503)
Q Consensus 241 A~kAl~~ 247 (503)
|..|+.+
T Consensus 219 aq~aL~k 225 (508)
T KOG1365|consen 219 AQFALRK 225 (508)
T ss_pred HHHHHHH
Confidence 9999987
No 151
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.50 E-value=0.00017 Score=53.55 Aligned_cols=52 Identities=17% Similarity=0.481 Sum_probs=44.8
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHH
Q psy93 114 CRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAK 166 (503)
Q Consensus 114 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai 166 (503)
+.|-|.+.|++..+. |..+|..||+|..+.+.....+.||.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 568899999776654 5558889999999999877899999999999999985
No 152
>KOG0116|consensus
Probab=97.49 E-value=0.00014 Score=76.15 Aligned_cols=74 Identities=32% Similarity=0.361 Sum_probs=59.0
Q ss_pred cceeccCcccccCHHHHHHHhccCCCeeeeEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeec
Q psy93 188 AAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEP 266 (503)
Q Consensus 188 ~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~-~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~ 266 (503)
..|||.|||.+++..+|+++|..||.|....|.... .++..+||||+|.+.+++..||.+- ... ...+.+.|+-
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As--p~~---ig~~kl~Vee 363 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS--PLE---IGGRKLNVEE 363 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC--ccc---cCCeeEEEEe
Confidence 359999999999999999999999999998886542 3444599999999999999999873 222 2556666653
No 153
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=97.48 E-value=0.002 Score=74.54 Aligned_cols=22 Identities=14% Similarity=0.099 Sum_probs=11.0
Q ss_pred ccccccccCCCCCCcccCCCCC
Q psy93 429 VVGNVTGVDNKGSAMDFDQGGR 450 (503)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~ 450 (503)
+++..-.+.+-+++|..+..-+
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~ 581 (1021)
T PTZ00266 560 SDGRNHSGVRSGIHCSIQSSAR 581 (1021)
T ss_pred ccCCCccccccccccccccccc
Confidence 3344444555566666554433
No 154
>KOG4209|consensus
Probab=97.35 E-value=0.00023 Score=69.12 Aligned_cols=80 Identities=26% Similarity=0.243 Sum_probs=67.6
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEE
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVI 263 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~-~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~ 263 (503)
.....+||+|+...++.+++...|+.||.|..+.|.+|. .+.+++|+||+|.+.+.+.+|+. |+ +..+ .++++.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~-gs~i---~~~~i~ 173 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LD-GSEI---PGPAIE 173 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cC-Cccc---ccccce
Confidence 346789999999999999999999999999999999884 55789999999999999999999 86 4444 477777
Q ss_pred eecCCc
Q psy93 264 VEPLEL 269 (503)
Q Consensus 264 V~~~~~ 269 (503)
|.+...
T Consensus 174 vt~~r~ 179 (231)
T KOG4209|consen 174 VTLKRT 179 (231)
T ss_pred eeeeee
Confidence 766443
No 155
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=97.34 E-value=0.0028 Score=73.34 Aligned_cols=15 Identities=20% Similarity=0.003 Sum_probs=6.4
Q ss_pred cccccccccCCCCCC
Q psy93 428 AVVGNVTGVDNKGSA 442 (503)
Q Consensus 428 ~~~~~~~~~~~~~~~ 442 (503)
.++.--+.++..+++
T Consensus 566 ~~~~~~~~~~~~~~~ 580 (1021)
T PTZ00266 566 SGVRSGIHCSIQSSA 580 (1021)
T ss_pred ccccccccccccccc
Confidence 334444444444444
No 156
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.25 E-value=0.00049 Score=58.65 Aligned_cols=57 Identities=26% Similarity=0.351 Sum_probs=38.9
Q ss_pred cceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhh
Q psy93 188 AAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCA 249 (503)
Q Consensus 188 ~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln 249 (503)
+.|+|.+++..++-++|+++|+.||.|..|.+... ...|||.|.+.+.|.+|+..+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-----~~~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-----DTEGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------SEEEEEESS---HHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-----CCEEEEEECCcchHHHHHHHHH
Confidence 45788899999999999999999999999888765 3489999999999999999986
No 157
>KOG0151|consensus
Probab=97.21 E-value=0.00053 Score=74.05 Aligned_cols=68 Identities=25% Similarity=0.429 Sum_probs=59.2
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC----CCCCceeEEEEEeCCHHHHHHHHHHhhCCeee
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD----ERGNSKCEGIVEFARKPAAAQALRRCAEGCFF 254 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d----~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~ 254 (503)
.+++|||.||+++++++.|...|..||+|..++|+.. +.-....++||.|-+..+|..|+..|+ +.++
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lq-g~iv 244 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQ-GIIV 244 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhc-ceee
Confidence 4789999999999999999999999999999999765 233456799999999999999999997 5444
No 158
>KOG1855|consensus
Probab=97.14 E-value=0.00044 Score=70.81 Aligned_cols=62 Identities=18% Similarity=0.224 Sum_probs=54.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC-------------------CCceEEeeCCHHHHHHHHHHhCC
Q psy93 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-------------------KMFGFIRMDYKHNADKAKAKLDG 171 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~-------------------kg~aFV~F~~~e~A~~Ai~~l~g 171 (503)
.++.+|.+.|||.+-.-+.|.+||+.||.|+.|.|.+. +-+|||+|+..+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 35789999999999999999999999999999999532 34899999999999999987754
Q ss_pred c
Q psy93 172 H 172 (503)
Q Consensus 172 ~ 172 (503)
.
T Consensus 309 e 309 (484)
T KOG1855|consen 309 E 309 (484)
T ss_pred h
Confidence 3
No 159
>KOG3152|consensus
Probab=97.13 E-value=0.00033 Score=67.34 Aligned_cols=67 Identities=21% Similarity=0.381 Sum_probs=58.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCC------------------CceEEeeCCHHHHHHHHHHhCCcc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEK------------------MFGFIRMDYKHNADKAKAKLDGHV 173 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k------------------g~aFV~F~~~e~A~~Ai~~l~g~~ 173 (503)
..-.||+++||+.+...-|+++|+.||.|-.|.+-+.. .-+.|+|.+...|..+...||++.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 34579999999999999999999999999999984321 138899999999999999999999
Q ss_pred ccCce
Q psy93 174 LKGRS 178 (503)
Q Consensus 174 l~g~~ 178 (503)
|.|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99865
No 160
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.04 E-value=0.0017 Score=54.67 Aligned_cols=71 Identities=17% Similarity=0.271 Sum_probs=53.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEE-------------EecCCCceEEeeCCHHHHHHHHHHhCCccccCce-
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPYGETQELF-------------INKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRS- 178 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~-------------i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~- 178 (503)
.+.|.|-+.|+. ....|...|++||.|.+.. +........|+|+++.+|.+|+. .||..|.|..
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 456899999977 6677888999999998885 45567899999999999999997 5999998754
Q ss_pred EEEEecc
Q psy93 179 LKIRFAP 185 (503)
Q Consensus 179 l~V~~a~ 185 (503)
+-|.+++
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 4566654
No 161
>KOG4660|consensus
Probab=97.00 E-value=0.0006 Score=72.04 Aligned_cols=61 Identities=26% Similarity=0.310 Sum_probs=53.9
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhh
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCA 249 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln 249 (503)
.+..+|+|-|||..+++++|..+|+.||+|..+..-.. ..+..||+|-+..+|+.|++.|+
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~----~~~~~~v~FyDvR~A~~Alk~l~ 133 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN----KRGIVFVEFYDVRDAERALKALN 133 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc----cCceEEEEEeehHhHHHHHHHHH
Confidence 45678999999999999999999999999998654333 36799999999999999999998
No 162
>KOG1029|consensus
Probab=96.89 E-value=0.026 Score=61.99 Aligned_cols=18 Identities=17% Similarity=0.222 Sum_probs=10.9
Q ss_pred HHHHhhhccccCCCCCCC
Q psy93 14 QLYQARLRSYTGHFKIPE 31 (503)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~ 31 (503)
+..--|++++.-+-..|-
T Consensus 76 kLi~lkLqG~~lP~~LPP 93 (1118)
T KOG1029|consen 76 KLIKLKLQGIQLPPVLPP 93 (1118)
T ss_pred HHHHHHhcCCcCCCCCCh
Confidence 455667777766555443
No 163
>KOG0128|consensus
Probab=96.80 E-value=0.00018 Score=79.18 Aligned_cols=139 Identities=22% Similarity=0.189 Sum_probs=112.2
Q ss_pred cEEEEcCCCCCCCHH-HHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc
Q psy93 114 CRLYLGNIGGDITEN-DIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI 186 (503)
Q Consensus 114 ~~l~V~nLp~~~te~-~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~ 186 (503)
...++.|+.+..... .++..|..++.|..|.++.. ..+.++.+....+++.|.. ..+.-+.++.+.|..+++
T Consensus 572 ~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~ad~ 650 (881)
T KOG0128|consen 572 REKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGLADA 650 (881)
T ss_pred hhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCCCCc
Confidence 346777887666555 67889999999999999751 2389999999999998865 577778888888877653
Q ss_pred ----------------ccceeccCcccccCHHHHHHHhccCCCeeeeEEE-eCCCCCceeEEEEEeCCHHHHHHHHHHhh
Q psy93 187 ----------------NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVI-VDERGNSKCEGIVEFARKPAAAQALRRCA 249 (503)
Q Consensus 187 ----------------~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~-~d~~g~skg~gfV~F~s~e~A~kAl~~ln 249 (503)
-.++||+||+..+.+.+|...|+.++.+..+.+. ...++..+|+|||.|...+.+.+|+....
T Consensus 651 ~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d 730 (881)
T KOG0128|consen 651 EEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRD 730 (881)
T ss_pred hhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhh
Confidence 2478999999999999999999999988877665 33467779999999999999999998764
Q ss_pred CCeee
Q psy93 250 EGCFF 254 (503)
Q Consensus 250 ~g~~~ 254 (503)
++++
T Consensus 731 -~~~~ 734 (881)
T KOG0128|consen 731 -SCFF 734 (881)
T ss_pred -hhhh
Confidence 6655
No 164
>KOG2314|consensus
Probab=96.78 E-value=0.0027 Score=67.11 Aligned_cols=81 Identities=20% Similarity=0.206 Sum_probs=62.0
Q ss_pred cceeccCcccc------cCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCe
Q psy93 188 AAIKVKNLTSC------VTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRP 261 (503)
Q Consensus 188 ~~L~V~nLp~~------~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rp 261 (503)
.+|+|.|+|-- .-...|.++|+++|+|....++.++.+.++||.|++|.+..+|..|++.|| |..+. ....
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~-G~~ld--knHt 135 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLN-GKRLD--KNHT 135 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcc-cceec--ccce
Confidence 46677777632 222457789999999999999989888899999999999999999999998 44442 4556
Q ss_pred EEeecCCccc
Q psy93 262 VIVEPLELTD 271 (503)
Q Consensus 262 l~V~~~~~~~ 271 (503)
..|..+...+
T Consensus 136 f~v~~f~d~e 145 (698)
T KOG2314|consen 136 FFVRLFKDFE 145 (698)
T ss_pred EEeehhhhHH
Confidence 6666654443
No 165
>KOG0112|consensus
Probab=96.73 E-value=0.0021 Score=71.32 Aligned_cols=78 Identities=21% Similarity=0.318 Sum_probs=71.4
Q ss_pred CcCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccC--ceEEEEeccc
Q psy93 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKG--RSLKIRFAPI 186 (503)
Q Consensus 109 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g--~~l~V~~a~~ 186 (503)
..+.++.|||++|++++....|...|..||+|..|.+-....||||.|++...|+.|+..|-+..|.+ +.|.|.++.+
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccC
Confidence 55667899999999999999999999999999999998778899999999999999999999999985 7899988853
No 166
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.69 E-value=0.0057 Score=49.31 Aligned_cols=70 Identities=19% Similarity=0.136 Sum_probs=44.6
Q ss_pred cceeccCcccccCHHH----HHHHhccCC-CeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeE
Q psy93 188 AAIKVKNLTSCVTNEL----LELAFGVFG-DIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPV 262 (503)
Q Consensus 188 ~~L~V~nLp~~~tee~----L~~~Fs~~G-~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl 262 (503)
..|+|.|||.+.+... |+.++..|| +|..+ +.+.|+|.|.+.+.|..|.+.|++...+ +..|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v---------~~~tAilrF~~~~~A~RA~KRmegEdVf----G~kI 69 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV---------SGGTAILRFPNQEFAERAQKRMEGEDVF----GNKI 69 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SS----SS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE---------eCCEEEEEeCCHHHHHHHHHhhcccccc----cceE
Confidence 4689999999887765 556777886 55544 1358999999999999999999744433 7778
Q ss_pred EeecCCcc
Q psy93 263 IVEPLELT 270 (503)
Q Consensus 263 ~V~~~~~~ 270 (503)
.|.+....
T Consensus 70 ~v~~~~~~ 77 (90)
T PF11608_consen 70 SVSFSPKN 77 (90)
T ss_dssp EEESS--S
T ss_pred EEEEcCCc
Confidence 88776443
No 167
>KOG1995|consensus
Probab=96.62 E-value=0.0016 Score=65.52 Aligned_cols=79 Identities=27% Similarity=0.215 Sum_probs=64.1
Q ss_pred cceeccCcccccCHHHHHHHhccCCCeee--------eEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCC
Q psy93 188 AAIKVKNLTSCVTNELLELAFGVFGDIER--------AIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQS 258 (503)
Q Consensus 188 ~~L~V~nLp~~~tee~L~~~Fs~~G~V~~--------~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~ 258 (503)
.+|||.+||..++..+|.++|.+|+.|.. |.|.+| +|+.+|+-|.|+|+++..|+.|+.-++... + +
T Consensus 67 ~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkd-f---~ 142 (351)
T KOG1995|consen 67 ETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKD-F---C 142 (351)
T ss_pred ccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccc-c---c
Confidence 57899999999999999999999998753 345555 688999999999999999999999997443 3 3
Q ss_pred CCeEEeecCCcc
Q psy93 259 LRPVIVEPLELT 270 (503)
Q Consensus 259 ~rpl~V~~~~~~ 270 (503)
+.+|.|..+...
T Consensus 143 gn~ikvs~a~~r 154 (351)
T KOG1995|consen 143 GNTIKVSLAERR 154 (351)
T ss_pred CCCchhhhhhhc
Confidence 466666665544
No 168
>KOG2314|consensus
Probab=96.56 E-value=0.0051 Score=65.15 Aligned_cols=72 Identities=15% Similarity=0.231 Sum_probs=58.4
Q ss_pred CCcEEEEcCCCCCC--C----HHHHHHhhccCCCeEEEEEec-----CCCceEEeeCCHHHHHHHHHHhCCcccc-CceE
Q psy93 112 NNCRLYLGNIGGDI--T----ENDIIELFKPYGETQELFINK-----EKMFGFIRMDYKHNADKAKAKLDGHVLK-GRSL 179 (503)
Q Consensus 112 ~~~~l~V~nLp~~~--t----e~~L~~~F~~~G~V~~v~i~~-----~kg~aFV~F~~~e~A~~Ai~~l~g~~l~-g~~l 179 (503)
-.+.|+|.|+|.-- . ..-|.++|+++|+|+.+.++. .+||.|++|++..+|+.|++.|||+.|+ .+++
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 34679999998421 1 234577899999999999863 4899999999999999999999999877 6788
Q ss_pred EEEe
Q psy93 180 KIRF 183 (503)
Q Consensus 180 ~V~~ 183 (503)
.|..
