Query psy93
Match_columns 503
No_of_seqs 533 out of 3096
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 23:53:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy93.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/93hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sde_A Paraspeckle component 1 100.0 4.4E-39 1.5E-43 317.6 28.5 230 94-325 4-233 (261)
2 4f02_A Polyadenylate-binding p 100.0 1.7E-29 5.9E-34 241.3 17.5 156 112-272 14-183 (213)
3 3nmr_A Cugbp ELAV-like family 100.0 3.1E-29 1.1E-33 230.0 18.4 156 112-268 2-175 (175)
4 3smz_A Protein raver-1, ribonu 100.0 2.5E-28 8.7E-33 242.7 20.1 192 109-305 18-213 (284)
5 1b7f_A Protein (SXL-lethal pro 100.0 2.8E-28 9.6E-33 222.4 18.6 154 112-267 2-168 (168)
6 3tyt_A Heterogeneous nuclear r 100.0 2E-28 6.8E-33 233.0 17.4 154 112-266 3-203 (205)
7 2g4b_A Splicing factor U2AF 65 100.0 2.1E-28 7.3E-33 224.3 16.9 151 112-267 3-171 (172)
8 3md3_A Nuclear and cytoplasmic 100.0 3.6E-28 1.2E-32 220.8 18.2 151 114-268 1-165 (166)
9 1fxl_A Paraneoplastic encephal 100.0 4.8E-28 1.6E-32 220.1 19.0 153 113-267 2-167 (167)
10 2qfj_A FBP-interacting repress 100.0 1.3E-27 4.5E-32 227.1 20.5 154 113-270 28-205 (216)
11 1l3k_A Heterogeneous nuclear r 100.0 1E-27 3.6E-32 224.3 17.4 156 111-272 11-185 (196)
12 2yh0_A Splicing factor U2AF 65 100.0 1.5E-27 5E-32 223.7 16.4 154 112-270 3-194 (198)
13 2cjk_A Nuclear polyadenylated 99.9 2.2E-27 7.5E-32 216.4 14.6 152 112-270 2-166 (167)
14 2ghp_A U4/U6 snRNA-associated 99.9 1.6E-27 5.5E-32 237.8 11.9 192 109-306 37-240 (292)
15 1fje_B Nucleolin RBD12, protei 99.9 2.2E-26 7.7E-31 211.7 15.9 151 111-270 11-174 (175)
16 2adc_A Polypyrimidine tract-bi 99.9 4.5E-26 1.5E-30 220.0 17.5 152 111-269 32-227 (229)
17 3pgw_A U1-A; protein-RNA compl 99.9 1.1E-25 3.8E-30 223.4 19.4 151 111-268 7-281 (282)
18 3smz_A Protein raver-1, ribonu 99.9 1.2E-25 4.3E-30 223.2 19.1 156 112-271 94-265 (284)
19 1qm9_A Polypyrimidine tract-bi 99.9 4.1E-26 1.4E-30 214.5 14.0 150 113-269 3-196 (198)
20 2ghp_A U4/U6 snRNA-associated 99.9 1.8E-25 6.2E-30 222.9 16.5 156 110-270 114-291 (292)
21 4f25_A Polyadenylate-binding p 99.8 6.5E-20 2.2E-24 157.9 8.6 92 112-203 4-113 (115)
22 4fxv_A ELAV-like protein 1; RN 99.7 4.6E-18 1.6E-22 142.4 9.3 82 106-187 12-99 (99)
23 2wbr_A GW182, gawky, LD47780P; 99.7 7.6E-18 2.6E-22 136.5 9.6 72 113-184 7-78 (89)
24 3lqv_A PRE-mRNA branch site pr 99.7 7.5E-18 2.6E-22 144.5 9.8 100 112-213 7-109 (115)
25 2cpj_A Non-POU domain-containi 99.7 1.6E-17 5.6E-22 138.6 10.5 87 108-194 10-96 (99)
26 2kn4_A Immunoglobulin G-bindin 99.7 1.8E-17 6.1E-22 150.2 10.5 121 147-271 11-151 (158)
27 1x4d_A Matrin 3; structural ge 99.7 2E-17 6.9E-22 139.2 8.3 79 112-190 14-95 (102)
28 1sjq_A Polypyrimidine tract-bi 99.7 2.2E-17 7.6E-22 139.4 8.0 76 112-187 15-92 (105)
29 3r27_A HnRNP L, heterogeneous 99.7 4.7E-17 1.6E-21 136.1 9.7 77 111-187 19-97 (100)
30 2hvz_A Splicing factor, argini 99.7 2.3E-17 7.8E-22 138.2 7.9 83 114-196 1-100 (101)
31 2i2y_A Fusion protein consists 99.7 3.4E-17 1.2E-21 147.3 8.1 114 148-270 12-148 (150)
32 1x4f_A Matrin 3; structural ge 99.7 7.5E-17 2.6E-21 137.9 9.5 83 110-192 22-107 (112)
33 1wg1_A KIAA1579 protein, homol 99.7 1E-16 3.4E-21 131.0 8.8 83 112-195 4-86 (88)
34 2cq1_A PTB-like protein L; RRM 99.7 2.3E-16 7.7E-21 132.7 11.0 76 112-187 14-91 (101)
35 1whx_A Hypothetical protein ri 99.7 4.5E-17 1.5E-21 139.3 6.6 75 112-186 9-83 (111)
36 1why_A Hypothetical protein ri 99.7 2.2E-16 7.5E-21 131.2 10.4 76 112-187 16-93 (97)
37 2ad9_A Polypyrimidine tract-bi 99.7 1.5E-16 5.2E-21 137.4 9.7 77 111-187 29-107 (119)
38 1wex_A Hypothetical protein (r 99.7 2.2E-16 7.4E-21 133.5 10.1 76 112-187 14-91 (104)
39 2dgx_A KIAA0430 protein; RRM d 99.7 2.3E-16 7.9E-21 131.0 9.6 78 110-187 6-90 (96)
40 2ytc_A PRE-mRNA-splicing facto 99.7 2.1E-16 7E-21 127.8 8.9 74 112-185 11-85 (85)
41 1x4c_A Splicing factor, argini 99.7 5E-16 1.7E-20 131.8 11.7 74 113-187 15-93 (108)
42 3md1_A Nuclear and cytoplasmic 99.6 3.5E-16 1.2E-20 125.8 9.2 75 113-187 1-81 (83)
43 2la4_A Nuclear and cytoplasmic 99.6 1.9E-16 6.5E-21 132.5 7.9 75 112-186 26-100 (101)
44 2x1f_A MRNA 3'-END-processing 99.6 2.9E-16 1E-20 130.2 8.8 80 113-192 2-87 (96)
45 2cq3_A RNA-binding protein 9; 99.6 7.8E-16 2.7E-20 129.2 11.4 76 112-187 14-93 (103)
46 2f3j_A RNA and export factor b 99.6 5E-16 1.7E-20 143.9 11.0 80 110-189 85-169 (177)
47 3s8s_A Histone-lysine N-methyl 99.6 3.9E-16 1.3E-20 133.3 9.4 76 112-187 5-86 (110)
48 2dnq_A RNA-binding protein 4B; 99.6 6.8E-16 2.3E-20 126.4 10.4 74 112-187 7-80 (90)
49 2dnh_A Bruno-like 5, RNA bindi 99.6 7.2E-16 2.5E-20 129.8 10.7 77 111-187 13-97 (105)
50 1x4g_A Nucleolysin TIAR; struc 99.6 4.3E-16 1.5E-20 132.3 9.4 77 112-188 24-100 (109)
51 2err_A Ataxin-2-binding protei 99.6 3.7E-16 1.3E-20 133.0 8.9 81 107-187 23-107 (109)
52 2dnz_A Probable RNA-binding pr 99.6 8.5E-16 2.9E-20 126.9 10.8 76 112-187 4-85 (95)
53 3mdf_A Peptidyl-prolyl CIS-tra 99.6 5E-16 1.7E-20 125.4 9.2 74 112-185 6-85 (85)
54 1wf1_A RNA-binding protein RAL 99.6 7.2E-16 2.5E-20 131.2 10.4 76 109-186 23-99 (110)
55 2cqi_A Nucleolysin TIAR; RNA r 99.6 9E-16 3.1E-20 128.9 10.8 76 112-187 14-93 (103)
56 3bs9_A Nucleolysin TIA-1 isofo 99.6 4.5E-16 1.6E-20 126.3 8.5 75 112-186 5-85 (87)
57 2d9p_A Polyadenylate-binding p 99.6 6.6E-16 2.3E-20 129.7 9.6 76 112-187 14-93 (103)
58 2cpz_A CUG triplet repeat RNA- 99.6 1.1E-15 3.8E-20 131.0 11.1 76 112-187 24-105 (115)
59 2cph_A RNA binding motif prote 99.6 1.1E-15 3.6E-20 129.2 10.8 77 112-188 14-98 (107)
60 1whw_A Hypothetical protein ri 99.6 9.8E-16 3.4E-20 127.6 10.3 77 112-188 7-89 (99)
61 2e5h_A Zinc finger CCHC-type a 99.6 1.2E-15 4.1E-20 125.7 10.4 74 112-185 15-94 (94)
62 2cpf_A RNA binding motif prote 99.6 5.6E-16 1.9E-20 128.8 8.3 76 112-187 4-88 (98)
63 2lxi_A RNA-binding protein 10; 99.6 1.6E-16 5.5E-21 130.8 4.9 76 113-188 1-84 (91)
64 1x5t_A Splicing factor 3B subu 99.6 5.3E-16 1.8E-20 128.4 8.1 76 112-187 4-86 (96)
65 2jrs_A RNA-binding protein 39; 99.6 1.3E-15 4.3E-20 129.5 10.6 80 108-187 21-106 (108)
66 2xnq_A Nuclear polyadenylated 99.6 1.2E-15 4E-20 127.2 10.1 78 108-187 17-95 (97)
67 2do4_A Squamous cell carcinoma 99.6 1.5E-15 5E-20 126.8 10.8 76 112-187 16-96 (100)
68 4a8x_A RNA-binding protein wit 99.6 8.7E-16 3E-20 124.8 9.1 76 112-187 3-85 (88)
69 2dnm_A SRP46 splicing factor; 99.6 8.9E-16 3E-20 128.9 9.3 76 112-187 12-93 (103)
70 2cqb_A Peptidyl-prolyl CIS-tra 99.6 7.7E-16 2.6E-20 129.0 8.9 76 112-187 11-92 (102)
71 2cq0_A Eukaryotic translation 99.6 8.6E-16 2.9E-20 129.0 9.2 77 111-187 13-95 (103)
72 1x5s_A Cold-inducible RNA-bind 99.6 1E-15 3.5E-20 128.2 9.4 76 112-187 11-92 (102)
73 1p27_B RNA-binding protein 8A; 99.6 1E-15 3.5E-20 129.1 9.5 78 110-187 20-103 (106)
74 1x5u_A Splicing factor 3B subu 99.6 1.7E-15 5.7E-20 127.6 10.7 77 112-188 14-96 (105)
75 2dgv_A HnRNP M, heterogeneous 99.6 8.1E-16 2.8E-20 126.2 8.4 76 112-187 7-86 (92)
76 2jvr_A Nucleolar protein 3; RN 99.6 6.2E-16 2.1E-20 132.2 8.0 75 112-186 27-104 (111)
77 2dgo_A Cytotoxic granule-assoc 99.6 1.2E-15 4.1E-20 130.7 9.7 78 110-187 12-95 (115)
78 2dgs_A DAZ-associated protein 99.6 2.2E-15 7.4E-20 125.6 11.0 75 112-187 9-89 (99)
79 2dgt_A RNA-binding protein 30; 99.6 1.7E-15 5.7E-20 124.6 10.0 75 111-187 8-82 (92)
80 3ex7_B RNA-binding protein 8A; 99.6 1.3E-15 4.4E-20 132.7 9.8 76 111-186 20-101 (126)
81 2khc_A Testis-specific RNP-typ 99.6 1.7E-15 5.7E-20 130.4 10.3 76 110-185 37-118 (118)
82 2jvo_A Nucleolar protein 3; nu 99.6 1.4E-15 4.7E-20 129.3 9.6 78 108-187 26-103 (108)
83 1x4a_A Splicing factor, argini 99.6 3E-15 1E-19 127.0 11.6 76 112-187 21-99 (109)
84 2dgu_A Heterogeneous nuclear r 99.6 1.4E-15 4.8E-20 127.8 9.4 74 112-187 10-83 (103)
85 1x5p_A Negative elongation fac 99.6 3E-15 1E-19 124.4 11.4 75 111-187 13-87 (97)
86 2lkz_A RNA-binding protein 5; 99.6 6.9E-16 2.4E-20 128.2 7.4 75 112-186 8-94 (95)
87 2cqc_A Arginine/serine-rich sp 99.6 1.1E-15 3.7E-20 126.1 8.5 75 112-186 14-94 (95)
88 2ywk_A Putative RNA-binding pr 99.6 9.7E-16 3.3E-20 126.5 8.0 75 112-186 15-94 (95)
89 2cpd_A Apobec-1 stimulating pr 99.6 3.3E-15 1.1E-19 124.5 11.2 78 109-188 11-90 (99)
90 1s79_A Lupus LA protein; RRM, 99.6 1.4E-15 5E-20 128.2 9.0 74 112-186 10-88 (103)
91 2dnp_A RNA-binding protein 14; 99.6 1.7E-15 5.8E-20 124.0 9.2 75 111-187 7-81 (90)
92 2a3j_A U1 small nuclear ribonu 99.6 1.9E-15 6.5E-20 132.3 10.0 78 111-188 27-111 (127)
93 2kvi_A Nuclear polyadenylated 99.6 1.5E-15 5.1E-20 126.0 8.9 75 111-187 8-83 (96)
94 2la6_A RNA-binding protein FUS 99.6 2.2E-15 7.4E-20 125.6 9.9 74 112-185 12-99 (99)
95 2fy1_A RNA-binding motif prote 99.6 2.1E-15 7E-20 129.9 10.0 75 112-186 6-85 (116)
96 2div_A TRNA selenocysteine ass 99.6 1.4E-15 4.9E-20 126.6 8.7 76 112-187 8-94 (99)
97 1x4h_A RNA-binding protein 28; 99.6 2.1E-15 7.3E-20 128.1 9.9 76 112-187 14-101 (111)
98 2e5j_A Methenyltetrahydrofolat 99.6 3.2E-15 1.1E-19 124.2 10.5 75 112-187 18-94 (97)
99 3ulh_A THO complex subunit 4; 99.6 1.9E-15 6.5E-20 127.7 9.2 74 112-185 28-106 (107)
100 2cqh_A IGF-II mRNA-binding pro 99.6 7.7E-16 2.6E-20 126.8 6.4 75 112-187 7-83 (93)
101 1oo0_B CG8781-PA, drosophila Y 99.6 2.2E-15 7.6E-20 128.0 9.4 76 111-186 24-105 (110)
102 2dgp_A Bruno-like 4, RNA bindi 99.6 2E-15 6.9E-20 127.3 8.9 77 111-187 11-96 (106)
103 2nlw_A Eukaryotic translation 99.6 2.3E-15 7.9E-20 127.1 9.2 76 112-187 14-100 (105)
104 1nu4_A U1A RNA binding domain; 99.6 2.2E-15 7.5E-20 124.9 8.7 77 112-188 7-90 (97)
105 3ns6_A Eukaryotic translation 99.6 7.4E-16 2.5E-20 129.0 5.9 76 112-187 5-93 (100)
106 2cpi_A CCR4-NOT transcription 99.6 1.7E-15 5.9E-20 129.2 8.1 79 111-189 13-103 (111)
107 2do0_A HnRNP M, heterogeneous 99.6 3.2E-15 1.1E-19 127.7 9.5 75 112-186 14-93 (114)
108 2dis_A Unnamed protein product 99.6 2.2E-15 7.5E-20 127.7 8.3 77 112-188 7-93 (109)
109 2dhg_A TRNA selenocysteine ass 99.6 1.9E-15 6.4E-20 127.0 7.5 76 112-187 8-90 (104)
110 2kxn_B Transformer-2 protein h 99.6 2.8E-15 9.6E-20 131.6 8.9 76 112-187 45-126 (129)
111 2i2y_A Fusion protein consists 99.6 4.1E-15 1.4E-19 133.6 10.3 79 109-187 69-148 (150)
112 3ucg_A Polyadenylate-binding p 99.6 2.7E-15 9.4E-20 122.1 8.3 74 113-187 6-85 (89)
113 2cpe_A RNA-binding protein EWS 99.6 2.8E-15 9.7E-20 128.0 8.7 77 111-187 13-103 (113)
114 1wi8_A EIF-4B, eukaryotic tran 99.6 4.2E-15 1.5E-19 125.0 9.6 74 112-187 14-94 (104)
115 1x5o_A RNA binding motif, sing 99.6 9.8E-15 3.4E-19 124.8 12.0 77 111-187 23-112 (114)
116 2cq2_A Hypothetical protein LO 99.6 2.3E-15 7.7E-20 128.9 7.9 74 112-185 24-104 (114)
117 2kt5_A RNA and export factor-b 99.6 5.8E-15 2E-19 128.3 10.5 77 112-188 34-115 (124)
118 1x4e_A RNA binding motif, sing 99.6 1.1E-15 3.9E-20 123.5 5.5 74 112-185 4-83 (85)
119 4fxv_A ELAV-like protein 1; RN 99.6 5.9E-15 2E-19 123.4 10.0 80 186-269 18-98 (99)
120 3p5t_L Cleavage and polyadenyl 99.6 1E-15 3.4E-20 125.5 5.2 74 114-187 2-83 (90)
121 1u6f_A Tcubp1, RNA-binding pro 99.6 5.1E-15 1.8E-19 131.1 9.9 78 110-187 39-122 (139)
122 2j76_E EIF-4B, EIF4B, eukaryot 99.6 2.3E-15 7.7E-20 126.0 7.1 76 110-187 16-98 (100)
123 2e5i_A Heterogeneous nuclear r 99.6 1.3E-14 4.4E-19 126.3 12.1 76 113-188 25-103 (124)
124 2krb_A Eukaryotic translation 99.6 1.8E-15 6.3E-20 121.4 6.2 69 113-181 1-80 (81)
125 3s7r_A Heterogeneous nuclear r 99.6 4.8E-15 1.7E-19 120.3 8.8 73 111-184 9-87 (87)
126 2cqd_A RNA-binding region cont 99.6 5.9E-15 2E-19 126.6 9.8 74 112-186 16-95 (116)
127 1p1t_A Cleavage stimulation fa 99.6 3E-15 1E-19 125.7 7.6 75 113-187 8-88 (104)
128 2cq4_A RNA binding motif prote 99.6 4.4E-15 1.5E-19 127.0 8.4 74 112-186 24-103 (114)
129 1h2v_Z 20 kDa nuclear CAP bind 99.6 5.6E-15 1.9E-19 133.6 9.5 78 109-186 35-118 (156)
130 2dng_A Eukaryotic translation 99.6 7.2E-15 2.5E-19 123.4 9.1 74 112-187 14-93 (103)
131 2hzc_A Splicing factor U2AF 65 99.6 4.5E-15 1.5E-19 120.3 7.5 71 112-183 5-86 (87)
132 1uaw_A Mouse-musashi-1; RNP-ty 99.6 3.1E-15 1.1E-19 118.4 6.2 70 114-184 1-76 (77)
133 3beg_B Splicing factor, argini 99.6 4.5E-15 1.5E-19 127.5 7.6 73 113-186 16-93 (115)
134 2rs2_A Musashi-1, RNA-binding 99.6 7.8E-15 2.7E-19 124.8 9.0 78 109-187 21-104 (109)
135 2cqp_A RNA-binding protein 12; 99.6 3.2E-15 1.1E-19 124.2 6.3 75 112-186 14-94 (98)
136 2cpx_A Hypothetical protein FL 99.6 1.2E-14 4E-19 124.4 10.0 77 111-187 23-105 (115)
137 2ek1_A RNA-binding protein 12; 99.6 2.2E-15 7.4E-20 124.4 5.2 74 113-186 15-94 (95)
138 2dgw_A Probable RNA-binding pr 99.5 1.1E-14 3.7E-19 119.3 9.0 74 112-187 9-87 (91)
139 1x4b_A Heterogeneous nuclear r 99.5 7.8E-15 2.7E-19 125.9 8.5 75 112-187 26-106 (116)
140 3zzy_A Polypyrimidine tract-bi 99.5 1.4E-14 4.8E-19 126.8 10.0 76 113-188 28-107 (130)
141 2mss_A Protein (musashi1); RNA 99.5 4.9E-15 1.7E-19 116.8 6.3 69 115-184 1-75 (75)
142 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 1.9E-14 6.5E-19 127.2 10.9 73 112-184 62-140 (140)
143 3n9u_C Cleavage and polyadenyl 99.5 7.1E-15 2.4E-19 133.3 8.2 76 112-187 54-137 (156)
144 2fc9_A NCL protein; structure 99.5 1.6E-14 5.3E-19 120.8 9.5 76 112-187 14-91 (101)
145 1rk8_A CG8781-PA, CG8781-PA pr 99.5 9.1E-15 3.1E-19 133.6 8.8 76 112-187 71-152 (165)
146 2jwn_A Embryonic polyadenylate 99.5 3.2E-15 1.1E-19 129.8 5.3 75 112-187 35-115 (124)
147 2bz2_A Negative elongation fac 99.5 1.6E-14 5.6E-19 125.3 9.5 75 111-187 37-111 (121)
148 2e44_A Insulin-like growth fac 99.5 1.4E-14 4.9E-19 119.7 8.7 76 112-187 14-92 (96)
149 2diu_A KIAA0430 protein; struc 99.5 2.4E-14 8.2E-19 117.2 9.8 76 114-193 10-90 (96)
150 2m2b_A RNA-binding protein 10; 99.5 8.4E-15 2.9E-19 128.7 7.7 77 111-188 21-109 (131)
151 2cpy_A RNA-binding protein 12; 99.5 1.1E-14 3.6E-19 124.9 7.8 75 112-187 14-94 (114)
152 2e5g_A U6 snRNA-specific termi 99.5 1.5E-14 5.2E-19 119.3 8.4 74 112-186 7-81 (94)
153 2lea_A Serine/arginine-rich sp 99.5 8.4E-15 2.9E-19 129.6 7.3 76 112-187 46-127 (135)
154 2lxi_A RNA-binding protein 10; 99.5 6.3E-15 2.2E-19 121.2 6.0 82 187-271 1-84 (91)
155 2dh8_A DAZ-associated protein 99.5 6.2E-15 2.1E-19 124.1 5.9 75 112-187 15-95 (105)
156 1wg5_A Heterogeneous nuclear r 99.5 2.8E-14 9.5E-19 120.2 9.9 75 112-187 14-94 (104)
157 3pgw_S U1-70K; protein-RNA com 99.5 4.6E-15 1.6E-19 156.2 6.1 82 186-271 101-183 (437)
158 2kn4_A Immunoglobulin G-bindin 99.5 2.9E-14 9.9E-19 129.0 10.1 77 111-187 68-150 (158)
159 2ki2_A SS-DNA binding protein 99.5 3.4E-15 1.2E-19 122.0 3.5 74 114-188 2-81 (90)
160 3s8s_A Histone-lysine N-methyl 99.5 4.9E-14 1.7E-18 120.2 10.5 83 185-271 4-87 (110)
161 1sjr_A Polypyrimidine tract-bi 99.5 3.1E-14 1.1E-18 129.3 9.7 76 113-188 46-125 (164)
162 2cqg_A TDP-43, TAR DNA-binding 99.5 4.1E-14 1.4E-18 118.6 9.8 74 112-187 14-93 (103)
163 2fc8_A NCL protein; structure 99.5 3E-14 1E-18 119.2 8.5 77 111-187 13-92 (102)
164 1fjc_A Nucleolin RBD2, protein 99.5 9.9E-15 3.4E-19 120.7 5.4 77 111-187 14-91 (96)
165 1wez_A HnRNP H', FTP-3, hetero 99.5 2.4E-14 8.2E-19 120.4 7.6 72 113-186 15-91 (102)
166 1wel_A RNA-binding protein 12; 99.5 9.2E-15 3.2E-19 127.1 5.2 75 112-187 24-104 (124)
167 2lea_A Serine/arginine-rich sp 99.5 8.1E-15 2.8E-19 129.7 4.7 117 150-271 5-128 (135)
168 2db1_A Heterogeneous nuclear r 99.5 2.1E-14 7.2E-19 123.9 7.2 74 112-186 16-97 (118)
169 1fj7_A Nucleolin RBD1, protein 99.5 5.3E-14 1.8E-18 117.5 9.0 75 112-187 16-95 (101)
170 2hgl_A HNRPF protein, heteroge 99.5 2.2E-14 7.6E-19 127.0 7.0 74 112-186 43-124 (136)
171 3q2s_C Cleavage and polyadenyl 99.5 1.9E-14 6.4E-19 138.8 7.0 76 112-187 67-150 (229)
172 2lmi_A GRSF-1, G-rich sequence 99.5 1.9E-14 6.4E-19 121.9 6.0 75 111-186 9-91 (107)
173 1iqt_A AUF1, heterogeneous nuc 99.5 1.4E-14 4.8E-19 114.0 4.7 69 115-184 1-75 (75)
174 2dnh_A Bruno-like 5, RNA bindi 99.5 1.2E-13 4.2E-18 116.0 10.8 86 186-272 14-99 (105)
175 2lkz_A RNA-binding protein 5; 99.5 2.4E-14 8.3E-19 118.8 6.3 83 187-269 9-94 (95)
176 3egn_A RNA-binding protein 40; 99.5 1.9E-14 6.6E-19 128.1 5.9 77 111-187 43-130 (143)
177 3d2w_A TAR DNA-binding protein 99.5 7.7E-14 2.6E-18 114.2 8.9 72 112-187 10-84 (89)
178 4f25_A Polyadenylate-binding p 99.5 9.1E-14 3.1E-18 119.3 9.4 81 187-272 5-85 (115)
179 2lcw_A RNA-binding protein FUS 99.2 3.1E-15 1.1E-19 128.5 0.0 77 111-187 5-95 (116)
180 1wf0_A TDP-43, TAR DNA-binding 99.5 3.6E-14 1.2E-18 115.5 6.4 74 112-187 4-78 (88)
181 1rk8_A CG8781-PA, CG8781-PA pr 99.5 8.7E-14 3E-18 127.1 9.5 113 154-270 11-152 (165)
182 2do4_A Squamous cell carcinoma 99.5 2.3E-13 7.8E-18 113.4 11.2 83 185-271 15-97 (100)
183 2dnn_A RNA-binding protein 12; 99.5 8.8E-14 3E-18 118.4 8.7 72 113-186 16-92 (109)
184 3md1_A Nuclear and cytoplasmic 99.5 2.3E-13 8E-18 109.1 10.5 80 187-270 1-81 (83)
185 2d9p_A Polyadenylate-binding p 99.5 2.1E-13 7E-18 114.3 10.4 82 186-272 14-95 (103)
186 3u1l_A PRE-mRNA-splicing facto 99.5 6.4E-14 2.2E-18 135.3 8.1 77 111-187 132-229 (240)
187 1whw_A Hypothetical protein ri 99.5 2.1E-13 7.3E-18 113.3 10.2 84 185-272 6-90 (99)
188 2dnz_A Probable RNA-binding pr 99.5 2.6E-13 8.8E-18 111.8 10.4 84 185-272 3-87 (95)
189 2dha_A FLJ20171 protein; RRM d 99.5 9.5E-14 3.3E-18 120.8 7.9 73 113-186 23-104 (123)
190 2ywk_A Putative RNA-binding pr 99.5 2.4E-13 8.2E-18 112.0 9.7 80 185-268 14-93 (95)
191 2cpz_A CUG triplet repeat RNA- 99.5 2.9E-13 1E-17 115.8 10.6 83 186-272 24-107 (115)
192 2do0_A HnRNP M, heterogeneous 99.5 4.9E-13 1.7E-17 114.0 11.9 83 185-271 13-95 (114)
193 3bs9_A Nucleolysin TIA-1 isofo 99.4 2.6E-13 8.8E-18 109.8 9.4 81 185-269 4-85 (87)
194 2cqb_A Peptidyl-prolyl CIS-tra 99.4 2.1E-13 7.2E-18 114.0 9.1 84 185-272 10-94 (102)
195 3pgw_S U1-70K; protein-RNA com 99.4 1.4E-13 4.7E-18 144.9 9.8 77 111-187 100-182 (437)
196 2dnl_A Cytoplasmic polyadenyla 99.4 2.3E-13 7.9E-18 116.5 9.4 71 112-185 7-86 (114)
197 2cqc_A Arginine/serine-rich sp 99.4 4.5E-13 1.5E-17 110.3 10.8 80 185-268 13-93 (95)
198 1x5t_A Splicing factor 3B subu 99.4 2E-13 6.9E-18 112.7 8.6 84 185-272 3-88 (96)
199 2hgn_A Heterogeneous nuclear r 99.4 5.2E-14 1.8E-18 125.1 5.3 73 113-187 46-123 (139)
200 2cq0_A Eukaryotic translation 99.4 3.3E-13 1.1E-17 113.1 9.8 84 185-272 13-97 (103)
201 1sjq_A Polypyrimidine tract-bi 99.4 1.8E-13 6.3E-18 115.3 8.1 79 185-271 14-93 (105)
202 2cph_A RNA binding motif prote 99.4 3.1E-13 1.1E-17 113.9 9.5 84 186-272 14-99 (107)
203 3mdf_A Peptidyl-prolyl CIS-tra 99.4 2.2E-13 7.7E-18 109.7 8.2 80 185-268 5-85 (85)
204 3md3_A Nuclear and cytoplasmic 99.4 2.9E-13 1E-17 122.0 9.9 76 110-185 84-165 (166)
205 3p5t_L Cleavage and polyadenyl 99.4 1.6E-13 5.4E-18 112.3 7.3 80 188-271 2-84 (90)
206 2dhg_A TRNA selenocysteine ass 99.4 3.2E-13 1.1E-17 113.3 9.4 84 185-272 7-92 (104)
207 2xs2_A Deleted in azoospermia- 99.4 5.1E-14 1.7E-18 117.8 4.3 74 112-187 8-86 (102)
208 2cpf_A RNA binding motif prote 99.4 4E-13 1.4E-17 111.4 9.8 84 185-272 3-90 (98)
209 2dgs_A DAZ-associated protein 99.4 5E-13 1.7E-17 111.1 10.2 83 185-272 8-91 (99)
210 2dgo_A Cytotoxic granule-assoc 99.4 8.5E-13 2.9E-17 112.8 11.9 83 186-272 14-97 (115)
211 4f02_A Polyadenylate-binding p 99.4 2E-13 6.8E-18 129.7 8.7 75 112-186 102-180 (213)
212 2fy1_A RNA-binding motif prote 99.4 4.1E-13 1.4E-17 115.4 9.8 84 185-272 5-88 (116)
213 3ulh_A THO complex subunit 4; 99.4 4.1E-13 1.4E-17 113.2 9.5 80 185-268 27-106 (107)
214 2cq3_A RNA-binding protein 9; 99.4 7E-13 2.4E-17 111.0 10.8 82 186-272 14-95 (103)
215 2e5h_A Zinc finger CCHC-type a 99.4 4.5E-13 1.5E-17 110.1 9.4 80 185-268 14-94 (94)
216 2x1f_A MRNA 3'-END-processing 99.4 4E-13 1.4E-17 111.1 9.2 82 186-271 1-83 (96)
217 2dgp_A Bruno-like 4, RNA bindi 99.4 2.6E-13 8.8E-18 114.3 7.9 86 186-272 12-98 (106)
218 3nmr_A Cugbp ELAV-like family 99.4 1.5E-13 5.1E-18 125.2 6.7 119 187-306 3-124 (175)
219 3r27_A HnRNP L, heterogeneous 99.4 4.5E-13 1.5E-17 111.9 9.0 80 184-270 18-97 (100)
220 1x4h_A RNA-binding protein 28; 99.4 7.5E-13 2.5E-17 112.3 10.6 85 185-272 13-103 (111)
221 2hgm_A HNRPF protein, heteroge 99.4 2E-13 6.7E-18 119.2 7.0 73 112-186 41-120 (126)
222 3ns6_A Eukaryotic translation 99.4 1.1E-13 3.8E-18 115.7 5.2 80 187-270 6-93 (100)
223 2qfj_A FBP-interacting repress 99.4 4.1E-13 1.4E-17 126.8 9.8 77 111-187 123-205 (216)
224 1x5u_A Splicing factor 3B subu 99.4 3.9E-13 1.3E-17 112.9 8.6 84 185-272 13-97 (105)
225 1x5s_A Cold-inducible RNA-bind 99.4 2.8E-13 9.5E-18 113.2 7.3 84 185-272 10-94 (102)
226 1p27_B RNA-binding protein 8A; 99.4 6.6E-13 2.3E-17 111.7 9.5 81 186-270 22-103 (106)
227 2dnm_A SRP46 splicing factor; 99.4 3.7E-13 1.3E-17 112.7 7.8 82 186-271 12-94 (103)
228 2cqi_A Nucleolysin TIAR; RNA r 99.4 9.8E-13 3.4E-17 110.1 10.4 83 185-272 13-95 (103)
229 1s79_A Lupus LA protein; RRM, 99.4 4E-13 1.4E-17 113.1 7.9 80 186-270 10-89 (103)
230 2dgv_A HnRNP M, heterogeneous 99.4 7.9E-13 2.7E-17 108.2 9.6 82 185-271 6-87 (92)
231 2cq1_A PTB-like protein L; RRM 99.4 7.5E-13 2.6E-17 111.1 9.4 79 185-271 13-92 (101)
232 1x5o_A RNA binding motif, sing 99.4 9.6E-13 3.3E-17 112.3 10.0 84 185-269 23-111 (114)
233 2g4b_A Splicing factor U2AF 65 99.4 4.2E-13 1.4E-17 122.1 8.2 73 112-184 93-171 (172)
234 2jrs_A RNA-binding protein 39; 99.4 8.2E-13 2.8E-17 112.0 9.4 81 186-270 25-106 (108)
235 2kxn_B Transformer-2 protein h 99.4 7.6E-13 2.6E-17 116.0 9.4 82 185-270 44-126 (129)
236 2div_A TRNA selenocysteine ass 99.4 7.7E-13 2.6E-17 109.9 8.9 82 185-270 7-94 (99)
237 2dis_A Unnamed protein product 99.4 3.9E-13 1.3E-17 113.7 7.2 87 184-273 5-95 (109)
238 2la6_A RNA-binding protein FUS 99.4 1.1E-12 3.9E-17 109.0 9.7 79 185-267 11-98 (99)
239 2cpe_A RNA-binding protein EWS 99.4 9E-13 3.1E-17 112.3 9.3 84 185-272 13-105 (113)
240 2dit_A HIV TAT specific factor 99.4 1.4E-12 4.6E-17 111.4 10.3 81 111-191 13-106 (112)
241 3pgw_A U1-A; protein-RNA compl 99.4 9.4E-13 3.2E-17 130.0 10.4 76 110-185 204-281 (282)
242 1fxl_A Paraneoplastic encephal 99.4 6.2E-13 2.1E-17 119.9 8.3 115 186-305 1-116 (167)
243 2adc_A Polypyrimidine tract-bi 99.4 2E-12 6.7E-17 124.2 12.3 76 111-186 149-227 (229)
244 2dng_A Eukaryotic translation 99.4 1.5E-12 5.2E-17 109.0 10.1 82 185-272 13-95 (103)
245 1qm9_A Polypyrimidine tract-bi 99.4 1.4E-12 4.9E-17 121.7 11.1 76 111-186 118-196 (198)
246 1b7f_A Protein (SXL-lethal pro 99.4 1.3E-12 4.4E-17 118.2 10.3 74 111-184 87-168 (168)
247 2yh0_A Splicing factor U2AF 65 99.4 6.2E-13 2.1E-17 123.8 8.4 77 111-187 112-194 (198)
248 2dgw_A Probable RNA-binding pr 99.4 1.5E-12 5E-17 106.5 9.7 79 186-270 9-87 (91)
249 2ad9_A Polypyrimidine tract-bi 99.4 8.4E-13 2.9E-17 113.9 8.6 79 185-271 29-108 (119)
250 3ucg_A Polyadenylate-binding p 99.4 9.4E-13 3.2E-17 106.9 8.4 78 187-269 6-84 (89)
251 1u6f_A Tcubp1, RNA-binding pro 99.4 1.3E-12 4.5E-17 115.5 9.8 83 186-272 41-124 (139)
252 2dh8_A DAZ-associated protein 99.4 1.3E-12 4.5E-17 109.7 9.4 83 185-272 14-97 (105)
253 1oo0_B CG8781-PA, drosophila Y 99.4 1E-12 3.4E-17 111.4 8.6 82 185-270 24-106 (110)
254 2wbr_A GW182, gawky, LD47780P; 99.4 6.6E-13 2.2E-17 107.5 7.0 74 186-268 6-79 (89)
255 2ek1_A RNA-binding protein 12; 99.4 8E-13 2.7E-17 108.8 7.8 79 186-268 14-93 (95)
256 1wi8_A EIF-4B, eukaryotic tran 99.4 1.2E-12 3.9E-17 110.0 8.7 82 185-272 13-96 (104)
257 2kt5_A RNA and export factor-b 99.4 1.3E-12 4.5E-17 113.3 9.2 81 186-270 34-114 (124)
258 1h2v_Z 20 kDa nuclear CAP bind 99.4 1.8E-12 6E-17 117.1 10.2 82 186-271 38-120 (156)
259 3s7r_A Heterogeneous nuclear r 99.4 2.5E-12 8.4E-17 104.2 9.9 78 185-267 9-87 (87)
260 1wex_A Hypothetical protein (r 99.4 1.9E-12 6.3E-17 109.2 9.5 79 185-271 13-92 (104)
261 3n9u_C Cleavage and polyadenyl 99.4 1.3E-12 4.5E-17 118.3 9.2 81 186-270 54-137 (156)
262 2cpi_A CCR4-NOT transcription 99.4 1.4E-12 4.7E-17 111.1 8.8 82 186-271 14-102 (111)
263 2dgx_A KIAA0430 protein; RRM d 99.4 1.5E-12 5.1E-17 107.8 8.7 79 186-270 8-90 (96)
264 2cqp_A RNA-binding protein 12; 99.4 1.1E-12 3.9E-17 108.6 7.9 80 186-269 14-94 (98)
265 3ex7_B RNA-binding protein 8A; 99.4 1.1E-12 3.8E-17 114.0 8.0 82 186-271 21-103 (126)
266 1x4d_A Matrin 3; structural ge 99.4 7E-13 2.4E-17 111.4 6.5 78 185-270 13-92 (102)
267 1p1t_A Cleavage stimulation fa 99.4 1.3E-12 4.6E-17 109.3 8.2 83 186-272 7-90 (104)
268 2cqg_A TDP-43, TAR DNA-binding 99.4 4.6E-12 1.6E-16 106.0 11.5 81 186-272 14-95 (103)
269 2pe8_A Splicing factor 45; RRM 99.4 2.1E-12 7.2E-17 109.1 9.3 76 111-186 6-93 (105)
270 4a8x_A RNA-binding protein wit 99.4 1E-12 3.5E-17 106.4 7.0 81 186-270 3-85 (88)
271 2cqd_A RNA-binding region cont 99.4 1.6E-12 5.4E-17 111.4 8.6 82 185-271 15-97 (116)
272 2jwn_A Embryonic polyadenylate 99.4 8.5E-13 2.9E-17 114.4 6.9 79 187-270 36-115 (124)
273 1wez_A HnRNP H', FTP-3, hetero 99.3 1.1E-12 3.8E-17 110.1 7.2 79 186-270 14-92 (102)
274 2db1_A Heterogeneous nuclear r 99.3 1.3E-12 4.3E-17 112.7 7.6 80 186-270 16-98 (118)
275 2hgl_A HNRPF protein, heteroge 99.3 1.2E-12 4.1E-17 115.8 7.5 80 186-270 43-125 (136)
276 1x4a_A Splicing factor, argini 99.3 2.9E-12 1E-16 108.4 9.7 81 185-271 20-100 (109)
277 2j76_E EIF-4B, EIF4B, eukaryot 99.3 8.6E-13 2.9E-17 110.1 6.2 80 185-270 17-98 (100)
278 1x4e_A RNA binding motif, sing 99.3 6.8E-13 2.3E-17 107.0 5.4 78 185-266 3-81 (85)
279 2mss_A Protein (musashi1); RNA 99.3 8.8E-13 3E-17 103.7 5.9 74 189-267 1-75 (75)
280 2cpy_A RNA-binding protein 12; 99.3 6.7E-13 2.3E-17 113.6 5.6 82 185-271 13-95 (114)
281 2fc9_A NCL protein; structure 99.3 2.6E-12 8.9E-17 107.1 9.1 80 185-271 13-92 (101)
282 2hgn_A Heterogeneous nuclear r 99.3 3.7E-13 1.3E-17 119.5 4.1 114 150-270 2-123 (139)
283 2nlw_A Eukaryotic translation 99.3 1.3E-12 4.3E-17 110.2 7.1 79 187-270 15-100 (105)
284 2khc_A Testis-specific RNP-typ 99.3 1.1E-12 3.9E-17 112.5 7.0 78 186-267 39-117 (118)
285 2cjk_A Nuclear polyadenylated 99.3 9.1E-13 3.1E-17 119.2 6.6 75 112-187 86-166 (167)
286 2err_A Ataxin-2-binding protei 99.3 1.7E-12 5.7E-17 110.2 7.7 80 186-270 28-107 (109)
287 1wg5_A Heterogeneous nuclear r 99.3 1.7E-12 5.9E-17 109.1 7.7 80 186-270 14-94 (104)
288 1uaw_A Mouse-musashi-1; RNP-ty 99.3 9.7E-13 3.3E-17 103.9 5.6 75 188-267 1-76 (77)
289 2dnn_A RNA-binding protein 12; 99.3 2.2E-12 7.5E-17 109.7 8.0 78 187-270 16-93 (109)
290 1x4f_A Matrin 3; structural ge 99.3 1.2E-12 4.2E-17 111.6 6.3 80 184-271 22-103 (112)
291 1x4b_A Heterogeneous nuclear r 99.3 3.5E-12 1.2E-16 109.2 9.2 81 187-272 27-108 (116)
292 1why_A Hypothetical protein ri 99.3 3.2E-12 1.1E-16 105.8 8.5 79 185-270 15-93 (97)
293 2cq4_A RNA binding motif prote 99.3 1.2E-12 4.1E-17 111.8 6.1 80 187-271 25-105 (114)
294 1x4c_A Splicing factor, argini 99.3 4.4E-12 1.5E-16 107.3 9.5 76 186-271 14-94 (108)
295 2m2b_A RNA-binding protein 10; 99.3 8.3E-13 2.8E-17 115.9 5.1 84 186-271 22-109 (131)
296 1fje_B Nucleolin RBD12, protei 99.3 1.6E-12 5.5E-17 118.8 7.1 77 111-187 97-174 (175)
297 2rs2_A Musashi-1, RNA-binding 99.3 3.7E-12 1.3E-16 108.1 8.9 82 185-271 23-105 (109)
298 2voo_A Lupus LA protein; RNA-b 99.3 2.2E-12 7.5E-17 121.0 8.1 74 112-186 108-186 (193)
299 2krb_A Eukaryotic translation 99.3 1E-12 3.4E-17 105.2 4.8 72 188-264 2-80 (81)
300 2ytc_A PRE-mRNA-splicing facto 99.3 3.2E-12 1.1E-16 103.0 7.7 74 186-267 11-84 (85)
301 2jvr_A Nucleolar protein 3; RN 99.3 2E-12 6.9E-17 110.3 6.8 86 177-269 15-104 (111)
302 2dnq_A RNA-binding protein 4B; 99.3 6.7E-12 2.3E-16 102.4 9.6 77 185-272 6-82 (90)
303 1l3k_A Heterogeneous nuclear r 99.3 3.1E-12 1.1E-16 118.8 8.3 117 185-306 11-133 (196)
304 2a3j_A U1 small nuclear ribonu 99.3 3.2E-12 1.1E-16 111.7 7.5 82 185-272 27-112 (127)
305 1x4g_A Nucleolysin TIAR; struc 99.3 5.7E-12 1.9E-16 106.7 8.8 79 185-272 23-101 (109)
306 3q2s_C Cleavage and polyadenyl 99.3 2.3E-12 7.9E-17 124.1 7.1 80 186-269 67-149 (229)
307 2j8a_A Histone-lysine N-methyl 99.3 1.9E-12 6.4E-17 111.9 5.7 74 114-187 3-96 (136)
308 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.3 5.2E-12 1.8E-16 111.4 8.7 78 186-267 62-140 (140)
309 1wel_A RNA-binding protein 12; 99.3 1.8E-12 6.1E-17 112.6 5.6 80 186-270 24-104 (124)
310 2cpj_A Non-POU domain-containi 99.3 4E-12 1.4E-16 105.6 7.5 78 185-271 13-90 (99)
311 2lmi_A GRSF-1, G-rich sequence 99.3 1.5E-12 5.1E-17 110.1 4.5 80 186-270 10-92 (107)
312 3lqv_A PRE-mRNA branch site pr 99.3 5.8E-12 2E-16 107.5 8.2 82 185-272 6-87 (115)
313 2hvz_A Splicing factor, argini 99.3 4.5E-12 1.5E-16 105.7 7.2 76 188-271 1-76 (101)
314 2ki2_A SS-DNA binding protein 99.3 1.1E-12 3.7E-17 107.0 3.3 79 188-271 2-81 (90)
315 2dha_A FLJ20171 protein; RRM d 99.3 2.7E-12 9.2E-17 111.6 5.8 80 186-270 22-105 (123)
316 2dgt_A RNA-binding protein 30; 99.3 1.4E-11 4.8E-16 100.9 9.8 76 185-271 8-83 (92)
317 2f3j_A RNA and export factor b 99.3 4.9E-12 1.7E-16 117.0 7.8 82 185-270 86-167 (177)
318 2la4_A Nuclear and cytoplasmic 99.3 5.9E-12 2E-16 104.9 7.4 75 186-269 26-100 (101)
319 3tyt_A Heterogeneous nuclear r 99.3 3.6E-12 1.2E-16 120.7 6.7 73 112-184 122-204 (205)
320 2dgu_A Heterogeneous nuclear r 99.3 1.1E-11 3.9E-16 103.7 9.0 76 186-272 10-85 (103)
321 2dnp_A RNA-binding protein 14; 99.3 1.1E-11 3.6E-16 101.2 8.3 76 185-271 7-82 (90)
322 2voo_A Lupus LA protein; RNA-b 99.3 2.5E-11 8.4E-16 113.8 11.9 109 158-271 63-188 (193)
323 2cq2_A Hypothetical protein LO 99.3 5.6E-12 1.9E-16 107.8 6.7 81 185-270 23-106 (114)
324 1whx_A Hypothetical protein ri 99.3 4.3E-12 1.5E-16 108.1 5.9 75 187-270 10-84 (111)
325 1nu4_A U1A RNA binding domain; 99.3 4E-12 1.4E-16 105.0 5.4 81 185-271 6-90 (97)
326 2e5j_A Methenyltetrahydrofolat 99.3 8.8E-12 3E-16 103.2 7.5 77 186-270 18-94 (97)
327 1fjc_A Nucleolin RBD2, protein 99.3 8.7E-12 3E-16 102.8 7.4 78 186-271 15-92 (96)
328 3tht_A Alkylated DNA repair pr 99.3 8.3E-12 2.8E-16 126.7 8.7 75 111-185 16-97 (345)
329 2cpx_A Hypothetical protein FL 99.3 7.9E-12 2.7E-16 106.6 7.2 84 185-272 23-107 (115)
330 2fc8_A NCL protein; structure 99.2 2.4E-11 8.4E-16 101.3 9.7 81 185-272 13-94 (102)
331 1fj7_A Nucleolin RBD1, protein 99.2 2E-12 6.7E-17 107.9 2.8 81 186-272 16-97 (101)
332 1wf1_A RNA-binding protein RAL 99.2 1E-11 3.5E-16 105.3 7.1 73 187-270 27-100 (110)
333 2jvo_A Nucleolar protein 3; nu 99.2 2.1E-11 7.3E-16 103.3 9.0 74 186-270 30-103 (108)
334 3v4m_A Splicing factor U2AF 65 99.2 1.3E-11 4.5E-16 104.2 7.4 75 112-186 4-96 (105)
335 2cqh_A IGF-II mRNA-binding pro 99.2 1.3E-11 4.3E-16 101.3 7.2 79 185-272 6-85 (93)
336 2xnq_A Nuclear polyadenylated 99.2 2.8E-11 9.5E-16 100.4 9.1 75 185-270 20-95 (97)
337 3egn_A RNA-binding protein 40; 99.2 1.2E-11 4E-16 110.0 7.3 84 184-271 42-131 (143)
338 2xs2_A Deleted in azoospermia- 99.2 7E-12 2.4E-16 104.7 5.3 79 186-270 8-86 (102)
339 2dnl_A Cytoplasmic polyadenyla 99.2 1.8E-11 6E-16 104.7 7.9 63 186-249 7-73 (114)
340 2cpd_A Apobec-1 stimulating pr 99.2 4.5E-11 1.5E-15 99.2 10.1 77 185-272 13-91 (99)
341 1iqt_A AUF1, heterogeneous nuc 99.2 4.1E-12 1.4E-16 99.7 3.3 73 189-266 1-74 (75)
342 2kvi_A Nuclear polyadenylated 99.2 1.5E-11 5E-16 101.7 6.8 76 184-270 7-83 (96)
343 3sde_A Paraspeckle component 1 99.2 1.1E-10 3.8E-15 114.2 14.2 104 186-305 21-124 (261)
344 1wg1_A KIAA1579 protein, homol 99.2 3.3E-11 1.1E-15 97.9 8.4 75 186-270 4-78 (88)
345 2lcw_A RNA-binding protein FUS 98.8 1.4E-12 4.7E-17 111.8 0.0 84 185-272 5-97 (116)
346 2hgm_A HNRPF protein, heteroge 99.2 7E-12 2.4E-16 109.3 4.3 78 186-269 41-120 (126)
347 1x5p_A Negative elongation fac 99.2 7.3E-11 2.5E-15 97.6 10.3 76 186-272 14-89 (97)
348 3d2w_A TAR DNA-binding protein 99.2 3.9E-11 1.3E-15 98.0 8.5 78 184-271 8-85 (89)
349 2e5g_A U6 snRNA-specific termi 99.2 4.8E-11 1.7E-15 98.1 8.7 77 186-271 7-83 (94)
350 3ue2_A Poly(U)-binding-splicin 99.2 2.9E-11 1E-15 104.2 7.6 75 112-186 19-108 (118)
351 3beg_B Splicing factor, argini 99.2 2.4E-11 8.1E-16 104.1 7.0 65 187-261 16-80 (115)
352 2e44_A Insulin-like growth fac 99.2 4E-11 1.4E-15 98.8 8.1 79 186-271 14-93 (96)
353 2d9o_A DNAJ (HSP40) homolog, s 99.2 1.2E-10 4E-15 97.4 10.2 73 113-187 10-90 (100)
354 1jmt_A Splicing factor U2AF 35 99.2 5.8E-12 2E-16 106.2 2.1 68 118-185 20-104 (104)
355 2pe8_A Splicing factor 45; RRM 99.2 1.1E-10 3.7E-15 98.5 9.7 82 185-270 6-94 (105)
356 1sjr_A Polypyrimidine tract-bi 99.2 7.8E-11 2.7E-15 106.9 8.9 79 188-271 47-125 (164)
357 2j8a_A Histone-lysine N-methyl 99.1 5.5E-11 1.9E-15 102.8 7.1 75 188-266 3-92 (136)
358 3zzy_A Polypyrimidine tract-bi 99.1 1.9E-10 6.4E-15 100.5 10.1 77 188-270 29-106 (130)
359 2hzc_A Splicing factor U2AF 65 99.1 7.1E-11 2.4E-15 95.3 6.8 72 185-266 4-86 (87)
360 2e5i_A Heterogeneous nuclear r 99.1 1.9E-10 6.4E-15 99.9 9.6 75 189-270 27-102 (124)
361 1wf0_A TDP-43, TAR DNA-binding 99.1 5.7E-11 2E-15 96.4 5.4 78 185-272 3-80 (88)
362 1owx_A Lupus LA protein, SS-B, 99.1 3.3E-10 1.1E-14 97.5 10.2 78 107-184 12-93 (121)
363 3s6e_A RNA-binding protein 39; 99.1 2.8E-10 9.4E-15 97.4 9.5 75 112-186 6-92 (114)
364 2diu_A KIAA0430 protein; struc 99.1 2.3E-10 7.9E-15 93.6 7.7 74 186-272 7-86 (96)
365 2bz2_A Negative elongation fac 99.1 2.4E-10 8.1E-15 98.9 8.0 75 186-271 38-112 (121)
366 3u1l_A PRE-mRNA-splicing facto 99.0 2.3E-10 7.9E-15 110.4 7.8 81 185-270 132-229 (240)
367 3v4m_A Splicing factor U2AF 65 99.0 4E-10 1.4E-14 95.0 7.3 82 185-270 3-97 (105)
368 1jmt_A Splicing factor U2AF 35 99.0 2.9E-10 1E-14 95.7 5.7 72 192-267 20-103 (104)
369 2dit_A HIV TAT specific factor 99.0 1.1E-09 3.9E-14 93.0 9.4 80 185-271 13-103 (112)
370 3ue2_A Poly(U)-binding-splicin 98.9 1.8E-09 6.2E-14 92.9 8.4 82 185-270 18-109 (118)
371 3tht_A Alkylated DNA repair pr 98.9 1.8E-09 6.2E-14 109.5 8.6 80 184-269 15-98 (345)
372 2dnr_A Synaptojanin-1; RRM dom 98.9 3E-09 1E-13 86.2 7.6 71 114-187 8-86 (91)
373 2d9o_A DNAJ (HSP40) homolog, s 98.9 8.4E-09 2.9E-13 86.0 10.4 82 176-271 10-91 (100)
374 3s6e_A RNA-binding protein 39; 98.7 2.8E-08 9.5E-13 84.9 7.3 79 186-271 6-94 (114)
375 1ufw_A Synaptojanin 2; RNP dom 98.7 2E-08 6.8E-13 81.8 5.5 69 114-185 16-93 (95)
376 1owx_A Lupus LA protein, SS-B, 98.7 4.6E-08 1.6E-12 84.1 7.9 79 185-270 16-96 (121)
377 3dxb_A Thioredoxin N-terminall 98.4 3.6E-07 1.2E-11 86.9 7.2 62 125-186 141-212 (222)
378 2dnr_A Synaptojanin-1; RRM dom 98.3 1.2E-06 4E-11 71.0 6.9 74 185-270 5-86 (91)
379 3dxb_A Thioredoxin N-terminall 98.3 5.3E-06 1.8E-10 78.6 12.2 107 154-270 101-213 (222)
380 2l9w_A U4/U6 snRNA-associated- 98.2 4.4E-06 1.5E-10 69.4 8.2 70 113-182 21-95 (117)
381 2dhx_A Poly (ADP-ribose) polym 98.2 1.2E-05 4.2E-10 66.1 10.6 86 112-200 7-99 (104)
382 1ufw_A Synaptojanin 2; RNP dom 98.1 4.2E-06 1.4E-10 68.1 5.6 73 184-268 12-93 (95)
383 1wey_A Calcipressin 1; structu 97.7 3.4E-05 1.1E-09 63.8 5.6 74 113-186 5-83 (104)
384 2l9w_A U4/U6 snRNA-associated- 97.2 0.00081 2.8E-08 55.9 7.3 71 187-266 21-96 (117)
385 1uw4_A UPF3X; nonsense mediate 97.1 0.0013 4.4E-08 53.3 7.6 63 114-176 2-72 (91)
386 1whv_A Poly(A)-specific ribonu 96.9 0.0025 8.6E-08 51.8 7.5 54 114-170 17-70 (100)
387 1wwh_A Nucleoporin 35, nucleop 96.8 0.0032 1.1E-07 53.4 7.8 71 112-184 23-94 (119)
388 2dhx_A Poly (ADP-ribose) polym 96.6 0.0084 2.9E-07 49.3 8.4 74 187-272 8-86 (104)
389 3ctr_A Poly(A)-specific ribonu 96.2 0.0027 9.1E-08 51.8 3.3 53 115-170 8-60 (101)
390 2l08_A Regulator of nonsense t 96.1 0.011 3.7E-07 48.3 6.4 73 113-185 9-94 (97)
391 1uw4_A UPF3X; nonsense mediate 96.0 0.035 1.2E-06 44.8 8.8 71 188-259 2-75 (91)
392 3pq1_A Poly(A) RNA polymerase; 96.0 0.003 1E-07 66.1 3.0 54 113-167 53-107 (464)
393 1wwh_A Nucleoporin 35, nucleop 95.7 0.023 7.9E-07 48.1 6.8 84 175-268 12-95 (119)
394 3p3d_A Nucleoporin 53; structu 95.4 0.0089 3E-07 51.4 3.4 71 113-185 7-97 (132)
395 1wey_A Calcipressin 1; structu 95.2 0.058 2E-06 44.4 7.4 75 187-270 5-84 (104)
396 1whv_A Poly(A)-specific ribonu 95.2 0.047 1.6E-06 44.3 6.7 54 188-249 17-70 (100)
397 3ctr_A Poly(A)-specific ribonu 93.8 0.059 2E-06 43.9 4.2 54 188-249 7-60 (101)
398 2l08_A Regulator of nonsense t 92.4 0.18 6.1E-06 41.0 5.2 73 187-260 9-84 (97)
399 3pq1_A Poly(A) RNA polymerase; 91.6 0.094 3.2E-06 54.8 3.4 55 187-246 53-107 (464)
400 3p3d_A Nucleoporin 53; structu 89.6 0.23 7.9E-06 42.6 3.4 78 187-270 7-99 (132)
401 3d45_A Poly(A)-specific ribonu 85.6 1.7 5.7E-05 46.0 7.9 56 113-171 440-495 (507)
402 1f5n_A Interferon-induced guan 68.0 47 0.0016 35.6 12.8 15 116-130 125-139 (592)
403 3d45_A Poly(A)-specific ribonu 63.9 14 0.00046 39.0 7.5 54 188-249 441-494 (507)
404 4eyt_A Telomerase associated p 57.2 59 0.002 25.6 8.2 70 110-183 9-78 (129)
405 1cn3_F Fragment of coat protei 57.2 5.5 0.00019 23.6 1.7 12 487-498 2-13 (29)
406 1f5n_A Interferon-induced guan 46.3 91 0.0031 33.3 10.5 7 297-303 426-432 (592)
407 2i1j_A Moesin; FERM, coiled-co 41.2 37 0.0013 36.2 6.4 10 380-389 372-381 (575)
408 2g0c_A ATP-dependent RNA helic 40.6 18 0.00061 27.2 2.8 67 115-184 2-74 (76)
409 3lpe_A Putative transcription 33.7 1.6E+02 0.0053 23.0 7.5 52 139-209 39-91 (92)
410 1k2d_P MBP peptide, myelin bas 29.6 26 0.00089 20.3 1.5 17 471-487 4-20 (26)
411 3lay_A Zinc resistance-associa 26.2 2.5E+02 0.0085 24.9 8.2 8 390-397 136-143 (175)
412 4e8u_A Putative uncharacterize 23.3 1.1E+02 0.0037 27.2 5.2 49 187-237 12-71 (172)
413 3ts2_A Protein LIN-28 homolog 23.2 15 0.00052 31.9 -0.3 28 128-157 2-29 (148)
414 3fry_A Probable copper-exporti 20.1 1.4E+02 0.0046 21.3 4.6 54 114-168 7-60 (73)
No 1
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=100.00 E-value=4.4e-39 Score=317.60 Aligned_cols=230 Identities=49% Similarity=0.854 Sum_probs=209.1
Q ss_pred CCCCCCCCCCCccccCcCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCcc
Q psy93 94 PTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHV 173 (503)
Q Consensus 94 ~~~~~p~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~ 173 (503)
.++++++... +.....+..++|||+|||+++|+++|+++|+.||.|..|.|.+++|||||+|.+.++|.+|+..||+..