T Consensus 137 ~v~~ 140 (698)
T KOG2314|consen 137 FVRL 140 (698)
T ss_pred Eeeh
Confidence 7753
No 169
>KOG2416|consensus
Probab=96.51 E-value=0.0019 Score=68.63 Aligned_cols=74 Identities=18% Similarity=0.234 Sum_probs=62.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhc-cCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCcccc---CceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFK-PYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLK---GRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~-~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~---g~~l~V~~a~ 185 (503)
.++.|||.||--.+|.-.|+.|+. .+|.|.+.+|.+-|..|||.|.+.++|...+..||+..+. .+.|.|.|..
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~ 520 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVR 520 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecc
Confidence 467899999999999999999998 6778888888777889999999999999999999998554 4566666543
No 170
>KOG4210|consensus
Probab=96.46 E-value=0.0021 Score=64.61 Aligned_cols=72 Identities=18% Similarity=0.331 Sum_probs=63.8
Q ss_pred cEEE-EcCCCCCCCHHHHHHhhccCCCeEEEEEec------CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc
Q psy93 114 CRLY-LGNIGGDITENDIIELFKPYGETQELFINK------EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI 186 (503)
Q Consensus 114 ~~l~-V~nLp~~~te~~L~~~F~~~G~V~~v~i~~------~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~ 186 (503)
.++| |++|+.+++.++|+.+|..+|.|..+.++. .++||||.|.+...+..++.. +...+.++++.|....+
T Consensus 185 ~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 263 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEP 263 (285)
T ss_pred ccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCC
Confidence 3455 999999999999999999999999999964 378999999999999999876 77789999999988765
No 171
>KOG1029|consensus
Probab=96.38 E-value=0.038 Score=60.77 Aligned_cols=11 Identities=9% Similarity=-0.097 Sum_probs=5.0
Q ss_pred HHHHHHHHHHh
Q psy93 238 KPAAAQALRRC 248 (503)
Q Consensus 238 ~e~A~kAl~~l 248 (503)
.+...-|+..+
T Consensus 248 ~dEfilam~li 258 (1118)
T KOG1029|consen 248 ADEFILAMHLI 258 (1118)
T ss_pred HHHHHHHHHHH
Confidence 44444454443
No 172
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.24 E-value=0.0064 Score=45.04 Aligned_cols=52 Identities=19% Similarity=0.208 Sum_probs=40.7
Q ss_pred cceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHH
Q psy93 188 AAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245 (503)
Q Consensus 188 ~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl 245 (503)
+.|.|.+.++...+ .|...|..||+|..+.+... ..+.+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~-----~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPES-----TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCC-----CcEEEEEECCHHHHHhhC
Confidence 45677787776554 45568999999999877622 558999999999999985
No 173
>KOG0163|consensus
Probab=95.96 E-value=0.069 Score=58.66 Aligned_cols=36 Identities=33% Similarity=0.451 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHH
Q psy93 344 WEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEED 379 (503)
Q Consensus 344 ~E~~eRq~ee~r~reeE~~r~rqee~~~~~~r~eEe 379 (503)
+|.+++++|+++.+.+|..++-+.+.++++.++.|+
T Consensus 960 ~e~kRK~eEeqr~~qee~e~~l~~e~q~qla~e~ee 995 (1259)
T KOG0163|consen 960 METKRKAEEEQRKAQEEEERRLALELQEQLAKEAEE 995 (1259)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555455555555555554444
No 174
>KOG1855|consensus
Probab=95.85 E-value=0.016 Score=59.70 Aligned_cols=64 Identities=27% Similarity=0.251 Sum_probs=54.4
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC---C---CCCc--------eeEEEEEeCCHHHHHHHHHHhh
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD---E---RGNS--------KCEGIVEFARKPAAAQALRRCA 249 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d---~---~g~s--------kg~gfV~F~s~e~A~kAl~~ln 249 (503)
+..+|.+.|||.+..-+.|.++|+.+|.|..|.|... + .+.+ +-+|+|+|+..+.|.+|.+.++
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 4678999999999999999999999999999998765 2 2222 4468999999999999999986
No 175
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.82 E-value=0.04 Score=44.46 Aligned_cols=54 Identities=20% Similarity=0.374 Sum_probs=42.4
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhC
Q psy93 114 CRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLD 170 (503)
Q Consensus 114 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~ 170 (503)
...+|+ .|..+...||.++|+.||.|.--.| +-..|||.....+.|..|+..++
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi--~dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI--NDTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEE--CTTEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEE--cCCcEEEEeecHHHHHHHHHHhc
Confidence 346666 9999999999999999999876666 45689999999999999988875
No 176
>KOG2202|consensus
Probab=95.81 E-value=0.0051 Score=59.45 Aligned_cols=57 Identities=21% Similarity=0.432 Sum_probs=48.3
Q ss_pred HHHHhhc-cCCCeEEEEEecC-----CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 129 DIIELFK-PYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 129 ~L~~~F~-~~G~V~~v~i~~~-----kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
+|...|+ +||+|.+++|-.+ .|-+||.|...++|++|+..||+..+.|++|...+.+
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 4444445 9999999987554 5789999999999999999999999999999998764
No 177
>KOG0129|consensus
Probab=95.73 E-value=0.036 Score=58.49 Aligned_cols=93 Identities=15% Similarity=0.265 Sum_probs=69.7
Q ss_pred cccCcCCCcEEEEcCCCCCCCHHHHHHhhc-cCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCce
Q psy93 106 KDIKFANNCRLYLGNIGGDITENDIIELFK-PYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRS 178 (503)
Q Consensus 106 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~ 178 (503)
......+..|||||+||-.++.++|..+|. -||.|..+-|..+ ||-|=|+|.+..+-.+||.. +-
T Consensus 363 ~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa--------rF 434 (520)
T KOG0129|consen 363 HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA--------RF 434 (520)
T ss_pred cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh--------he
Confidence 344555678999999999999999999999 8999999988654 78899999999999999875 34
Q ss_pred EEEEecccccceeccCcccccCHHHHHHHhc
Q psy93 179 LKIRFAPINAAIKVKNLTSCVTNELLELAFG 209 (503)
Q Consensus 179 l~V~~a~~~~~L~V~nLp~~~tee~L~~~Fs 209 (503)
|.|.-.+-.+.|-|+ +.+-++.+.+.++
T Consensus 435 vql~h~d~~KRVEIk---PYv~eDq~CdeC~ 462 (520)
T KOG0129|consen 435 VQLDHTDIDKRVEIK---PYVMEDQLCDECG 462 (520)
T ss_pred EEEeccccceeeeec---ceeccccchhhhc
Confidence 455444444444443 4454555555554
No 178
>KOG4849|consensus
Probab=95.58 E-value=0.0089 Score=59.85 Aligned_cols=70 Identities=14% Similarity=0.258 Sum_probs=58.5
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCC--CeEEEEEe------cCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEe
Q psy93 114 CRLYLGNIGGDITENDIIELFKPYG--ETQELFIN------KEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRF 183 (503)
Q Consensus 114 ~~l~V~nLp~~~te~~L~~~F~~~G--~V~~v~i~------~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~ 183 (503)
-++||+||-+.+|++||.+.+...| .|.++++. .+||||+|...+..+.++.++.|-.+.|+|+.-.|..
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 3699999999999999999887776 45555553 4689999999999999999999999999998766643
No 179
>KOG2416|consensus
Probab=95.55 E-value=0.026 Score=60.32 Aligned_cols=78 Identities=17% Similarity=0.196 Sum_probs=63.0
Q ss_pred ccceeccCcccccCHHHHHHHhc-cCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEee
Q psy93 187 NAAIKVKNLTSCVTNELLELAFG-VFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVE 265 (503)
Q Consensus 187 ~~~L~V~nLp~~~tee~L~~~Fs-~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~ 265 (503)
++.|+|.||-..+|.-+|+.++. .+|.|+.. +.| +-+..|||.|.+.++|...+.+|+ +..|-..+++.|.+.
T Consensus 444 SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmD---kIKShCyV~yss~eEA~atr~Alh-nV~WP~sNPK~L~ad 517 (718)
T KOG2416|consen 444 SNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMD---KIKSHCYVSYSSVEEAAATREALH-NVQWPPSNPKHLIAD 517 (718)
T ss_pred cceEeeecccccchHHHHHHHHhhccCchHHH--HHH---HhhcceeEecccHHHHHHHHHHHh-ccccCCCCCceeEee
Confidence 57899999999999999999999 56667666 333 226689999999999999999997 666666778888887
Q ss_pred cCCcc
Q psy93 266 PLELT 270 (503)
Q Consensus 266 ~~~~~ 270 (503)
+....
T Consensus 518 f~~~d 522 (718)
T KOG2416|consen 518 FVRAD 522 (718)
T ss_pred ecchh
Confidence 76543
No 180
>KOG4676|consensus
Probab=95.52 E-value=0.016 Score=58.92 Aligned_cols=76 Identities=21% Similarity=0.267 Sum_probs=60.6
Q ss_pred ceeccCcccccCHHHHHHHhccCCCeeeeEEEeCC----CCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 189 AIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE----RGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 189 ~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~----~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
.|.|.||.+.++.+.++.+|...|+|..+.|+.+. -......|||.|.+...+..|-..- +-.|+ +++++|
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLt-ntvfv----draliv 83 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLT-NTVFV----DRALIV 83 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhc-cceee----eeeEEE
Confidence 67899999999999999999999999999988752 2234568999999999988886544 35555 777777
Q ss_pred ecCCc
Q psy93 265 EPLEL 269 (503)
Q Consensus 265 ~~~~~ 269 (503)
.|+..
T Consensus 84 ~p~~~ 88 (479)
T KOG4676|consen 84 RPYGD 88 (479)
T ss_pred EecCC
Confidence 76543
No 181
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.40 E-value=0.057 Score=54.07 Aligned_cols=76 Identities=20% Similarity=0.284 Sum_probs=55.7
Q ss_pred ccceeccCcccccCHHHH------HHHhccCCCeeeeEEEeCC-CCCc-ee-E-EEEEeCCHHHHHHHHHHhhCCeeeec
Q psy93 187 NAAIKVKNLTSCVTNELL------ELAFGVFGDIERAIVIVDE-RGNS-KC-E-GIVEFARKPAAAQALRRCAEGCFFLT 256 (503)
Q Consensus 187 ~~~L~V~nLp~~~tee~L------~~~Fs~~G~V~~~~v~~d~-~g~s-kg-~-gfV~F~s~e~A~kAl~~ln~g~~~~~ 256 (503)
++-+||-+||+.+..+++ .++|.+||+|..|.|.+.. .-.+ .+ + .||+|.+.++|..||...+ +.++
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vD-gs~~-- 190 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVD-GSLL-- 190 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhc-cccc--
Confidence 467899999988877762 4789999999998886652 1111 11 2 2999999999999999986 6665
Q ss_pred CCCCeEEeec
Q psy93 257 QSLRPVIVEP 266 (503)
Q Consensus 257 ~~~rpl~V~~ 266 (503)
++|.+....
T Consensus 191 -DGr~lkatY 199 (480)
T COG5175 191 -DGRVLKATY 199 (480)
T ss_pred -cCceEeeec
Confidence 566655543
No 182
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.39 E-value=0.054 Score=48.53 Aligned_cols=71 Identities=21% Similarity=0.328 Sum_probs=51.7
Q ss_pred cEEEEcCCC------CCCCH---HHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEec
Q psy93 114 CRLYLGNIG------GDITE---NDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184 (503)
Q Consensus 114 ~~l~V~nLp------~~~te---~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a 184 (503)
.||.|.=+. ....+ .+|.+.|..||.|.-|++.. +.-+|+|.+..+|.+|+. ++|+.+.|+.|+|..-
T Consensus 28 aTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~--~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LK 104 (146)
T PF08952_consen 28 ATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG--DTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLK 104 (146)
T ss_dssp -EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET--TCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE-
T ss_pred ceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC--CeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeC
Confidence 367776554 12232 36778899999999888875 478999999999999996 8999999999999876
Q ss_pred ccc
Q psy93 185 PIN 187 (503)
Q Consensus 185 ~~~ 187 (503)
.+.
T Consensus 105 tpd 107 (146)
T PF08952_consen 105 TPD 107 (146)
T ss_dssp ---
T ss_pred Ccc
Confidence 554
No 183
>KOG2591|consensus
Probab=95.08 E-value=0.038 Score=58.63 Aligned_cols=86 Identities=10% Similarity=0.082 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhCCccccCceEEEEecccccceeccCcccccCHHHHHHHhcc--CCCeeeeEEEeCCCCCceeEEEEEeC
Q psy93 159 KHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGV--FGDIERAIVIVDERGNSKCEGIVEFA 236 (503)
Q Consensus 159 ~e~A~~Ai~~l~g~~l~g~~l~V~~a~~~~~L~V~nLp~~~tee~L~~~Fs~--~G~V~~~~v~~d~~g~skg~gfV~F~ 236 (503)
.+-...+++...+..++.+-++|......+.|++..||..+..|+|+.+|+. |-++++|.+..+. --||+|+
T Consensus 147 vdLI~Evlresp~VqvDekgekVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------nWyITfe 220 (684)
T KOG2591|consen 147 VDLIVEVLRESPNVQVDEKGEKVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------NWYITFE 220 (684)
T ss_pred hHHHHHHHhcCCCceeccCccccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------ceEEEee
Confidence 4445567777778888999999998888888999999999999999999985 7788899886653 3599999
Q ss_pred CHHHHHHHHHHhhC
Q psy93 237 RKPAAAQALRRCAE 250 (503)
Q Consensus 237 s~e~A~kAl~~ln~ 250 (503)
+..+|+.|...|.+
T Consensus 221 sd~DAQqAykylre 234 (684)
T KOG2591|consen 221 SDTDAQQAYKYLRE 234 (684)
T ss_pred cchhHHHHHHHHHH
Confidence 99999999998863
No 184
>KOG1996|consensus
Probab=95.04 E-value=0.046 Score=53.79 Aligned_cols=58 Identities=24% Similarity=0.349 Sum_probs=49.4
Q ss_pred HHHHHHhhccCCCeEEEEEecC-------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEec
Q psy93 127 ENDIIELFKPYGETQELFINKE-------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184 (503)
Q Consensus 127 e~~L~~~F~~~G~V~~v~i~~~-------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a 184 (503)
++++++-+.+||.|..|.|... .--.||+|...++|.+|+-.|||..|.|+.++..|.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 4567888999999999888532 235899999999999999999999999999988765
No 185
>KOG2135|consensus
Probab=94.95 E-value=0.014 Score=60.81 Aligned_cols=82 Identities=21% Similarity=0.316 Sum_probs=66.0
Q ss_pred CcEEEEcCCCCCC-CHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccccccee
Q psy93 113 NCRLYLGNIGGDI-TENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIK 191 (503)
Q Consensus 113 ~~~l~V~nLp~~~-te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~~~~L~ 191 (503)
.|.|-+.-.|+.. |.++|...|.+||.|..|.|.-+.-.|.|+|.+..+|-.|.. .++..|+++.|+|.|.+++.
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~--- 447 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP--- 447 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCchhhheeeeeccccccchhc-cccceecCceeEEEEecCCc---
Confidence 3445566666554 578999999999999999997666689999999999977764 68999999999999998765
Q ss_pred ccCcccc
Q psy93 192 VKNLTSC 198 (503)
Q Consensus 192 V~nLp~~ 198 (503)
+.|+|..
T Consensus 448 ~tn~pav 454 (526)
T KOG2135|consen 448 VTNIPAV 454 (526)
T ss_pred ccCcccC
Confidence 5666543
No 186
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.57 E-value=0.087 Score=44.41 Aligned_cols=77 Identities=18% Similarity=0.192 Sum_probs=48.1
Q ss_pred ccceeccCcccccCHHHHHHHhccCCCeeeeEE-EeC-------CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCC
Q psy93 187 NAAIKVKNLTSCVTNELLELAFGVFGDIERAIV-IVD-------ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQS 258 (503)
Q Consensus 187 ~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v-~~d-------~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~ 258 (503)
.+.|.|-+.|+. ....|.+.|++||+|.+..- ..+ +......+-.|+|+++.+|.+||.. +|.++ .
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~--NG~i~---~ 79 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK--NGTIF---S 79 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT--TTEEE---T
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh--CCeEE---c
Confidence 345677788887 44567789999999987741 110 0011245889999999999999986 68887 3
Q ss_pred C-CeEEeecCCc
Q psy93 259 L-RPVIVEPLEL 269 (503)
Q Consensus 259 ~-rpl~V~~~~~ 269 (503)
+ -.+-|.|.+.
T Consensus 80 g~~mvGV~~~~~ 91 (100)
T PF05172_consen 80 GSLMVGVKPCDP 91 (100)
T ss_dssp TCEEEEEEE-HH
T ss_pred CcEEEEEEEcHH
Confidence 4 3455666543
No 187
>KOG4849|consensus
Probab=94.55 E-value=0.032 Score=55.96 Aligned_cols=67 Identities=18% Similarity=0.084 Sum_probs=54.5
Q ss_pred ccceeccCcccccCHHHHHHHhccCCC--eeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeee
Q psy93 187 NAAIKVKNLTSCVTNELLELAFGVFGD--IERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFF 254 (503)
Q Consensus 187 ~~~L~V~nLp~~~tee~L~~~Fs~~G~--V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~ 254 (503)
..++||+||-+.+|+++|.+.+...|. +.++++..+ .+|.+||||+|...+..+.++.++.|- ...+
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP-~k~i 149 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILP-TKTI 149 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcc-ccee
Confidence 357899999999999999999887773 455555555 578999999999999999999999885 4444
No 188
>KOG2068|consensus
Probab=94.48 E-value=0.017 Score=57.97 Aligned_cols=73 Identities=25% Similarity=0.471 Sum_probs=60.5
Q ss_pred cEEEEcCCCCCCCHHHHH---HhhccCCCeEEEEEecCC---------CceEEeeCCHHHHHHHHHHhCCccccCceEEE
Q psy93 114 CRLYLGNIGGDITENDII---ELFKPYGETQELFINKEK---------MFGFIRMDYKHNADKAKAKLDGHVLKGRSLKI 181 (503)
Q Consensus 114 ~~l~V~nLp~~~te~~L~---~~F~~~G~V~~v~i~~~k---------g~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V 181 (503)
.-+||-+|+..+..+++. +.|.+||.|.+|.+.+.. .-++|+|...++|..||...++..++++.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 458899999887666553 589999999999886532 35899999999999999999999999999888
Q ss_pred Eeccc
Q psy93 182 RFAPI 186 (503)
Q Consensus 182 ~~a~~ 186 (503)
.+...
T Consensus 158 ~~gtt 162 (327)
T KOG2068|consen 158 SLGTT 162 (327)
T ss_pred hhCCC
Confidence 77654
No 189
>KOG1144|consensus
Probab=94.39 E-value=0.19 Score=55.62 Aligned_cols=11 Identities=18% Similarity=0.371 Sum_probs=5.0
Q ss_pred HHHHHhccCCC
Q psy93 203 LLELAFGVFGD 213 (503)
Q Consensus 203 ~L~~~Fs~~G~ 213 (503)
++..+...+|.
T Consensus 111 d~dkllas~~e 121 (1064)
T KOG1144|consen 111 DLDKLLASLGE 121 (1064)
T ss_pred chHHHhhhcCC
Confidence 34444444443
No 190
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.07 E-value=0.2 Score=44.45 Aligned_cols=73 Identities=10% Similarity=0.149 Sum_probs=55.8
Q ss_pred CCCcEEEEcCCCCCCC----HHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 111 ANNCRLYLGNIGGDIT----ENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~t----e~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
++-.||.|.=|..++. -..|...++.||+|.+|.+. .+-.|.|.|.+..+|-+|+.++.. ...|..+.+.|-.
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWqq 160 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQQ 160 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeeccc
Confidence 3456788877766553 33455668999999999875 355799999999999999998765 6677788887753
No 191
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.00 E-value=0.22 Score=38.04 Aligned_cols=53 Identities=15% Similarity=0.229 Sum_probs=41.8
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccC----CCeEEEEEecCCCceEEeeCCHHHHHHHHHHh
Q psy93 114 CRLYLGNIGGDITENDIIELFKPY----GETQELFINKEKMFGFIRMDYKHNADKAKAKL 169 (503)
Q Consensus 114 ~~l~V~nLp~~~te~~L~~~F~~~----G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l 169 (503)
..|+|.++. +++.++|+.+|..| ++. .|..+ +-..|-|.|.+.+.|.+|+..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~-~IEWI-dDtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPF-RIEWI-DDTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCc-eEEEe-cCCcEEEEECCHHHHHHHHHcC
Confidence 369999996 69999999999999 543 34333 3346899999999999998764
No 192
>KOG0163|consensus
Probab=93.91 E-value=0.6 Score=51.69 Aligned_cols=14 Identities=0% Similarity=0.062 Sum_probs=6.7
Q ss_pred CCHHHHHHHHHHhh
Q psy93 236 ARKPAAAQALRRCA 249 (503)
Q Consensus 236 ~s~e~A~kAl~~ln 249 (503)
.+++....-+.+.|
T Consensus 771 sDPe~m~~lv~kVn 784 (1259)
T KOG0163|consen 771 SDPETMLELVAKVN 784 (1259)
T ss_pred cCHHHHHHHHHHHH
Confidence 34555555555443
No 193
>KOG2591|consensus
Probab=93.87 E-value=0.082 Score=56.24 Aligned_cols=73 Identities=16% Similarity=0.218 Sum_probs=58.7
Q ss_pred CcCCCcEEEEcCCCCCCCHHHHHHhhcc--CCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCc--cccCceEEEE
Q psy93 109 KFANNCRLYLGNIGGDITENDIIELFKP--YGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGH--VLKGRSLKIR 182 (503)
Q Consensus 109 ~~~~~~~l~V~nLp~~~te~~L~~~F~~--~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~--~l~g~~l~V~ 182 (503)
.....|.|++.-||.++..++|+.||+. |-++.+|.+.-+.+ =||+|++..||+.|.+.|... +|.|++|..+
T Consensus 171 p~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-WyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 171 PNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-WYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred cCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-eEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 3345688999999999999999999975 77888998865444 599999999999999887543 6677776544
No 194
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.62 E-value=0.045 Score=51.10 Aligned_cols=74 Identities=16% Similarity=0.300 Sum_probs=48.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcc-CCCe---EEEEE-ecC-------CCceEEeeCCHHHHHHHHHHhCCccccCc--
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKP-YGET---QELFI-NKE-------KMFGFIRMDYKHNADKAKAKLDGHVLKGR-- 177 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~-~G~V---~~v~i-~~~-------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~-- 177 (503)
..+.|.|.+||+++|++++.+.++. ++.. ..+.- ... -.-|||.|.+.+++...+..++|..+.+.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4568999999999999999998887 6655 22221 111 23699999999999999999999866532
Q ss_pred ---eEEEEecc
Q psy93 178 ---SLKIRFAP 185 (503)
Q Consensus 178 ---~l~V~~a~ 185 (503)
+-.|++|+
T Consensus 86 ~~~~~~VE~Ap 96 (176)
T PF03467_consen 86 NEYPAVVEFAP 96 (176)
T ss_dssp -EEEEEEEE-S
T ss_pred CCcceeEEEcc
Confidence 33455554
No 195
>KOG4285|consensus
Probab=93.25 E-value=0.22 Score=49.45 Aligned_cols=69 Identities=17% Similarity=0.275 Sum_probs=55.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCce-EEEEe
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRS-LKIRF 183 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~-l~V~~ 183 (503)
.+-|-|-++|+. .-..|..+|++||.|++.....+-.+-+|.|.+.-+|.+||.. ||+.|.+.. |-|..
T Consensus 197 D~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 197 DTWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKP 266 (350)
T ss_pred cceEEEeccCcc-chhHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeee
Confidence 456777788764 4456778999999999998887778999999999999999974 898888744 34443
No 196
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.16 E-value=0.17 Score=47.45 Aligned_cols=61 Identities=20% Similarity=0.281 Sum_probs=48.6
Q ss_pred CHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhC--CccccCceEEEEeccc
Q psy93 126 TENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLD--GHVLKGRSLKIRFAPI 186 (503)
Q Consensus 126 te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~--g~~l~g~~l~V~~a~~ 186 (503)
..+.|+++|..|+.+..+.+.++=+-..|.|.+.++|.+|...|+ +..+.|..|+|.++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 457899999999999999988887889999999999999999999 8999999999988844
No 197
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=93.16 E-value=0.092 Score=43.09 Aligned_cols=56 Identities=14% Similarity=0.244 Sum_probs=42.2
Q ss_pred eEEeeCCHHHHHHHHHHhCCc--cccCceEEEEec---------------ccccceeccCcccccCHHHHHHHh
Q psy93 152 GFIRMDYKHNADKAKAKLDGH--VLKGRSLKIRFA---------------PINAAIKVKNLTSCVTNELLELAF 208 (503)
Q Consensus 152 aFV~F~~~e~A~~Ai~~l~g~--~l~g~~l~V~~a---------------~~~~~L~V~nLp~~~tee~L~~~F 208 (503)
|+|+|.++.-|++.++. ... .+.++.+.|... .+..+|.|+|||..+++++|.+.+
T Consensus 1 AlITF~e~~VA~~i~~~-~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKK-KKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhC-CEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 78999999999998864 222 444555555444 357889999999999999998765
No 198
>KOG2253|consensus
Probab=93.11 E-value=0.49 Score=51.65 Aligned_cols=58 Identities=19% Similarity=0.149 Sum_probs=51.6
Q ss_pred cccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhh
Q psy93 184 APINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCA 249 (503)
Q Consensus 184 a~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln 249 (503)
.++..++||+|+...++.+-++.+...||.|.++..+. |+|+.|.....+..|+..|+
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t 94 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLT 94 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhc
Confidence 34578999999999999999999999999998876643 99999999999999999876
No 199
>KOG2202|consensus
Probab=92.91 E-value=0.056 Score=52.43 Aligned_cols=66 Identities=23% Similarity=0.238 Sum_probs=49.5
Q ss_pred HHHHHHhc-cCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeecCCccc
Q psy93 202 ELLELAFG-VFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTD 271 (503)
Q Consensus 202 e~L~~~Fs-~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~~~~~~ 271 (503)
++|...|+ +||+|++++|-.+-.-.-.|-++|.|...++|++|+..|| +.++ .++||..+...-.+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~ln-nRw~---~G~pi~ae~~pvT~ 149 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLN-NRWY---NGRPIHAELSPVTD 149 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHc-Cccc---cCCcceeeecCcCc
Confidence 34444555 9999999877665333447789999999999999999998 4444 68999888755443
No 200
>KOG1996|consensus
Probab=92.72 E-value=0.28 Score=48.49 Aligned_cols=64 Identities=19% Similarity=0.200 Sum_probs=49.6
Q ss_pred HHHHHHHhccCCCeeeeEEEeCCCCC--ceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeecCC
Q psy93 201 NELLELAFGVFGDIERAIVIVDERGN--SKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLE 268 (503)
Q Consensus 201 ee~L~~~Fs~~G~V~~~~v~~d~~g~--skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~~~ 268 (503)
++++++.+.+||+|..|.|..++.-. ..---||+|...++|.+|+-.|| |.+| .++.+..-++.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~Vdln-GRyF---GGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLN-GRYF---GGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcC-Ccee---cceeeeheecc
Confidence 45688899999999999888764221 12246999999999999999997 7777 57777766654
No 201
>KOG3634|consensus
Probab=92.63 E-value=0.96 Score=45.49 Aligned_cols=56 Identities=27% Similarity=0.353 Sum_probs=25.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy93 306 FEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKERQAEELKRRDEEL 361 (503)
Q Consensus 306 ~e~~~r~k~l~e~ee~e~e~~Ree~~~rE~~rEr~r~E~E~~eRq~ee~r~reeE~ 361 (503)
.+|...++...+..+.+...+++.+..+.+.++....+...+.|+.+++|..++++
T Consensus 86 ~ey~~~~~~~rer~E~eL~eLkekq~~r~~eR~~eE~e~~~rkr~~e~RR~~~aee 141 (361)
T KOG3634|consen 86 GEYEDFDRIEREREEKELKELKEKQEKRKLEREEEEEELAERKRRIEERRREEAEE 141 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHhhhhchHHH
Confidence 34445555555555666666665555554443333332333333333333333333
No 202
>KOG3654|consensus
Probab=92.62 E-value=0.85 Score=48.20 Aligned_cols=71 Identities=25% Similarity=0.347 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHhH
Q psy93 313 KQLHELYEHETEMLR-KELAQREIDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQ 384 (503)
Q Consensus 313 k~l~e~ee~e~e~~R-ee~~~rE~~rEr~r~E~E~~eRq~ee~r~reeE~~r~rqee~~~~~~r~eEelrRrq 384 (503)
|.-++|......++. ++.+.+|.++.+|.+|-|++.+++|-+|.-+||+.+.++|.-+.++-|| |-+||.|
T Consensus 384 kaedema~kraallekqqrraeear~rkqqleae~e~kreearrkaeeer~~keee~arrefirq-ey~rrkq 455 (708)
T KOG3654|consen 384 KAEDEMAQKRAALLEKQQRRAEEARRRKQQLEAEKEQKREEARRKAEEERAPKEEEVARREFIRQ-EYERRKQ 455 (708)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhhhHHHHHHH-HHHHHHH
Confidence 334444443333333 3333345566677788888888877777777766554444333333343 3344444
No 203
>KOG0115|consensus
Probab=92.39 E-value=0.17 Score=49.21 Aligned_cols=62 Identities=23% Similarity=0.339 Sum_probs=51.6
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEe-----cCCCceEEeeCCHHHHHHHHHHhCC
Q psy93 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN-----KEKMFGFIRMDYKHNADKAKAKLDG 171 (503)
Q Consensus 110 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~-----~~kg~aFV~F~~~e~A~~Ai~~l~g 171 (503)
+.....|||.||+..++.+.|...|+.||+|....++ +..+-++|.|...-.|.+|+..+.-
T Consensus 28 fa~~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 28 FAMHAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred eeccceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhcc
Confidence 3334679999999999999999999999999876553 2356899999999999999988743
No 204
>KOG4574|consensus
Probab=91.77 E-value=0.11 Score=57.85 Aligned_cols=70 Identities=19% Similarity=0.286 Sum_probs=61.0
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCcccc--CceEEEEecc
Q psy93 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLK--GRSLKIRFAP 185 (503)
Q Consensus 116 l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~--g~~l~V~~a~ 185 (503)
.++-|.+-..+...|..+|+.||.|.+++..++-..|.|.|.+.+.|..|++.|+|+++. |-+.+|.+++
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 445555556788899999999999999999988899999999999999999999999654 7888888885
No 205
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=91.46 E-value=1.9 Score=42.86 Aligned_cols=136 Identities=15% Similarity=0.215 Sum_probs=89.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCC-------------CceEEeeCCHHHHHHHHH----HhCC--cc
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEK-------------MFGFIRMDYKHNADKAKA----KLDG--HV 173 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k-------------g~aFV~F~~~e~A~~Ai~----~l~g--~~ 173 (503)
++.|.+.|+..+++-..+...|-+||+|++|.++.+. ....+.|-+.+.+..... .|.. +.