T Consensus 4 ~~~~~~~~~~-p~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~ 82 (261)
T 3sde_A 4 FTIDIKSFLK-PGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTI 82 (261)
T ss_dssp ---CCCCCCC-TTCCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCE
T ss_pred cccCccccCC-CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcE
Confidence 4455544443 355667788999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCceEEEEecccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCee
Q psy93 174 LKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCF 253 (503)
Q Consensus 174 l~g~~l~V~~a~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~ 253 (503)
|.|++|.|.++.+.++|||.|||..+|+++|+++|+.||.|..|.|+.+.++.+++||||+|.+.++|.+|+..||++.+
T Consensus 83 i~g~~l~v~~a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~ 162 (261)
T 3sde_A 83 LKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAF 162 (261)
T ss_dssp ETTEECEEEECCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCE
T ss_pred ECCceeEeeecccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred eecCCCCeEEeecCCccccccCCcccccCCCCchhhhhhccCcccCCCCCcchhhhhhhHHHHHHHHHHHHH
Q psy93 254 FLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEM 325 (503)
Q Consensus 254 ~~~~~~rpl~V~~~~~~~~~~~~~~k~i~k~~~~~~kere~~~rf~~~g~~e~e~~~r~k~l~e~ee~e~e~ 325 (503)
++...+++|.|.++...++.+..+.+.+. +.+.+.+++..+++|+.+++++++++++|+.+.++++.+.+.
T Consensus 163 ~~~~~~r~i~v~~~~~~~~~~~~~~~~~~-~~~~~~~~r~~~p~~~~pgs~~~~~~~~~~~~~~~~~~~~~~ 233 (261)
T 3sde_A 163 LLTTTPRPVIVEPMEQFDDEDGLPEKLMQ-KTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQ 233 (261)
T ss_dssp ESSSSCCBCEEEECCCEESSSCCCGGGSC-CCHHHHHHHTSCSEECCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCCceEEEeeccccCccCCCcchhhh-cchhhhhhccCCCCCCCCCcccccccchHHHHHHHHHHHHHH
Confidence 88888999999999999888888888776 567889999999999999999999999999998887655443
No 2
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.96 E-value=1.7e-29 Score=241.35 Aligned_cols=156 Identities=27% Similarity=0.458 Sum_probs=142.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
+.++|||+|||+++|+++|+++|++||+|.+|+|+++ +|||||+|.+.++|.+||..|++..+.|+.|+|.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 4678999999999999999999999999999999753 5799999999999999999999999999999999986
Q ss_pred c--------ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecC
Q psy93 186 I--------NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQ 257 (503)
Q Consensus 186 ~--------~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~ 257 (503)
. ..+|||.|||..+++++|+++|+.||.|..|.|+.|. +.+++||||+|.+.++|.+|+..|| +..+
T Consensus 94 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~-~~~~g~~fV~f~~~~~a~~Ai~~ln-g~~~--- 168 (213)
T 4f02_A 94 RDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMN-GMLL--- 168 (213)
T ss_dssp CCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESSHHHHHHHHHHHT-TCEE---
T ss_pred ccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC-CCCceEEEEEeCCHHHHHHHHHHhC-CCEE---
Confidence 3 4689999999999999999999999999999999885 3479999999999999999999997 6666
Q ss_pred CCCeEEeecCCcccc
Q psy93 258 SLRPVIVEPLELTDE 272 (503)
Q Consensus 258 ~~rpl~V~~~~~~~~ 272 (503)
.+++|.|.++.+..+
T Consensus 169 ~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 169 NDRKVFVGRFKSRKE 183 (213)
T ss_dssp TTEECEEEECCCHHH
T ss_pred CCEEEEEEEcCCCcc
Confidence 689999999876543
No 3
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=3.1e-29 Score=230.04 Aligned_cols=156 Identities=19% Similarity=0.323 Sum_probs=141.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEe--------cCCCceEEeeCCHHHHHHHHHHhCCcccc---CceEE
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFIN--------KEKMFGFIRMDYKHNADKAKAKLDGHVLK---GRSLK 180 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~---g~~l~ 180 (503)
++++|||+|||+++|+++|+++|++||+|.+|.|+ ++++||||+|.+.++|.+|+..|++..+. +++|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999986 35689999999999999999999998776 68888
Q ss_pred EEecc-------cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCee
Q psy93 181 IRFAP-------INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCF 253 (503)
Q Consensus 181 V~~a~-------~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~ 253 (503)
|.++. ..++|||+|||..+++++|+++|+.||.|..+.++.+.++.+++||||+|.+.++|.+|+..|| +..
T Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~-g~~ 160 (175)
T 3nmr_A 82 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMH-QAQ 160 (175)
T ss_dssp EEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT-TSC
T ss_pred EccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhc-CCc
Confidence 88875 4578999999999999999999999999999999999889999999999999999999999998 544
Q ss_pred eecCCCCeEEeecCC
Q psy93 254 FLTQSLRPVIVEPLE 268 (503)
Q Consensus 254 ~~~~~~rpl~V~~~~ 268 (503)
+...++++|.|.+++
T Consensus 161 ~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 161 TMEGCSSPMVVKFAD 175 (175)
T ss_dssp CCTTCSSCCEEEECC
T ss_pred ccCCCCCCeEEEecC
Confidence 444446999999874
No 4
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=2.5e-28 Score=242.65 Aligned_cols=192 Identities=22% Similarity=0.336 Sum_probs=170.6
Q ss_pred CcCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccccc
Q psy93 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINA 188 (503)
Q Consensus 109 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~~~ 188 (503)
...++++|||+|||+++|+++|+++|+.|| |.+|.+.+++|||||+|.+.++|.+|+..||+..|.|++|.|.++++.+
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 96 (284)
T 3smz_A 18 QFRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDA 96 (284)
T ss_dssp HHHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCSC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCCC
Confidence 345678999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred ceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeecC
Q psy93 189 AIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPL 267 (503)
Q Consensus 189 ~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~~ 267 (503)
+|||+|||..+++++|.++|+.||.|..+.++.+ .++.+++||||+|.+.++|.+|+..|+ +..+ .+++|.|.++
T Consensus 97 ~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-~~~~---~g~~i~v~~a 172 (284)
T 3smz_A 97 LLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLL-GKPL---GPRTLYVHWT 172 (284)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-TCEE---TTEECEEEEC
T ss_pred EEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhC-CCEe---CCcEEEEEEC
Confidence 9999999999999999999999999999999988 588999999999999999999999997 6655 6899999998
Q ss_pred CccccccC--CcccccCCCCchhh-hhhccCcccCCCCCcc
Q psy93 268 ELTDEIDG--LSERTINKKTPEFY-KQRQVGPRFATVNSFE 305 (503)
Q Consensus 268 ~~~~~~~~--~~~k~i~k~~~~~~-kere~~~rf~~~g~~e 305 (503)
........ ....++..+++... ++..+...|..+|.+.
T Consensus 173 ~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~ 213 (284)
T 3smz_A 173 DAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPT 213 (284)
T ss_dssp CGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCS
T ss_pred CCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeE
Confidence 77653322 23345666777763 7788888898888764
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.96 E-value=2.8e-28 Score=222.38 Aligned_cols=154 Identities=20% Similarity=0.408 Sum_probs=139.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
++++|||+|||+++|+++|+++|+.||+|.+|.++++ +|||||+|.+.++|.+|+..|++..+.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 4679999999999999999999999999999998643 5899999999999999999999999999999999986
Q ss_pred c------ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCC
Q psy93 186 I------NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQS 258 (503)
Q Consensus 186 ~------~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~-~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~ 258 (503)
+ .++|+|.|||..+++++|+++|+.||.|..+.++.+. ++.+++||||+|.+.++|.+|+..|| +..+ ...
T Consensus 82 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-g~~~-~g~ 159 (168)
T 1b7f_A 82 PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALN-NVIP-EGG 159 (168)
T ss_dssp CCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-TCCC-TTC
T ss_pred CCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhc-CCEe-cCC
Confidence 4 5789999999999999999999999999999999985 88999999999999999999999997 5544 223
Q ss_pred CCeEEeecC
Q psy93 259 LRPVIVEPL 267 (503)
Q Consensus 259 ~rpl~V~~~ 267 (503)
.++|.|.++
T Consensus 160 ~~~l~V~~A 168 (168)
T 1b7f_A 160 SQPLSVRLA 168 (168)
T ss_dssp SSCCEEEEC
T ss_pred CeEEEEEeC
Confidence 488888764
No 6
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=2e-28 Score=233.03 Aligned_cols=154 Identities=14% Similarity=0.173 Sum_probs=135.1
Q ss_pred CCcEEEEcCCC-CCCCHHHHHHhhccCCCeEEEEEecC-CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc---
Q psy93 112 NNCRLYLGNIG-GDITENDIIELFKPYGETQELFINKE-KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI--- 186 (503)
Q Consensus 112 ~~~~l~V~nLp-~~~te~~L~~~F~~~G~V~~v~i~~~-kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~--- 186 (503)
++++|||+||| ..+|+++|+++|+.||.|.+|+|+++ +|||||+|.+.++|.+||+.||+..|.|++|.|.++..
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~ 82 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAI 82 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCcc
Confidence 46799999999 79999999999999999999999875 79999999999999999999999999999999998731
Q ss_pred ----------------------------------------ccceeccCcccccCHHHHHHHhccCCCe--eeeEEEeCCC
Q psy93 187 ----------------------------------------NAAIKVKNLTSCVTNELLELAFGVFGDI--ERAIVIVDER 224 (503)
Q Consensus 187 ----------------------------------------~~~L~V~nLp~~~tee~L~~~Fs~~G~V--~~~~v~~d~~ 224 (503)
..+|||.|||+.+++++|+++|+.||.| ..++++.+.
T Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~- 161 (205)
T 3tyt_A 83 MPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK- 161 (205)
T ss_dssp CCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-
T ss_pred CCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-
Confidence 2359999999999999999999999999 888888775
Q ss_pred CCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeec
Q psy93 225 GNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEP 266 (503)
Q Consensus 225 g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~ 266 (503)
+.++++|||+|.+.++|.+||..||+..+-......|++|++
T Consensus 162 ~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~ 203 (205)
T 3tyt_A 162 SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKL 203 (205)
T ss_dssp SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEE
T ss_pred CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEe
Confidence 455799999999999999999999844443334456787765
No 7
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.96 E-value=2.1e-28 Score=224.27 Aligned_cols=151 Identities=25% Similarity=0.397 Sum_probs=141.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccC----C-------CeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEE
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPY----G-------ETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLK 180 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~ 180 (503)
++++|||+|||+++|+++|+++|+.| | .|.++.+.++++||||+|.+.++|.+|+ .||+..|.|++|.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~ 81 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCceee
Confidence 46899999999999999999999999 7 8999999999999999999999999999 8999999999999
Q ss_pred EEeccc------ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCee
Q psy93 181 IRFAPI------NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCF 253 (503)
Q Consensus 181 V~~a~~------~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~ 253 (503)
|.++.+ .++|||+|||..+++++|+++|+.||.|..+.++.+ .++.+++||||+|.+.++|.+|+..|| +..
T Consensus 82 v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~-g~~ 160 (172)
T 2g4b_A 82 IRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLN-GMQ 160 (172)
T ss_dssp EECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHT-TCE
T ss_pred ecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CCE
Confidence 999865 478999999999999999999999999999999999 489999999999999999999999997 666
Q ss_pred eecCCCCeEEeecC
Q psy93 254 FLTQSLRPVIVEPL 267 (503)
Q Consensus 254 ~~~~~~rpl~V~~~ 267 (503)
+ .+++|.|.++
T Consensus 161 ~---~g~~l~V~~A 171 (172)
T 2g4b_A 161 L---GDKKLLVQRA 171 (172)
T ss_dssp E---TTEECEEEEC
T ss_pred E---CCeEEEEEeC
Confidence 6 6899999876
No 8
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.6e-28 Score=220.75 Aligned_cols=151 Identities=26% Similarity=0.351 Sum_probs=140.1
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC-----CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc--
Q psy93 114 CRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI-- 186 (503)
Q Consensus 114 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~-----kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~-- 186 (503)
++|||+|||+++|+++|+++|+.||+|.+|.|..+ ++||||+|.+.++|.+|+..|++..+.|++|.|.++.+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 47999999999999999999999999999999644 58999999999999999999999999999999999853
Q ss_pred ------ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCC
Q psy93 187 ------NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSL 259 (503)
Q Consensus 187 ------~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~ 259 (503)
..+|||.|||..+++++|.++|+.||.|..+.++.+ .++.+++||||+|.+.++|.+|+..|| +..+ .+
T Consensus 81 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-g~~~---~g 156 (166)
T 3md3_A 81 QSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQ-GQDL---NG 156 (166)
T ss_dssp CCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHT-TCEE---TT
T ss_pred CCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC-CCcc---CC
Confidence 568999999999999999999999999999999988 688999999999999999999999997 6655 68
Q ss_pred CeEEeecCC
Q psy93 260 RPVIVEPLE 268 (503)
Q Consensus 260 rpl~V~~~~ 268 (503)
++|.|.++.
T Consensus 157 ~~i~v~~a~ 165 (166)
T 3md3_A 157 RPLRINWAA 165 (166)
T ss_dssp EECEEEESC
T ss_pred cEEEEEecC
Confidence 999999875
No 9
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.96 E-value=4.8e-28 Score=220.15 Aligned_cols=153 Identities=24% Similarity=0.416 Sum_probs=137.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCC------CceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEK------MFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI 186 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k------g~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~ 186 (503)
+++|||+|||+++|+++|+++|+.||+|.+|.+++++ +||||+|.+.++|.+|+..|++..+.|++|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5789999999999999999999999999999997654 8999999999999999999999999999999999864
Q ss_pred ------ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCC
Q psy93 187 ------NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSL 259 (503)
Q Consensus 187 ------~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~-~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~ 259 (503)
..+|||.|||..+++++|+++|+.||.|..+.++.+. ++.+++||||+|.+.++|.+|+..|| +..+ ....
T Consensus 82 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~-g~~~-~g~~ 159 (167)
T 1fxl_A 82 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN-GQKP-SGAT 159 (167)
T ss_dssp CCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-TCCC-TTCS
T ss_pred CcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhc-CCcc-CCCc
Confidence 4679999999999999999999999999999999884 88899999999999999999999997 5544 1222
Q ss_pred CeEEeecC
Q psy93 260 RPVIVEPL 267 (503)
Q Consensus 260 rpl~V~~~ 267 (503)
.+|.|.++
T Consensus 160 ~~i~v~~A 167 (167)
T 1fxl_A 160 EPITVKFA 167 (167)
T ss_dssp SCCEEEEC
T ss_pred cceEEEeC
Confidence 45777764
No 10
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.95 E-value=1.3e-27 Score=227.07 Aligned_cols=154 Identities=21% Similarity=0.333 Sum_probs=141.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec------CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINK------EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI 186 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~------~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~ 186 (503)
.++|||+|||+++|+++|+++|+.||+|.+|.|++ +++||||+|.+.++|.+|+..|++..|.|+.|.|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 46899999999999999999999999999999964 478999999999999999999999999999999988743
Q ss_pred -----------------ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHh
Q psy93 187 -----------------NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRC 248 (503)
Q Consensus 187 -----------------~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~l 248 (503)
.++|||.|||..+++++|+++|+.||.|..+.|+.+ .++.+++||||+|.+.++|.+|+..|
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l 187 (216)
T 2qfj_A 108 IGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 187 (216)
T ss_dssp CGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHc
Confidence 368999999999999999999999999999999998 58899999999999999999999999
Q ss_pred hCCeeeecCCCCeEEeecCCcc
Q psy93 249 AEGCFFLTQSLRPVIVEPLELT 270 (503)
Q Consensus 249 n~g~~~~~~~~rpl~V~~~~~~ 270 (503)
| +..+ .+++|.|.++...
T Consensus 188 ~-g~~~---~g~~i~V~~a~~~ 205 (216)
T 2qfj_A 188 N-LFDL---GGQYLRVGKAVTP 205 (216)
T ss_dssp T-TCBC---SSSBCEEEECSSC
T ss_pred c-CCEe---CCcEEEEEEecCC
Confidence 7 5555 6899999998665
No 11
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.95 E-value=1e-27 Score=224.33 Aligned_cols=156 Identities=17% Similarity=0.252 Sum_probs=138.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEec
Q psy93 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a 184 (503)
...++|||+|||+++|+++|+++|+.||+|.+|.|+.+ +|||||+|.+.++|.+||.. ++..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 35679999999999999999999999999999999753 57999999999999999975 899999999999998
Q ss_pred cc------------ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCC
Q psy93 185 PI------------NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEG 251 (503)
Q Consensus 185 ~~------------~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g 251 (503)
.+ .++|||.|||..+++++|+++|+.||.|..|.|+.+ .++.+++||||+|.+.++|.+|+.. + +
T Consensus 90 ~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~-~ 167 (196)
T 1l3k_A 90 VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-K-Y 167 (196)
T ss_dssp CC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-S-C
T ss_pred cCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-C-C
Confidence 53 378999999999999999999999999999999998 4889999999999999999999986 4 6
Q ss_pred eeeecCCCCeEEeecCCcccc
Q psy93 252 CFFLTQSLRPVIVEPLELTDE 272 (503)
Q Consensus 252 ~~~~~~~~rpl~V~~~~~~~~ 272 (503)
..+ .+++|.|.++.+..+
T Consensus 168 ~~~---~G~~i~v~~a~~k~~ 185 (196)
T 1l3k_A 168 HTV---NGHNCEVRKALSKQE 185 (196)
T ss_dssp CEE---TTEECEEEECC----
T ss_pred cEE---CCEEEEEEecCChhH
Confidence 655 689999999877654
No 12
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=1.5e-27 Score=223.70 Aligned_cols=154 Identities=24% Similarity=0.385 Sum_probs=142.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccC----C-------CeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEE
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPY----G-------ETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLK 180 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~ 180 (503)
.+++|||+|||+++|+++|+++|+.| | .|.++.+.++++||||+|.+.++|.+|+ .||+..|.|++|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEE
Confidence 35799999999999999999999999 6 8899999999999999999999999999 8999999999999
Q ss_pred EEeccc--------------------------ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCC-CCCceeEEEE
Q psy93 181 IRFAPI--------------------------NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIV 233 (503)
Q Consensus 181 V~~a~~--------------------------~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~-~g~skg~gfV 233 (503)
|.++.+ .++|||.|||..+++++|+++|+.||.|..+.++.+. ++.+++||||
T Consensus 82 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV 161 (198)
T 2yh0_A 82 IRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFC 161 (198)
T ss_dssp EECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEE
T ss_pred EeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEE
Confidence 998742 3789999999999999999999999999999999984 8899999999
Q ss_pred EeCCHHHHHHHHHHhhCCeeeecCCCCeEEeecCCcc
Q psy93 234 EFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELT 270 (503)
Q Consensus 234 ~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~~~~~ 270 (503)
+|.+.++|.+|+..|| +..+ .+++|.|.++.+.
T Consensus 162 ~f~~~~~a~~A~~~l~-g~~~---~g~~l~v~~a~~~ 194 (198)
T 2yh0_A 162 EYVDINVTDQAIAGLN-GMQL---GDKKLLVQRASVG 194 (198)
T ss_dssp EESSSSHHHHHHHHHT-TCEE---TTEECEEEESCCC
T ss_pred EECCHHHHHHHHHHcC-CCEE---CCEEEEEEECCCC
Confidence 9999999999999997 6666 6899999998665
No 13
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.95 E-value=2.2e-27 Score=216.45 Aligned_cols=152 Identities=24% Similarity=0.411 Sum_probs=137.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
++++|||+|||+++|+++|+++|+.||+|.+|.|+++ +|||||+|.+.++|.+|+.. +..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 3579999999999999999999999999999999754 68999999999999999984 578999999999986
Q ss_pred c------ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCC
Q psy93 186 I------NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQS 258 (503)
Q Consensus 186 ~------~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~ 258 (503)
+ ..+|||.|||..+++++|+++|+.||.|..+.++.+ .++.++|||||+|.+.++|.+|+. ++ +..+ .
T Consensus 80 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~-~~~~---~ 154 (167)
T 2cjk_A 80 PRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NK-FIDF---K 154 (167)
T ss_dssp CHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CS-EECS---S
T ss_pred chhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CC-CEEe---C
Confidence 4 568999999999999999999999999999999988 578999999999999999999998 64 6655 6
Q ss_pred CCeEEeecCCcc
Q psy93 259 LRPVIVEPLELT 270 (503)
Q Consensus 259 ~rpl~V~~~~~~ 270 (503)
+++|.|.++.+.
T Consensus 155 g~~i~V~~a~pk 166 (167)
T 2cjk_A 155 DRKIEIKRAEPR 166 (167)
T ss_dssp SSCEEEEECCCC
T ss_pred CeEEEEeecCCC
Confidence 899999998764
No 14
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.94 E-value=1.6e-27 Score=237.79 Aligned_cols=192 Identities=10% Similarity=0.062 Sum_probs=155.0
Q ss_pred CcCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec----CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEec
Q psy93 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINK----EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184 (503)
Q Consensus 109 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~----~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a 184 (503)
.....++|||+|||+++|+++|+++|+.||+|.+|.|++ +++||||+|.+.++|.+|+. |++..|.|++|.|.++
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~ 115 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHL 115 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEEC
Confidence 344678999999999999999999999999999999986 47999999999999999995 9999999999999987
Q ss_pred ccccceeccCcccccCHHHHHHHhccCC-CeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEE
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFG-DIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVI 263 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G-~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~ 263 (503)
..++|||+|||..+++++|.++|+.|| .|..|.++.+..+.+++||||+|.+.++|.+|+..|+ +..+ .+++|.
T Consensus 116 -~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~---~g~~l~ 190 (292)
T 2ghp_A 116 -TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLN-GLKI---EGYTLV 190 (292)
T ss_dssp -CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHT-TCEE---TTEECE
T ss_pred -CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhC-CCEe---CCcEEE
Confidence 467899999999999999999999999 9999999998778899999999999999999999997 6666 689999
Q ss_pred eecCCccccccC------CcccccCCCCchh-hhhhccCcccCCCCCcch
Q psy93 264 VEPLELTDEIDG------LSERTINKKTPEF-YKQRQVGPRFATVNSFEF 306 (503)
Q Consensus 264 V~~~~~~~~~~~------~~~k~i~k~~~~~-~kere~~~rf~~~g~~e~ 306 (503)
|.++.+...... ....++..+++.. .++..+...|..+|.+..
T Consensus 191 v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~ 240 (292)
T 2ghp_A 191 TKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEK 240 (292)
T ss_dssp EEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEE
T ss_pred EEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeE
Confidence 998876543321 1234555566666 677777788888777643
No 15
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.94 E-value=2.2e-26 Score=211.73 Aligned_cols=151 Identities=19% Similarity=0.252 Sum_probs=134.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCe-----EEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 111 ANNCRLYLGNIGGDITENDIIELFKPYGET-----QELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V-----~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
...++|||+|||+++|+++|+++|+.||.| ......++++||||+|.+.++|.+|+ .||+..|.|++|.|.++.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~ 89 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPK 89 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecCC
Confidence 357899999999999999999999999854 34444567999999999999999999 599999999999999986
Q ss_pred c--------ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecC
Q psy93 186 I--------NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQ 257 (503)
Q Consensus 186 ~--------~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~ 257 (503)
+ .++|||.|||..+++++|+++|+.||.|..+ ..++.+++||||+|.+.++|.+|+..|| +..+
T Consensus 90 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~-g~~~--- 161 (175)
T 1fje_B 90 GRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQ-GAEI--- 161 (175)
T ss_dssp CSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHT-EEEE---
T ss_pred CccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhC-CCEE---
Confidence 3 5789999999999999999999999988765 6678889999999999999999999997 6666
Q ss_pred CCCeEEeecCCcc
Q psy93 258 SLRPVIVEPLELT 270 (503)
Q Consensus 258 ~~rpl~V~~~~~~ 270 (503)
.+++|.|.++.++
T Consensus 162 ~g~~i~v~~a~~k 174 (175)
T 1fje_B 162 DGRSVSLYYTGEK 174 (175)
T ss_dssp TTEEEEEEECSSC
T ss_pred CCeEEEEEecCCC
Confidence 6899999998653
No 16
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.94 E-value=4.5e-26 Score=220.01 Aligned_cols=152 Identities=22% Similarity=0.299 Sum_probs=137.0
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHhhccCCCeEEEEEecC-CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc--
Q psy93 111 ANNCRLYLGNIGG-DITENDIIELFKPYGETQELFINKE-KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI-- 186 (503)
Q Consensus 111 ~~~~~l~V~nLp~-~~te~~L~~~F~~~G~V~~v~i~~~-kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~-- 186 (503)
.++++|||+|||+ ++++++|+++|+.||.|.+|.|+++ ++||||+|.+.++|.+|++.|++..|.|++|.|.++.+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~ 111 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 111 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCcc
Confidence 3568999999999 9999999999999999999999877 59999999999999999999999999999999998752
Q ss_pred ---------------------------------------ccceeccCcccccCHHHHHHHhccCC-CeeeeEEEeCCCCC
Q psy93 187 ---------------------------------------NAAIKVKNLTSCVTNELLELAFGVFG-DIERAIVIVDERGN 226 (503)
Q Consensus 187 ---------------------------------------~~~L~V~nLp~~~tee~L~~~Fs~~G-~V~~~~v~~d~~g~ 226 (503)
.++|||.|||..+++++|+++|+.|| .|..+.++.+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~---- 187 (229)
T 2adc_A 112 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK---- 187 (229)
T ss_dssp CCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS----
T ss_pred ccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC----
Confidence 36799999999999999999999999 9999998664
Q ss_pred ceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeecCCc
Q psy93 227 SKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLEL 269 (503)
Q Consensus 227 skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~~~~ 269 (503)
+++||||+|.+.++|.+|+..|| +..+ ..+++|.|.++.+
T Consensus 188 ~~g~afV~f~~~~~A~~Ai~~l~-g~~~--~~g~~l~v~~a~~ 227 (229)
T 2adc_A 188 DRKMALIQMGSVEEAVQALIDLH-NHDL--GENHHLRVSFSKS 227 (229)
T ss_dssp STTCEEEEESSHHHHHHHHHHHT-TCBS--SSSCBCEEEECSS
T ss_pred CCcEEEEEECCHHHHHHHHHHHC-CCcc--CCCCeEEEEEecC
Confidence 26899999999999999999997 5555 1388999998764
No 17
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.94 E-value=1.1e-25 Score=223.36 Aligned_cols=151 Identities=16% Similarity=0.311 Sum_probs=135.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHH----HhhccCCCeEEEEEec---CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEe
Q psy93 111 ANNCRLYLGNIGGDITENDII----ELFKPYGETQELFINK---EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRF 183 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~----~~F~~~G~V~~v~i~~---~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~ 183 (503)
.++++|||+|||+++|+++|+ ++|+.||.|.+|.|.+ ++|||||+|.+.++|.+||+.||+..|.|+.|+|.|
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 86 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 86 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEE
Confidence 357899999999999999966 8999999999999875 579999999999999999999999999999999998
Q ss_pred ccc-----------------------------------------------------------------------------
Q psy93 184 API----------------------------------------------------------------------------- 186 (503)
Q Consensus 184 a~~----------------------------------------------------------------------------- 186 (503)
+..
T Consensus 87 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 166 (282)
T 3pgw_A 87 AKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPP 166 (282)
T ss_pred eccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCCC
Confidence 742
Q ss_pred ----------------------------------------ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCC
Q psy93 187 ----------------------------------------NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGN 226 (503)
Q Consensus 187 ----------------------------------------~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~ 226 (503)
.++|||.|||..+++++|+++|+.||.|.+|.|+.+.
T Consensus 167 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~--- 243 (282)
T 3pgw_A 167 PGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR--- 243 (282)
T ss_pred CCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC---
Confidence 2459999999999999999999999999999998763
Q ss_pred ceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeecCC
Q psy93 227 SKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLE 268 (503)
Q Consensus 227 skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~~~ 268 (503)
++||||+|.+.++|.+|+..|| +..+. .+++|.|.|++
T Consensus 244 -~g~afV~f~~~~~A~~A~~~l~-g~~~~--~g~~l~v~~ak 281 (282)
T 3pgw_A 244 -HDIAFVEFDNEVQAGAARDALQ-GFKIT--QNNAMKISFAK 281 (282)
T ss_pred -CcEEEEEeCCHHHHHHHHHHcC-CcEeC--CCCEEEEEEec
Confidence 5799999999999999999997 55552 38999999875
No 18
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.93 E-value=1.2e-25 Score=223.21 Aligned_cols=156 Identities=20% Similarity=0.265 Sum_probs=144.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
..++|||+|||+++|+++|+++|+.||.|..|.++.+ +|||||+|.+.++|.+|+..|++..|.|++|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 4578999999999999999999999999999998643 5799999999999999999999999999999999996
Q ss_pred c---------ccceeccCccccc-CHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeee
Q psy93 186 I---------NAAIKVKNLTSCV-TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFL 255 (503)
Q Consensus 186 ~---------~~~L~V~nLp~~~-tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~ 255 (503)
+ .++|||.|||..+ ++++|+++|+.||.|..+.|+.+.++.++++|||+|.+.++|.+|+..|| +..+
T Consensus 174 ~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~-g~~~- 251 (284)
T 3smz_A 174 AGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQAD-GLSL- 251 (284)
T ss_dssp GGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHT-TCEE-
T ss_pred CCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhC-CCcc-
Confidence 4 4689999999995 99999999999999999999999999999999999999999999999997 6666
Q ss_pred cCCCCeEEeecCCccc
Q psy93 256 TQSLRPVIVEPLELTD 271 (503)
Q Consensus 256 ~~~~rpl~V~~~~~~~ 271 (503)
.+++|.|.++.+..
T Consensus 252 --~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 252 --GGSHLRVSFCAPGP 265 (284)
T ss_dssp --TTEECEEEECCSSS
T ss_pred --CCeEEEEEEecCCC
Confidence 68999999987654
No 19
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.93 E-value=4.1e-26 Score=214.54 Aligned_cols=150 Identities=21% Similarity=0.302 Sum_probs=135.3
Q ss_pred CcEEEEcCCCC-CCCHHHHHHhhccCCCeEEEEEecC-CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc----
Q psy93 113 NCRLYLGNIGG-DITENDIIELFKPYGETQELFINKE-KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI---- 186 (503)
Q Consensus 113 ~~~l~V~nLp~-~~te~~L~~~F~~~G~V~~v~i~~~-kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~---- 186 (503)
+++|||+|||+ ++++++|+++|+.||.|.+|.|+.+ ++||||+|.+.++|.+|+..||+..|.|++|.|.++.+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 82 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQ 82 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcC
Confidence 57999999999 9999999999999999999999876 59999999999999999999999999999999998742
Q ss_pred -------------------------------------ccceeccCcccccCHHHHHHHhccCC-CeeeeEEEeCCCCCce
Q psy93 187 -------------------------------------NAAIKVKNLTSCVTNELLELAFGVFG-DIERAIVIVDERGNSK 228 (503)
Q Consensus 187 -------------------------------------~~~L~V~nLp~~~tee~L~~~Fs~~G-~V~~~~v~~d~~g~sk 228 (503)
+++|||.|||..+++++|+++|+.|| .|..+.++.+. +
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~----~ 158 (198)
T 1qm9_A 83 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD----R 158 (198)
T ss_dssp CSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT----S
T ss_pred CCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC----C
Confidence 46799999999999999999999999 99999987642 7
Q ss_pred eEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeecCCc
Q psy93 229 CEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLEL 269 (503)
Q Consensus 229 g~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~~~~ 269 (503)
++|||+|.+.++|.+|+..|| +..+ ..+++|.|.++.+
T Consensus 159 g~afV~f~~~~~A~~A~~~l~-g~~~--~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 159 KMALIQMGSVEEAVQALIDLH-NHDL--GENHHLRVSFSKS 196 (198)
T ss_dssp SCEEEECSSHHHHHHHHHHHT-SSCC--SSCCSCCEEEECC
T ss_pred cEEEEEeCCHHHHHHHHHHhc-CCcc--CCCCeEEEEeecc
Confidence 899999999999999999997 5554 1378888888654
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.93 E-value=1.8e-25 Score=222.92 Aligned_cols=156 Identities=21% Similarity=0.381 Sum_probs=141.7
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHhhccCC-CeEEEEEec-----CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEe
Q psy93 110 FANNCRLYLGNIGGDITENDIIELFKPYG-ETQELFINK-----EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRF 183 (503)
Q Consensus 110 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G-~V~~v~i~~-----~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~ 183 (503)
....++|||+|||+++++++|+++|+.|| .|..|.|+. +++||||+|.+.++|.+|+..|++..|.|++|.|.+
T Consensus 114 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 193 (292)
T 2ghp_A 114 HLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKV 193 (292)
T ss_dssp ECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred ECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34578999999999999999999999999 999999864 579999999999999999999999999999999999
Q ss_pred ccc-------------ccceeccCcccc-cCHHHHHHHhccCCCeeeeEEEeCCC--CCceeEEEEEeCCHHHHHHHHHH
Q psy93 184 API-------------NAAIKVKNLTSC-VTNELLELAFGVFGDIERAIVIVDER--GNSKCEGIVEFARKPAAAQALRR 247 (503)
Q Consensus 184 a~~-------------~~~L~V~nLp~~-~tee~L~~~Fs~~G~V~~~~v~~d~~--g~skg~gfV~F~s~e~A~kAl~~ 247 (503)
+.+ .++|||.|||.. +++++|+++|+.||.|..|.|+.+.. +.+++||||+|.+.++|.+|+ .
T Consensus 194 a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~ 272 (292)
T 2ghp_A 194 SNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-Q 272 (292)
T ss_dssp CCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-G
T ss_pred CCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-H
Confidence 853 368999999999 99999999999999999999999876 899999999999999999999 9
Q ss_pred hhCCeeeecCCCCeEEeecCCcc
Q psy93 248 CAEGCFFLTQSLRPVIVEPLELT 270 (503)
Q Consensus 248 ln~g~~~~~~~~rpl~V~~~~~~ 270 (503)
|| +..+ .+++|.|.++.++
T Consensus 273 l~-g~~~---~g~~i~V~~a~~k 291 (292)
T 2ghp_A 273 MN-RSLL---GNREISVSLADKK 291 (292)
T ss_dssp GT-TEEE---TTEEEEEEECCCC
T ss_pred hc-CCEE---CCcEEEEEEecCC
Confidence 97 6666 6899999998764
No 21
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.80 E-value=6.5e-20 Score=157.95 Aligned_cols=92 Identities=17% Similarity=0.357 Sum_probs=69.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC----CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc-
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI- 186 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~----kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~- 186 (503)
.+++|||+|||+++|+++|+++|+.||.|.+|+|+.+ +|||||+|.+.++|.+||+.|++..|.|++|.|.++.+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 3568999999999999999999999999999999754 68999999999999999999999999999999999853
Q ss_pred -------------ccceeccCcccccCHHH
Q psy93 187 -------------NAAIKVKNLTSCVTNEL 203 (503)
Q Consensus 187 -------------~~~L~V~nLp~~~tee~ 203 (503)
.++|||+|||+++|++.
T Consensus 84 ~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC----------------------------
T ss_pred cccccccccccCCCCceEeCCCCCCccccc
Confidence 24799999999998864
No 22
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.74 E-value=4.6e-18 Score=142.45 Aligned_cols=82 Identities=18% Similarity=0.404 Sum_probs=72.7
Q ss_pred cccCcCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceE
Q psy93 106 KDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSL 179 (503)
Q Consensus 106 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l 179 (503)
.+..+...|+|||+|||+++|+++|+++|++||+|.+|.|+++ +|||||+|.+.++|.+||+.||+..|.|++|
T Consensus 12 ~en~~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l 91 (99)
T 4fxv_A 12 HENLYFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTI 91 (99)
T ss_dssp ----CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred cccccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3445566789999999999999999999999999999999753 5799999999999999999999999999999
Q ss_pred EEEecccc
Q psy93 180 KIRFAPIN 187 (503)
Q Consensus 180 ~V~~a~~~ 187 (503)
+|.||.|+
T Consensus 92 ~V~~AkPS 99 (99)
T 4fxv_A 92 KVSYARPS 99 (99)
T ss_dssp EEEECCBC
T ss_pred EEEEeeCC
Confidence 99999763
No 23
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.73 E-value=7.6e-18 Score=136.53 Aligned_cols=72 Identities=17% Similarity=0.194 Sum_probs=70.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEec
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a 184 (503)
++.|||+||++.+|+++|+++|.+||+|.++++..++|||||+|.+.++|.+||+.||+..|.|++|+|++|
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 568999999999999999999999999999999999999999999999999999999999999999999987
No 24
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.73 E-value=7.5e-18 Score=144.55 Aligned_cols=100 Identities=21% Similarity=0.346 Sum_probs=91.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec---CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccccc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINK---EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINA 188 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~---~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~~~ 188 (503)
.+++|||+|||+++|+++|+++|+.||.|.+|.|+. +++||||+|.+.++|.+|+..||+..|.|+.|.|.++.+..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 86 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANR 86 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCh
Confidence 357899999999999999999999999999999964 47899999999999999999999999999999999998754
Q ss_pred ceeccCcccccCHHHHHHHhccCCC
Q psy93 189 AIKVKNLTSCVTNELLELAFGVFGD 213 (503)
Q Consensus 189 ~L~V~nLp~~~tee~L~~~Fs~~G~ 213 (503)
.. .+++...++++|.++|++||.
T Consensus 87 ~~--~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 87 AF--QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HT--TTSCHHHHHHHHHHHHHHHCC
T ss_pred hh--hhhhHhHhHHHHHHHHHHhCC
Confidence 43 788889999999999999985
No 25
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.6e-17 Score=138.64 Aligned_cols=87 Identities=40% Similarity=0.725 Sum_probs=80.9
Q ss_pred cCcCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecccc
Q psy93 108 IKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPIN 187 (503)
Q Consensus 108 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~~ 187 (503)
....+.++|||+|||+++|+++|+++|+.||+|..|.|.++++||||+|.+.++|.+|+..||+..|.|++|.|.++.+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cceeccC
Q psy93 188 AAIKVKN 194 (503)
Q Consensus 188 ~~L~V~n 194 (503)
..+.+.+
T Consensus 90 ~~~~~g~ 96 (99)
T 2cpj_A 90 ASLTSGP 96 (99)
T ss_dssp SCCCCCC
T ss_pred CCCCCCC
Confidence 8777764
No 26
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.72 E-value=1.8e-17 Score=150.22 Aligned_cols=121 Identities=17% Similarity=0.112 Sum_probs=100.3
Q ss_pred cCCCceEEeeCCHHHHHHHHHHhCCccccCceEEE-------Eec------------ccccceeccCcccccCHHHHHHH
Q psy93 147 KEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKI-------RFA------------PINAAIKVKNLTSCVTNELLELA 207 (503)
Q Consensus 147 ~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V-------~~a------------~~~~~L~V~nLp~~~tee~L~~~ 207 (503)
+.+|||||+|.+.++|++|+..+++.......+.+ ... .+.++|||+|||..+++++|+++
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~ 90 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRV 90 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 35799999999999999999887754322222222 111 23679999999999999999999
Q ss_pred hccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeecCCccc
Q psy93 208 FGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTD 271 (503)
Q Consensus 208 Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~~~~~~ 271 (503)
|+.||.|..|.|+.| .++.++|||||+|.+.++|.+|+..|| +..+ .+++|.|.++.+..
T Consensus 91 F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-g~~~---~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 91 FEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMD-GAVL---DGRELRVQMARYGR 151 (158)
T ss_dssp HHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHST-TEES---SSSEEEEEEECCSS
T ss_pred HHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhC-CCEE---CCeEEEEEECCCCC
Confidence 999999999999998 588999999999999999999999997 6665 68999999987653
No 27
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2e-17 Score=139.24 Aligned_cols=79 Identities=14% Similarity=0.236 Sum_probs=73.1
Q ss_pred CCcEEEEcCCCC-CCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCc--cccCceEEEEeccccc
Q psy93 112 NNCRLYLGNIGG-DITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGH--VLKGRSLKIRFAPINA 188 (503)
Q Consensus 112 ~~~~l~V~nLp~-~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~--~l~g~~l~V~~a~~~~ 188 (503)
++++|||+|||+ ++|+++|+++|++||.|.+|.|+++++||||+|++.++|.+||+.|++. .|.|++|.|.++....
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~ 93 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYK 93 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCCT
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCCC
Confidence 567999999999 9999999999999999999999999999999999999999999999865 5999999999998655
Q ss_pred ce
Q psy93 189 AI 190 (503)
Q Consensus 189 ~L 190 (503)
.|
T Consensus 94 ~~ 95 (102)
T 1x4d_A 94 RI 95 (102)
T ss_dssp TS
T ss_pred CC
Confidence 44
No 28
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.2e-17 Score=139.37 Aligned_cols=76 Identities=25% Similarity=0.405 Sum_probs=71.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCC--ccccCceEEEEecccc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDG--HVLKGRSLKIRFAPIN 187 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g--~~l~g~~l~V~~a~~~ 187 (503)
+.++|||+|||+++|+++|+++|++||.|.+|.|+++||||||+|++.++|.+||+.|++ ..|.|++|+|.|+.+.
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 92 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCC
Confidence 467999999999999999999999999999999999999999999999999999998864 6899999999999764
No 29
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.70 E-value=4.7e-17 Score=136.10 Aligned_cols=77 Identities=10% Similarity=0.192 Sum_probs=72.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCcc--ccCceEEEEecccc
Q psy93 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHV--LKGRSLKIRFAPIN 187 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~--l~g~~l~V~~a~~~ 187 (503)
.++++|||+|||+++|+++|+++|++||.|.+|.|+++|+||||+|++.++|.+|++.|++.. |.|++|.|.++++.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecccc
Confidence 356789999999999999999999999999999999999999999999999999999999885 77999999998764
No 30
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=2.3e-17 Score=138.18 Aligned_cols=83 Identities=22% Similarity=0.463 Sum_probs=77.6
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC-CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc------
Q psy93 114 CRLYLGNIGGDITENDIIELFKPYGETQELFINKE-KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI------ 186 (503)
Q Consensus 114 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~-kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~------ 186 (503)
|+|||+|||+++|+++|+++|++||+|.+|.|+.+ ++||||+|.+.++|.+|+..||+..|.|+.|.|.++.+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 80 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSR 80 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCccc
Confidence 58999999999999999999999999999999886 99999999999999999999999999999999999953
Q ss_pred ----------ccceeccCcc
Q psy93 187 ----------NAAIKVKNLT 196 (503)
Q Consensus 187 ----------~~~L~V~nLp 196 (503)
..+|||++|+
T Consensus 81 ~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 81 FDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSCCCSCCCCSCCCSCCCC
T ss_pred CCCCCccccCCCceecCCCC
Confidence 4578888886
No 31
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.69 E-value=3.4e-17 Score=147.34 Aligned_cols=114 Identities=23% Similarity=0.152 Sum_probs=103.0
Q ss_pred CCCceEEeeCCHHHHHHHHHHh-CCccccCceEEEEeccc----------------------ccceeccCcccccCHHHH
Q psy93 148 EKMFGFIRMDYKHNADKAKAKL-DGHVLKGRSLKIRFAPI----------------------NAAIKVKNLTSCVTNELL 204 (503)
Q Consensus 148 ~kg~aFV~F~~~e~A~~Ai~~l-~g~~l~g~~l~V~~a~~----------------------~~~L~V~nLp~~~tee~L 204 (503)
-+|+++|+|.++++|++|+..| |+..+.| +|.|.++.. .++|||+|||+.+++++|
T Consensus 12 l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l 90 (150)
T 2i2y_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTEL 90 (150)
T ss_dssp SCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHHH
T ss_pred ccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHH
Confidence 3789999999999999999999 9999999 999988742 468999999999999999
Q ss_pred HHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeecCCcc
Q psy93 205 ELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELT 270 (503)
Q Consensus 205 ~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~~~~~ 270 (503)
+++|+.||.|.+|.|+.+ +++||||+|.+.++|.+|+..|| +..+ .+++|.|.++.+.
T Consensus 91 ~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~-g~~~---~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 91 ERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELD-GRTL---CGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHS-SSCS---SSSCCEEEECCCC
T ss_pred HHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcC-CCEE---CCeEEEEEEcCCC
Confidence 999999999999999876 58899999999999999999997 5555 6899999987654
No 32
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=7.5e-17 Score=137.87 Aligned_cols=83 Identities=17% Similarity=0.281 Sum_probs=75.2
Q ss_pred cCCCcEEEEcCCCCC-CCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCC--ccccCceEEEEeccc
Q psy93 110 FANNCRLYLGNIGGD-ITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDG--HVLKGRSLKIRFAPI 186 (503)
Q Consensus 110 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g--~~l~g~~l~V~~a~~ 186 (503)
..++++|||+|||++ +|+++|+++|++||.|.+|.|+++++||||+|++.++|.+||+.|++ ..|.|++|.|.++..
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 445789999999998 99999999999999999999999999999999999999999998864 569999999999987
Q ss_pred ccceec
Q psy93 187 NAAIKV 192 (503)
Q Consensus 187 ~~~L~V 192 (503)
...+..
T Consensus 102 ~~~~~~ 107 (112)
T 1x4f_A 102 YKKLVS 107 (112)
T ss_dssp CSSSSC
T ss_pred cccccc
Confidence 666544
No 33
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.67 E-value=1e-16 Score=130.99 Aligned_cols=83 Identities=16% Similarity=0.325 Sum_probs=78.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccccccee
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIK 191 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~~~~L~ 191 (503)
..++|||+|||+++++++|+++|++| .|.+|.|.++++||||+|.+.++|.+|+..||+..+.|++|+|.+++....++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 82 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDALLC 82 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCCCCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCceEe
Confidence 45789999999999999999999999 99999998899999999999999999999999999999999999999988888
Q ss_pred ccCc
Q psy93 192 VKNL 195 (503)
Q Consensus 192 V~nL 195 (503)
+.|.
T Consensus 83 ~~n~ 86 (88)
T 1wg1_A 83 SGPS 86 (88)
T ss_dssp CCCT
T ss_pred cCCC
Confidence 8764
No 34
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.3e-16 Score=132.66 Aligned_cols=76 Identities=18% Similarity=0.317 Sum_probs=70.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHh--CCccccCceEEEEecccc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL--DGHVLKGRSLKIRFAPIN 187 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l--~g~~l~g~~l~V~~a~~~ 187 (503)
++++|||+|||+++|+++|+++|++||.|.+|.|+++++||||+|.+.++|.+|++.| ++..|.|++|.|.|+.+.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 91 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHK 91 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcc
Confidence 4678999999999999999999999999999999999999999999999999999977 467899999999999753
No 35
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=4.5e-17 Score=139.28 Aligned_cols=75 Identities=17% Similarity=0.244 Sum_probs=72.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI 186 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~ 186 (503)
..++|||+|||+++|+++|+++|++||.|..|.|+++++||||+|.+.++|.+||..||+..|.|++|.|.|+..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 357899999999999999999999999999999999999999999999999999999999999999999999865
No 36
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2.2e-16 Score=131.22 Aligned_cols=76 Identities=25% Similarity=0.435 Sum_probs=72.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCcccc--CceEEEEecccc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLK--GRSLKIRFAPIN 187 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~--g~~l~V~~a~~~ 187 (503)
+.++|||+|||+++|+++|+++|++||.|..|.+.++++||||+|.+.++|.+|+..||+..|. +++|+|.|+.+.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSG 93 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCC
Confidence 3568999999999999999999999999999999999999999999999999999999999999 999999999764
No 37
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.5e-16 Score=137.42 Aligned_cols=77 Identities=25% Similarity=0.400 Sum_probs=71.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCC--ccccCceEEEEecccc
Q psy93 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDG--HVLKGRSLKIRFAPIN 187 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g--~~l~g~~l~V~~a~~~ 187 (503)
.++++|||+|||+++|+++|+++|++||.|.+|.|+++|+||||+|++.++|.+||+.|++ ..|.|++|.|.|+.+.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k 107 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 107 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCC
Confidence 3567899999999999999999999999999999999999999999999999999999874 6899999999999764
No 38
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.2e-16 Score=133.49 Aligned_cols=76 Identities=9% Similarity=0.166 Sum_probs=70.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCc--cccCceEEEEecccc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGH--VLKGRSLKIRFAPIN 187 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~--~l~g~~l~V~~a~~~ 187 (503)
++++|||+|||+++++++|+++|++||.|..|.|+++|+||||+|.+.++|.+|++.|++. .|.|++|.|.|+.+.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~ 91 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSK 91 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCc
Confidence 4678999999999999999999999999999999999999999999999999999988764 589999999999764
No 39
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.3e-16 Score=131.01 Aligned_cols=78 Identities=14% Similarity=0.227 Sum_probs=72.8
Q ss_pred cCCCcEEEEcCCCCCCCHHHHH----HhhccCCCeEEEEEecC---CCceEEeeCCHHHHHHHHHHhCCccccCceEEEE
Q psy93 110 FANNCRLYLGNIGGDITENDII----ELFKPYGETQELFINKE---KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIR 182 (503)
Q Consensus 110 ~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~V~~v~i~~~---kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~ 182 (503)
+++.++|||+|||+++++++|+ ++|++||+|.+|.|+.+ ++||||+|.+.++|.+||..||+..|.|++|+|.
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456899999999999999999 99999999999999865 8999999999999999999999999999999999
Q ss_pred ecccc
Q psy93 183 FAPIN 187 (503)
Q Consensus 183 ~a~~~ 187 (503)
++.+.
T Consensus 86 ~a~~~ 90 (96)
T 2dgx_A 86 LATGA 90 (96)
T ss_dssp ECCCS
T ss_pred EcCCC
Confidence 99764
No 40
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.1e-16 Score=127.84 Aligned_cols=74 Identities=26% Similarity=0.532 Sum_probs=70.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHh-CCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL-DGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l-~g~~l~g~~l~V~~a~ 185 (503)
..++|||+|||+++++++|+++|++||.|..|.++++++||||+|.+.++|.+|+..| ++..+.|++|+|.|++
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 4578999999999999999999999999999999999999999999999999999998 9999999999999873
No 41
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=5e-16 Score=131.83 Aligned_cols=74 Identities=12% Similarity=0.176 Sum_probs=70.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccC-----ceEEEEecccc
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKG-----RSLKIRFAPIN 187 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g-----~~l~V~~a~~~ 187 (503)
.++|||+|||+++|+++|+++|+.||+|..|.|+.+ +||||+|.+.++|.+||+.||+..|.| ++|.|.++.+.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~ 93 (108)
T 1x4c_A 15 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPR 93 (108)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCC
Confidence 578999999999999999999999999999999887 999999999999999999999999999 99999999764
No 42
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.65 E-value=3.5e-16 Score=125.79 Aligned_cols=75 Identities=20% Similarity=0.449 Sum_probs=70.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI 186 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~ 186 (503)
+++|||+|||+++++++|+++|+.||+|.+|.++.+ ++||||+|.+.++|.+|+..||+..|.|++|.|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 368999999999999999999999999999999755 68999999999999999999999999999999999876
Q ss_pred c
Q psy93 187 N 187 (503)
Q Consensus 187 ~ 187 (503)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 43
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.9e-16 Score=132.51 Aligned_cols=75 Identities=28% Similarity=0.379 Sum_probs=71.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI 186 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~ 186 (503)
..++|||+|||.++++++|+++|+.||.|.+|.|.++++||||+|.+.++|.+|+..||+..|.|+.|+|.|+.+
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 467999999999999999999999999999999999999999999999999999999999999999999999864
No 44
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.65 E-value=2.9e-16 Score=130.18 Aligned_cols=80 Identities=28% Similarity=0.347 Sum_probs=73.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI 186 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~ 186 (503)
+++|||+|||.++++++|+++|+.||.|.+|.|+.+ ++||||+|.+.++|.+|+..||+..|.|+.|.|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 578999999999999999999999999999999754 78999999999999999999999999999999999987
Q ss_pred ccceec
Q psy93 187 NAAIKV 192 (503)
Q Consensus 187 ~~~L~V 192 (503)
......
T Consensus 82 ~~~~~~ 87 (96)
T 2x1f_A 82 SDISGV 87 (96)
T ss_dssp SSGGGH
T ss_pred CCCCCc
Confidence 655443
No 45
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=7.8e-16 Score=129.24 Aligned_cols=76 Identities=29% Similarity=0.504 Sum_probs=71.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC----CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecccc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPIN 187 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~----kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~~ 187 (503)
..++|||+|||+++|+++|+++|+.||.|..|.|+.+ ++||||+|.+.++|.+||..||+..|.|++|.|.++.+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 93 (103)
T 2cq3_A 14 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 93 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccC
Confidence 4679999999999999999999999999999999865 789999999999999999999999999999999999764
No 46
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.64 E-value=5e-16 Score=143.92 Aligned_cols=80 Identities=20% Similarity=0.348 Sum_probs=73.3
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec-----CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEec
Q psy93 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINK-----EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184 (503)
Q Consensus 110 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~-----~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a 184 (503)
....++|||+|||+++++++|+++|+.||+|..|.|+. +++||||+|.+.++|.+||..||+..|.|++|+|.|+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34578999999999999999999999999999999965 4799999999999999999999999999999999999
Q ss_pred ccccc
Q psy93 185 PINAA 189 (503)
Q Consensus 185 ~~~~~ 189 (503)
.....
T Consensus 165 ~~~~~ 169 (177)
T 2f3j_A 165 ASQID 169 (177)
T ss_dssp SSGGG
T ss_pred cCCCC
Confidence 76543
No 47
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.64 E-value=3.9e-16 Score=133.27 Aligned_cols=76 Identities=12% Similarity=0.164 Sum_probs=70.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec------CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINK------EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~------~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
+.++|||+|||+++|+++|+++|++||.|.+|.|+. ++|||||+|.+.++|.+||+.||+..|.|+.|.|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 356899999999999999999999999999999964 36899999999999999999999999999999999986
Q ss_pred cc
Q psy93 186 IN 187 (503)
Q Consensus 186 ~~ 187 (503)
..
T Consensus 85 ~~ 86 (110)
T 3s8s_A 85 KG 86 (110)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 48
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=6.8e-16 Score=126.38 Aligned_cols=74 Identities=28% Similarity=0.489 Sum_probs=70.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecccc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPIN 187 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~~ 187 (503)
+.++|||+|||.++|+++|+++|+.||+|..|.|. ++||||+|.+.++|.+|+..||+..|.|++|+|.++.+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 80 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNK 80 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCC
Confidence 56899999999999999999999999999999998 799999999999999999999999999999999998754
No 49
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.64 E-value=7.2e-16 Score=129.83 Aligned_cols=77 Identities=25% Similarity=0.477 Sum_probs=71.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC-----CCceEEeeCCHHHHHHHHHHhCCccccC---ceEEEE
Q psy93 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLDGHVLKG---RSLKIR 182 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~-----kg~aFV~F~~~e~A~~Ai~~l~g~~l~g---~~l~V~ 182 (503)
...++|||+|||+++++++|+++|+.||.|..|.|+.+ ++||||+|.+.++|.+||..||+..+.+ ++|.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 35789999999999999999999999999999999865 7899999999999999999999999998 999999
Q ss_pred ecccc
Q psy93 183 FAPIN 187 (503)
Q Consensus 183 ~a~~~ 187 (503)
++.+.
T Consensus 93 ~a~~~ 97 (105)
T 2dnh_A 93 FADTD 97 (105)
T ss_dssp ESCSS
T ss_pred ECccC
Confidence 99753
No 50
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.3e-16 Score=132.33 Aligned_cols=77 Identities=25% Similarity=0.537 Sum_probs=73.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccccc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINA 188 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~~~ 188 (503)
..++|||+|||.++|+++|+++|+.||.|..|.|+.+++||||+|.+.++|.+||..|++..|.|++|+|.|+.+..
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999997654
No 51
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.7e-16 Score=133.03 Aligned_cols=81 Identities=27% Similarity=0.457 Sum_probs=73.9
Q ss_pred ccCcCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC----CCceEEeeCCHHHHHHHHHHhCCccccCceEEEE
Q psy93 107 DIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIR 182 (503)
Q Consensus 107 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~----kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~ 182 (503)
.......++|||+|||.++|+++|+++|+.||.|..|.|..+ ++||||+|.+.++|.+|+..||+..|.|++|.|.