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 4568899999999999999999999999999997654 688999999988654332 2221 24
Q ss_pred ccCceEEEEecc--------------------------------cccceeccCccccc-CHHHHHHHh---ccCC----C
Q psy93 174 LKGRSLKIRFAP--------------------------------INAAIKVKNLTSCV-TNELLELAF---GVFG----D 213 (503)
Q Consensus 174 l~g~~l~V~~a~--------------------------------~~~~L~V~nLp~~~-tee~L~~~F---s~~G----~ 213 (503)
+....|+|.+.. .++.|.|.= ...+ +++.+.+.+ ..-+ .
T Consensus 95 L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF-~~~~~~~dl~~~kL~fL~~~~n~RYV 173 (309)
T PF10567_consen 95 LKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEF-KDPVDKDDLIEKKLPFLKNSNNKRYV 173 (309)
T ss_pred cCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEe-cCccchhHHHHHhhhhhccCCCceEE
Confidence 555666665542 012233321 1222 233333322 2222 2
Q ss_pred eeeeEEEeCC---CCCceeEEEEEeCCHHHHHHHHHHhh
Q psy93 214 IERAIVIVDE---RGNSKCEGIVEFARKPAAAQALRRCA 249 (503)
Q Consensus 214 V~~~~v~~d~---~g~skg~gfV~F~s~e~A~kAl~~ln 249 (503)
|+++.++... ..-++.||+++|-+...|...+..|.
T Consensus 174 lEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 174 LESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred EEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 5566666432 33457799999999999999998876
No 206
>KOG3152|consensus
Probab=91.39 E-value=1.3 Score=43.14 Aligned_cols=65 Identities=18% Similarity=0.311 Sum_probs=53.4
Q ss_pred ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCC-C--------CCc----eeEEEEEeCCHHHHHHHHHHhhCC
Q psy93 187 NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-R--------GNS----KCEGIVEFARKPAAAQALRRCAEG 251 (503)
Q Consensus 187 ~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~-~--------g~s----kg~gfV~F~s~e~A~kAl~~ln~g 251 (503)
...||+++||+.+.-.-|+++|+.||.|-.|.+.... . +.+ -..|.|+|.+...|..+...||+.
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 4678999999999999999999999999999886542 1 111 234789999999999999999833
No 207
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=90.28 E-value=0.91 Score=34.72 Aligned_cols=54 Identities=20% Similarity=0.218 Sum_probs=41.6
Q ss_pred cceeccCcccccCHHHHHHHhccC---CCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHh
Q psy93 188 AAIKVKNLTSCVTNELLELAFGVF---GDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRC 248 (503)
Q Consensus 188 ~~L~V~nLp~~~tee~L~~~Fs~~---G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~l 248 (503)
..|+|.++. .++.++|+.+|..| .....+..+-|. .|-|.|.+.+.|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 568888875 47888999999998 124456666652 5889999999999999764
No 208
>KOG2193|consensus
Probab=90.27 E-value=0.21 Score=51.59 Aligned_cols=75 Identities=19% Similarity=0.088 Sum_probs=56.6
Q ss_pred cceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeecC
Q psy93 188 AAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPL 267 (503)
Q Consensus 188 ~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~~ 267 (503)
+.||+.||.+.++..+|..+|...-.-.+-.++.. .+|+||.+.+...|.+|++.++.+..+ .++.+.++..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-----~gyafvd~pdq~wa~kaie~~sgk~el---qGkr~e~~~s 73 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-----SGYAFVDCPDQQWANKAIETLSGKVEL---QGKRQEVEHS 73 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-----cceeeccCCchhhhhhhHHhhchhhhh---cCceeeccch
Confidence 46899999999999999999976532222233333 679999999999999999999855544 6777777665
Q ss_pred Ccc
Q psy93 268 ELT 270 (503)
Q Consensus 268 ~~~ 270 (503)
.++
T Consensus 74 v~k 76 (584)
T KOG2193|consen 74 VPK 76 (584)
T ss_pred hhH
Confidence 444
No 209
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=90.21 E-value=1.6 Score=37.42 Aligned_cols=63 Identities=11% Similarity=0.175 Sum_probs=47.3
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCC-CeEEEEEecC----CCceEEeeCCHHHHHHHHHHhCCccccC
Q psy93 114 CRLYLGNIGGDITENDIIELFKPYG-ETQELFINKE----KMFGFIRMDYKHNADKAKAKLDGHVLKG 176 (503)
Q Consensus 114 ~~l~V~nLp~~~te~~L~~~F~~~G-~V~~v~i~~~----kg~aFV~F~~~e~A~~Ai~~l~g~~l~g 176 (503)
+.+.+...|..++.++|..+.+.+- .|..++|+++ +-.+++.|.+.++|......+||+.+..
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3445555566666777777777665 5667777754 4479999999999999999999997764
No 210
>KOG2318|consensus
Probab=90.12 E-value=1.3 Score=47.65 Aligned_cols=74 Identities=24% Similarity=0.426 Sum_probs=59.3
Q ss_pred CCcEEEEcCCCCC-CCHHHHHHhhccC----CCeEEEEEecC--------------------------------------
Q psy93 112 NNCRLYLGNIGGD-ITENDIIELFKPY----GETQELFINKE-------------------------------------- 148 (503)
Q Consensus 112 ~~~~l~V~nLp~~-~te~~L~~~F~~~----G~V~~v~i~~~-------------------------------------- 148 (503)
.+.+|-|.||.++ +...+|..+|+.| |.|.+|.|.++
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 4578999999975 7889999998866 58999998311
Q ss_pred --------------C-CceEEeeCCHHHHHHHHHHhCCcccc--CceEEEEecc
Q psy93 149 --------------K-MFGFIRMDYKHNADKAKAKLDGHVLK--GRSLKIRFAP 185 (503)
Q Consensus 149 --------------k-g~aFV~F~~~e~A~~Ai~~l~g~~l~--g~~l~V~~a~ 185 (503)
+ -||.|+|.+.+.|.+....|+|+.|. +..|-++|.+
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 0 27999999999999999999999887 4556666654
No 211
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=89.67 E-value=0.94 Score=40.69 Aligned_cols=56 Identities=20% Similarity=0.182 Sum_probs=41.6
Q ss_pred HHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeecCCcc
Q psy93 203 LLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELT 270 (503)
Q Consensus 203 ~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~~~~~ 270 (503)
+|.+.|..||.|.-++++-+ .-+|+|.+..+|.+|+.. ++..+ +++.+.|....+.
T Consensus 52 ~ll~~~~~~GevvLvRfv~~-------~mwVTF~dg~sALaals~--dg~~v---~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD-------TMWVTFRDGQSALAALSL--DGIQV---NGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT-------CEEEEESSCHHHHHHHHG--CCSEE---TTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEeCC-------eEEEEECccHHHHHHHcc--CCcEE---CCEEEEEEeCCcc
Confidence 67788999999887777654 579999999999999986 46666 6888888765544
No 212
>KOG3634|consensus
Probab=89.33 E-value=4.5 Score=40.86 Aligned_cols=70 Identities=34% Similarity=0.376 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHhHhhhhH
Q psy93 320 EHETEMLRKELAQREIDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSM 389 (503)
Q Consensus 320 e~e~e~~Ree~~~rE~~rEr~r~E~E~~eRq~ee~r~reeE~~r~rqee~~~~~~r~eEelrRrq~E~~~ 389 (503)
..+++.+.++|..-...++..+++++..+++..+++++.+++.+++.++++.+-.+.+++..|..+|+.+
T Consensus 93 ~~~rer~E~eL~eLkekq~~r~~eR~~eE~e~~~rkr~~e~RR~~~aeerk~r~~k~de~r~r~~Eek~R 162 (361)
T KOG3634|consen 93 RIEREREEKELKELKEKQEKRKLEREEEEEELAERKRRIEERRREEAEERKIREAKEDERRIRLEEEKSR 162 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444333444455555555555555555555443322222222223333334444444443
No 213
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=87.55 E-value=0.8 Score=36.22 Aligned_cols=66 Identities=23% Similarity=0.405 Sum_probs=39.6
Q ss_pred EEEEcCC--CCCCCHHHHHHhhccCCCe-----EEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEec
Q psy93 115 RLYLGNI--GGDITENDIIELFKPYGET-----QELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184 (503)
Q Consensus 115 ~l~V~nL--p~~~te~~L~~~F~~~G~V-----~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a 184 (503)
+|||. + -..++..+|..++...+.| -.|.|. ..|+||+-... .|..++..|++..+.|++|.|+.|
T Consensus 2 rl~in-~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~--~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 2 RLFIN-VGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF--DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp EEEES--SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE---SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred EEEEE-cccccCCCHHHHHHHHHhccCCCHHhEEEEEEe--eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45663 3 2468899999998877554 455553 56899998874 788899999999999999999864
No 214
>KOG2412|consensus
Probab=87.21 E-value=4.5 Score=43.54 Aligned_cols=16 Identities=6% Similarity=0.001 Sum_probs=9.0
Q ss_pred CCCCCCHHHHHHhhcc
Q psy93 121 IGGDITENDIIELFKP 136 (503)
Q Consensus 121 Lp~~~te~~L~~~F~~ 136 (503)
.+++++-.||...|+.
T Consensus 20 ~epn~~fpdl~a~~as 35 (591)
T KOG2412|consen 20 PEPNWNFPDLVAEIAS 35 (591)
T ss_pred CCCCCCchhHHHHhhh
Confidence 3455666666666544
No 215
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=86.29 E-value=2.2 Score=38.13 Aligned_cols=72 Identities=14% Similarity=0.098 Sum_probs=50.3
Q ss_pred ccceeccC----cccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeE
Q psy93 187 NAAIKVKN----LTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPV 262 (503)
Q Consensus 187 ~~~L~V~n----Lp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl 262 (503)
-.+|.|.- +.+.-+-..|...++.||+|.++.+.- +-.|+|.|.+..+|-+|+.++... ..+..+
T Consensus 86 MsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG------rqsavVvF~d~~SAC~Av~Af~s~-----~pgtm~ 154 (166)
T PF15023_consen 86 MSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG------RQSAVVVFKDITSACKAVSAFQSR-----APGTMF 154 (166)
T ss_pred ceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC------CceEEEEehhhHHHHHHHHhhcCC-----CCCceE
Confidence 34555544 444444456777889999999987643 447999999999999999998622 235556
Q ss_pred EeecCCc
Q psy93 263 IVEPLEL 269 (503)
Q Consensus 263 ~V~~~~~ 269 (503)
.+.|...
T Consensus 155 qCsWqqr 161 (166)
T PF15023_consen 155 QCSWQQR 161 (166)
T ss_pred Eeecccc
Confidence 6666543
No 216
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=86.21 E-value=2.2 Score=34.59 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=39.1
Q ss_pred ceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhh
Q psy93 189 AIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCA 249 (503)
Q Consensus 189 ~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln 249 (503)
..+|. .|......||.++|+.||.|. |..+.| ..|||.....+.|..|+..++
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCEE-EEEECT------TEEEEEECCCHHHHHHHHHHT
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC------CcEEEEeecHHHHHHHHHHhc
Confidence 34444 889999999999999999975 333433 279999999999999999886
No 217
>KOG3054|consensus
Probab=86.17 E-value=7.6 Score=37.65 Aligned_cols=17 Identities=12% Similarity=0.388 Sum_probs=8.4
Q ss_pred hhHHHHHHhHhhhhHHH
Q psy93 375 QQEEDLRRRQNDNSMFL 391 (503)
Q Consensus 375 r~eEelrRrq~E~~~~~ 391 (503)
..+||..|+..|.++.|
T Consensus 163 kakEE~arkeheEylkm 179 (299)
T KOG3054|consen 163 KAKEEEARKEHEEYLKM 179 (299)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344445555555555
No 218
>PTZ00146 fibrillarin; Provisional
Probab=85.73 E-value=1.4 Score=44.45 Aligned_cols=15 Identities=13% Similarity=0.000 Sum_probs=7.2
Q ss_pred EEEEEeCCHHHHHHH
Q psy93 230 EGIVEFARKPAAAQA 244 (503)
Q Consensus 230 ~gfV~F~s~e~A~kA 244 (503)
+.|+....+..+..+
T Consensus 205 vV~~Dva~pdq~~il 219 (293)
T PTZ00146 205 VIFADVAQPDQARIV 219 (293)
T ss_pred EEEEeCCCcchHHHH
Confidence 455555555444333
No 219
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=85.09 E-value=2.6 Score=39.36 Aligned_cols=80 Identities=14% Similarity=0.118 Sum_probs=48.0
Q ss_pred ccceeccCcccccCHHHHHHHhcc-CCCee---eeEEEeC--C-CCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCC
Q psy93 187 NAAIKVKNLTSCVTNELLELAFGV-FGDIE---RAIVIVD--E-RGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSL 259 (503)
Q Consensus 187 ~~~L~V~nLp~~~tee~L~~~Fs~-~G~V~---~~~v~~d--~-~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~ 259 (503)
..+|.|.+||+.+|++++.+.++. ++... .+.-... . ......-|||.|.+.+++..-+..++ ++.+....+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~-g~~F~D~kg 85 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFD-GHVFVDSKG 85 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCT-TEEEE-TTS
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcC-CcEEECCCC
Confidence 458999999999999999987776 66552 2221122 1 11224569999999999999999986 665654444
Q ss_pred C--eEEeecC
Q psy93 260 R--PVIVEPL 267 (503)
Q Consensus 260 r--pl~V~~~ 267 (503)
. +..|+.+
T Consensus 86 ~~~~~~VE~A 95 (176)
T PF03467_consen 86 NEYPAVVEFA 95 (176)
T ss_dssp -EEEEEEEE-
T ss_pred CCcceeEEEc
Confidence 3 3444443
No 220
>KOG3973|consensus
Probab=83.17 E-value=2 Score=43.58 Aligned_cols=57 Identities=35% Similarity=0.572 Sum_probs=30.0
Q ss_pred ccCCCCCCCCCCCCCCCcCCccchhccCCCCccCCCCCcCCCCC----CCCCCCCCCCCCC
Q psy93 444 DFDQGGRSGGGGGRRNDSASSGWSRREGGAGRWGPSVDHGSRRG----GSGGGGPTDYQPK 500 (503)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 500 (503)
.||++|+-|||-|.--++.|-.----|++.+|-|-+++||.|+| +++|||+.-+||.
T Consensus 328 ~~~~~ggrgggkg~f~~~~~~~~~~~eqgg~Rgg~Gg~~gGrGgGRGggG~GGGggyqqp~ 388 (465)
T KOG3973|consen 328 TFDRQGGRGGGKGTFDRPKTHEEQVLEQGGSRGGSGGNWGGRGGGRGGGGRGGGGGYQQPQ 388 (465)
T ss_pred CCCCCCCcCCCCCCCcCccccccchhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCch
Confidence 35655555555444444445444444566666666666654433 3344555555663
No 221
>KOG2891|consensus
Probab=82.55 E-value=21 Score=35.26 Aligned_cols=20 Identities=25% Similarity=0.572 Sum_probs=11.6
Q ss_pred CHHHHHHhhccCCCeEEEEE
Q psy93 126 TENDIIELFKPYGETQELFI 145 (503)
Q Consensus 126 te~~L~~~F~~~G~V~~v~i 145 (503)
+++-|+..|..||.|..|.|
T Consensus 174 se~rlr~a~eafg~ir~vdi 193 (445)
T KOG2891|consen 174 SEDRLRKAFEAFGEIRNVDI 193 (445)
T ss_pred hHHHHHHHHHHhccceecCC
Confidence 34556666666666655555
No 222
>KOG4364|consensus
Probab=81.74 E-value=18 Score=39.96 Aligned_cols=12 Identities=0% Similarity=-0.155 Sum_probs=5.5
Q ss_pred CCCCCCCCccCC
Q psy93 402 GGYGSPGQAYGN 413 (503)
Q Consensus 402 ~~~~~~~~~~~~ 413 (503)
++--+....|-|
T Consensus 390 ~~a~~s~~~f~p 401 (811)
T KOG4364|consen 390 CEATVSDIRFEP 401 (811)
T ss_pred cccccccccccc
Confidence 444444444444
No 223
>KOG2072|consensus
Probab=81.67 E-value=21 Score=40.60 Aligned_cols=15 Identities=7% Similarity=-0.082 Sum_probs=7.4
Q ss_pred eEEeeCCHHHHHHHH
Q psy93 152 GFIRMDYKHNADKAK 166 (503)
Q Consensus 152 aFV~F~~~e~A~~Ai 166 (503)
-+|.|-+.-+.++++
T Consensus 455 ~La~F~~~~~lEk~~ 469 (988)
T KOG2072|consen 455 KLAPFFSAFELEKLL 469 (988)
T ss_pred HHHhhcCHHHHHHHH
Confidence 344555555555443
No 224
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=80.03 E-value=6.5 Score=30.47 Aligned_cols=55 Identities=13% Similarity=0.213 Sum_probs=43.1
Q ss_pred CCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEE
Q psy93 124 DITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKI 181 (503)
Q Consensus 124 ~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V 181 (503)
.++.++|+..+..|.-. .|. .++.=-||.|.+..+|++|....+++.+....|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~-~I~--~d~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD-RIR--DDRTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc-eEE--ecCCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 47889999999999642 233 34444689999999999999999999887766654
No 225
>KOG2002|consensus
Probab=79.89 E-value=16 Score=42.29 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=13.8
Q ss_pred HHHHhhHHHHHHhHhhhhHHH
Q psy93 371 LRLAQQEEDLRRRQNDNSMFL 391 (503)
Q Consensus 371 ~~~~r~eEelrRrq~E~~~~~ 391 (503)
+.+++++++.++++++-+++-
T Consensus 868 ~~l~~qr~e~~e~tk~~~~~~ 888 (1018)
T KOG2002|consen 868 EKLEKQREEYRERTKEILKLP 888 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 446677777777777655554
No 226
>KOG0804|consensus
Probab=79.28 E-value=92 Score=33.14 Aligned_cols=64 Identities=13% Similarity=0.299 Sum_probs=55.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCC-CeEEEEEecC----CCceEEeeCCHHHHHHHHHHhCCccccC
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPYG-ETQELFINKE----KMFGFIRMDYKHNADKAKAKLDGHVLKG 176 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~G-~V~~v~i~~~----kg~aFV~F~~~e~A~~Ai~~l~g~~l~g 176 (503)
++.|+|--+|..+|..||..|+..+- .|..|+|+++ +-.++|.|.+.++|......+||..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 78899999999999999999988765 6788888764 3469999999999999999999997764
No 227
>KOG4285|consensus
Probab=78.14 E-value=4.4 Score=40.50 Aligned_cols=57 Identities=12% Similarity=0.221 Sum_probs=41.4
Q ss_pred eeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeee
Q psy93 190 IKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFF 254 (503)
Q Consensus 190 L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~ 254 (503)
|-|-+.|+.-. .-|..+|++||.|.+..... + -.+-+|.|.+..+|.+||.+ +++++
T Consensus 200 VTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~--n---gNwMhirYssr~~A~KALsk--ng~ii 256 (350)
T KOG4285|consen 200 VTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPS--N---GNWMHIRYSSRTHAQKALSK--NGTII 256 (350)
T ss_pred EEEeccCccch-hHHHHHHHhhCeeeeeecCC--C---CceEEEEecchhHHHHhhhh--cCeee
Confidence 44445555432 35678999999998754432 2 44899999999999999987 57766
No 228
>PLN03086 PRLI-interacting factor K; Provisional
Probab=78.09 E-value=16 Score=40.17 Aligned_cols=11 Identities=27% Similarity=0.266 Sum_probs=5.5
Q ss_pred HHHHHhhcCCC
Q psy93 390 FLVEQQQGRGG 400 (503)
Q Consensus 390 ~~q~~~~~~~~ 400 (503)
.|++.+...+|
T Consensus 65 ~~~~~~~~~~g 75 (567)
T PLN03086 65 QMQESLQAGRG 75 (567)
T ss_pred HHHHHHHcCCC
Confidence 55555543344
No 229
>KOG4019|consensus
Probab=78.00 E-value=1.7 Score=40.32 Aligned_cols=75 Identities=19% Similarity=0.225 Sum_probs=59.8
Q ss_pred cEEEEcCCCCCCC-----HHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCc-eEEEEecccc
Q psy93 114 CRLYLGNIGGDIT-----ENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGR-SLKIRFAPIN 187 (503)
Q Consensus 114 ~~l~V~nLp~~~t-----e~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~-~l~V~~a~~~ 187 (503)
+++++.+|+..+- ......+|..|-+.....+.++.++.-|.|.+++.|..|...++...|.++ .++.-++.+.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCC
Confidence 4688888886642 234466788787777777778888999999999999999999999999988 8888888664
Q ss_pred c
Q psy93 188 A 188 (503)
Q Consensus 188 ~ 188 (503)
.
T Consensus 91 ~ 91 (193)
T KOG4019|consen 91 H 91 (193)
T ss_pred C
Confidence 3
No 230
>KOG4574|consensus
Probab=75.48 E-value=2 Score=48.31 Aligned_cols=72 Identities=18% Similarity=0.123 Sum_probs=54.8
Q ss_pred eccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeecCCc
Q psy93 191 KVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLEL 269 (503)
Q Consensus 191 ~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~~~~ 269 (503)
.+.|.+-.++...|..+|++||.|.++..+++ -..++|.|.+.+.|..|+++|.+.... ..+-|..|.+++.
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-----~N~alvs~~s~~sai~a~dAl~gkevs--~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWTLRD-----LNMALVSFSSVESAILALDALQGKEVS--VTGAPSRVSFAKT 373 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhheeccc-----ccchhhhhHHHHHHHHhhhhhcCCccc--ccCCceeEEeccc
Confidence 34455557778889999999999999988887 457999999999999999999744333 2355566655443
No 231
>KOG3973|consensus
Probab=74.42 E-value=4.3 Score=41.21 Aligned_cols=11 Identities=55% Similarity=0.601 Sum_probs=6.2
Q ss_pred HHHHHHhhhcc
Q psy93 12 VNQLYQARLRS 22 (503)
Q Consensus 12 ~~~~~~~~~~~ 22 (503)
-||+|+.++.+
T Consensus 395 qn~~ye~~~~~ 405 (465)
T KOG3973|consen 395 QNQSYEQRDRS 405 (465)
T ss_pred cccccccCCcC
Confidence 35666665544
No 232
>PLN03086 PRLI-interacting factor K; Provisional
Probab=73.95 E-value=17 Score=40.13 Aligned_cols=11 Identities=36% Similarity=0.383 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q psy93 336 DRERQKAEWEM 346 (503)
Q Consensus 336 ~rEr~r~E~E~ 346 (503)
++.|.|+++|+
T Consensus 21 ~~~~~~~~~~~ 31 (567)
T PLN03086 21 QRAKLKLERER 31 (567)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 233
>COG4907 Predicted membrane protein [Function unknown]
Probab=73.45 E-value=2.9 Score=44.03 Aligned_cols=12 Identities=17% Similarity=0.213 Sum_probs=7.3
Q ss_pred HHHHHHHHhhhc
Q psy93 10 QEVNQLYQARLR 21 (503)
Q Consensus 10 ~~~~~~~~~~~~ 21 (503)
.+|-++++..+.
T Consensus 526 dkVvkam~~~~~ 537 (595)
T COG4907 526 DKVVKAMRKALD 537 (595)
T ss_pred HHHHHHHHHhCc
Confidence 456666666554
No 234
>KOG2135|consensus
Probab=72.30 E-value=1.9 Score=45.41 Aligned_cols=71 Identities=20% Similarity=0.218 Sum_probs=52.9
Q ss_pred ceeccCccccc-CHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeecC
Q psy93 189 AIKVKNLTSCV-TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPL 267 (503)
Q Consensus 189 ~L~V~nLp~~~-tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~~ 267 (503)
.|-+...|..+ +..+|...|.+||+|..|.|-.. .--|+|+|.+..+|-+|... ++..| +++++.|.|.
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-----~~~a~vTF~t~aeag~a~~s--~~avl---nnr~iKl~wh 443 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-----SLHAVVTFKTRAEAGEAYAS--HGAVL---NNRFIKLFWH 443 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhcCccccccccCc-----hhhheeeeeccccccchhcc--cccee---cCceeEEEEe
Confidence 34444455443 45789999999999999987543 33689999999999777654 46666 7889999887
Q ss_pred Cc
Q psy93 268 EL 269 (503)
Q Consensus 268 ~~ 269 (503)
..
T Consensus 444 np 445 (526)
T KOG2135|consen 444 NP 445 (526)
T ss_pred cC
Confidence 55
No 235
>KOG3878|consensus
Probab=72.08 E-value=37 Score=34.48 Aligned_cols=11 Identities=27% Similarity=0.637 Sum_probs=5.1
Q ss_pred hhhhHHHHHHH
Q psy93 309 GSRWKQLHELY 319 (503)
Q Consensus 309 ~~r~k~l~e~e 319 (503)
...|..|-++.
T Consensus 92 ~~~W~~LG~~s 102 (469)
T KOG3878|consen 92 QQHWQLLGEIS 102 (469)
T ss_pred HHHHHHHhccc
Confidence 33455554444
No 236
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=70.15 E-value=7.5 Score=39.55 Aligned_cols=56 Identities=20% Similarity=0.185 Sum_probs=44.9
Q ss_pred eEEeeCCHHHHHHHHHHhCCccccCceEEEEecccccceeccCcccccCHHHHHHHhc
Q psy93 152 GFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFG 209 (503)
Q Consensus 152 aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~~~~L~V~nLp~~~tee~L~~~Fs 209 (503)
|||+|.+..+|..|++.+.... ...+.|..|+....|.-.||.....+..++.++.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDDIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcccccccccCCChHHHHHHHHHH
Confidence 7999999999999998655443 3667999999999999999977776766665554
No 237
>KOG2068|consensus
Probab=68.19 E-value=2.8 Score=42.47 Aligned_cols=66 Identities=17% Similarity=0.293 Sum_probs=48.7
Q ss_pred cceeccCcccccCHHHHH---HHhccCCCeeeeEEEeCCC----CCceeEEEEEeCCHHHHHHHHHHhhCCeee
Q psy93 188 AAIKVKNLTSCVTNELLE---LAFGVFGDIERAIVIVDER----GNSKCEGIVEFARKPAAAQALRRCAEGCFF 254 (503)
Q Consensus 188 ~~L~V~nLp~~~tee~L~---~~Fs~~G~V~~~~v~~d~~----g~skg~gfV~F~s~e~A~kAl~~ln~g~~~ 254 (503)
..+||-.|+..+.++.+. +.|.+||.|..+.+..+.. .....-++|+|...++|..||...+ +..+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~-g~~~ 150 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVD-GFVD 150 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhh-hHHh
Confidence 556788888776665543 5688999999988877642 1123348999999999999999985 6554
No 238
>KOG1596|consensus
Probab=67.28 E-value=15 Score=36.06 Aligned_cols=9 Identities=33% Similarity=0.051 Sum_probs=4.7
Q ss_pred EEEEeCCHH
Q psy93 231 GIVEFARKP 239 (503)
Q Consensus 231 gfV~F~s~e 239 (503)
.=|.|++..
T Consensus 227 VDvIFaDva 235 (317)
T KOG1596|consen 227 VDVIFADVA 235 (317)
T ss_pred EEEEeccCC
Confidence 345666643
No 239
>PF05914 RIB43A: RIB43A; InterPro: IPR008805 This family consists of several RIB43A-like eukaryotic proteins. Ciliary and flagellar microtubules contain a specialised set of protofilaments, termed ribbons, that are composed of tubulin and several associated proteins. RIB43A was first characterised in the unicellular biflagellate, Chlamydomonas reinhardtii although highly related sequences are present in several higher eukaryotes including humans. The function of this protein is unknown although the structure of RIB43A and its association with the specialised protofilament ribbons and with basal bodies is relevant to the proposed role of ribbons in forming and stabilising doublet and triplet microtubules and in organising their three-dimensional structure. Human RIB43A homologues could represent a structural requirement in centriole replication in dividing cells [].
Probab=65.28 E-value=84 Score=33.06 Aligned_cols=82 Identities=22% Similarity=0.372 Sum_probs=35.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHhHhhhh
Q psy93 309 GSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNS 388 (503)
Q Consensus 309 ~~r~k~l~e~ee~e~e~~Ree~~~rE~~rEr~r~E~E~~eRq~ee~r~reeE~~r~rqee~~~~~~r~eEelrRrq~E~~ 388 (503)
++....+..+...+.....+..+.++.++++. .+|+.............+.++.++..+++..+...-..|...|..+.
T Consensus 276 GMs~eQl~~i~~~Q~~Q~~Ek~r~r~~E~~~e-~~w~~~~~~~~ra~~~~Erq~~r~~~e~r~~l~~~N~~LA~eQk~~~ 354 (379)
T PF05914_consen 276 GMSPEQLEEIRKEQEQQREEKQRRREEEKERE-AEWDRQRIQMARAALLLERQQQRQRRELRRQLDEENQQLAEEQKAQQ 354 (379)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444444444444333333 33666544333332223323233333444444444444444444433
Q ss_pred HHH
Q psy93 389 MFL 391 (503)
Q Consensus 389 ~~~ 391 (503)
.|+
T Consensus 355 ~~l 357 (379)
T PF05914_consen 355 KYL 357 (379)
T ss_pred HHH
Confidence 444
No 240
>KOG0804|consensus
Probab=65.06 E-value=15 Score=38.70 Aligned_cols=66 Identities=14% Similarity=0.140 Sum_probs=54.0
Q ss_pred ccceeccCcccccCHHHHHHHhccCC-CeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCee
Q psy93 187 NAAIKVKNLTSCVTNELLELAFGVFG-DIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCF 253 (503)
Q Consensus 187 ~~~L~V~nLp~~~tee~L~~~Fs~~G-~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~ 253 (503)
.+.|+|-.+|..++-.||..++..+- .|..++|++|.... +-..+|.|.+.++|..-...+|++.|
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pn-rymvLIkFr~q~da~~Fy~efNGk~F 140 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPN-RYMVLIKFRDQADADTFYEEFNGKQF 140 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCc-eEEEEEEeccchhHHHHHHHcCCCcC
Confidence 67788889999999999999888765 57889999974332 44679999999999999999985544
No 241
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=64.98 E-value=5.5 Score=35.54 Aligned_cols=103 Identities=10% Similarity=0.053 Sum_probs=67.8
Q ss_pred EEEcCCC--CCCCHHHHHHhh----ccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc---
Q psy93 116 LYLGNIG--GDITENDIIELF----KPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI--- 186 (503)
Q Consensus 116 l~V~nLp--~~~te~~L~~~F----~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~--- 186 (503)
..|+.+. .+++-..|...+ ...+.+.-..+ ..++..+.|.+.+++.+++.. ....+.+..|.+....+
T Consensus 18 ~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l--~~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~~~~~ 94 (153)
T PF14111_consen 18 CLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL--GDNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWSPDFN 94 (153)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe--CCCeEEEEEEeccceeEEEec-ccccccccchhhhhhccccc
Confidence 3455442 235555555444 44454444444 568999999999999988762 33456677776654432
Q ss_pred ---------ccceeccCcccc-cCHHHHHHHhccCCCeeeeEEEe
Q psy93 187 ---------NAAIKVKNLTSC-VTNELLELAFGVFGDIERAIVIV 221 (503)
Q Consensus 187 ---------~~~L~V~nLp~~-~tee~L~~~Fs~~G~V~~~~v~~ 221 (503)
..-|.|.+||.. .+++.+..+.+.+|++..+...+
T Consensus 95 ~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 95 PSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred ccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 122567799976 67788999999999998876544
No 242
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=61.39 E-value=36 Score=34.84 Aligned_cols=20 Identities=30% Similarity=0.184 Sum_probs=10.5
Q ss_pred HHHHHhccCCCeeeeEEEeC
Q psy93 203 LLELAFGVFGDIERAIVIVD 222 (503)
Q Consensus 203 ~L~~~Fs~~G~V~~~~v~~d 222 (503)
.|.+++..++......+++|
T Consensus 180 ~~~~~l~~~~~~l~~i~~TD 199 (321)
T PF07946_consen 180 ELIKALNKAGDYLEYIHFTD 199 (321)
T ss_pred HHHHHHHhhhhheeEEEEEC
Confidence 35555555555544444444
No 243
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=61.13 E-value=20 Score=35.95 Aligned_cols=61 Identities=13% Similarity=0.211 Sum_probs=49.4
Q ss_pred ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCC--------CCCceeEEEEEeCCHHHHHHHHHH
Q psy93 187 NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE--------RGNSKCEGIVEFARKPAAAQALRR 247 (503)
Q Consensus 187 ~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~--------~g~skg~gfV~F~s~e~A~kAl~~ 247 (503)
++.|.+.|+..+++-..+...|.+||.|++|.++.+. .-+......+.|-+.+.|..-...