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 334456789999999999999999999999999999999755 7999999999999999999999999999999999
Q ss_pred ecccc
Q psy93 183 FAPIN 187 (503)
Q Consensus 183 ~a~~~ 187 (503)
++.+.
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 98754
No 52
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=8.5e-16 Score=126.87 Aligned_cols=76 Identities=28% Similarity=0.567 Sum_probs=71.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
.+++|||+|||.++|+++|+++|+.||.|..|.|+.+ ++||||+|.+.++|.+||..||+..|.|++|+|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 4679999999999999999999999999999999754 6899999999999999999999999999999999997
Q ss_pred cc
Q psy93 186 IN 187 (503)
Q Consensus 186 ~~ 187 (503)
+.
T Consensus 84 ~~ 85 (95)
T 2dnz_A 84 ER 85 (95)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 53
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.64 E-value=5e-16 Score=125.43 Aligned_cols=74 Identities=20% Similarity=0.501 Sum_probs=69.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec------CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINK------EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~------~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
+.++|||+|||+++++++|+++|++||+|..|.|+. +++||||+|.+.++|.+|+..||+..|.|++|+|.|++
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 467999999999999999999999999999999864 37899999999999999999999999999999999873
No 54
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.64 E-value=7.2e-16 Score=131.19 Aligned_cols=76 Identities=25% Similarity=0.475 Sum_probs=71.1
Q ss_pred CcCCCcEEEEcCCCCC-CCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc
Q psy93 109 KFANNCRLYLGNIGGD-ITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI 186 (503)
Q Consensus 109 ~~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~ 186 (503)
.....++|||+|||++ +|+++|+++|++||+|..|.| +++||||+|.+.++|.+||..||+..|.|++|+|.++.+
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 3445689999999999 999999999999999999999 689999999999999999999999999999999999864
No 55
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=9e-16 Score=128.85 Aligned_cols=76 Identities=25% Similarity=0.449 Sum_probs=71.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec----CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecccc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINK----EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPIN 187 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~----~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~~ 187 (503)
..++|||+|||+++++++|+++|+.||+|..|.|+. +++||||+|.+.++|.+||..||+..|.|++|.|.|+.+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTP 93 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCT
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCC
Confidence 467999999999999999999999999999999976 4789999999999999999999999999999999999764
No 56
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.63 E-value=4.5e-16 Score=126.27 Aligned_cols=75 Identities=25% Similarity=0.547 Sum_probs=69.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
+.++|||+|||.++++++|+++|+.||.|.+|.|+.+ ++||||+|.+.++|.+|+..||+..|.|+.|.|.|+.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 4678999999999999999999999999999999764 5899999999999999999999999999999999986
Q ss_pred c
Q psy93 186 I 186 (503)
Q Consensus 186 ~ 186 (503)
+
T Consensus 85 ~ 85 (87)
T 3bs9_A 85 R 85 (87)
T ss_dssp -
T ss_pred C
Confidence 5
No 57
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=6.6e-16 Score=129.67 Aligned_cols=76 Identities=22% Similarity=0.452 Sum_probs=71.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec----CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecccc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINK----EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPIN 187 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~----~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~~ 187 (503)
..++|||+|||+++|+++|+++|+.||.|..|.|+. +++||||+|.+.++|.+||..||+..|.|++|.|.++.+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 93 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeccc
Confidence 467899999999999999999999999999999984 4789999999999999999999999999999999999764
No 58
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.63 E-value=1.1e-15 Score=131.02 Aligned_cols=76 Identities=20% Similarity=0.463 Sum_probs=70.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
..++|||+|||+++++++|+++|+.||.|..|.|+.+ ++||||+|.+.++|.+||+.||+..|.|++|+|.|+.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 103 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 103 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence 4578999999999999999999999999999999754 4799999999999999999999999999999999997
Q ss_pred cc
Q psy93 186 IN 187 (503)
Q Consensus 186 ~~ 187 (503)
+.
T Consensus 104 ~~ 105 (115)
T 2cpz_A 104 SK 105 (115)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 59
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.1e-15 Score=129.16 Aligned_cols=77 Identities=29% Similarity=0.458 Sum_probs=72.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC-------CCceEEeeCCHHHHHHHHHHh-CCccccCceEEEEe
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-------KMFGFIRMDYKHNADKAKAKL-DGHVLKGRSLKIRF 183 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~-------kg~aFV~F~~~e~A~~Ai~~l-~g~~l~g~~l~V~~ 183 (503)
..++|||+|||+++|+++|+++|+.||.|..|.|+.+ ++||||+|.+.++|.+||..| |+..|.|++|.|.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~ 93 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEW 93 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEe
Confidence 4678999999999999999999999999999999765 789999999999999999999 99999999999999
Q ss_pred ccccc
Q psy93 184 APINA 188 (503)
Q Consensus 184 a~~~~ 188 (503)
+.+..
T Consensus 94 a~~~~ 98 (107)
T 2cph_A 94 ADSEV 98 (107)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 97654
No 60
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=9.8e-16 Score=127.58 Aligned_cols=77 Identities=32% Similarity=0.540 Sum_probs=71.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
+.++|||+|||+++|+++|+++|+.||+|..|.|+.+ ++||||+|.+.++|.+||..||+..|.|++|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 86 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 86 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 5679999999999999999999999999999999754 5899999999999999999999999999999999997
Q ss_pred ccc
Q psy93 186 INA 188 (503)
Q Consensus 186 ~~~ 188 (503)
+..
T Consensus 87 ~~~ 89 (99)
T 1whw_A 87 IKK 89 (99)
T ss_dssp CCS
T ss_pred CCc
Confidence 653
No 61
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.2e-15 Score=125.73 Aligned_cols=74 Identities=27% Similarity=0.434 Sum_probs=68.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
+.++|||+|||+++++++|+++|+.||+|..|.|+.+ ++||||+|.+.++|.+|++.||+..|.|++|+|.|++
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence 3568999999999999999999999999999999653 6899999999999999999999999999999999874
No 62
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=5.6e-16 Score=128.81 Aligned_cols=76 Identities=26% Similarity=0.458 Sum_probs=70.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec---------CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEE
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINK---------EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIR 182 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~---------~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~ 182 (503)
+.++|||+|||+++|+++|+++|+.||+|..|.|.. +++||||+|.+.++|.+||..||+..|.|++|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 457899999999999999999999999999999873 35799999999999999999999999999999999
Q ss_pred ecccc
Q psy93 183 FAPIN 187 (503)
Q Consensus 183 ~a~~~ 187 (503)
++.+.
T Consensus 84 ~a~~~ 88 (98)
T 2cpf_A 84 ISERA 88 (98)
T ss_dssp CSSCS
T ss_pred EccCC
Confidence 99764
No 63
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.63 E-value=1.6e-16 Score=130.84 Aligned_cols=76 Identities=14% Similarity=0.258 Sum_probs=68.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCC-CeEEEEEec------CCCceEEeeCCHHHHHHHHHHhC-CccccCceEEEEec
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPYG-ETQELFINK------EKMFGFIRMDYKHNADKAKAKLD-GHVLKGRSLKIRFA 184 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~G-~V~~v~i~~------~kg~aFV~F~~~e~A~~Ai~~l~-g~~l~g~~l~V~~a 184 (503)
+++|||+|||+++|+++|+++|+.|| +|.+|.|++ ++|||||+|.+.++|.+||+.++ +..|.|++|.|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 899999864 47899999999999999998874 56899999999999
Q ss_pred cccc
Q psy93 185 PINA 188 (503)
Q Consensus 185 ~~~~ 188 (503)
.+..
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 7653
No 64
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.3e-16 Score=128.37 Aligned_cols=76 Identities=21% Similarity=0.428 Sum_probs=71.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEE-EEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEec
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQEL-FINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v-~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a 184 (503)
+.++|||+|||+++|+++|+++|+.||.|..| .|+.+ ++||||+|.+.++|.+||..||+..|.|++|.|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 56899999999999999999999999999999 88754 789999999999999999999999999999999999
Q ss_pred ccc
Q psy93 185 PIN 187 (503)
Q Consensus 185 ~~~ 187 (503)
.+.
T Consensus 84 ~~~ 86 (96)
T 1x5t_A 84 FKK 86 (96)
T ss_dssp CCC
T ss_pred ccc
Confidence 654
No 65
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.63 E-value=1.3e-15 Score=129.54 Aligned_cols=80 Identities=30% Similarity=0.510 Sum_probs=72.9
Q ss_pred cCcCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEE
Q psy93 108 IKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKI 181 (503)
Q Consensus 108 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V 181 (503)
......++|||+|||+++|+++|+++|+.||+|..|.|+.+ +|||||+|.+.++|.+|++.|++..|.|++|+|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999743 589999999999999999999999999999999
Q ss_pred Eecccc
Q psy93 182 RFAPIN 187 (503)
Q Consensus 182 ~~a~~~ 187 (503)
.++.+.
T Consensus 101 ~~a~~k 106 (108)
T 2jrs_A 101 GHVTER 106 (108)
T ss_dssp ECSCSS
T ss_pred EEcccC
Confidence 998754
No 66
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.62 E-value=1.2e-15 Score=127.17 Aligned_cols=78 Identities=24% Similarity=0.484 Sum_probs=71.1
Q ss_pred cCcCCCcEEEEcCCCC-CCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc
Q psy93 108 IKFANNCRLYLGNIGG-DITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI 186 (503)
Q Consensus 108 ~~~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~ 186 (503)
.....+++|||+|||. ++++++|+++|+.||.|..|.|. ++||||+|.+.++|.+|+..||+..+.|+.|+|.++.+
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 3344678999999998 99999999999999999999994 89999999999999999999999999999999999865
Q ss_pred c
Q psy93 187 N 187 (503)
Q Consensus 187 ~ 187 (503)
.
T Consensus 95 ~ 95 (97)
T 2xnq_A 95 N 95 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 67
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.5e-15 Score=126.84 Aligned_cols=76 Identities=18% Similarity=0.372 Sum_probs=70.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC-----CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI 186 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~-----kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~ 186 (503)
..++|||+|||+++|+++|+++|+.||+|..|.|+.+ ++||||+|.+.++|.+|+..||+..|.|++|.|.++.+
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 95 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNS 95 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 4678999999999999999999999999999999764 48999999999999999999999999999999999976
Q ss_pred c
Q psy93 187 N 187 (503)
Q Consensus 187 ~ 187 (503)
.
T Consensus 96 ~ 96 (100)
T 2do4_A 96 G 96 (100)
T ss_dssp C
T ss_pred C
Confidence 4
No 68
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.62 E-value=8.7e-16 Score=124.77 Aligned_cols=76 Identities=18% Similarity=0.446 Sum_probs=70.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec-------CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEec
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINK-------EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~-------~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a 184 (503)
..++|||+|||+++|+++|+++|+.||.|..|.|+. +++||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 357899999999999999999999999999999853 6889999999999999999999999999999999998
Q ss_pred ccc
Q psy93 185 PIN 187 (503)
Q Consensus 185 ~~~ 187 (503)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 69
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=8.9e-16 Score=128.88 Aligned_cols=76 Identities=25% Similarity=0.525 Sum_probs=70.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec------CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINK------EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~------~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
..++|||+|||.++|+++|+++|+.||.|..|.|+. +++||||+|.+.++|.+||..||+..|.|++|.|.++.
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVAR 91 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECS
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECC
Confidence 467999999999999999999999999999999964 36899999999999999999999999999999999997
Q ss_pred cc
Q psy93 186 IN 187 (503)
Q Consensus 186 ~~ 187 (503)
+.
T Consensus 92 ~~ 93 (103)
T 2dnm_A 92 YG 93 (103)
T ss_dssp SC
T ss_pred cC
Confidence 53
No 70
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=7.7e-16 Score=128.95 Aligned_cols=76 Identities=20% Similarity=0.467 Sum_probs=70.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec------CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINK------EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~------~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
+.++|||+|||+++|+++|+++|+.||+|..|.|+. +++||||+|.+.++|.+||+.||+..|.|++|.|.++.
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 90 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCC
Confidence 457899999999999999999999999999999964 37899999999999999999999999999999999997
Q ss_pred cc
Q psy93 186 IN 187 (503)
Q Consensus 186 ~~ 187 (503)
+.
T Consensus 91 ~~ 92 (102)
T 2cqb_A 91 PM 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 71
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=8.6e-16 Score=128.96 Aligned_cols=77 Identities=27% Similarity=0.534 Sum_probs=71.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEec
Q psy93 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a 184 (503)
...++|||+|||+++++++|+++|+.||+|..|.|+.+ ++||||+|.+.++|.+||..||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 34689999999999999999999999999999999754 579999999999999999999999999999999999
Q ss_pred ccc
Q psy93 185 PIN 187 (503)
Q Consensus 185 ~~~ 187 (503)
.+.
T Consensus 93 ~~~ 95 (103)
T 2cq0_A 93 KPS 95 (103)
T ss_dssp SCC
T ss_pred CCC
Confidence 764
No 72
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1e-15 Score=128.17 Aligned_cols=76 Identities=24% Similarity=0.546 Sum_probs=70.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec------CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINK------EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~------~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
+.++|||+|||+++|+++|+++|+.||+|..|.|+. +++||||+|.+.++|.+||+.||+..|.|++|+|.++.
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 90 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAG 90 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 457899999999999999999999999999999975 36899999999999999999999999999999999986
Q ss_pred cc
Q psy93 186 IN 187 (503)
Q Consensus 186 ~~ 187 (503)
+.
T Consensus 91 ~~ 92 (102)
T 1x5s_A 91 KS 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 73
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1e-15 Score=129.13 Aligned_cols=78 Identities=22% Similarity=0.436 Sum_probs=71.6
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEe
Q psy93 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRF 183 (503)
Q Consensus 110 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~ 183 (503)
...+++|||+|||.++++++|+++|+.||+|..|.|+.+ ++||||+|.+.++|.+|+..||+..|.|++|.|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 345689999999999999999999999999999999744 68999999999999999999999999999999999
Q ss_pred cccc
Q psy93 184 APIN 187 (503)
Q Consensus 184 a~~~ 187 (503)
+.+.
T Consensus 100 a~~~ 103 (106)
T 1p27_B 100 CFVR 103 (106)
T ss_dssp SEES
T ss_pred ecCC
Confidence 8653
No 74
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.7e-15 Score=127.57 Aligned_cols=77 Identities=22% Similarity=0.403 Sum_probs=71.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
..++|||+|||+++|+++|+++|+.||.|..|.|+.+ ++||||+|.+.++|.+||..||+..|.|++|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 93 (105)
T 1x5u_A 14 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKAS 93 (105)
T ss_dssp TTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 4679999999999999999999999999999999753 5899999999999999999999999999999999997
Q ss_pred ccc
Q psy93 186 INA 188 (503)
Q Consensus 186 ~~~ 188 (503)
+..
T Consensus 94 ~~~ 96 (105)
T 1x5u_A 94 AHN 96 (105)
T ss_dssp TTS
T ss_pred CCC
Confidence 643
No 75
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.62 E-value=8.1e-16 Score=126.23 Aligned_cols=76 Identities=21% Similarity=0.356 Sum_probs=71.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec----CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecccc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINK----EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPIN 187 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~----~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~~ 187 (503)
..++|||+|||.++++++|+++|+.||+|..|.|.+ +++||||+|.+.++|.+|+..||+..|.|+.|+|.++.+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 86 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNA 86 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 467999999999999999999999999999999975 4689999999999999999999999999999999998764
No 76
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.62 E-value=6.2e-16 Score=132.18 Aligned_cols=75 Identities=15% Similarity=0.149 Sum_probs=70.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCC-CeEEEEEe--cCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYG-ETQELFIN--KEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI 186 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G-~V~~v~i~--~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~ 186 (503)
..++|||+|||+++|+++|+++|+.|| .|..|.|. .++|||||+|.+.++|++||+.||+..|.|++|+|.++..
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 457999999999999999999999999 89999985 4689999999999999999999999999999999999864
No 77
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.62 E-value=1.2e-15 Score=130.74 Aligned_cols=78 Identities=27% Similarity=0.558 Sum_probs=72.2
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEe
Q psy93 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRF 183 (503)
Q Consensus 110 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~ 183 (503)
....++|||+|||.++|+++|+++|+.||.|..|.|+.+ ++||||+|.+.++|.+||..||+..|.|+.|.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345789999999999999999999999999999999765 57999999999999999999999999999999999
Q ss_pred cccc
Q psy93 184 APIN 187 (503)
Q Consensus 184 a~~~ 187 (503)
+.+.
T Consensus 92 a~~~ 95 (115)
T 2dgo_A 92 ATRK 95 (115)
T ss_dssp SSCC
T ss_pred ccCC
Confidence 9754
No 78
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2.2e-15 Score=125.56 Aligned_cols=75 Identities=23% Similarity=0.469 Sum_probs=70.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec------CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINK------EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~------~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
..++|||+|||.++++++|+++|+.||.|..|.|+. +++||||+|.+.++|.+||+ |++..|.|++|.|.++.
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~ 87 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAE 87 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECC
Confidence 467899999999999999999999999999999975 37899999999999999998 99999999999999997
Q ss_pred cc
Q psy93 186 IN 187 (503)
Q Consensus 186 ~~ 187 (503)
+.
T Consensus 88 ~~ 89 (99)
T 2dgs_A 88 PR 89 (99)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 79
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.7e-15 Score=124.56 Aligned_cols=75 Identities=24% Similarity=0.422 Sum_probs=70.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecccc
Q psy93 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPIN 187 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~~ 187 (503)
...++|||+|||+++|+++|+++|+.||.|..|.|. ++||||+|.+.++|.+|+..||+..|.|+.|+|.++.+.
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 82 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 82 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCC
Confidence 356899999999999999999999999999999997 559999999999999999999999999999999999764
No 80
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.61 E-value=1.3e-15 Score=132.70 Aligned_cols=76 Identities=22% Similarity=0.458 Sum_probs=71.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEec
Q psy93 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a 184 (503)
...++|||+|||+++|+++|+++|+.||.|..|.|+.+ ++||||+|.+.++|.+||..||+..|.|+.|.|.|+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 45689999999999999999999999999999999754 789999999999999999999999999999999998
Q ss_pred cc
Q psy93 185 PI 186 (503)
Q Consensus 185 ~~ 186 (503)
.+
T Consensus 100 ~~ 101 (126)
T 3ex7_B 100 FV 101 (126)
T ss_dssp EE
T ss_pred cC
Confidence 64
No 81
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.61 E-value=1.7e-15 Score=130.41 Aligned_cols=76 Identities=22% Similarity=0.481 Sum_probs=70.0
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEe
Q psy93 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRF 183 (503)
Q Consensus 110 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~ 183 (503)
....++|||+|||+++++++|+++|+.||.|..|.|+.+ ++||||+|.+.++|.+||+.||+..|.|++|+|.|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 345689999999999999999999999999999999743 78999999999999999999999999999999998
Q ss_pred cc
Q psy93 184 AP 185 (503)
Q Consensus 184 a~ 185 (503)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 73
No 82
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.61 E-value=1.4e-15 Score=129.35 Aligned_cols=78 Identities=23% Similarity=0.449 Sum_probs=71.8
Q ss_pred cCcCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecccc
Q psy93 108 IKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPIN 187 (503)
Q Consensus 108 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~~ 187 (503)
......++|||+|||.++|+++|+++|+.||.|..|.|. ++||||+|.+.++|.+|+..||+..|.|++|.|.++.+.
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 334567899999999999999999999999999999998 899999999999999999999999999999999998764
No 83
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3e-15 Score=127.04 Aligned_cols=76 Identities=29% Similarity=0.596 Sum_probs=71.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC---CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecccc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE---KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPIN 187 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~---kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~~ 187 (503)
..++|||+|||+++|+++|+++|+.||.|..|.|..+ ++||||+|.+.++|.+||+.||+..|.|+.|.|.|+.+.
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 99 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSG 99 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccC
Confidence 4679999999999999999999999999999999754 689999999999999999999999999999999999764
No 84
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.61 E-value=1.4e-15 Score=127.81 Aligned_cols=74 Identities=26% Similarity=0.428 Sum_probs=69.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecccc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPIN 187 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~~ 187 (503)
+.++|||+|||+++|+++|+++|+.||.|..|.|+ ++||||+|.+.++|.+||..||+..|.|++|.|.|+.+.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 45789999999999999999999999999999997 679999999999999999999999999999999999764
No 85
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3e-15 Score=124.35 Aligned_cols=75 Identities=24% Similarity=0.401 Sum_probs=70.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecccc
Q psy93 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPIN 187 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~~ 187 (503)
...++|||+|| ++|+++|+++|+.||+|..|.|.++++||||+|.+.++|.+||..||+..|.|++|.|.|+.+.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 35689999996 8999999999999999999999999999999999999999999999999999999999999764
No 86
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.61 E-value=6.9e-16 Score=128.20 Aligned_cols=75 Identities=19% Similarity=0.370 Sum_probs=67.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCC--eEEEEEec------CCCceEEeeCCHHHHHHHHHHhCCc----cccCceE
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGE--TQELFINK------EKMFGFIRMDYKHNADKAKAKLDGH----VLKGRSL 179 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~--V~~v~i~~------~kg~aFV~F~~~e~A~~Ai~~l~g~----~l~g~~l 179 (503)
.-.||||+|||+++|+++|+++|++||. |.+|+|++ ++|||||+|.+.++|.+||+.||+. .|+|++|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3568999999999999999999999995 66888864 4789999999999999999999997 4889999
Q ss_pred EEEeccc
Q psy93 180 KIRFAPI 186 (503)
Q Consensus 180 ~V~~a~~ 186 (503)
.|.||++
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999864
No 87
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.1e-15 Score=126.13 Aligned_cols=75 Identities=27% Similarity=0.439 Sum_probs=69.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
+.++|||+|||+++++++|+++|+.||+|..|.|+.+ ++||||+|.+.++|.+|+..||+..|.|++|.|.++.
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPS 93 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence 4578999999999999999999999999999999643 5799999999999999999999999999999999986
Q ss_pred c
Q psy93 186 I 186 (503)
Q Consensus 186 ~ 186 (503)
+
T Consensus 94 ~ 94 (95)
T 2cqc_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 88
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.61 E-value=9.7e-16 Score=126.52 Aligned_cols=75 Identities=27% Similarity=0.426 Sum_probs=70.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC-----CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI 186 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~-----kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~ 186 (503)
..++|||+|||+++++++|+++|+.||+|..|.|+.+ ++||||+|.+.++|.+|+..||+..|.|++|.|.++..
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPSS 94 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcCC
Confidence 4578999999999999999999999999999999764 68999999999999999999999999999999998853
No 89
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.3e-15 Score=124.50 Aligned_cols=78 Identities=21% Similarity=0.323 Sum_probs=71.5
Q ss_pred CcCCCcEEEEcCCCCCCCHHHHHHhhccC--CCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc
Q psy93 109 KFANNCRLYLGNIGGDITENDIIELFKPY--GETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI 186 (503)
Q Consensus 109 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~--G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~ 186 (503)
.....++|||+|||+++|+++|+++|+.| |.|..|.+. ++||||+|.+.++|.+||..||+..|.|++|.|.++.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 88 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCC
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 34467899999999999999999999999 999999875 78999999999999999999999999999999999976
Q ss_pred cc
Q psy93 187 NA 188 (503)
Q Consensus 187 ~~ 188 (503)
..
T Consensus 89 ~~ 90 (99)
T 2cpd_A 89 VD 90 (99)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 90
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.4e-15 Score=128.17 Aligned_cols=74 Identities=24% Similarity=0.254 Sum_probs=68.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec-----CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINK-----EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI 186 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~-----~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~ 186 (503)
..++|||+|||+++|+++|+++|+.||+|.+|.|+. ++|||||+|.+.++|.+||. +++..|.|++|.|.++..
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 457899999999999999999999999999999975 47999999999999999999 899999999999998753
No 91
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.7e-15 Score=124.00 Aligned_cols=75 Identities=24% Similarity=0.507 Sum_probs=70.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecccc
Q psy93 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPIN 187 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~~ 187 (503)
...++|||+|||+++|+++|+++|+.||.|..|.|+ ++||||+|.+.++|.+||..||+..|.|++|.|.++.+.
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 346789999999999999999999999999999997 559999999999999999999999999999999999764
No 92
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=1.9e-15 Score=132.34 Aligned_cols=78 Identities=14% Similarity=0.279 Sum_probs=71.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHH----HhhccCCCeEEEEEe---cCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEe
Q psy93 111 ANNCRLYLGNIGGDITENDII----ELFKPYGETQELFIN---KEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRF 183 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~----~~F~~~G~V~~v~i~---~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~ 183 (503)
.++++|||+|||+.+++++|+ ++|++||+|.+|.+. +++|||||+|.+.++|.+||..|||..|.|++|.|.|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~ 106 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITF 106 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEE
Confidence 456899999999999999876 699999999999985 4589999999999999999999999999999999999
Q ss_pred ccccc
Q psy93 184 APINA 188 (503)
Q Consensus 184 a~~~~ 188 (503)
+....
T Consensus 107 a~~~~ 111 (127)
T 2a3j_A 107 SETPQ 111 (127)
T ss_dssp CCCCC
T ss_pred ccCcc
Confidence 97643
No 93
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.5e-15 Score=126.04 Aligned_cols=75 Identities=25% Similarity=0.533 Sum_probs=69.9
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecccc
Q psy93 111 ANNCRLYLGNIGG-DITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPIN 187 (503)
Q Consensus 111 ~~~~~l~V~nLp~-~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~~ 187 (503)
.+.++|||+|||+ ++|+++|+++|+.||+|.+|.|. ++||||+|.+.++|.+|+..||+..+.|++|.|.++.+.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSN 83 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcC
Confidence 4578999999998 99999999999999999999995 899999999999999999999999999999999998653
No 94
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.61 E-value=2.2e-15 Score=125.63 Aligned_cols=74 Identities=22% Similarity=0.405 Sum_probs=68.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEE--------EEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQE--------LFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGR 177 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~--------v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~ 177 (503)
..++|||+|||.++|+++|+++|+.||.|.. |.|+.+ +|||||+|.+.++|.+|++.||+..|.|+
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~ 91 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 91 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 4689999999999999999999999999999 888654 57999999999999999999999999999
Q ss_pred eEEEEecc
Q psy93 178 SLKIRFAP 185 (503)
Q Consensus 178 ~l~V~~a~ 185 (503)
.|+|.+|+
T Consensus 92 ~l~V~~A~ 99 (99)
T 2la6_A 92 PIKVSFAT 99 (99)
T ss_dssp BCEEEECC
T ss_pred EEEEEecC
Confidence 99999873
No 95
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.61 E-value=2.1e-15 Score=129.92 Aligned_cols=75 Identities=23% Similarity=0.492 Sum_probs=70.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC-----CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI 186 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~-----kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~ 186 (503)
..++|||+|||.++|+++|+++|+.||.|..|.|..+ ++||||+|.+.++|.+||..||+..|.|++|.|.++.+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 85 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKK 85 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 4578999999999999999999999999999999864 59999999999999999999999999999999999965
No 96
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.4e-15 Score=126.58 Aligned_cols=76 Identities=25% Similarity=0.419 Sum_probs=70.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeE-EEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCce----EE
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQ-ELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRS----LK 180 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~-~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~----l~ 180 (503)
..++|||+|||+++++++|+++|+.||+|. +|.|+.+ ++||||+|.+.++|.+|+..||+..|.|+. |+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~ 87 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFK 87 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEE
Confidence 568999999999999999999999999999 9999755 489999999999999999999999999999 99
Q ss_pred EEecccc
Q psy93 181 IRFAPIN 187 (503)
Q Consensus 181 V~~a~~~ 187 (503)
|.|+.+.
T Consensus 88 v~~a~~~ 94 (99)
T 2div_A 88 LNYATYS 94 (99)
T ss_dssp EEETTCC
T ss_pred EeecCCC
Confidence 9998764
No 97
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=2.1e-15 Score=128.14 Aligned_cols=76 Identities=22% Similarity=0.331 Sum_probs=70.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec------CCCceEEeeCCHHHHHHHHHHhC------CccccCceE
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINK------EKMFGFIRMDYKHNADKAKAKLD------GHVLKGRSL 179 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~------~kg~aFV~F~~~e~A~~Ai~~l~------g~~l~g~~l 179 (503)
..++|||+|||+++|+++|+++|+.||+|..|.|+. +++||||+|.+.++|.+||..|| +..|.|++|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l 93 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQL 93 (111)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEE
Confidence 467899999999999999999999999999999973 47899999999999999999999 999999999
Q ss_pred EEEecccc
Q psy93 180 KIRFAPIN 187 (503)
Q Consensus 180 ~V~~a~~~ 187 (503)
.|.++.+.
T Consensus 94 ~v~~a~~~ 101 (111)
T 1x4h_A 94 KVDLAVTR 101 (111)
T ss_dssp EEECCCCC
T ss_pred EEEECCCC
Confidence 99998764
No 98
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=3.2e-15 Score=124.21 Aligned_cols=75 Identities=20% Similarity=0.311 Sum_probs=68.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEE--ecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecccc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFI--NKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPIN 187 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i--~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~~ 187 (503)
..++|||+|||+++|+++|+++|+.||.|. +.+ .++++||||+|.+.++|.+||..||+..|.|++|.|.++.+.