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNn 83 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNN 83 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHH
Confidence 5678999999999999999999999999999998764 223346789999999887655433
No 244
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=59.83 E-value=75 Score=27.21 Aligned_cols=71 Identities=15% Similarity=0.109 Sum_probs=47.0
Q ss_pred CcccccCHHHHHHHhccCC-CeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeec
Q psy93 194 NLTSCVTNELLELAFGVFG-DIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEP 266 (503)
Q Consensus 194 nLp~~~tee~L~~~Fs~~G-~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~ 266 (503)
..|..++.++|..+.+.+- .|..++|++|... ++-.++++|.+..+|..-...+|++.|- ......++|-+
T Consensus 20 vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-nrymVLikF~~~~~Ad~Fy~~fNGk~Fn-slEpE~Chvvf 91 (110)
T PF07576_consen 20 VPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-NRYMVLIKFRDQESADEFYEEFNGKPFN-SLEPETCHVVF 91 (110)
T ss_pred eCcccccHHHHHHhhhcccccEEEEEEeeCCCC-ceEEEEEEECCHHHHHHHHHHhCCCccC-CCCCceeEEEE
Confidence 3444556667766666664 5667788887543 4667899999999999999999844442 22333344443
No 245
>KOG3088|consensus
Probab=59.69 E-value=13 Score=37.12 Aligned_cols=10 Identities=40% Similarity=0.820 Sum_probs=4.4
Q ss_pred hHHHHHHhHh
Q psy93 376 QEEDLRRRQN 385 (503)
Q Consensus 376 ~eEelrRrq~ 385 (503)
.++||.|||+
T Consensus 79 ke~ELdRREr 88 (313)
T KOG3088|consen 79 KEQELDRRER 88 (313)
T ss_pred HHHHHhHHHH
Confidence 3344444443
No 246
>KOG2318|consensus
Probab=58.46 E-value=25 Score=38.31 Aligned_cols=80 Identities=21% Similarity=0.220 Sum_probs=53.1
Q ss_pred ccccceeccCcccc-cCHHHHHHHhccC----CCeeeeEEEeCC-----------CCC----------------------
Q psy93 185 PINAAIKVKNLTSC-VTNELLELAFGVF----GDIERAIVIVDE-----------RGN---------------------- 226 (503)
Q Consensus 185 ~~~~~L~V~nLp~~-~tee~L~~~Fs~~----G~V~~~~v~~d~-----------~g~---------------------- 226 (503)
..+++|-|-|+.+. +..++|.-+|+.| |.|.+|.|.... .|.
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 34667777888765 7777887777765 467777665432 111
Q ss_pred ---------------ceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeec
Q psy93 227 ---------------SKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEP 266 (503)
Q Consensus 227 ---------------skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~ 266 (503)
---||+|+|.+.+.|.+....|+ |..+.. ....+-+.+
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CD-G~EfEs-S~~~~DLRF 304 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECD-GIEFES-SANKLDLRF 304 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcC-cceecc-ccceeeeee
Confidence 01279999999999999999996 766633 333344443
No 247
>KOG3262|consensus
Probab=57.89 E-value=25 Score=32.76 Aligned_cols=14 Identities=21% Similarity=0.237 Sum_probs=8.0
Q ss_pred eEEeeCCHHHHHHH
Q psy93 152 GFIRMDYKHNADKA 165 (503)
Q Consensus 152 aFV~F~~~e~A~~A 165 (503)
|=|-+++.+..=+.
T Consensus 81 APIylenk~qIGKV 94 (215)
T KOG3262|consen 81 APIYLENKEQIGKV 94 (215)
T ss_pred Cceeecchhhhcch
Confidence 55666666655443
No 248
>KOG3654|consensus
Probab=57.79 E-value=68 Score=34.53 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=11.5
Q ss_pred HhhHHHHHHhHhhhhHHHHHHh
Q psy93 374 AQQEEDLRRRQNDNSMFLVEQQ 395 (503)
Q Consensus 374 ~r~eEelrRrq~E~~~~~q~~~ 395 (503)
.+.+||..||.-=++.||.+.|
T Consensus 434 ~~keee~arrefirqey~rrkq 455 (708)
T KOG3654|consen 434 APKEEEVARREFIRQEYERRKQ 455 (708)
T ss_pred cchhhhhhHHHHHHHHHHHHHH
Confidence 3444555555555555665544
No 249
>KOG1308|consensus
Probab=57.55 E-value=45 Score=34.36 Aligned_cols=9 Identities=33% Similarity=0.383 Sum_probs=5.1
Q ss_pred HHHHHhhCC
Q psy93 243 QALRRCAEG 251 (503)
Q Consensus 243 kAl~~ln~g 251 (503)
+|++.||++
T Consensus 120 ~A~eAln~G 128 (377)
T KOG1308|consen 120 QASEALNDG 128 (377)
T ss_pred HHHHHhcCc
Confidence 455566655
No 250
>KOG4410|consensus
Probab=57.19 E-value=12 Score=37.22 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=37.9
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCCe-EEEEEecCCCceEEeeCCHH
Q psy93 114 CRLYLGNIGGDITENDIIELFKPYGET-QELFINKEKMFGFIRMDYKH 160 (503)
Q Consensus 114 ~~l~V~nLp~~~te~~L~~~F~~~G~V-~~v~i~~~kg~aFV~F~~~e 160 (503)
+.|||+|||.++...||+..+.+.+-+ .++...-+.+-||+.|.+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCcc
Confidence 459999999999999999999887743 55555556788999998754
No 251
>PLN03138 Protein TOC75; Provisional
Probab=54.63 E-value=45 Score=38.34 Aligned_cols=14 Identities=7% Similarity=-0.099 Sum_probs=10.2
Q ss_pred cccCHHHHHHHhcc
Q psy93 197 SCVTNELLELAFGV 210 (503)
Q Consensus 197 ~~~tee~L~~~Fs~ 210 (503)
+.+++.+|.++|..
T Consensus 250 ~~fs~~el~~~~~~ 263 (796)
T PLN03138 250 EDMTDKEKMEYYRS 263 (796)
T ss_pred cccCHHHHHHHhhc
Confidence 45778888888764
No 252
>KOG1596|consensus
Probab=53.65 E-value=24 Score=34.60 Aligned_cols=12 Identities=17% Similarity=0.066 Sum_probs=5.4
Q ss_pred EEEEEeCCHHHH
Q psy93 230 EGIVEFARKPAA 241 (503)
Q Consensus 230 ~gfV~F~s~e~A 241 (503)
.-|.....++.|
T Consensus 229 vIFaDvaqpdq~ 240 (317)
T KOG1596|consen 229 VIFADVAQPDQA 240 (317)
T ss_pred EEeccCCCchhh
Confidence 444444444444
No 253
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=52.73 E-value=1.5e+02 Score=33.75 Aligned_cols=19 Identities=11% Similarity=0.401 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHhhHHHHH
Q psy93 363 KKHAEEMQLRLAQQEEDLR 381 (503)
Q Consensus 363 r~rqee~~~~~~r~eEelr 381 (503)
+++.++++.++.+.+-||+
T Consensus 544 r~r~~~lE~E~~~lr~elk 562 (697)
T PF09726_consen 544 RQRRRQLESELKKLRRELK 562 (697)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444433
No 254
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=52.23 E-value=25 Score=33.03 Aligned_cols=62 Identities=16% Similarity=0.017 Sum_probs=40.6
Q ss_pred CHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhh-CCeeeecCCCCeEEeecCCc
Q psy93 200 TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCA-EGCFFLTQSLRPVIVEPLEL 269 (503)
Q Consensus 200 tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln-~g~~~~~~~~rpl~V~~~~~ 269 (503)
....|+++|..|+.+..+.+++. -+-.+|.|.+.+.|..|...|+ ++..+ .+..+.+.+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-----FrRi~v~f~~~~~A~~~r~~l~~~~~~~---~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-----FRRIRVVFESPESAQRARQLLHWDGTSF---NGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-----TTEEEEE-SSTTHHHHHHHTST--TSEE---TTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-----CCEEEEEeCCHHHHHHHHHHhccccccc---CCCceEEEEccc
Confidence 34779999999999988877765 3457999999999999999986 24444 355566666533
No 255
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=51.62 E-value=20 Score=30.80 Aligned_cols=103 Identities=17% Similarity=0.226 Sum_probs=63.2
Q ss_pred CCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCc--cccCceEEEEecccccceeccCc---
Q psy93 121 IGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGH--VLKGRSLKIRFAPINAAIKVKNL--- 195 (503)
Q Consensus 121 Lp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~--~l~g~~l~V~~a~~~~~L~V~nL--- 195 (503)
||+-++ .|-++|+.=|+|.+|..+. .|.+ .+ |+-.++|+ .++|. |+|--......+.|.+.
T Consensus 11 lPPYTn--KLSDYfeSPGKI~svItvt-------qypd-nd---al~~~~G~lE~vDg~-i~IGs~q~~~sV~i~gTPsg 76 (145)
T TIGR02542 11 LPPYTN--KLSDYFESPGKIQSVITVT-------QYPD-ND---ALLYVHGTLEQVDGN-IRIGSGQTPASVRIQGTPSG 76 (145)
T ss_pred cCCccc--hhhHHhcCCCceEEEEEEe-------ccCC-ch---hhheeeeehhhccCc-EEEccCCCcccEEEecCCCC
Confidence 787665 5789999999999886542 2222 12 33334555 33444 66655555555555543
Q ss_pred ------ccccCHHHHHHHhcc---CCCeeeeEEEeC--CCCCceeEEEEEeCCH
Q psy93 196 ------TSCVTNELLELAFGV---FGDIERAIVIVD--ERGNSKCEGIVEFARK 238 (503)
Q Consensus 196 ------p~~~tee~L~~~Fs~---~G~V~~~~v~~d--~~g~skg~gfV~F~s~ 238 (503)
|..+|-.+++++|+. |--|..-.|.+| +.|. -..||..|...
T Consensus 77 nnv~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~Gs-YRiCFrL~~~~ 129 (145)
T TIGR02542 77 NNVIFPPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGS-YRICFRLFNAT 129 (145)
T ss_pred CceecCceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCc-eEEEEEEeccc
Confidence 446888999999984 444555555555 3333 44788887654
No 256
>PF06102 DUF947: Domain of unknown function (DUF947); InterPro: IPR009292 This is a family of eukaryotic proteins with unknown function.
Probab=50.60 E-value=1.5e+02 Score=27.46 Aligned_cols=43 Identities=23% Similarity=0.467 Sum_probs=28.4
Q ss_pred hccCcccCCC-CCcc-hhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy93 292 RQVGPRFATV-NSFE-FEYGSRWKQLHELYEHETEMLRKELAQRE 334 (503)
Q Consensus 292 re~~~rf~~~-g~~e-~e~~~r~k~l~e~ee~e~e~~Ree~~~rE 334 (503)
....|||... |.+. ..+...+.-|+++...|...+++++....
T Consensus 32 ~~rDPRFd~~~G~~~~~~f~k~Y~FL~d~r~~E~~~Lk~~lk~~k 76 (168)
T PF06102_consen 32 KRRDPRFDSLSGEFNEDLFRKNYGFLDDYREKEIKELKKQLKKTK 76 (168)
T ss_pred CCCCCCcCccccccCHHHHHHhhhhHHHHHHHHHHHHHHHHHHcC
Confidence 3456788653 4543 33555677788888888888887776653
No 257
>KOG4571|consensus
Probab=50.53 E-value=1.4e+02 Score=29.98 Aligned_cols=46 Identities=28% Similarity=0.357 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHH
Q psy93 335 IDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLR 381 (503)
Q Consensus 335 ~~rEr~r~E~E~~eRq~ee~r~reeE~~r~rqee~~~~~~r~eEelr 381 (503)
++|+++|+|||.-+=+.+....+-++. +++-.++..+|++-+..++
T Consensus 241 RYRqKkRae~E~l~ge~~~Le~rN~~L-K~qa~~lerEI~ylKqli~ 286 (294)
T KOG4571|consen 241 RYRQKKRAEKEALLGELEGLEKRNEEL-KDQASELEREIRYLKQLIL 286 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 356666666666544444443333333 4444445555555444443
No 258
>KOG2295|consensus
Probab=49.43 E-value=4.3 Score=43.68 Aligned_cols=69 Identities=20% Similarity=0.209 Sum_probs=55.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec------CCCceEEeeCCHHHHHHHHHHhCCccccCceEE
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINK------EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLK 180 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~------~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~ 180 (503)
..|+|||.|++++++-++|..+++.+--+..+.+-. ...+..|+|.---...-|+..||+..+....+.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~s 304 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFLS 304 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccccc
Confidence 458899999999999999999999987776666532 245789999887777888888888877765553
No 259
>KOG1265|consensus
Probab=49.35 E-value=2e+02 Score=33.50 Aligned_cols=17 Identities=24% Similarity=0.202 Sum_probs=7.1
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy93 357 RDEELMKKHAEEMQLRL 373 (503)
Q Consensus 357 reeE~~r~rqee~~~~~ 373 (503)
|.++.+.++++++.+..
T Consensus 1139 rL~~~~~k~~e~L~k~~ 1155 (1189)
T KOG1265|consen 1139 RLAEKQSKRQEQLVKKH 1155 (1189)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444443
No 260
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=46.06 E-value=2.1e+02 Score=28.99 Aligned_cols=10 Identities=40% Similarity=0.624 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q psy93 320 EHETEMLRKE 329 (503)
Q Consensus 320 e~e~e~~Ree 329 (503)
+.|...++..