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 467999999999999999999999999995 444 466899999999999999999999999999999999998764
No 99
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.60 E-value=1.9e-15 Score=127.65 Aligned_cols=74 Identities=23% Similarity=0.391 Sum_probs=69.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC-----CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~-----kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
..++|||+|||+++|+++|+++|+.||.|.+|.|+.+ ++||||+|.+.++|.+||..||+..|.|++|.|.++.
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 5689999999999999999999999999999999743 7899999999999999999999999999999999875
No 100
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=7.7e-16 Score=126.78 Aligned_cols=75 Identities=20% Similarity=0.358 Sum_probs=68.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCC-eEEEEEecCCCceEEeeCCHHHHHHHHHHhCC-ccccCceEEEEecccc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGE-TQELFINKEKMFGFIRMDYKHNADKAKAKLDG-HVLKGRSLKIRFAPIN 187 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~-V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g-~~l~g~~l~V~~a~~~ 187 (503)
..++|||+|||+++|+++|+++|++||. |..+.+ .+++||||+|.+.++|.+|+..||+ ..|.|++|+|.++.+.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence 4578999999999999999999999999 555555 5799999999999999999999999 9999999999999764
No 101
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.60 E-value=2.2e-15 Score=127.99 Aligned_cols=76 Identities=22% Similarity=0.465 Sum_probs=71.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEec
Q psy93 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a 184 (503)
...++|||+|||.++|+++|+++|+.||.|..|.|+.+ ++||||+|.+.++|.+||..||+..|.|++|.|.|+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 45689999999999999999999999999999999754 689999999999999999999999999999999998
Q ss_pred cc
Q psy93 185 PI 186 (503)
Q Consensus 185 ~~ 186 (503)
.+
T Consensus 104 ~~ 105 (110)
T 1oo0_B 104 FV 105 (110)
T ss_dssp EE
T ss_pred cc
Confidence 65
No 102
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.60 E-value=2e-15 Score=127.28 Aligned_cols=77 Identities=25% Similarity=0.413 Sum_probs=70.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec------CCCceEEeeCCHHHHHHHHHHhCCccc---cCceEEE
Q psy93 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINK------EKMFGFIRMDYKHNADKAKAKLDGHVL---KGRSLKI 181 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~------~kg~aFV~F~~~e~A~~Ai~~l~g~~l---~g~~l~V 181 (503)
...++|||+|||.++|+++|+++|+.||.|..|.|+. +++||||+|.+.++|.+||..||+..+ .+++|.|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 3567899999999999999999999999999999975 468999999999999999999999987 8899999
Q ss_pred Eecccc
Q psy93 182 RFAPIN 187 (503)
Q Consensus 182 ~~a~~~ 187 (503)
.++.+.
T Consensus 91 ~~a~~~ 96 (106)
T 2dgp_A 91 KPADSE 96 (106)
T ss_dssp EECCCC
T ss_pred EECCcc
Confidence 999764
No 103
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.60 E-value=2.3e-15 Score=127.12 Aligned_cols=76 Identities=18% Similarity=0.227 Sum_probs=70.1
Q ss_pred CCcEEEEcCCCCCC------CHHHHHHhhccCCCeEEEEEe----cCCCceEEeeCCHHHHHHHHHHhCCccccCc-eEE
Q psy93 112 NNCRLYLGNIGGDI------TENDIIELFKPYGETQELFIN----KEKMFGFIRMDYKHNADKAKAKLDGHVLKGR-SLK 180 (503)
Q Consensus 112 ~~~~l~V~nLp~~~------te~~L~~~F~~~G~V~~v~i~----~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~-~l~ 180 (503)
..++|||+|||+.+ |+++|+++|++||+|.+|.|+ +++|||||+|.+.++|.+||..||+..|.|+ +|+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~ 93 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 93 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEE
Confidence 46799999999999 789999999999999999997 3479999999999999999999999999998 999
Q ss_pred EEecccc
Q psy93 181 IRFAPIN 187 (503)
Q Consensus 181 V~~a~~~ 187 (503)
|.++...
T Consensus 94 V~~a~~~ 100 (105)
T 2nlw_A 94 VNLFTDF 100 (105)
T ss_dssp EECSCCC
T ss_pred EEEcchH
Confidence 9998653
No 104
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.59 E-value=2.2e-15 Score=124.85 Aligned_cols=77 Identities=17% Similarity=0.451 Sum_probs=72.1
Q ss_pred CCcEEEEcCCCCCCCHHHHH----HhhccCCCeEEEEEe---cCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEec
Q psy93 112 NNCRLYLGNIGGDITENDII----ELFKPYGETQELFIN---KEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~----~~F~~~G~V~~v~i~---~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a 184 (503)
++++|||+|||.++++++|+ ++|+.||.|..|.|. ++++||||+|.+.++|.+|+..||+..|.|++|.|.|+
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA 86 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 56799999999999999999 999999999999997 45899999999999999999999999999999999999
Q ss_pred cccc
Q psy93 185 PINA 188 (503)
Q Consensus 185 ~~~~ 188 (503)
.+..
T Consensus 87 ~~~~ 90 (97)
T 1nu4_A 87 KTDS 90 (97)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 7654
No 105
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.59 E-value=7.4e-16 Score=129.03 Aligned_cols=76 Identities=14% Similarity=0.135 Sum_probs=70.4
Q ss_pred CCcEEEEcCCCC------CCCHHHHHHhhccCCCeEEEEEec------CCCceEEeeCCHHHHHHHHHHhCCccccC-ce
Q psy93 112 NNCRLYLGNIGG------DITENDIIELFKPYGETQELFINK------EKMFGFIRMDYKHNADKAKAKLDGHVLKG-RS 178 (503)
Q Consensus 112 ~~~~l~V~nLp~------~~te~~L~~~F~~~G~V~~v~i~~------~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g-~~ 178 (503)
.+++|||+|||+ ++++++|+++|++||+|.+|.|+. ++|||||+|.+.++|.+||..||+..|.| ++
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 357899999999 999999999999999999999863 47999999999999999999999999999 99
Q ss_pred EEEEecccc
Q psy93 179 LKIRFAPIN 187 (503)
Q Consensus 179 l~V~~a~~~ 187 (503)
|.|.++.+.
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999998654
No 106
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.7e-15 Score=129.21 Aligned_cols=79 Identities=15% Similarity=0.347 Sum_probs=72.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHH---HhhccCCCeEEEEEecC---------CCceEEeeCCHHHHHHHHHHhCCccccCce
Q psy93 111 ANNCRLYLGNIGGDITENDII---ELFKPYGETQELFINKE---------KMFGFIRMDYKHNADKAKAKLDGHVLKGRS 178 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~---~~F~~~G~V~~v~i~~~---------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~ 178 (503)
...++|||+|||+++++++|+ ++|++||+|..|.|+++ +|||||+|.+.++|.+||..||+..|.|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 346789999999999999999 99999999999999754 369999999999999999999999999999
Q ss_pred EEEEecccccc
Q psy93 179 LKIRFAPINAA 189 (503)
Q Consensus 179 l~V~~a~~~~~ 189 (503)
|+|.++.+..+
T Consensus 93 l~V~~a~~k~~ 103 (111)
T 2cpi_A 93 LKASLGTTKYC 103 (111)
T ss_dssp EEEESCCCCSC
T ss_pred EEEEecccccc
Confidence 99999987654
No 107
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=3.2e-15 Score=127.74 Aligned_cols=75 Identities=15% Similarity=0.256 Sum_probs=70.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC-----CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI 186 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~-----kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~ 186 (503)
..++|||+|||+++++++|+++|+.||.|..|.|+.+ ++||||+|.+.++|.+||..||+..|.|+.|.|.++..
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 93 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDER 93 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence 3568999999999999999999999999999999764 68999999999999999999999999999999999864
No 108
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.2e-15 Score=127.70 Aligned_cols=77 Identities=25% Similarity=0.424 Sum_probs=71.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCC-eEEEEEe-------cCCCceEEeeCCHHHHHHHHHHhC--CccccCceEEE
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGE-TQELFIN-------KEKMFGFIRMDYKHNADKAKAKLD--GHVLKGRSLKI 181 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~-V~~v~i~-------~~kg~aFV~F~~~e~A~~Ai~~l~--g~~l~g~~l~V 181 (503)
+.++|||+|||+++|+++|+++|+.||. |..|.|+ ++++||||+|.+.++|.+|+..|+ +..|.|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4689999999999999999999999998 9999997 568999999999999999999996 58999999999
Q ss_pred Eeccccc
Q psy93 182 RFAPINA 188 (503)
Q Consensus 182 ~~a~~~~ 188 (503)
.|+.+..
T Consensus 87 ~~a~~~~ 93 (109)
T 2dis_A 87 DWAEPEI 93 (109)
T ss_dssp EESCSSC
T ss_pred EEcCCCC
Confidence 9997643
No 109
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.9e-15 Score=127.02 Aligned_cols=76 Identities=18% Similarity=0.388 Sum_probs=70.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcc-CCCeEEEEEecC-----CCceEEeeCCHHHHHHHHHHhCCcc-ccCceEEEEec
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKP-YGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLDGHV-LKGRSLKIRFA 184 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~-~G~V~~v~i~~~-----kg~aFV~F~~~e~A~~Ai~~l~g~~-l~g~~l~V~~a 184 (503)
..++|||+|||+++|+++|+++|+. ||.|.+|.|+.+ ++||||+|.+.++|.+||..||+.. |.|++|.|.++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a 87 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 87 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEc
Confidence 4678999999999999999999999 999999999764 7899999999999999999999999 99999999998
Q ss_pred ccc
Q psy93 185 PIN 187 (503)
Q Consensus 185 ~~~ 187 (503)
.+.
T Consensus 88 ~~~ 90 (104)
T 2dhg_A 88 IPK 90 (104)
T ss_dssp CCC
T ss_pred cCC
Confidence 654
No 110
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.58 E-value=2.8e-15 Score=131.62 Aligned_cols=76 Identities=28% Similarity=0.474 Sum_probs=70.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec------CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINK------EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~------~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
+.++|||+|||+++|+++|+++|+.||+|..|.|+. .++||||+|.+.++|.+||..||+..|.|++|.|.|+.
T Consensus 45 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~ 124 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSI 124 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 457899999999999999999999999999999974 47899999999999999999999999999999999986
Q ss_pred cc
Q psy93 186 IN 187 (503)
Q Consensus 186 ~~ 187 (503)
+.
T Consensus 125 ~~ 126 (129)
T 2kxn_B 125 TK 126 (129)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 111
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.58 E-value=4.1e-15 Score=133.62 Aligned_cols=79 Identities=22% Similarity=0.527 Sum_probs=73.9
Q ss_pred CcCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC-CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecccc
Q psy93 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPIN 187 (503)
Q Consensus 109 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~-kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~~ 187 (503)
.....++|||+|||+++|+++|+++|+.||.|.+|.|+++ +|||||+|.+.++|.+||..||+..|.|++|.|.|+.+.
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 3446789999999999999999999999999999999876 999999999999999999999999999999999998764
No 112
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.58 E-value=2.7e-15 Score=122.15 Aligned_cols=74 Identities=23% Similarity=0.390 Sum_probs=69.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI 186 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~ 186 (503)
.++|||+|||+++|+++|+++|+.||.|..|.++.+ ++||||+|.+.++|.+|+ .||+..|.|+.|.|.++.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 468999999999999999999999999999999754 789999999999999999 8999999999999999865
Q ss_pred c
Q psy93 187 N 187 (503)
Q Consensus 187 ~ 187 (503)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 113
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.8e-15 Score=127.95 Aligned_cols=77 Identities=22% Similarity=0.374 Sum_probs=70.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeE--------EEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccC
Q psy93 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQ--------ELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKG 176 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~--------~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g 176 (503)
...++|||+|||+++|+++|+++|+.||.|. .|.|+.+ ++||||+|.+.++|.+||..||+..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4568999999999999999999999999998 5888644 6899999999999999999999999999
Q ss_pred ceEEEEecccc
Q psy93 177 RSLKIRFAPIN 187 (503)
Q Consensus 177 ~~l~V~~a~~~ 187 (503)
++|+|.++.+.
T Consensus 93 ~~l~V~~a~~~ 103 (113)
T 2cpe_A 93 SKLKVSLARKK 103 (113)
T ss_dssp EECEEECSSCC
T ss_pred CEEEEEECCCC
Confidence 99999998764
No 114
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4.2e-15 Score=124.99 Aligned_cols=74 Identities=23% Similarity=0.376 Sum_probs=68.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC-------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEec
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~-------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a 184 (503)
+.++|||+|||+++|+++|+++|+.|| |..|.|+.+ ++||||+|.+.++|.+|| .||+..|.|+.|.|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEc
Confidence 457999999999999999999999999 999999643 689999999999999999 89999999999999999
Q ss_pred ccc
Q psy93 185 PIN 187 (503)
Q Consensus 185 ~~~ 187 (503)
.+.
T Consensus 92 ~~~ 94 (104)
T 1wi8_A 92 DQA 94 (104)
T ss_dssp CCC
T ss_pred cCC
Confidence 764
No 115
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=9.8e-15 Score=124.77 Aligned_cols=77 Identities=19% Similarity=0.449 Sum_probs=70.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC-----CCceEEeeCCHHHHHHHHHHhCCccc--------cCc
Q psy93 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLDGHVL--------KGR 177 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~-----kg~aFV~F~~~e~A~~Ai~~l~g~~l--------~g~ 177 (503)
...++|||+|||+++|+++|+++|+.||.|..|.|+.+ ++||||+|.+.++|.+||..||+..| .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 35689999999999999999999999999999999754 68999999999999999999999999 578
Q ss_pred eEEEEecccc
Q psy93 178 SLKIRFAPIN 187 (503)
Q Consensus 178 ~l~V~~a~~~ 187 (503)
+|.|.|+.+.
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999998754
No 116
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.3e-15 Score=128.89 Aligned_cols=74 Identities=19% Similarity=0.433 Sum_probs=68.5
Q ss_pred CCcEEEE--cCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccc-----cCceEEEEec
Q psy93 112 NNCRLYL--GNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVL-----KGRSLKIRFA 184 (503)
Q Consensus 112 ~~~~l~V--~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l-----~g~~l~V~~a 184 (503)
++++||| +|||.++|+++|+++|++||.|.+|.|+.+++||||+|.+.++|.+|++.|||..| .+++|.|.++
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a 103 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFV 103 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEec
Confidence 3568999 77999999999999999999999999998999999999999999999999999988 6889999876
Q ss_pred c
Q psy93 185 P 185 (503)
Q Consensus 185 ~ 185 (503)
.
T Consensus 104 ~ 104 (114)
T 2cq2_A 104 E 104 (114)
T ss_dssp S
T ss_pred c
Confidence 4
No 117
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.58 E-value=5.8e-15 Score=128.30 Aligned_cols=77 Identities=21% Similarity=0.362 Sum_probs=71.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec-----CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINK-----EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI 186 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~-----~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~ 186 (503)
..++|||+|||+++++++|+++|+.||.|..|.|.. +++||||+|.+.++|.+|+..||+..|.|++|+|.++.+
T Consensus 34 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 113 (124)
T 2kt5_A 34 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS 113 (124)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCC
Confidence 467999999999999999999999999999999975 478999999999999999999999999999999999976
Q ss_pred cc
Q psy93 187 NA 188 (503)
Q Consensus 187 ~~ 188 (503)
..
T Consensus 114 ~~ 115 (124)
T 2kt5_A 114 QI 115 (124)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 118
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.1e-15 Score=123.53 Aligned_cols=74 Identities=23% Similarity=0.375 Sum_probs=68.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
+.++|||+|||+++++++|+++|+.||+|..|.|+.+ ++||||+|.+.++|.+|+..||+..|.|+.|+|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 4679999999999999999999999999999999754 7899999999999999999999999999999887653
No 119
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.58 E-value=5.9e-15 Score=123.45 Aligned_cols=80 Identities=23% Similarity=0.291 Sum_probs=73.2
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
..++|||+|||.++|+++|+++|+.||.|.+|.|++| .++.++|||||+|.+.++|.+|+..|| +..+ .+++|.|
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ln-g~~~---~gr~l~V 93 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLN-GLRL---QSKTIKV 93 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHT-TCEE---TTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhC-CCEE---CCEEEEE
Confidence 3578999999999999999999999999999999998 578999999999999999999999997 6666 6899999
Q ss_pred ecCCc
Q psy93 265 EPLEL 269 (503)
Q Consensus 265 ~~~~~ 269 (503)
.++.+
T Consensus 94 ~~AkP 98 (99)
T 4fxv_A 94 SYARP 98 (99)
T ss_dssp EECCB
T ss_pred EEeeC
Confidence 98864
No 120
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.58 E-value=1e-15 Score=125.52 Aligned_cols=74 Identities=20% Similarity=0.267 Sum_probs=64.9
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCC--CeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 114 CRLYLGNIGGDITENDIIELFKPYG--ETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 114 ~~l~V~nLp~~~te~~L~~~F~~~G--~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
.+|||+|||+++|+++|+++|+.|| .|.+|.|+.+ +|||||+|.+.++|.+||+.||+..|.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4699999999999999999999999 9999998653 5799999999999999999999999999999999886
Q ss_pred cc
Q psy93 186 IN 187 (503)
Q Consensus 186 ~~ 187 (503)
+.
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 121
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.58 E-value=5.1e-15 Score=131.10 Aligned_cols=78 Identities=23% Similarity=0.370 Sum_probs=71.9
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEe
Q psy93 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRF 183 (503)
Q Consensus 110 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~ 183 (503)
....++|||+|||.++|+++|+++|+.||+|.+|.|+.+ ++||||+|.+.++|.+||..||+..|.|+.|+|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345689999999999999999999999999999999743 67999999999999999999999999999999999
Q ss_pred cccc
Q psy93 184 APIN 187 (503)
Q Consensus 184 a~~~ 187 (503)
+.+.
T Consensus 119 a~~~ 122 (139)
T 1u6f_A 119 AASG 122 (139)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 9754
No 122
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.57 E-value=2.3e-15 Score=125.97 Aligned_cols=76 Identities=24% Similarity=0.365 Sum_probs=67.6
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC-------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEE
Q psy93 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIR 182 (503)
Q Consensus 110 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~-------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~ 182 (503)
....++|||+|||.++++++|+++|+.|| |.+|.|+.+ +|||||+|.+.++|.+|| .||+..|.|+.|.|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34568999999999999999999999999 999999653 689999999999999999 899999999999999
Q ss_pred ecccc
Q psy93 183 FAPIN 187 (503)
Q Consensus 183 ~a~~~ 187 (503)
++.+.
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 98754
No 123
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.57 E-value=1.3e-14 Score=126.28 Aligned_cols=76 Identities=26% Similarity=0.277 Sum_probs=69.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCc-eEEeeCCHHHHHHHHHHhCCccccC--ceEEEEeccccc
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMF-GFIRMDYKHNADKAKAKLDGHVLKG--RSLKIRFAPINA 188 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~-aFV~F~~~e~A~~Ai~~l~g~~l~g--~~l~V~~a~~~~ 188 (503)
...|||+|||+.+|+++|+++|++||.|.+|.|....|| |||+|.+.++|..|++.|||..|.| ++|+|.++.+..
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 345789999999999999999999999999998765696 9999999999999999999999987 699999998765
No 124
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.57 E-value=1.8e-15 Score=121.37 Aligned_cols=69 Identities=19% Similarity=0.287 Sum_probs=64.1
Q ss_pred CcEEEEcCCCCCC------CHHHHHHhhccCCCeEEEEEec----CCCceEEeeCCHHHHHHHHHHhCCccccCc-eEEE
Q psy93 113 NCRLYLGNIGGDI------TENDIIELFKPYGETQELFINK----EKMFGFIRMDYKHNADKAKAKLDGHVLKGR-SLKI 181 (503)
Q Consensus 113 ~~~l~V~nLp~~~------te~~L~~~F~~~G~V~~v~i~~----~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~-~l~V 181 (503)
+++|||+|||+++ ++++|+++|++||+|.+|.|++ ++|||||+|.+.++|.+|+..||+..|.|+ +|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 3689999999999 7799999999999999999873 479999999999999999999999999999 8876
No 125
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.57 E-value=4.8e-15 Score=120.32 Aligned_cols=73 Identities=23% Similarity=0.473 Sum_probs=66.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEec
Q psy93 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a 184 (503)
...++|||+|||+++++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|++ +++..|.|+.|.|.+|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 35679999999999999999999999999999999754 6799999999999999996 5888999999999875
No 126
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.9e-15 Score=126.64 Aligned_cols=74 Identities=18% Similarity=0.462 Sum_probs=69.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
..++|||+|||+++|+++|+++|+.||+|..|.|+.+ ++||||+|.+.++|.+||..|++ .|.|++|.|.++.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~ 94 (116)
T 2cqd_A 16 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAY 94 (116)
T ss_dssp SSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEEST
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcc
Confidence 5679999999999999999999999999999999754 68999999999999999999998 8999999999995
Q ss_pred c
Q psy93 186 I 186 (503)
Q Consensus 186 ~ 186 (503)
+
T Consensus 95 ~ 95 (116)
T 2cqd_A 95 L 95 (116)
T ss_dssp T
T ss_pred c
Confidence 4
No 127
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3e-15 Score=125.66 Aligned_cols=75 Identities=24% Similarity=0.402 Sum_probs=70.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI 186 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~ 186 (503)
.++|||+|||+++++++|+++|+.||.|..|.|+.+ ++||||+|.+.++|.+|++.||+..|.|+.|.|.++.+
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 468999999999999999999999999999999754 68999999999999999999999999999999999976
Q ss_pred c
Q psy93 187 N 187 (503)
Q Consensus 187 ~ 187 (503)
.
T Consensus 88 ~ 88 (104)
T 1p1t_A 88 E 88 (104)
T ss_dssp T
T ss_pred c
Confidence 4
No 128
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.4e-15 Score=127.04 Aligned_cols=74 Identities=15% Similarity=0.267 Sum_probs=69.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec------CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINK------EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~------~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
..++|||+|||.++++++|+++|+.||.|..|.|+. +++||||+|.+.++|.+|| .||+..|.|+.|.|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 457999999999999999999999999999999963 4689999999999999999 999999999999999986
Q ss_pred c
Q psy93 186 I 186 (503)
Q Consensus 186 ~ 186 (503)
+
T Consensus 103 ~ 103 (114)
T 2cq4_A 103 A 103 (114)
T ss_dssp H
T ss_pred C
Confidence 4
No 129
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.57 E-value=5.6e-15 Score=133.62 Aligned_cols=78 Identities=24% Similarity=0.455 Sum_probs=71.9
Q ss_pred CcCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEE
Q psy93 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIR 182 (503)
Q Consensus 109 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~ 182 (503)
.....++|||+|||+++|+++|+++|+.||+|..|.|+.+ ++||||+|.+.++|.+||..||+..|.+++|+|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3346789999999999999999999999999999999643 5799999999999999999999999999999999
Q ss_pred eccc
Q psy93 183 FAPI 186 (503)
Q Consensus 183 ~a~~ 186 (503)
|+.+
T Consensus 115 ~a~~ 118 (156)
T 1h2v_Z 115 WDAG 118 (156)
T ss_dssp EESC
T ss_pred ECCC
Confidence 9975
No 130
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.56 E-value=7.2e-15 Score=123.36 Aligned_cols=74 Identities=24% Similarity=0.394 Sum_probs=68.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
..++|||+|||+++++++|+++|+.|| |..|.|+.+ ++||||+|.+.++|.+|| .||+..|.|++|.|.++.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAE 91 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEec
Confidence 457999999999999999999999997 999999754 579999999999999999 899999999999999997
Q ss_pred cc
Q psy93 186 IN 187 (503)
Q Consensus 186 ~~ 187 (503)
+.
T Consensus 92 ~~ 93 (103)
T 2dng_A 92 GR 93 (103)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 131
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.56 E-value=4.5e-15 Score=120.34 Aligned_cols=71 Identities=35% Similarity=0.601 Sum_probs=67.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccC----C-------CeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEE
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPY----G-------ETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLK 180 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~ 180 (503)
..++|||+|||+++|+++|+++|+.| | .|.+|.+.++++||||+|.+.++|.+|+ .||+..|.|+.|+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 83 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 83 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEEE
Confidence 35789999999999999999999999 8 9999999999999999999999999999 9999999999999
Q ss_pred EEe
Q psy93 181 IRF 183 (503)
Q Consensus 181 V~~ 183 (503)
|+.
T Consensus 84 V~r 86 (87)
T 2hzc_A 84 IRR 86 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 974
No 132
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=3.1e-15 Score=118.42 Aligned_cols=70 Identities=24% Similarity=0.571 Sum_probs=65.8
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEec
Q psy93 114 CRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184 (503)
Q Consensus 114 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a 184 (503)
|+|||+|||+++++++|+++|++||+|..|.++.+ +|||||+|.+.++|.+|+..++ ..+.|++|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 57999999999999999999999999999999754 6899999999999999999999 9999999999986
No 133
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.56 E-value=4.5e-15 Score=127.52 Aligned_cols=73 Identities=12% Similarity=0.192 Sum_probs=66.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCce-----EEEEeccc
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRS-----LKIRFAPI 186 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~-----l~V~~a~~ 186 (503)
.++|||+|||+++|+++|+++|++||+|..|.|+.+ +||||+|.+.++|.+||+.||+..|.|+. |+|..+.+
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~ 93 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 93 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC-
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCC
Confidence 468999999999999999999999999999999877 99999999999999999999999999998 66665543
No 134
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.56 E-value=7.8e-15 Score=124.79 Aligned_cols=78 Identities=22% Similarity=0.465 Sum_probs=67.4
Q ss_pred CcCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEE
Q psy93 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIR 182 (503)
Q Consensus 109 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~ 182 (503)
.....++|||+|||.++|+++|+++|+.||.|.+|.|+.+ +|||||+|.+.++|.+||..+ +..|.|+.|.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3345688999999999999999999999999999999753 689999999999999999976 599999999999
Q ss_pred ecccc
Q psy93 183 FAPIN 187 (503)
Q Consensus 183 ~a~~~ 187 (503)
++.+.
T Consensus 100 ~a~~~ 104 (109)
T 2rs2_A 100 VAFPR 104 (109)
T ss_dssp ECCCC
T ss_pred EccCC
Confidence 98653
No 135
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=3.2e-15 Score=124.23 Aligned_cols=75 Identities=13% Similarity=0.186 Sum_probs=67.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec------CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINK------EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~------~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
..++|||+|||+++++++|+++|+.||.|..+.++. +++||||+|.+.++|.+||..||+..|.|++|+|.++.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 357899999999999999999999999998665542 36899999999999999999999999999999999986
Q ss_pred c
Q psy93 186 I 186 (503)
Q Consensus 186 ~ 186 (503)
.
T Consensus 94 ~ 94 (98)
T 2cqp_A 94 G 94 (98)
T ss_dssp C
T ss_pred C
Confidence 4
No 136
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.2e-14 Score=124.42 Aligned_cols=77 Identities=29% Similarity=0.379 Sum_probs=69.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCe----EEEEEe--cCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEec
Q psy93 111 ANNCRLYLGNIGGDITENDIIELFKPYGET----QELFIN--KEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V----~~v~i~--~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a 184 (503)
.++++|||+|||.++|+++|+++|+.||.| ..+.+. ++++||||+|.+.++|.+||..||+..|.|++|.|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 456899999999999999999999999998 566654 45799999999999999999999999999999999999
Q ss_pred ccc
Q psy93 185 PIN 187 (503)
Q Consensus 185 ~~~ 187 (503)
.+.
T Consensus 103 ~~~ 105 (115)
T 2cpx_A 103 KNK 105 (115)
T ss_dssp CCC
T ss_pred cCC
Confidence 764
No 137
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.55 E-value=2.2e-15 Score=124.41 Aligned_cols=74 Identities=14% Similarity=0.175 Sum_probs=66.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec------CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINK------EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI 186 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~------~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~ 186 (503)
.++|||+|||+++|+++|+++|+.||.|..+.++. +++||||+|.+.++|.+||..||+..|.|++|+|.++.+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~s 94 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPSS 94 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC-
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEeccC
Confidence 46899999999999999999999999998766653 368999999999999999999999999999999998753
No 138
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.1e-14 Score=119.33 Aligned_cols=74 Identities=14% Similarity=0.242 Sum_probs=68.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC-----CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI 186 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~-----kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~ 186 (503)
..++|||+|||+++|+++|+++|+.| .|..|.|+.+ +|||||+|.+.++|.+||. ||+..|.|+.|.|.++.+
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~ 86 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKS 86 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESS
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCc
Confidence 45789999999999999999999999 9999999754 6799999999999999999 999999999999999865
Q ss_pred c
Q psy93 187 N 187 (503)
Q Consensus 187 ~ 187 (503)
.
T Consensus 87 ~ 87 (91)
T 2dgw_A 87 G 87 (91)
T ss_dssp C
T ss_pred C
Confidence 4
No 139
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=7.8e-15 Score=125.87 Aligned_cols=75 Identities=20% Similarity=0.427 Sum_probs=69.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
..++|||+|||+++|+++|+++|+.||.|..|.|+.+ ++||||+|.+.++|.+||.. ++..|.|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 4589999999999999999999999999999999754 68999999999999999997 9999999999999987
Q ss_pred cc
Q psy93 186 IN 187 (503)
Q Consensus 186 ~~ 187 (503)
+.