T Consensus 152 EeEL~~lr~~ 161 (291)
T PF06098_consen 152 EEELAALRRQ 161 (291)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 261
>KOG3915|consensus
Probab=44.92 E-value=1.4e+02 Score=31.96 Aligned_cols=9 Identities=33% Similarity=0.346 Sum_probs=4.2
Q ss_pred HHHHHHHHh
Q psy93 367 EEMQLRLAQ 375 (503)
Q Consensus 367 ee~~~~~~r 375 (503)
..++.++++
T Consensus 559 ~~~qkr~kk 567 (641)
T KOG3915|consen 559 AIVQKRLKK 567 (641)
T ss_pred HHHHHHHHH
Confidence 344444554
No 262
>KOG1295|consensus
Probab=43.00 E-value=33 Score=35.62 Aligned_cols=63 Identities=14% Similarity=0.371 Sum_probs=46.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCC-CeEEEEEecC--------CCceEEeeCCHHHHHHHHHHhCCccc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYG-ETQELFINKE--------KMFGFIRMDYKHNADKAKAKLDGHVL 174 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G-~V~~v~i~~~--------kg~aFV~F~~~e~A~~Ai~~l~g~~l 174 (503)
.-+.|.|.+||+..++.+|.+-...+- .|....+.+. -+.|||.|..+++.......++|..+
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 346799999999999999988777754 2333333211 35799999999998888777777743
No 263
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=40.96 E-value=1.1e+02 Score=23.74 Aligned_cols=48 Identities=17% Similarity=0.057 Sum_probs=36.2
Q ss_pred ccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCee
Q psy93 198 CVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCF 253 (503)
Q Consensus 198 ~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~ 253 (503)
.++-++++..+..|.-. .|..|.+ || ||.|.+..+|.+|....+...+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~t----Gf-YIvF~~~~Ea~rC~~~~~~~~~ 58 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDRT----GF-YIVFNDSKEAERCFRAEDGTLF 58 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecCC----EE-EEEECChHHHHHHHHhcCCCEE
Confidence 56778999999998643 4555543 33 8999999999999999874333
No 264
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=39.55 E-value=91 Score=24.34 Aligned_cols=59 Identities=20% Similarity=0.079 Sum_probs=31.5
Q ss_pred cccCHHHHHHHhccCCC-----eeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeecC
Q psy93 197 SCVTNELLELAFGVFGD-----IERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPL 267 (503)
Q Consensus 197 ~~~tee~L~~~Fs~~G~-----V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~~ 267 (503)
..++..+|..++...+. |-.+.|..+ |+||+... +.|..++..|+ +..+ .++.+.|+++
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-------~S~vev~~-~~a~~v~~~l~-~~~~---~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-------FSFVEVPE-EVAEKVLEALN-GKKI---KGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS--------EEEEE-T-T-HHHHHHHHT-T--S---SS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee-------EEEEEECH-HHHHHHHHHhc-CCCC---CCeeEEEEEC
Confidence 45677777777776654 445555544 88998764 47888888887 4433 5788887753
No 265
>KOG0579|consensus
Probab=38.02 E-value=5e+02 Score=29.55 Aligned_cols=31 Identities=35% Similarity=0.579 Sum_probs=19.3
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy93 326 LRKELAQR-EIDRERQKAEWEMKERQAEELKR 356 (503)
Q Consensus 326 ~Ree~~~r-E~~rEr~r~E~E~~eRq~ee~r~ 356 (503)
.|+-++++ ++-+.|+..=||+++++..|+..
T Consensus 955 ErecLm~Kq~LlRarEaaiWElEe~qlqEkhq 986 (1187)
T KOG0579|consen 955 ERECLMQKQNLLRAREAAIWELEEKQLQEKHQ 986 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 33444433 45667777778888887766543
No 266
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues. They contain a highly conserved DDRGK motif. The function is unknown. ; PDB: 1WI9_A.
Probab=37.98 E-value=11 Score=35.61 Aligned_cols=9 Identities=33% Similarity=0.708 Sum_probs=0.0
Q ss_pred HHHHHhHhh
Q psy93 378 EDLRRRQND 386 (503)
Q Consensus 378 EelrRrq~E 386 (503)
++..++.+|
T Consensus 65 eE~e~rE~e 73 (188)
T PF09756_consen 65 EEKERREQE 73 (188)
T ss_dssp ---------
T ss_pred hHHHHHHHH
Confidence 333333333
No 267
>PF02029 Caldesmon: Caldesmon; InterPro: IPR006018 This group of proteins includes two protein families: caldesmon and lymphocyte specific protein. Caldesmon (CDM) is an actin- and myosin-binding protein implicated in the regulation of actomyosin interactions in smooth muscle and non-muscle cells, possibly acting as a bridge between myosin and actin filaments []. CDM is believed to be an elongated molecule, with an N-terminal myosin/calmodulin- binding domain and a C-terminal tropomyosin/actin/calmodulin-binding domain, separated by a 40nm-long central helix []. A high-molecular-weight form of CDM is predominantly expressed in smooth muscles, while a low-molecular-weight form is widely distributed in non- muscle tissues and cells (the protein is not expressed in skeletal muscle or heart).
Probab=37.61 E-value=1.1e+02 Score=33.29 Aligned_cols=11 Identities=18% Similarity=0.238 Sum_probs=4.5
Q ss_pred HHHHHHhhccC
Q psy93 127 ENDIIELFKPY 137 (503)
Q Consensus 127 e~~L~~~F~~~ 137 (503)
.+|=..||...
T Consensus 60 ~dd~~allerl 70 (492)
T PF02029_consen 60 GDDDAALLERL 70 (492)
T ss_pred chhHHHHhhhh
Confidence 33334444443
No 268
>PF02029 Caldesmon: Caldesmon; InterPro: IPR006018 This group of proteins includes two protein families: caldesmon and lymphocyte specific protein. Caldesmon (CDM) is an actin- and myosin-binding protein implicated in the regulation of actomyosin interactions in smooth muscle and non-muscle cells, possibly acting as a bridge between myosin and actin filaments []. CDM is believed to be an elongated molecule, with an N-terminal myosin/calmodulin- binding domain and a C-terminal tropomyosin/actin/calmodulin-binding domain, separated by a 40nm-long central helix []. A high-molecular-weight form of CDM is predominantly expressed in smooth muscles, while a low-molecular-weight form is widely distributed in non- muscle tissues and cells (the protein is not expressed in skeletal muscle or heart).
Probab=36.95 E-value=97 Score=33.70 Aligned_cols=8 Identities=13% Similarity=0.165 Sum_probs=3.3
Q ss_pred CCCCCCCC
Q psy93 452 GGGGGRRN 459 (503)
Q Consensus 452 ~~~~~~~~ 459 (503)
.++.+.+|
T Consensus 436 ~~~~~~~~ 443 (492)
T PF02029_consen 436 SASKGTPC 443 (492)
T ss_pred CCCCCCCc
Confidence 33444444
No 269
>KOG4483|consensus
Probab=36.75 E-value=45 Score=34.78 Aligned_cols=56 Identities=21% Similarity=0.233 Sum_probs=43.2
Q ss_pred ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHH
Q psy93 187 NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRR 247 (503)
Q Consensus 187 ~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ 247 (503)
...|-|.++|.....++|..+|+.|+.--.-..+.| ...+|..|.+...|..||..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvD-----dthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVD-----DTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEee-----cceeEEeecchHHHHHHhhc
Confidence 457888999999989999999999986432222334 23789999999999999876
No 270
>KOG0742|consensus
Probab=36.73 E-value=4.3e+02 Score=28.39 Aligned_cols=11 Identities=45% Similarity=0.465 Sum_probs=6.4
Q ss_pred HHHHHHHHHhh
Q psy93 239 PAAAQALRRCA 249 (503)
Q Consensus 239 e~A~kAl~~ln 249 (503)
+-+.+|+..+|
T Consensus 79 ERaAKAlrein 89 (630)
T KOG0742|consen 79 ERAAKALREIN 89 (630)
T ss_pred HHHHHHHHhhc
Confidence 44556666665
No 271
>KOG4483|consensus
Probab=36.57 E-value=45 Score=34.78 Aligned_cols=54 Identities=11% Similarity=0.183 Sum_probs=42.9
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCCe-EEEEEecCCCceEEeeCCHHHHHHHHHH
Q psy93 114 CRLYLGNIGGDITENDIIELFKPYGET-QELFINKEKMFGFIRMDYKHNADKAKAK 168 (503)
Q Consensus 114 ~~l~V~nLp~~~te~~L~~~F~~~G~V-~~v~i~~~kg~aFV~F~~~e~A~~Ai~~ 168 (503)
..|-|.++|.....+||..+|+.|+.- ..|+.+ +...||-.|.+...|..|+..
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWv-DdthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWV-DDTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEe-ecceeEEeecchHHHHHHhhc
Confidence 468899999999999999999999742 334333 455899999999999999863
No 272
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=35.67 E-value=6.9e+02 Score=28.22 Aligned_cols=10 Identities=30% Similarity=0.348 Sum_probs=5.0
Q ss_pred CCHHHHHHhh
Q psy93 125 ITENDIIELF 134 (503)
Q Consensus 125 ~te~~L~~~F 134 (503)
+|.+++.++.
T Consensus 299 itR~~fe~l~ 308 (653)
T PTZ00009 299 ISRARFEELC 308 (653)
T ss_pred ECHHHHHHHH
Confidence 5555554443
No 273
>PF03879 Cgr1: Cgr1 family; InterPro: IPR005579 Cgr1 is involved in nucleolar integrity and is required for processing pre-rRNA for the 60S ribosome subunit. In Saccharomyces cerevisiae, this protein is conserved and contributes to compartmentalisation of nucleolar constituents []. Cgr1 is a small hydrophilic protein and members of this family are coiled-coil proteins []. Its primary role appears to be in ribosome biogenesis [, ]. Expression of CGR1 is also associated with a cessation of yeast cell growth, which is a prerequisite for germination in this organism [].
Probab=33.49 E-value=2.5e+02 Score=24.07 Aligned_cols=13 Identities=15% Similarity=0.342 Sum_probs=6.7
Q ss_pred HHHHHHHHHHhhH
Q psy93 365 HAEEMQLRLAQQE 377 (503)
Q Consensus 365 rqee~~~~~~r~e 377 (503)
+.+.+...|+...
T Consensus 80 R~E~~a~km~~kK 92 (108)
T PF03879_consen 80 RYEKMAAKMHAKK 92 (108)
T ss_pred HHHHHHHHHhHHH
Confidence 3455665555433
No 274
>KOG3756|consensus
Probab=33.12 E-value=3.8e+02 Score=27.31 Aligned_cols=11 Identities=36% Similarity=0.459 Sum_probs=4.9
Q ss_pred HHHHhccCCCe
Q psy93 204 LELAFGVFGDI 214 (503)
Q Consensus 204 L~~~Fs~~G~V 214 (503)
|...|+..|.|
T Consensus 61 lr~~~~~~~G~ 71 (340)
T KOG3756|consen 61 LRRGFSDSGGI 71 (340)
T ss_pred hhhhhhccCCC
Confidence 44445444443
No 275
>KOG3878|consensus
Probab=31.34 E-value=6e+02 Score=26.16 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=9.6
Q ss_pred HHhhHHHHHHhHhhhhHHH
Q psy93 373 LAQQEEDLRRRQNDNSMFL 391 (503)
Q Consensus 373 ~~r~eEelrRrq~E~~~~~ 391 (503)
+-|+-.+...+|--.++|.
T Consensus 205 LIrQLQeqHYqQYMqQly~ 223 (469)
T KOG3878|consen 205 LIRQLQEQHYQQYMQQLYL 223 (469)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344455555664445554
No 276
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=31.26 E-value=41 Score=29.12 Aligned_cols=46 Identities=22% Similarity=0.265 Sum_probs=26.6
Q ss_pred cCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHH-HHHHHH
Q psy93 199 VTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPA-AAQALR 246 (503)
Q Consensus 199 ~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~-A~kAl~ 246 (503)
++.+.|.+.|+.|..+. ++.+.+.. .+.++++|.|.+.-+ -..|+.
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~~-gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGKQ-GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEETT-EEEEEEEEE--SSHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCCC-CCcEEEEEEECCChHHHHHHHH
Confidence 46688999999998875 55555544 457899999976543 344444
No 277
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=31.18 E-value=16 Score=39.57 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHhHhhhhHH
Q psy93 371 LRLAQQEEDLRRRQNDNSMF 390 (503)
Q Consensus 371 ~~~~r~eEelrRrq~E~~~~ 390 (503)
.++...||||||.+.|....
T Consensus 440 ~RL~~vEeELrre~~~m~~~ 459 (495)
T PF12004_consen 440 SRLMAVEEELRREHAEMQAV 459 (495)
T ss_dssp --------------------
T ss_pred hhhhhhhhhhhhhHHHHhcc
Confidence 34667788888887764443
No 278
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=31.15 E-value=32 Score=29.78 Aligned_cols=47 Identities=6% Similarity=0.181 Sum_probs=25.1
Q ss_pred EEEEcCCCCC---------CCHHHHHHhhccCCCeEEEEEec---CCCceEEeeCCHHH
Q psy93 115 RLYLGNIGGD---------ITENDIIELFKPYGETQELFINK---EKMFGFIRMDYKHN 161 (503)
Q Consensus 115 ~l~V~nLp~~---------~te~~L~~~F~~~G~V~~v~i~~---~kg~aFV~F~~~e~ 161 (503)
+++|-|+|.. ++.+.|.+.|+.|.++.-..+.. +.++++|.|.+.-.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWS 68 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChH
Confidence 4677788643 46788999999999876444432 25799999986544
No 279
>COG1422 Predicted membrane protein [Function unknown]
Probab=30.10 E-value=1.6e+02 Score=28.04 Aligned_cols=13 Identities=8% Similarity=0.299 Sum_probs=5.6
Q ss_pred HhhHHHHHHhHhh
Q psy93 374 AQQEEDLRRRQND 386 (503)
Q Consensus 374 ~r~eEelrRrq~E 386 (503)
+.++.|+...|.|
T Consensus 104 q~~qmem~~~Q~e 116 (201)
T COG1422 104 QEKQMEMMDDQRE 116 (201)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444444
No 280
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=29.99 E-value=4.6e+02 Score=24.38 Aligned_cols=8 Identities=0% Similarity=0.318 Sum_probs=3.2
Q ss_pred HhhhhHHH
Q psy93 384 QNDNSMFL 391 (503)
Q Consensus 384 q~E~~~~~ 391 (503)
.+|+...|
T Consensus 127 r~ErE~~~ 134 (171)
T PF05672_consen 127 RKERERIM 134 (171)
T ss_pred HHHHHHHH
Confidence 33334444
No 281
>PTZ00436 60S ribosomal protein L19-like protein; Provisional
Probab=29.60 E-value=3.1e+02 Score=27.79 Aligned_cols=18 Identities=0% Similarity=0.027 Sum_probs=12.8
Q ss_pred cCcccccCHHHHHHHhcc
Q psy93 193 KNLTSCVTNELLELAFGV 210 (503)
Q Consensus 193 ~nLp~~~tee~L~~~Fs~ 210 (503)
..|..-+|-++|+.++..
T Consensus 30 ~eIa~AiTReDIRkLIkd 47 (357)
T PTZ00436 30 SEISNANSRKSVRKLIKD 47 (357)
T ss_pred HHHHHhhhHHHHHHHHHC
Confidence 345566788888888865
No 282
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=28.97 E-value=1.7e+02 Score=30.79 Aligned_cols=80 Identities=18% Similarity=0.345 Sum_probs=0.0
Q ss_pred CCCcEEEEcCCCCC-CCHHHHHHhhccC----CCeEEEEEecC------------CC-----------------------
Q psy93 111 ANNCRLYLGNIGGD-ITENDIIELFKPY----GETQELFINKE------------KM----------------------- 150 (503)
Q Consensus 111 ~~~~~l~V~nLp~~-~te~~L~~~F~~~----G~V~~v~i~~~------------kg----------------------- 150 (503)
..+.+|-|=||.++ +...+|..+|+.| |+|..|.|.++ .|
T Consensus 144 ~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn~ 223 (622)
T COG5638 144 NPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDNV 223 (622)
T ss_pred CcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCccc
Q ss_pred ------------------------------------ceEEeeCCHHHHHHHHHHhCCcccc--CceEEEEecccccce
Q psy93 151 ------------------------------------FGFIRMDYKHNADKAKAKLDGHVLK--GRSLKIRFAPINAAI 190 (503)
Q Consensus 151 ------------------------------------~aFV~F~~~e~A~~Ai~~l~g~~l~--g~~l~V~~a~~~~~L 190 (503)
||.|++.+...+......|+|+.+. ...+-+.|.+..-++
T Consensus 224 ~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvPD~~tf 301 (622)
T COG5638 224 FSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVPDSLTF 301 (622)
T ss_pred hhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeecCCCccc
No 283
>KOG4365|consensus
Probab=28.53 E-value=9.1 Score=40.17 Aligned_cols=72 Identities=6% Similarity=-0.132 Sum_probs=57.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
+++.|+..||..++++++.-+|..||.|..+.+.+. +-.+||+..+ .+|..||..+.-..+++..++|.+++
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 355788899999999999999999999987776321 3467887766 57788888888788888888887775
No 284
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=28.45 E-value=87 Score=25.23 Aligned_cols=34 Identities=9% Similarity=0.190 Sum_probs=24.4
Q ss_pred CeEEEEEecC-CCceEEeeCCHHHHHHHHHHhCCc
Q psy93 139 ETQELFINKE-KMFGFIRMDYKHNADKAKAKLDGH 172 (503)
Q Consensus 139 ~V~~v~i~~~-kg~aFV~F~~~e~A~~Ai~~l~g~ 172 (503)
.|.++....+ +||-||+=.+..++..|++.+.+.
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhcccce
Confidence 6777777654 999999999999999998866554
No 285
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=28.05 E-value=76 Score=35.74 Aligned_cols=7 Identities=43% Similarity=0.425 Sum_probs=3.1
Q ss_pred HHHHHHH
Q psy93 10 QEVNQLY 16 (503)
Q Consensus 10 ~~~~~~~ 16 (503)
.+|-+++
T Consensus 539 ~~~~~~~ 545 (629)
T PRK11634 539 GEVLQHF 545 (629)
T ss_pred HHHHHHh
Confidence 3444444
No 286
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=28.01 E-value=5.9e+02 Score=25.25 Aligned_cols=13 Identities=23% Similarity=0.616 Sum_probs=5.4
Q ss_pred hhHHHHHHhHhhh
Q psy93 375 QQEEDLRRRQNDN 387 (503)
Q Consensus 375 r~eEelrRrq~E~ 387 (503)
..+++.+++++++
T Consensus 193 K~~e~~~~r~~~~ 205 (264)
T PF13904_consen 193 KKEEQQQKREEER 205 (264)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 287
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=27.18 E-value=1.9e+02 Score=21.10 Aligned_cols=54 Identities=7% Similarity=0.017 Sum_probs=40.7
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCH----HHHHHHHHH
Q psy93 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYK----HNADKAKAK 168 (503)
Q Consensus 115 ~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~----e~A~~Ai~~ 168 (503)
+|.|.||.-.--...|.+.+...-.|.++.+....+.+-|.|... ++..++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHH
Confidence 467777765566778888898888899999988888899998754 455555554
No 288
>KOG4213|consensus
Probab=26.90 E-value=30 Score=32.18 Aligned_cols=50 Identities=16% Similarity=-0.016 Sum_probs=31.5
Q ss_pred cCHHHHHHHhccC-CCeeeeEEEeCCCC--CceeEEEEEeCCHHHHHHHHHHh
Q psy93 199 VTNELLELAFGVF-GDIERAIVIVDERG--NSKCEGIVEFARKPAAAQALRRC 248 (503)
Q Consensus 199 ~tee~L~~~Fs~~-G~V~~~~v~~d~~g--~skg~gfV~F~s~e~A~kAl~~l 248 (503)
.|++.|.++..-. |++..+..-....+ .-+|..||+|.+.+.|.+++..-
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~ 170 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTH 170 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhh
Confidence 4444444433222 67776655443222 45788999999999999877653
No 289
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=26.56 E-value=3.6e+02 Score=23.66 Aligned_cols=70 Identities=16% Similarity=0.123 Sum_probs=50.8
Q ss_pred cEEEEcCCCCC---CCHHHHHHhhccCC-CeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 114 CRLYLGNIGGD---ITENDIIELFKPYG-ETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 114 ~~l~V~nLp~~---~te~~L~~~F~~~G-~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
..|-|+..... .+-..|.+++..-| .++++.. ......|.|.+.++-.+|.+.|....-++..|.+..++
T Consensus 36 pavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~--~~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~p 109 (127)
T PRK10629 36 STLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITP--ENDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDDN 109 (127)
T ss_pred ceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEe--eCCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 35777766434 56678888888887 5666665 34579999999999999988887766556666666554
No 290
>PHA00370 III attachment protein
Probab=25.67 E-value=1.1e+02 Score=30.06 Aligned_cols=6 Identities=17% Similarity=-0.197 Sum_probs=2.5
Q ss_pred EEEEeC
Q psy93 231 GIVEFA 236 (503)
Q Consensus 231 gfV~F~ 236 (503)
.||.|.
T Consensus 247 ~FV~~~ 252 (297)
T PHA00370 247 PFVFAQ 252 (297)
T ss_pred cceeec
Confidence 344443
No 291
>KOG3262|consensus
Probab=25.55 E-value=1.3e+02 Score=28.13 Aligned_cols=8 Identities=63% Similarity=1.115 Sum_probs=3.1
Q ss_pred CCCCCCCC
Q psy93 38 MSLGGRGG 45 (503)
Q Consensus 38 ~~rGgggG 45 (503)
...+++++
T Consensus 156 ~~~gg~gg 163 (215)
T KOG3262|consen 156 PGPGGRGG 163 (215)
T ss_pred CCCCCCCc
Confidence 33344333
No 292
>KOG3859|consensus
Probab=24.87 E-value=7.4e+02 Score=25.15 Aligned_cols=10 Identities=20% Similarity=0.288 Sum_probs=4.3
Q ss_pred EEEEEeCCHH
Q psy93 230 EGIVEFARKP 239 (503)
Q Consensus 230 ~gfV~F~s~e 239 (503)
.-+-.|.+-+
T Consensus 210 v~IYqfPtDd 219 (406)
T KOG3859|consen 210 VQIYQFPTDD 219 (406)
T ss_pred ceeeeccchH
Confidence 3344454443
No 293
>KOG0579|consensus
Probab=24.75 E-value=8.8e+02 Score=27.74 Aligned_cols=14 Identities=14% Similarity=0.245 Sum_probs=5.5
Q ss_pred HHHHHhHhhhhHHH
Q psy93 378 EDLRRRQNDNSMFL 391 (503)
Q Consensus 378 EelrRrq~E~~~~~ 391 (503)
+.+..+|++-..++
T Consensus 927 dFv~kqqq~le~~l 940 (1187)
T KOG0579|consen 927 DFVMKQQQNLEAML 940 (1187)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444433333
No 294
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=24.25 E-value=66 Score=37.44 Aligned_cols=6 Identities=33% Similarity=0.302 Sum_probs=2.3
Q ss_pred HHHHHH
Q psy93 341 KAEWEM 346 (503)
Q Consensus 341 r~E~E~ 346 (503)
++|+|+
T Consensus 723 lrERE~ 728 (982)
T PF03154_consen 723 LREREI 728 (982)
T ss_pred hhhhhh
Confidence 333333
No 295
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=24.16 E-value=42 Score=27.58 Aligned_cols=23 Identities=9% Similarity=0.238 Sum_probs=19.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhh
Q psy93 112 NNCRLYLGNIGGDITENDIIELF 134 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F 134 (503)
...+|.|.|||..+++++|++.+
T Consensus 51 s~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 51 SKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred cCCEEEEeCCCCCCChhhheeeE
Confidence 45689999999999999998765
No 296
>KOG0971|consensus
Probab=24.06 E-value=7.5e+02 Score=29.15 Aligned_cols=31 Identities=13% Similarity=0.271 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHhHhhhhHHHHH
Q psy93 363 KKHAEEMQLRLAQQEEDLRRRQNDNSMFLVE 393 (503)
Q Consensus 363 r~rqee~~~~~~r~eEelrRrq~E~~~~~q~ 393 (503)
..+|.+++.++.|.+.|.+.-|.-+..|+++
T Consensus 275 m~qqa~Lqrel~raR~e~keaqe~ke~~k~e 305 (1243)
T KOG0971|consen 275 MEQQADLQRELKRARKEAKEAQEAKERYKEE 305 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555554444444444443
No 297
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=23.94 E-value=7.4e+02 Score=24.81 Aligned_cols=10 Identities=40% Similarity=0.574 Sum_probs=3.9
Q ss_pred HHHHHhhccC
Q psy93 128 NDIIELFKPY 137 (503)
Q Consensus 128 ~~L~~~F~~~ 137 (503)
..|..|+..|
T Consensus 8 ~~L~~L~~~Y 17 (297)
T PF02841_consen 8 PMLAELVKSY 17 (297)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444333
No 298
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=23.71 E-value=2e+02 Score=22.27 Aligned_cols=42 Identities=12% Similarity=0.115 Sum_probs=32.1
Q ss_pred HHHHHhhccCCCeEEEEEecC--CCceEEeeCCHHHHHHHHHHhC
Q psy93 128 NDIIELFKPYGETQELFINKE--KMFGFIRMDYKHNADKAKAKLD 170 (503)
Q Consensus 128 ~~L~~~F~~~G~V~~v~i~~~--kg~aFV~F~~~e~A~~Ai~~l~ 170 (503)
.+|.+++..+| +..+.|.-+ -++.|+-+.+.+.+.++++.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 46677788888 666677666 6788888889999888887653
No 299
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=23.33 E-value=1.5e+02 Score=22.77 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=15.9
Q ss_pred HHHHHHhccCCCeeeeEEEe
Q psy93 202 ELLELAFGVFGDIERAIVIV 221 (503)
Q Consensus 202 e~L~~~Fs~~G~V~~~~v~~ 221 (503)
.+|+++|+..|+|.-+.|..
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 57899999999998665543
No 300
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=22.62 E-value=6.4e+02 Score=29.29 Aligned_cols=6 Identities=33% Similarity=0.783 Sum_probs=2.9
Q ss_pred cEEEEc
Q psy93 114 CRLYLG 119 (503)
Q Consensus 114 ~~l~V~ 119 (503)
+++||.
T Consensus 220 ~t~y~e 225 (782)
T PRK00409 220 ATLYIE 225 (782)
T ss_pred CEEEEE
Confidence 345554
No 301
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.07 E-value=8.6e+02 Score=24.86 Aligned_cols=10 Identities=20% Similarity=0.507 Sum_probs=4.4
Q ss_pred cCHHHHHHHh
Q psy93 199 VTNELLELAF 208 (503)
Q Consensus 199 ~tee~L~~~F 208 (503)
+-..-|..+|
T Consensus 30 ~C~sCv~~l~ 39 (309)
T TIGR00570 30 LCESCVDLLF 39 (309)
T ss_pred ccHHHHHHHh
Confidence 3344444444
No 302
>KOG4410|consensus
Probab=21.92 E-value=1.5e+02 Score=29.62 Aligned_cols=48 Identities=15% Similarity=0.095 Sum_probs=34.5
Q ss_pred cceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHH
Q psy93 188 AAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKP 239 (503)
Q Consensus 188 ~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e 239 (503)
+-|+++||+.++.-.+|+..+.+.+-+.-..... .+.+-||+.|.+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk----g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK----GHFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeee----cCCcceeEecCCcc
Confidence 5699999999999999999988776443221222 23567999997653
No 303
>PHA00370 III attachment protein
Probab=21.71 E-value=2e+02 Score=28.36 Aligned_cols=13 Identities=54% Similarity=0.654 Sum_probs=5.9
Q ss_pred CCCCCcCCCCCCC
Q psy93 477 GPSVDHGSRRGGS 489 (503)
Q Consensus 477 ~~~~~~~~~~~~~ 489 (503)
|-+.+.|+-+|++
T Consensus 115 GGs~GgGs~GGGS 127 (297)
T PHA00370 115 GGSGGGGSDGGGS 127 (297)
T ss_pred CCCCCCCCCCCCC
Confidence 3344444444444
No 304
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=21.59 E-value=1.8e+02 Score=23.18 Aligned_cols=53 Identities=8% Similarity=0.100 Sum_probs=37.8
Q ss_pred EEEEcCCCCCCCHHHHHHhhcc-CC-CeEEEEEec---CCCceEEeeCCHHHHHHHHH
Q psy93 115 RLYLGNIGGDITENDIIELFKP-YG-ETQELFINK---EKMFGFIRMDYKHNADKAKA 167 (503)
Q Consensus 115 ~l~V~nLp~~~te~~L~~~F~~-~G-~V~~v~i~~---~kg~aFV~F~~~e~A~~Ai~ 167 (503)
+-|+-..+.+.+..+|+..++. |+ .|.+|.... +---|||++.....|...-.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 3567778899999999988876 44 566665432 22359999988877776543
No 305
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=21.06 E-value=2.5e+02 Score=26.51 Aligned_cols=7 Identities=43% Similarity=1.161 Sum_probs=3.2
Q ss_pred HHHHHHH
Q psy93 341 KAEWEMK 347 (503)
Q Consensus 341 r~E~E~~ 347 (503)
++||+++
T Consensus 141 ~~~~~~~ 147 (197)
T PRK12585 141 RMEWERR 147 (197)
T ss_pred HHHHHHH
Confidence 4445543
No 306
>KOG4213|consensus
Probab=20.28 E-value=1e+02 Score=28.87 Aligned_cols=51 Identities=14% Similarity=0.046 Sum_probs=36.3
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec-------CCCceEEeeCCHHHHHHHHHH
Q psy93 114 CRLYLGNIGGDITENDIIELFKPYGETQELFINK-------EKMFGFIRMDYKHNADKAKAK 168 (503)
Q Consensus 114 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~-------~kg~aFV~F~~~e~A~~Ai~~ 168 (503)
.++|.. |.+...++|..+-+ |.+..|.+.+ -+|-.||+|.+.+.|..+++.
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 456665 44455556665555 7888888743 267899999999999987764
No 307
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=20.09 E-value=1.2e+02 Score=30.20 Aligned_cols=44 Identities=20% Similarity=0.169 Sum_probs=31.4
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHH
Q psy93 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168 (503)
Q Consensus 115 ~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~ 168 (503)
...|+|||+++|..-|..++...-.+.. +|.+-..|-|++-+..
T Consensus 97 ~~vVaNlPY~Isspii~kll~~~~~~~~----------~v~M~QkEva~Rl~A~ 140 (259)
T COG0030 97 YKVVANLPYNISSPILFKLLEEKFIIQD----------MVLMVQKEVAERLVAK 140 (259)
T ss_pred CEEEEcCCCcccHHHHHHHHhccCccce----------EEEEeHHHHHHHHhCC
Confidence 4679999999999999999877644433 3344555677766543
Done!