T Consensus 105 ~~ 106 (116)
T 1x4b_A 105 AR 106 (116)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 140
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.55 E-value=1.4e-14 Score=126.75 Aligned_cols=76 Identities=20% Similarity=0.356 Sum_probs=69.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec-CCCc-eEEeeCCHHHHHHHHHHhCCccccC--ceEEEEeccccc
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINK-EKMF-GFIRMDYKHNADKAKAKLDGHVLKG--RSLKIRFAPINA 188 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~-~kg~-aFV~F~~~e~A~~Ai~~l~g~~l~g--~~l~V~~a~~~~ 188 (503)
-..|||+||++.+|+++|+++|++||.|.+|.|.. .++| |||+|.+.++|.+|++.|||..|.+ ++|+|.|+++..
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 35789999999999999999999999999998864 4677 9999999999999999999999998 999999998764
No 141
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.55 E-value=4.9e-15 Score=116.83 Aligned_cols=69 Identities=16% Similarity=0.444 Sum_probs=64.6
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEec
Q psy93 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184 (503)
Q Consensus 115 ~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a 184 (503)
+|||+|||+++|+++|+++|+.||+|.+|.++.+ +|||||+|.+.++|.+|++ ||+..|.|++|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 4999999999999999999999999999998643 5899999999999999998 9999999999999875
No 142
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.55 E-value=1.9e-14 Score=127.19 Aligned_cols=73 Identities=21% Similarity=0.521 Sum_probs=68.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEec
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a 184 (503)
..++|||+|||+++|+++|+++|+.||+|..|.|+.+ ++||||+|.+.++|.+|++.||+..|.|++|+|.+|
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 4578999999999999999999999999999999653 789999999999999999999999999999999875
No 143
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.55 E-value=7.1e-15 Score=133.32 Aligned_cols=76 Identities=21% Similarity=0.364 Sum_probs=69.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCC--CeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEe
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYG--ETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRF 183 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G--~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~ 183 (503)
..++|||+|||+++|+++|+++|+.|| .|.+|.|+.+ +|||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 357999999999999999999999999 9999999744 68999999999999999999999999999999999
Q ss_pred cccc
Q psy93 184 APIN 187 (503)
Q Consensus 184 a~~~ 187 (503)
+.+.
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9653
No 144
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.6e-14 Score=120.77 Aligned_cols=76 Identities=20% Similarity=0.258 Sum_probs=66.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEE--ecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecccc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFI--NKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPIN 187 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i--~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~~ 187 (503)
..++|||+|||+++|+++|+++|+.||.|.-+.. .++++||||+|.+.++|.+||..||+..|.|++|+|.++.+.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 4689999999999999999999999998832221 134899999999999999999999999999999999999764
No 145
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.54 E-value=9.1e-15 Score=133.64 Aligned_cols=76 Identities=22% Similarity=0.468 Sum_probs=70.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
..++|||+|||+++|+++|+.+|+.||+|..|.|+.+ ++||||+|.+.++|.+||..||+..|.|++|.|.|+.
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 150 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 150 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 4678999999999999999999999999999999764 6899999999999999999999999999999999986
Q ss_pred cc
Q psy93 186 IN 187 (503)
Q Consensus 186 ~~ 187 (503)
+.
T Consensus 151 ~~ 152 (165)
T 1rk8_A 151 VK 152 (165)
T ss_dssp EC
T ss_pred CC
Confidence 53
No 146
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.54 E-value=3.2e-15 Score=129.82 Aligned_cols=75 Identities=24% Similarity=0.432 Sum_probs=69.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
..++|||+|||.++|+++|+++|+.||.|.+|.|+.+ ++||||+|.+.++|.+|| .||+..|.|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4679999999999999999999999999999999753 689999999999999999 799999999999999987
Q ss_pred cc
Q psy93 186 IN 187 (503)
Q Consensus 186 ~~ 187 (503)
+.
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 147
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.54 E-value=1.6e-14 Score=125.29 Aligned_cols=75 Identities=24% Similarity=0.401 Sum_probs=70.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecccc
Q psy93 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPIN 187 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~~ 187 (503)
...++|||+|| ++|+++|+++|+.||.|.+|.|.++++||||+|.+.++|.+||..||+..|.|++|.|.|+.+.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 35689999996 6999999999999999999999999999999999999999999999999999999999999764
No 148
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.4e-14 Score=119.74 Aligned_cols=76 Identities=22% Similarity=0.292 Sum_probs=69.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEE-EEecCC--CceEEeeCCHHHHHHHHHHhCCccccCceEEEEecccc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQEL-FINKEK--MFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPIN 187 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v-~i~~~k--g~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~~ 187 (503)
..++|||+|||+++|+++|+++|+.||.|.+| .|+.++ +.|||+|.+.++|.+||..||+..|.|++|.|.++.+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 35789999999999999999999999999999 476553 45999999999999999999999999999999998764
No 149
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=2.4e-14 Score=117.16 Aligned_cols=76 Identities=16% Similarity=0.287 Sum_probs=67.7
Q ss_pred cEEEEcCCCCCCCHHH----HHHhhccC-CCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccccc
Q psy93 114 CRLYLGNIGGDITEND----IIELFKPY-GETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINA 188 (503)
Q Consensus 114 ~~l~V~nLp~~~te~~----L~~~F~~~-G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~~~ 188 (503)
|.|||+|||.++++++ |+++|++| |+|.+|. .|+|||.|.+.++|.+|++.|+|..|.|++|+|.+++...
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~s 85 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT----GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNR 85 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC----TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSC
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe----cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCc
Confidence 4599999999999988 55899999 5999993 4999999999999999999999999999999999998876
Q ss_pred ceecc
Q psy93 189 AIKVK 193 (503)
Q Consensus 189 ~L~V~ 193 (503)
.++..
T Consensus 86 d~~~~ 90 (96)
T 2diu_A 86 ELCET 90 (96)
T ss_dssp CCCCC
T ss_pred ceeEe
Confidence 65543
No 150
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.54 E-value=8.4e-15 Score=128.70 Aligned_cols=77 Identities=21% Similarity=0.362 Sum_probs=70.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEE--EEEecC------CCceEEeeCCHHHHHHHHHHhCCc----cccCce
Q psy93 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQE--LFINKE------KMFGFIRMDYKHNADKAKAKLDGH----VLKGRS 178 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~--v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~----~l~g~~ 178 (503)
...++|||+|||+++|+++|+++|+.||.|.. |+|+++ +|||||+|.+. +|.+||..||+. .|.|++
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 35679999999999999999999999999976 888643 69999999999 999999999999 999999
Q ss_pred EEEEeccccc
Q psy93 179 LKIRFAPINA 188 (503)
Q Consensus 179 l~V~~a~~~~ 188 (503)
|.|.++.+..
T Consensus 100 l~V~~a~~~~ 109 (131)
T 2m2b_A 100 INVEFAKGSK 109 (131)
T ss_dssp CCCEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999997643
No 151
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.1e-14 Score=124.90 Aligned_cols=75 Identities=13% Similarity=0.186 Sum_probs=68.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCe-EEEEEec-----CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGET-QELFINK-----EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V-~~v~i~~-----~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
..++|||+|||+++|+++|+++|+.||.| ..|.|+. ++|||||+|.+.++|.+||.. |+..|.|+.|.|.++.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~ 92 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVT 92 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEEC
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECC
Confidence 45789999999999999999999999999 8888864 579999999999999999987 9999999999999986
Q ss_pred cc
Q psy93 186 IN 187 (503)
Q Consensus 186 ~~ 187 (503)
+.
T Consensus 93 ~~ 94 (114)
T 2cpy_A 93 LE 94 (114)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 152
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1.5e-14 Score=119.34 Aligned_cols=74 Identities=16% Similarity=0.324 Sum_probs=66.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCC-ceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-FGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI 186 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg-~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~ 186 (503)
..++|||+|||+++|+++|+++|+.||.|.+|.+.+..+ ||||+|.+.++|.+||. ||+..|.|+.|.|.++.+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 457899999999999999999999999999984443322 99999999999999999 999999999999998864
No 153
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.53 E-value=8.4e-15 Score=129.57 Aligned_cols=76 Identities=26% Similarity=0.545 Sum_probs=70.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec------CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINK------EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~------~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
..++|||+|||+++|+++|+++|+.||.|..|.|+. +++||||+|.+.++|.+||..||+..|.|++|+|.|+.
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 125 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 125 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 356899999999999999999999999999999964 36899999999999999999999999999999999997
Q ss_pred cc
Q psy93 186 IN 187 (503)
Q Consensus 186 ~~ 187 (503)
+.
T Consensus 126 ~~ 127 (135)
T 2lea_A 126 YG 127 (135)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 154
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.53 E-value=6.3e-15 Score=121.24 Aligned_cols=82 Identities=12% Similarity=0.129 Sum_probs=73.6
Q ss_pred ccceeccCcccccCHHHHHHHhccCC-CeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 187 NAAIKVKNLTSCVTNELLELAFGVFG-DIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 187 ~~~L~V~nLp~~~tee~L~~~Fs~~G-~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
+++|||+|||.++|+++|+++|+.|| .|.+|.|++| .++.++|||||+|.+.++|.+|+..++++..+ .+++|.|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~---~gr~i~V 77 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNI---LGQKVSM 77 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEE---TTEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEE---CCEEEEE
Confidence 46899999999999999999999999 8999999988 57899999999999999999999988656656 7899999
Q ss_pred ecCCccc
Q psy93 265 EPLELTD 271 (503)
Q Consensus 265 ~~~~~~~ 271 (503)
.++.+..
T Consensus 78 ~~a~~~~ 84 (91)
T 2lxi_A 78 HYSDPKP 84 (91)
T ss_dssp ECCCSCC
T ss_pred EEcCCCC
Confidence 9986653
No 155
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=6.2e-15 Score=124.14 Aligned_cols=75 Identities=23% Similarity=0.431 Sum_probs=69.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
..++|||+|||+++++++|+++|+.||+|..|.|+.+ ++||||+|.+.++|.+||.. ++..|.|+.|.|.++.
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~ 93 (105)
T 2dh8_A 15 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCT 93 (105)
T ss_dssp SSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEcc
Confidence 4578999999999999999999999999999999764 47999999999999999998 9999999999999986
Q ss_pred cc
Q psy93 186 IN 187 (503)
Q Consensus 186 ~~ 187 (503)
+.
T Consensus 94 ~~ 95 (105)
T 2dh8_A 94 PR 95 (105)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 156
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.8e-14 Score=120.21 Aligned_cols=75 Identities=15% Similarity=0.161 Sum_probs=67.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEE-EEEec-----CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQE-LFINK-----EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~-v~i~~-----~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
..++|||+|||+++|+++|+++|+.||.|.. |.|+. ++|||||+|.+.++|.+||.. |+..|.++.|.|.++.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~ 92 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSS 92 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECC
Confidence 4578999999999999999999999999987 77753 479999999999999999997 9999999999999886
Q ss_pred cc
Q psy93 186 IN 187 (503)
Q Consensus 186 ~~ 187 (503)
+.
T Consensus 93 ~~ 94 (104)
T 1wg5_A 93 RA 94 (104)
T ss_dssp TT
T ss_pred HH
Confidence 54
No 157
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.53 E-value=4.6e-15 Score=156.16 Aligned_cols=82 Identities=18% Similarity=0.250 Sum_probs=74.5
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
+.++|||+|||..+|+++|.++|+.||.|..|.|+.+ .++.+++||||+|.+.++|.+||..|| +..| .+++|.|
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ln-g~~i---~gr~i~V 176 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHAD-GKKI---DGRRVLV 176 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcC-CCEE---CCEEEEE
Confidence 4579999999999999999999999999999999988 588899999999999999999999997 6666 6899999
Q ss_pred ecCCccc
Q psy93 265 EPLELTD 271 (503)
Q Consensus 265 ~~~~~~~ 271 (503)
.++....
T Consensus 177 ~~a~~~~ 183 (437)
T 3pgw_S 177 DVERGRT 183 (437)
T ss_pred EEeCCCC
Confidence 9987643
No 158
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.52 E-value=2.9e-14 Score=128.95 Aligned_cols=77 Identities=26% Similarity=0.538 Sum_probs=71.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec------CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEec
Q psy93 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINK------EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~------~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a 184 (503)
...++|||+|||+++|+++|+++|+.||.|..|.|+. ++|||||+|.+.++|.+||..||+..|.|++|.|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4568999999999999999999999999999999975 3689999999999999999999999999999999999
Q ss_pred ccc
Q psy93 185 PIN 187 (503)
Q Consensus 185 ~~~ 187 (503)
.+.
T Consensus 148 ~~~ 150 (158)
T 2kn4_A 148 RYG 150 (158)
T ss_dssp CCS
T ss_pred CCC
Confidence 754
No 159
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.52 E-value=3.4e-15 Score=122.01 Aligned_cols=74 Identities=28% Similarity=0.472 Sum_probs=66.6
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecccc
Q psy93 114 CRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPIN 187 (503)
Q Consensus 114 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~~ 187 (503)
++|||+|||.++++++|+++|+.||+|.+|.|+.+ ++||||+|.+.+ |.+|+..||+..+.|++|+|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 57999999999999999999999999999999743 789999999999 99999999999999999999999764
Q ss_pred c
Q psy93 188 A 188 (503)
Q Consensus 188 ~ 188 (503)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 160
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.52 E-value=4.9e-14 Score=120.18 Aligned_cols=83 Identities=10% Similarity=0.035 Sum_probs=75.0
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEE
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVI 263 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~-~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~ 263 (503)
++.++|||+|||..+++++|+++|++||.|.+|.|+.|. ++.++|||||+|.+.++|.+|+..|| +..+ .+++|.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~ln-g~~~---~gr~i~ 79 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLH-LTSV---MGNIIH 79 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-TCEE---TTEECE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhC-CCEE---CCeEEE
Confidence 457899999999999999999999999999999999984 69999999999999999999999997 6666 699999
Q ss_pred eecCCccc
Q psy93 264 VEPLELTD 271 (503)
Q Consensus 264 V~~~~~~~ 271 (503)
|.++....
T Consensus 80 V~~a~~~~ 87 (110)
T 3s8s_A 80 AQLDIKGQ 87 (110)
T ss_dssp EEECSTTH
T ss_pred EEECCCCc
Confidence 99876543
No 161
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.52 E-value=3.1e-14 Score=129.29 Aligned_cols=76 Identities=18% Similarity=0.328 Sum_probs=69.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec--CCCceEEeeCCHHHHHHHHHHhCCccccC--ceEEEEeccccc
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINK--EKMFGFIRMDYKHNADKAKAKLDGHVLKG--RSLKIRFAPINA 188 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~--~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g--~~l~V~~a~~~~ 188 (503)
..+|||+|||+.+|+++|+++|++||.|.+|.|.. +++||||+|.+.++|.+|++.|||..|.+ ++|+|.|+.+..
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 46799999999999999999999999999999863 36799999999999999999999999976 999999998753
No 162
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=4.1e-14 Score=118.60 Aligned_cols=74 Identities=24% Similarity=0.400 Sum_probs=67.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
..++|||+|||+++++++|+++|+.||+|..|.|+.+ ++||||+|.+.++|.+||. ++..|.|+.|.|.++.
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a~ 91 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLPN 91 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECCC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEecC
Confidence 4578999999999999999999999999999999754 5799999999999999998 4779999999999987
Q ss_pred cc
Q psy93 186 IN 187 (503)
Q Consensus 186 ~~ 187 (503)
+.
T Consensus 92 ~~ 93 (103)
T 2cqg_A 92 SK 93 (103)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 163
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=3e-14 Score=119.17 Aligned_cols=77 Identities=19% Similarity=0.333 Sum_probs=65.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEe---cCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecccc
Q psy93 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN---KEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPIN 187 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~---~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~~ 187 (503)
...++|||+|||+++|+++|+++|+.|+.|.-+... ++++||||+|.+.++|.+||..||+..|.|+.|.|.|+.+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 92 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCC
Confidence 356789999999999999999999988543332221 22589999999999999999999999999999999999764
No 164
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.51 E-value=9.9e-15 Score=120.74 Aligned_cols=77 Identities=22% Similarity=0.313 Sum_probs=68.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEE-ecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecccc
Q psy93 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-NKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPIN 187 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i-~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~~ 187 (503)
...++|||+|||+++|+++|+++|+.||.|..+.. .+++|||||+|.+.++|.+|+..|++..|.|++|.|.++.+.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 35689999999999999999999999999987722 234789999999999999999999999999999999998653
No 165
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.4e-14 Score=120.38 Aligned_cols=72 Identities=18% Similarity=0.184 Sum_probs=65.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC-----CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI 186 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~-----kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~ 186 (503)
.++|||+|||+++|+++|+++|+.||.| +|.|+.+ +|||||+|.+.++|.+||. +|+..|.++.|.|.++.+
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~~ 91 (102)
T 1wez_A 15 GHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNST 91 (102)
T ss_dssp SCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCC
Confidence 4689999999999999999999999955 8888643 6899999999999999995 799999999999988754
No 166
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=9.2e-15 Score=127.13 Aligned_cols=75 Identities=15% Similarity=0.239 Sum_probs=66.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEE-Ee-----cCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELF-IN-----KEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~-i~-----~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
..++|||+|||+++|+++|+++|+.||.|..+. |. +++|||||+|.+.++|.+||. ||+..|.|+.|.|.++.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 457899999999999999999999999997633 32 247899999999999999999 99999999999999986
Q ss_pred cc
Q psy93 186 IN 187 (503)
Q Consensus 186 ~~ 187 (503)
+.
T Consensus 103 ~~ 104 (124)
T 1wel_A 103 KK 104 (124)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 167
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.50 E-value=8.1e-15 Score=129.69 Aligned_cols=117 Identities=19% Similarity=0.197 Sum_probs=74.5
Q ss_pred CceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc------cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-
Q psy93 150 MFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP------INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD- 222 (503)
Q Consensus 150 g~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~------~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d- 222 (503)
.++|++|.+...+..|+..+++....++. .+.+.. +.++|||+|||..+++++|+++|+.||.|..|.|+.+
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~ 83 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDR 83 (135)
T ss_dssp -------------------------------CCSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCS
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCC-CCCcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC
Confidence 37889999999999999999887665543 122222 3568999999999999999999999999999999888
Q ss_pred CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeecCCccc
Q psy93 223 ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTD 271 (503)
Q Consensus 223 ~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~~~~~~ 271 (503)
.++.+++||||+|.+.++|.+|+..|| +..+ .+++|.|.++....
T Consensus 84 ~~g~~~G~afV~F~~~~~A~~Ai~~l~-g~~i---~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 84 YTKESRGFAFVRFHDKRDAEDAMDAMD-GAVL---DGRELRVQMARYGR 128 (135)
T ss_dssp SSSSCCSCCEEECSCHHHHHHHHTTTT-TCCS---SSSCCEEEECCCCC
T ss_pred CCCccceEEEEEECCHHHHHHHHHHcC-CCEE---CCEEEEEEECCCCC
Confidence 478899999999999999999999997 5555 58999999987653
No 168
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.50 E-value=2.1e-14 Score=123.92 Aligned_cols=74 Identities=8% Similarity=0.067 Sum_probs=67.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCC---eEEEEEec-----CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEe
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGE---TQELFINK-----EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRF 183 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~---V~~v~i~~-----~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~ 183 (503)
..++|||+|||+++|+++|+++|+.||. |..|.|+. ++|||||+|.+.++|.+||. ||+..|.|+.|.|.+
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 94 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFK 94 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEE
Confidence 4578999999999999999999999999 88898864 36899999999999999999 999999999999998
Q ss_pred ccc
Q psy93 184 API 186 (503)
Q Consensus 184 a~~ 186 (503)
+..
T Consensus 95 a~~ 97 (118)
T 2db1_A 95 SHR 97 (118)
T ss_dssp ECH
T ss_pred CCH
Confidence 754
No 169
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.50 E-value=5.3e-14 Score=117.52 Aligned_cols=75 Identities=15% Similarity=0.301 Sum_probs=66.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEE-----EEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQE-----LFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI 186 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~-----v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~ 186 (503)
..++|||+|||+++|+++|+++|+.||.|.. ....++++||||+|.+.++|.+||+ ||+..|.|+.|.|.++.+
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~ 94 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKG 94 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCC
Confidence 4679999999999999999999999997765 2223568999999999999999998 999999999999999865
Q ss_pred c
Q psy93 187 N 187 (503)
Q Consensus 187 ~ 187 (503)
.
T Consensus 95 ~ 95 (101)
T 1fj7_A 95 R 95 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 170
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.50 E-value=2.2e-14 Score=126.98 Aligned_cols=74 Identities=8% Similarity=0.064 Sum_probs=67.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCC---eEEEEEec-----CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEe
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGE---TQELFINK-----EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRF 183 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~---V~~v~i~~-----~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~ 183 (503)
..++|||+|||+++|+++|+++|+.||. |.+|.|+. ++|||||+|.+.++|.+||+ ||+..|.|+.|.|.+
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~ 121 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFK 121 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEE
Confidence 3578999999999999999999999999 88888864 36899999999999999999 999999999999998
Q ss_pred ccc
Q psy93 184 API 186 (503)
Q Consensus 184 a~~ 186 (503)
+.+
T Consensus 122 a~~ 124 (136)
T 2hgl_A 122 SHR 124 (136)
T ss_dssp CCH
T ss_pred CCh
Confidence 754
No 171
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.49 E-value=1.9e-14 Score=138.77 Aligned_cols=76 Identities=20% Similarity=0.276 Sum_probs=69.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCC--CeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEe
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYG--ETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRF 183 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G--~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~ 183 (503)
..++|||+|||+++|+++|+++|+.|| .|++|.|+.+ +|||||+|.+.++|.+||..||++.|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 467899999999999999999999999 9999999754 68999999999999999999999999999999999
Q ss_pred cccc
Q psy93 184 APIN 187 (503)
Q Consensus 184 a~~~ 187 (503)
+.+.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8654
No 172
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.49 E-value=1.9e-14 Score=121.92 Aligned_cols=75 Identities=11% Similarity=0.084 Sum_probs=68.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCC---eEEEEEec-----CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEE
Q psy93 111 ANNCRLYLGNIGGDITENDIIELFKPYGE---TQELFINK-----EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIR 182 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~---V~~v~i~~-----~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~ 182 (503)
...++|||+|||+++|+++|+++|+.||. |..|.|+. ++|||||+|.+.++|.+||. +|+..|.|+.|.|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 35678999999999999999999999998 88998864 47899999999999999999 99999999999999
Q ss_pred eccc
Q psy93 183 FAPI 186 (503)
Q Consensus 183 ~a~~ 186 (503)
++.+
T Consensus 88 ~a~~ 91 (107)
T 2lmi_A 88 EINN 91 (107)
T ss_dssp ECCH
T ss_pred ECCH
Confidence 8864
No 173
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.49 E-value=1.4e-14 Score=114.05 Aligned_cols=69 Identities=23% Similarity=0.397 Sum_probs=63.9
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec------CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEec
Q psy93 115 RLYLGNIGGDITENDIIELFKPYGETQELFINK------EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184 (503)
Q Consensus 115 ~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~------~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a 184 (503)
+|||+|||+++|+++|+++|+.||+|..|.++. +++||||+|.+.++|.+|+.. ++..|.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 599999999999999999999999999999864 378999999999999999984 889999999999875
No 174
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.49 E-value=1.2e-13 Score=116.03 Aligned_cols=86 Identities=21% Similarity=0.244 Sum_probs=75.8
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEee
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVE 265 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~ 265 (503)
+.++|||+|||..+++++|+++|+.||.|..|.|+.+.++.+++||||+|.+.++|.+|+..|| +..+.....++|.|.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~-g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALH-GSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHS-SCCCCTTCSSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHc-CCccCCCCCccEEEE
Confidence 4689999999999999999999999999999999999889999999999999999999999997 555532223899999
Q ss_pred cCCcccc
Q psy93 266 PLELTDE 272 (503)
Q Consensus 266 ~~~~~~~ 272 (503)
++.....
T Consensus 93 ~a~~~~~ 99 (105)
T 2dnh_A 93 FADTDKE 99 (105)
T ss_dssp ESCSSCC
T ss_pred ECccCcc
Confidence 9877644
No 175
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.49 E-value=2.4e-14 Score=118.81 Aligned_cols=83 Identities=13% Similarity=0.107 Sum_probs=71.0
Q ss_pred ccceeccCcccccCHHHHHHHhccCCC--eeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEE
Q psy93 187 NAAIKVKNLTSCVTNELLELAFGVFGD--IERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVI 263 (503)
Q Consensus 187 ~~~L~V~nLp~~~tee~L~~~Fs~~G~--V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~ 263 (503)
-.+|||+|||+.+|+++|+++|++||. |.+|.+++| .++.++|||||+|.+.++|.+|+..||+....+...+++|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 368999999999999999999999995 678888888 57899999999999999999999999854322223799999
Q ss_pred eecCCc
Q psy93 264 VEPLEL 269 (503)
Q Consensus 264 V~~~~~ 269 (503)
|.+++.
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 998753
No 176
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.49 E-value=1.9e-14 Score=128.14 Aligned_cols=77 Identities=27% Similarity=0.482 Sum_probs=68.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEE--------EEE---ecCCCceEEeeCCHHHHHHHHHHhCCccccCceE
Q psy93 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQE--------LFI---NKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSL 179 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~--------v~i---~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l 179 (503)
.++++|||+|||+++|+++|+++|+.||.|.. |.+ .+++|||||+|.+.++|.+||..||+..|.|++|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 35689999999999999999999999999876 333 2468999999999999999999999999999999
Q ss_pred EEEecccc
Q psy93 180 KIRFAPIN 187 (503)
Q Consensus 180 ~V~~a~~~ 187 (503)
.|.++.+.
T Consensus 123 ~V~~a~~~ 130 (143)
T 3egn_A 123 VVQFARSA 130 (143)
T ss_dssp EEEECCCS
T ss_pred EEEECCCC
Confidence 99999653
No 177
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.48 E-value=7.7e-14 Score=114.23 Aligned_cols=72 Identities=28% Similarity=0.510 Sum_probs=61.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec-CCCceEEeeCCHHHHHHHHHHhCCcc--ccCceEEEEecccc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINK-EKMFGFIRMDYKHNADKAKAKLDGHV--LKGRSLKIRFAPIN 187 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~-~kg~aFV~F~~~e~A~~Ai~~l~g~~--l~g~~l~V~~a~~~ 187 (503)
..++|||+|||+++|+++|+++|++||+|.+|.|+. ++|||||+|.+.++|.+ |++.. +.++.|.|.++.+.
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEPK 84 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC--
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCCC
Confidence 457899999999999999999999999999999986 58999999999999984 45554 45899999998654
No 178
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.48 E-value=9.1e-14 Score=119.26 Aligned_cols=81 Identities=32% Similarity=0.471 Sum_probs=72.3
Q ss_pred ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeec
Q psy93 187 NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEP 266 (503)
Q Consensus 187 ~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~ 266 (503)
.++|||+|||..+++++|+++|+.||.|.+|+|+.+. +.+++||||+|.+.++|.+|+..|+ +..+ .+++|.|.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~-~~~kg~afV~f~~~~~A~~Ai~~l~-~~~~---~g~~i~V~~ 79 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMN-GMLL---NDRKVFVGR 79 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESCHHHHHHHHHHHT-TCEE---TTEECEEEE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC-CCCCceEEEEECCHHHHHHHHHHcC-CCEE---CCEEEEEEE
Confidence 4689999999999999999999999999999999885 4479999999999999999999997 6666 689999998
Q ss_pred CCcccc
Q psy93 267 LELTDE 272 (503)
Q Consensus 267 ~~~~~~ 272 (503)
+.....
T Consensus 80 a~~~~~ 85 (115)
T 4f25_A 80 FKSRKE 85 (115)
T ss_dssp SSCCCC
T ss_pred CCCccc
Confidence 876543
No 179
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.22 E-value=3.1e-15 Score=128.48 Aligned_cols=77 Identities=21% Similarity=0.385 Sum_probs=70.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEE--------EEEecC------CCceEEeeCCHHHHHHHHHHhCCccccC
Q psy93 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQE--------LFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKG 176 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~--------v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g 176 (503)
.+.++|||+|||+++++++|+++|+.||.|.. |.|+.+ ++||||+|.+.++|.+||..||+..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 35678999999999999999999999999998 777543 6899999999999999999999999999
Q ss_pred ceEEEEecccc
Q psy93 177 RSLKIRFAPIN 187 (503)
Q Consensus 177 ~~l~V~~a~~~ 187 (503)
++|.|.++.+.
T Consensus 85 ~~l~V~~a~~~ 95 (116)
T 2lcw_A 85 NPIKVSFATRR 95 (116)
Confidence 99999998653
No 180
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=3.6e-14 Score=115.50 Aligned_cols=74 Identities=27% Similarity=0.540 Sum_probs=63.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC-CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecccc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPIN 187 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~-kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~~ 187 (503)
.+++|||+|||+++|+++|+++|+.||+|.+|.|+++ ++||||+|.+.++|++|+.. ...+.+++|.|.++.+.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPK 78 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCC
Confidence 4679999999999999999999999999999999754 89999999999999865321 33558999999998764
No 181
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.48 E-value=8.7e-14 Score=127.10 Aligned_cols=113 Identities=16% Similarity=0.183 Sum_probs=73.1
Q ss_pred EeeCCHHHHHHHHHHhCCcccc--CceEEEEec--------------------------ccccceeccCcccccCHHHHH
Q psy93 154 IRMDYKHNADKAKAKLDGHVLK--GRSLKIRFA--------------------------PINAAIKVKNLTSCVTNELLE 205 (503)
Q Consensus 154 V~F~~~e~A~~Ai~~l~g~~l~--g~~l~V~~a--------------------------~~~~~L~V~nLp~~~tee~L~ 205 (503)
.+|++.++|..|+..|++.... |+.+.+.++ .+.++|||.|||..+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6788888888888888877555 444444321 124579999999999999999
Q ss_pred HHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeecCCcc
Q psy93 206 LAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELT 270 (503)
Q Consensus 206 ~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~~~~~ 270 (503)
++|+.||.|..|.|+.+ .++.+++||||+|.+.++|.+||..|| +..+ .+++|.|.++...
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~-g~~~---~g~~l~V~~a~~~ 152 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALN-GAEI---MGQTIQVDWCFVK 152 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHT-TCEE---TTEECEEEESEEC
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhC-CCEE---CCEEEEEEEecCC
Confidence 99999999999999998 588999999999999999999999997 6555 6899999997654
No 182
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=2.3e-13 Score=113.39 Aligned_cols=83 Identities=18% Similarity=0.184 Sum_probs=75.8
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
.+.++|||.|||..+++++|+++|+.||.|..|.|+.+.++.+++||||+|.+.++|.+|+..|| +..+ .+++|.|
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-g~~~---~g~~l~v 90 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMD-GMTI---KENIIKV 90 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT-TEES---SSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhC-CCEE---CCEEEEE
Confidence 45689999999999999999999999999999999999889999999999999999999999997 6665 6899999
Q ss_pred ecCCccc
Q psy93 265 EPLELTD 271 (503)
Q Consensus 265 ~~~~~~~ 271 (503)
.++.+..
T Consensus 91 ~~a~~~~ 97 (100)
T 2do4_A 91 AISNSGP 97 (100)
T ss_dssp EECCCCS
T ss_pred EECCCCC
Confidence 9987653
No 183
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=8.8e-14 Score=118.41 Aligned_cols=72 Identities=14% Similarity=0.171 Sum_probs=66.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec-----CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINK-----EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI 186 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~-----~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~ 186 (503)
.++|||+|||+++|+++|+++|+.| .|..|.|+. ++|||||+|.+.++|.+|| .+|+..|.|+.|.|..+.+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 4689999999999999999999999 899999964 4799999999999999999 6999999999999988754
No 184
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.47 E-value=2.3e-13 Score=109.06 Aligned_cols=80 Identities=25% Similarity=0.276 Sum_probs=73.1
Q ss_pred ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEee
Q psy93 187 NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVE 265 (503)
Q Consensus 187 ~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~ 265 (503)
+.+|||+|||..+++++|+++|+.||.|..+.++.+ .++.+++||||+|.+.++|.+|+..|| +..+ .+++|.|.
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~-g~~~---~g~~l~v~ 76 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQ-GQDL---NGRPLRIN 76 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHT-TCEE---TTEECEEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhc-CCee---CCcEEEEE
Confidence 358999999999999999999999999999999988 688999999999999999999999997 6666 68999999
Q ss_pred cCCcc
Q psy93 266 PLELT 270 (503)
Q Consensus 266 ~~~~~ 270 (503)
++.+.
T Consensus 77 ~a~~~ 81 (83)
T 3md1_A 77 WAAKL 81 (83)
T ss_dssp ECCCC
T ss_pred ecCcC
Confidence 98765
No 185
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=2.1e-13 Score=114.30 Aligned_cols=82 Identities=30% Similarity=0.426 Sum_probs=75.1
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEee
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVE 265 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~ 265 (503)
+.++|||.|||..+++++|+++|+.||.|..|.|+.+ ++.+++||||+|.+.++|.+|+..|| +..+ .+++|.|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~-g~~~---~g~~l~V~ 88 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN-GRIV---ATKPLYVA 88 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHT-TCBS---SSSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhC-CCEe---CCcEEEEE
Confidence 5689999999999999999999999999999999998 88999999999999999999999997 5555 68999999
Q ss_pred cCCcccc
Q psy93 266 PLELTDE 272 (503)
Q Consensus 266 ~~~~~~~ 272 (503)
++.....
T Consensus 89 ~a~~~~~ 95 (103)
T 2d9p_A 89 LAQRKEE 95 (103)
T ss_dssp ECSSCCC
T ss_pred Eeccccc
Confidence 9877654
No 186
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.46 E-value=6.4e-14 Score=135.25 Aligned_cols=77 Identities=29% Similarity=0.531 Sum_probs=71.6
Q ss_pred CCCcEEEEcCCCCCC---------CHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccc-------
Q psy93 111 ANNCRLYLGNIGGDI---------TENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVL------- 174 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~---------te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l------- 174 (503)
..+++|||+|||..+ ++++|+++|++||+|.+|.|+.+++||||+|.+.++|+.|++.|++..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e 211 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKE 211 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEecccccc
Confidence 356899999999998 7999999999999999999999999999999999999999999999999
Q ss_pred -----cCceEEEEecccc
Q psy93 175 -----KGRSLKIRFAPIN 187 (503)
Q Consensus 175 -----~g~~l~V~~a~~~ 187 (503)
.|+.|.|.||...
T Consensus 212 ~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 212 WDDRREGTGLLVKWANED 229 (240)
T ss_dssp GGGGGGSCCCEEEECC--
T ss_pred ccccCCCCEEEEEEccCC
Confidence 8999999999754
No 187
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=2.1e-13 Score=113.27 Aligned_cols=84 Identities=24% Similarity=0.273 Sum_probs=76.0
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEE
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVI 263 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~-~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~ 263 (503)
.+.++|||.|||..+++++|+++|+.||.|..|.|+.+. ++.+++||||+|.+.++|.+|+..|| +..+ .+++|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~---~g~~l~ 81 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVD-GQVF---QGRMLH 81 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTT-TEES---SSCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhC-CCEE---CCcEEE
Confidence 356799999999999999999999999999999999885 88999999999999999999999997 6666 689999
Q ss_pred eecCCcccc
Q psy93 264 VEPLELTDE 272 (503)
Q Consensus 264 V~~~~~~~~ 272 (503)
|.++.....
T Consensus 82 V~~a~~~~~ 90 (99)
T 1whw_A 82 VLPSTIKKE 90 (99)
T ss_dssp EEECCCCST
T ss_pred EEEcCCCcc
Confidence 999877654
No 188
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=2.6e-13 Score=111.81 Aligned_cols=84 Identities=25% Similarity=0.387 Sum_probs=75.4
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEE
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVI 263 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~ 263 (503)
.+.++|||.|||..+++++|+++|+.||.|..+.++.+ .++.+++||||+|.+.++|.+|+..|| +..+ .+++|.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~---~g~~l~ 78 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLN-GFEL---AGRPMR 78 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHT-TCCS---SSSCCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhC-CCee---CCcEEE
Confidence 45789999999999999999999999999999999988 468899999999999999999999997 5555 689999
Q ss_pred eecCCcccc
Q psy93 264 VEPLELTDE 272 (503)
Q Consensus 264 V~~~~~~~~ 272 (503)
|.++.....
T Consensus 79 V~~a~~~~~ 87 (95)
T 2dnz_A 79 VGHVTERLD 87 (95)
T ss_dssp EEESSCCCC
T ss_pred EEEcccccC
Confidence 999876644
No 189
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=9.5e-14 Score=120.76 Aligned_cols=73 Identities=11% Similarity=0.139 Sum_probs=64.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCe----EEEEEec-----CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEe
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPYGET----QELFINK-----EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRF 183 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~G~V----~~v~i~~-----~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~ 183 (503)
.++|||+|||+++|+++|+++|+.||+| ..|.|+. ++|||||+|.+.++|.+||.. |+..|.++.|.|..
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~ 101 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFR 101 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEE
Confidence 4689999999999999999999999976 5787764 368999999999999999986 99999999999987
Q ss_pred ccc
Q psy93 184 API 186 (503)
Q Consensus 184 a~~ 186 (503)
+.+
T Consensus 102 a~~ 104 (123)
T 2dha_A 102 STA 104 (123)
T ss_dssp ECH
T ss_pred CCH
Confidence 643
No 190
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.45 E-value=2.4e-13 Score=112.02 Aligned_cols=80 Identities=24% Similarity=0.276 Sum_probs=73.3
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
.+.++|||.|||..+++++|+++|+.||.|..|.|+.+.++.+++||||+|.+.++|.+|+..|| +..+ .+++|.|
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-g~~~---~g~~l~V 89 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN-GIRL---YGRPINV 89 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHT-TCEE---TTEECEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhC-CCEE---CCCEEEE
Confidence 45689999999999999999999999999999999999889999999999999999999999997 6555 5899999
Q ss_pred ecCC
Q psy93 265 EPLE 268 (503)
Q Consensus 265 ~~~~ 268 (503)
.++.
T Consensus 90 ~~a~ 93 (95)
T 2ywk_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred EEcC
Confidence 8864
No 191
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.45 E-value=2.9e-13 Score=115.79 Aligned_cols=83 Identities=22% Similarity=0.315 Sum_probs=75.4
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~-~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
+.++|||.|||..+++++|+++|+.||.|..|.|+.+. ++.+++||||+|.+.++|.+|+..|| +..+ .+++|.|
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-g~~~---~g~~l~V 99 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMN-GFQI---GMKRLKV 99 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHT-TCEE---TTEECEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcC-CCEE---CCEEEEE
Confidence 46799999999999999999999999999999999985 88999999999999999999999997 6655 6899999
Q ss_pred ecCCcccc
Q psy93 265 EPLELTDE 272 (503)
Q Consensus 265 ~~~~~~~~ 272 (503)
.++.+...
T Consensus 100 ~~a~~~~~ 107 (115)
T 2cpz_A 100 QLKRSKND 107 (115)
T ss_dssp ECCCCSCC
T ss_pred EEcCCCCc
Confidence 99876644
No 192
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=4.9e-13 Score=114.03 Aligned_cols=83 Identities=28% Similarity=0.300 Sum_probs=75.4
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
.+.++|||.|||..+++++|+++|+.||.|..|.|+.+.++.+++||||+|.+.++|.+|+..|| +..+ .+++|.|
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-g~~~---~g~~l~v 88 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN-GQLL---FDRPMHV 88 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHT-TCEE---TTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhC-CCEe---CCCEEEE
Confidence 45789999999999999999999999999999999999889999999999999999999999997 6666 6899999
Q ss_pred ecCCccc
Q psy93 265 EPLELTD 271 (503)
Q Consensus 265 ~~~~~~~ 271 (503)
.++....
T Consensus 89 ~~a~~~~ 95 (114)
T 2do0_A 89 KMDERAL 95 (114)
T ss_dssp EECSCCC
T ss_pred EEcccCC
Confidence 9876543
No 193
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.45 E-value=2.6e-13 Score=109.84 Aligned_cols=81 Identities=27% Similarity=0.329 Sum_probs=72.0
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEE
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVI 263 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~ 263 (503)
.+.++|||+|||..+++++|+++|+.||.|.++.++.+ .++.+++||||+|.+.++|.+|+..|| +..+ .+++|.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-g~~~---~g~~l~ 79 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG-GQWL---GGRQIR 79 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-TCEE---TTEECE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC-CCEE---CCeEEE
Confidence 35678999999999999999999999999999999998 588999999999999999999999997 5655 689999
Q ss_pred eecCCc
Q psy93 264 VEPLEL 269 (503)
Q Consensus 264 V~~~~~ 269 (503)
|.++.+
T Consensus 80 v~~a~~ 85 (87)
T 3bs9_A 80 TNWATR 85 (87)
T ss_dssp EEEEC-
T ss_pred EEecCC
Confidence 988754
No 194
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=2.1e-13 Score=113.96 Aligned_cols=84 Identities=24% Similarity=0.234 Sum_probs=76.2
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEE
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVI 263 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~ 263 (503)
.+.++|||.|||..+++++|+++|+.||.|..|.|+.+ .++.+++||||+|.+.++|.+|+..|| +..+ .+++|.
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-g~~~---~g~~l~ 85 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN-ESEL---FGRTIR 85 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHT-TEEE---TTEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhC-CCEE---CCcEEE
Confidence 45789999999999999999999999999999999888 578899999999999999999999997 7666 699999
Q ss_pred eecCCcccc
Q psy93 264 VEPLELTDE 272 (503)
Q Consensus 264 V~~~~~~~~ 272 (503)
|.++.+...
T Consensus 86 V~~a~~~~~ 94 (102)
T 2cqb_A 86 VNLAKPMRI 94 (102)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999876644
No 195
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.45 E-value=1.4e-13 Score=144.91 Aligned_cols=77 Identities=18% Similarity=0.341 Sum_probs=71.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEec
Q psy93 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a 184 (503)
...++|||+|||++||+++|.++|+.||.|+.|.|+.+ +|||||+|.+.++|.+||..||++.|.|++|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34679999999999999999999999999999999743 789999999999999999999999999999999999
Q ss_pred ccc
Q psy93 185 PIN 187 (503)
Q Consensus 185 ~~~ 187 (503)
.+.
T Consensus 180 ~~~ 182 (437)
T 3pgw_S 180 RGR 182 (437)
T ss_pred CCC
Confidence 754
No 196
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=2.3e-13 Score=116.49 Aligned_cols=71 Identities=15% Similarity=0.263 Sum_probs=60.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEe---------cCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEE
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFIN---------KEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIR 182 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~---------~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~ 182 (503)
..++|||+|||+++|+++|+++|++||+|. +.++ +++|||||+|.+.++|.+||+.|+ .++|+.|.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 457899999999999999999999999999 6664 347899999999999999999984 3667776666
Q ss_pred ecc
Q psy93 183 FAP 185 (503)
Q Consensus 183 ~a~ 185 (503)
.+.
T Consensus 84 ~~~ 86 (114)
T 2dnl_A 84 SSP 86 (114)
T ss_dssp CCS
T ss_pred cCC
Confidence 554
No 197
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=4.5e-13 Score=110.27 Aligned_cols=80 Identities=23% Similarity=0.238 Sum_probs=72.9
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEE
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVI 263 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~ 263 (503)
++.++|||.|||..+++++|+++|+.||.|..|.++.+ .++.+++||||+|.+.++|.+|+..|| +..+ .+++|.
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-g~~~---~g~~l~ 88 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN-GMEL---DGRRIR 88 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHT-TEEE---TTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhC-CCEE---CCEEEE
Confidence 45789999999999999999999999999999999988 467899999999999999999999997 6666 689999
Q ss_pred eecCC
Q psy93 264 VEPLE 268 (503)
Q Consensus 264 V~~~~ 268 (503)
|.++.
T Consensus 89 v~~a~ 93 (95)
T 2cqc_A 89 VSGPS 93 (95)
T ss_dssp EECCS
T ss_pred EEecC
Confidence 99875
No 198
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2e-13 Score=112.69 Aligned_cols=84 Identities=27% Similarity=0.373 Sum_probs=75.7
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeee-EEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeE
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERA-IVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPV 262 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~-~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl 262 (503)
.+.++|||.|||..+++++|+++|+.||.|..+ .|+.+ .++.+++||||+|.+.++|.+|+..|| +..+ .+++|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~-g~~~---~g~~l 78 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMN-GQYL---CNRPI 78 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTT-TCEE---TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcC-CCEE---CCEEE
Confidence 356899999999999999999999999999999 99988 688899999999999999999999997 6655 68999
Q ss_pred EeecCCcccc
Q psy93 263 IVEPLELTDE 272 (503)
Q Consensus 263 ~V~~~~~~~~ 272 (503)
.|.++.+...
T Consensus 79 ~v~~a~~~~~ 88 (96)
T 1x5t_A 79 TVSYAFKKDS 88 (96)
T ss_dssp EEEESCCCCC
T ss_pred EEEEecccCC
Confidence 9999876643
No 199
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.44 E-value=5.2e-14 Score=125.07 Aligned_cols=73 Identities=16% Similarity=0.169 Sum_probs=66.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec-----CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecccc
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINK-----EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPIN 187 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~-----~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~~ 187 (503)
.++|||+|||+++|+++|+++|+.|| |++|.|+. ++|||||+|.+.++|++|| .+|+..|.++.|.|.++.+.
T Consensus 46 ~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~ 123 (139)
T 2hgn_A 46 GHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTT 123 (139)
T ss_dssp CCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCC
Confidence 45799999999999999999999999 66898864 4789999999999999999 78999999999999887653
No 200
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=3.3e-13 Score=113.08 Aligned_cols=84 Identities=29% Similarity=0.329 Sum_probs=75.5
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEE
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVI 263 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~ 263 (503)
.+.++|||.|||..+++++|+++|+.||.|..|.|+.+ .++.+++||||+|.+.++|.+|+..|| +..+ .+++|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-g~~~---~g~~l~ 88 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVS-GFGY---DHLILN 88 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTT-TCEE---TTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcC-CCee---CCcEEE
Confidence 34689999999999999999999999999999999998 588999999999999999999999997 6655 689999
Q ss_pred eecCCcccc
Q psy93 264 VEPLELTDE 272 (503)
Q Consensus 264 V~~~~~~~~ 272 (503)
|.++.+...
T Consensus 89 v~~a~~~~~ 97 (103)
T 2cq0_A 89 VEWAKPSTN 97 (103)
T ss_dssp EEESSCCCC
T ss_pred EEECCCCCC
Confidence 999876643
No 201
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.8e-13 Score=115.33 Aligned_cols=79 Identities=14% Similarity=0.165 Sum_probs=70.2
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhC-CeeeecCCCCeEE
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAE-GCFFLTQSLRPVI 263 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~-g~~~~~~~~rpl~ 263 (503)
.+.++|||+|||+.+++++|+++|++||.|.+|.|+++ ++||||+|++.++|.+|+..|+. +..+ .+++|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l---~Gr~l~ 85 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVL---RGQPIY 85 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEE---TTEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceE---CCEEEE
Confidence 45789999999999999999999999999999999876 79999999999999999999863 3555 689999
Q ss_pred eecCCccc
Q psy93 264 VEPLELTD 271 (503)
Q Consensus 264 V~~~~~~~ 271 (503)
|.++....
T Consensus 86 V~~A~~~~ 93 (105)
T 1sjq_A 86 IQFSNHKE 93 (105)
T ss_dssp BCCCSSSS
T ss_pred EEEcCCCC
Confidence 99986653
No 202
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=3.1e-13 Score=113.87 Aligned_cols=84 Identities=18% Similarity=0.249 Sum_probs=75.0
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCC--CCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEE
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE--RGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVI 263 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~--~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~ 263 (503)
+.++|||.|||..+++++|+++|+.||.|..|.|+.+. ++.+++||||+|.+.++|.+|+..|+++..+ .+++|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~---~g~~l~ 90 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL---YGRRLV 90 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBS---SSCBCE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeE---CCCEEE
Confidence 46899999999999999999999999999999998874 8889999999999999999999999436655 589999
Q ss_pred eecCCcccc
Q psy93 264 VEPLELTDE 272 (503)
Q Consensus 264 V~~~~~~~~ 272 (503)
|.++.....
T Consensus 91 v~~a~~~~~ 99 (107)
T 2cph_A 91 LEWADSEVT 99 (107)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999877644
No 203
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.44 E-value=2.2e-13 Score=109.69 Aligned_cols=80 Identities=25% Similarity=0.270 Sum_probs=72.6
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEE
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVI 263 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~ 263 (503)
.+.++|||+|||..+++++|+++|+.||.|..+.++.+ .++.+++||||+|.+.++|.+|+..|| +..+ .+++|.
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~---~g~~l~ 80 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN-ESEL---FGRTIR 80 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHT-TCEE---TTEECE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhC-CCEE---CCcEEE
Confidence 46789999999999999999999999999999999888 678889999999999999999999997 6666 689999
Q ss_pred eecCC
Q psy93 264 VEPLE 268 (503)
Q Consensus 264 V~~~~ 268 (503)
|.+++
T Consensus 81 v~~ak 85 (85)
T 3mdf_A 81 VNLAK 85 (85)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 98863
No 204
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.44 E-value=2.9e-13 Score=121.97 Aligned_cols=76 Identities=20% Similarity=0.462 Sum_probs=70.6
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEe
Q psy93 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRF 183 (503)
Q Consensus 110 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~ 183 (503)
....++|||+|||+++|+++|+++|+.||.|..+.+..+ +|||||+|.+.++|.+|+..||+..|.|++|.|.|
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 345679999999999999999999999999999999744 67999999999999999999999999999999999
Q ss_pred cc
Q psy93 184 AP 185 (503)
Q Consensus 184 a~ 185 (503)
+.
T Consensus 164 a~ 165 (166)
T 3md3_A 164 AA 165 (166)
T ss_dssp SC
T ss_pred cC
Confidence 85
No 205
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.43 E-value=1.6e-13 Score=112.31 Aligned_cols=80 Identities=21% Similarity=0.195 Sum_probs=68.0
Q ss_pred cceeccCcccccCHHHHHHHhccCC--CeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 188 AAIKVKNLTSCVTNELLELAFGVFG--DIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 188 ~~L~V~nLp~~~tee~L~~~Fs~~G--~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
.+|||+|||..+++++|+++|+.|| .|.++.++.+ .++.++|||||+|.+.++|.+|+..|| +..+ .++.|.|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~-g~~~---~gr~i~V 77 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLP-KREL---HGQNPVV 77 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGG-GSCS---SSCCCEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcC-CCee---CCEEEEE
Confidence 4799999999999999999999999 9999999998 589999999999999999999999998 5555 6899999
Q ss_pred ecCCccc
Q psy93 265 EPLELTD 271 (503)
Q Consensus 265 ~~~~~~~ 271 (503)
.++.+..
T Consensus 78 ~~~~~~~ 84 (90)
T 3p5t_L 78 TPSNKLE 84 (90)
T ss_dssp CCC----
T ss_pred EECCCCc
Confidence 8876653
No 206
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=3.2e-13 Score=113.25 Aligned_cols=84 Identities=24% Similarity=0.317 Sum_probs=75.3
Q ss_pred ccccceeccCcccccCHHHHHHHhcc-CCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCee-eecCCCCeE
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGV-FGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCF-FLTQSLRPV 262 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~-~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~-~~~~~~rpl 262 (503)
.+.++|||+|||..+++++|+++|+. ||.|..|.|+.+.++.+++||||+|.+.++|.+|+..|+ +.. + .+++|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-g~~~~---~g~~l 82 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQ-GAVGL---GSKPV 82 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTT-TCCSS---SSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHcc-CCccc---CCEeE
Confidence 35689999999999999999999999 999999999999899999999999999999999999997 554 4 58899
Q ss_pred EeecCCcccc
Q psy93 263 IVEPLELTDE 272 (503)
Q Consensus 263 ~V~~~~~~~~ 272 (503)
.|.++.....
T Consensus 83 ~v~~a~~~~~ 92 (104)
T 2dhg_A 83 RLSVAIPKAS 92 (104)
T ss_dssp CCCBCCCCCS
T ss_pred EEEEccCCCc
Confidence 9998866543
No 207
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.43 E-value=5.1e-14 Score=117.82 Aligned_cols=74 Identities=23% Similarity=0.367 Sum_probs=68.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec-----CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINK-----EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI 186 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~-----~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~ 186 (503)
..++|||+|||+++++++|+++|+.||.|..|.|+. ++|||||+|.+.++|.+|+. ++..|.|+.|.|.++.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 457899999999999999999999999999999976 36899999999999999998 99999999999998865
Q ss_pred c
Q psy93 187 N 187 (503)
Q Consensus 187 ~ 187 (503)
.
T Consensus 86 ~ 86 (102)
T 2xs2_A 86 K 86 (102)
T ss_dssp C
T ss_pred C
Confidence 4
No 208
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=4e-13 Score=111.38 Aligned_cols=84 Identities=23% Similarity=0.217 Sum_probs=74.2
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCC----CCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCC
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE----RGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLR 260 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~----~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~r 260 (503)
.+.++|||.|||..+++++|+++|+.||.|..|.|+.+. ++.+++||||+|.+.++|.+|+..|| +..+ .++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~-g~~~---~g~ 78 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQ-GHTV---DGH 78 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHST-TCEE---TTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhC-CCee---CCe
Confidence 456899999999999999999999999999999998874 34789999999999999999999997 6655 589
Q ss_pred eEEeecCCcccc
Q psy93 261 PVIVEPLELTDE 272 (503)
Q Consensus 261 pl~V~~~~~~~~ 272 (503)
+|.|.++.....
T Consensus 79 ~l~V~~a~~~~~ 90 (98)
T 2cpf_A 79 KLEVRISERATK 90 (98)
T ss_dssp ECEEECSSCSSC
T ss_pred EEEEEEccCCCC
Confidence 999999876643
No 209
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=5e-13 Score=111.09 Aligned_cols=83 Identities=20% Similarity=0.214 Sum_probs=74.0
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEE
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVI 263 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~ 263 (503)
.+.++|||.|||..+++++|+++|+.||.|..|.|+.+ .++.+++||||+|.+.++|.+|+. |+ +..+ .+++|.
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~-~~~~---~g~~l~ 82 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MH-FHDI---MGKKVE 82 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HC-CCBS---SSCBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hC-CCEE---CCeEEE
Confidence 35689999999999999999999999999999999988 478899999999999999999998 76 6655 689999
Q ss_pred eecCCcccc
Q psy93 264 VEPLELTDE 272 (503)
Q Consensus 264 V~~~~~~~~ 272 (503)
|.++.+...
T Consensus 83 V~~a~~~~~ 91 (99)
T 2dgs_A 83 VKRAEPRDS 91 (99)
T ss_dssp EEECCCCCC
T ss_pred EEECCCCcc
Confidence 999877644
No 210
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.43 E-value=8.5e-13 Score=112.78 Aligned_cols=83 Identities=28% Similarity=0.327 Sum_probs=75.2
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
+.++|||.|||..+++++|+++|+.||.|..|.|+.+ .++.+++||||+|.+.++|.+|+..|| +..+ .+++|.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~---~g~~l~V 89 (115)
T 2dgo_A 14 NHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG-GQWL---GGRQIRT 89 (115)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT-TCEE---TTEECEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhC-CCEE---CCEEEEE
Confidence 4678999999999999999999999999999999998 588999999999999999999999997 6655 6899999
Q ss_pred ecCCcccc
Q psy93 265 EPLELTDE 272 (503)
Q Consensus 265 ~~~~~~~~ 272 (503)
.++.....
T Consensus 90 ~~a~~~~~ 97 (115)
T 2dgo_A 90 NWATRKPP 97 (115)
T ss_dssp EESSCCCC
T ss_pred EEccCCCC
Confidence 99876643
No 211
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.43 E-value=2e-13 Score=129.73 Aligned_cols=75 Identities=17% Similarity=0.377 Sum_probs=70.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec----CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINK----EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI 186 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~----~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~ 186 (503)
..++|||+|||+++|+++|+++|+.||.|..|.|+. ++|||||+|.+.++|.+||+.||+..|.|++|.|.++.+
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 456899999999999999999999999999999975 378999999999999999999999999999999999865
No 212
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.43 E-value=4.1e-13 Score=115.42 Aligned_cols=84 Identities=18% Similarity=0.254 Sum_probs=75.9
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
.+.++|||+|||.++++++|+++|+.||.|..|.|+.+.++.+++||||+|.+.++|.+|+..|| +..+ .+++|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~-g~~~---~g~~l~V 80 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN-GKSL---HGKAIKV 80 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCS-SCBC---SSSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhC-CCEE---CCEEEEE
Confidence 35689999999999999999999999999999999999889999999999999999999999997 5555 6899999
Q ss_pred ecCCcccc
Q psy93 265 EPLELTDE 272 (503)
Q Consensus 265 ~~~~~~~~ 272 (503)
.++.....
T Consensus 81 ~~a~~~~~ 88 (116)
T 2fy1_A 81 EQAKKPSF 88 (116)
T ss_dssp EECCCSSC
T ss_pred EECCCCCC
Confidence 99876543
No 213
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.43 E-value=4.1e-13 Score=113.18 Aligned_cols=80 Identities=26% Similarity=0.378 Sum_probs=73.2
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
.+.++|||.|||..+++++|+++|+.||.|..|.|+.+.++.+++||||+|.+.++|.+|+..|| +..+ .+++|.|
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-g~~~---~g~~l~V 102 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYN-GVPL---DGRPMNI 102 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT-TCEE---TTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhC-CCEe---CCcEEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999997 6655 6889999
Q ss_pred ecCC
Q psy93 265 EPLE 268 (503)
Q Consensus 265 ~~~~ 268 (503)
.++.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 8753
No 214
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=7e-13 Score=111.01 Aligned_cols=82 Identities=27% Similarity=0.324 Sum_probs=73.4
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEee
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVE 265 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~ 265 (503)
+.++|||.|||..+++++|+++|+.||.|..|.|+.+... +++||||+|.+.++|.+|+..|| +..+ .+++|.|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~-g~~~---~g~~l~v~ 88 (103)
T 2cq3_A 14 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLH-GTVV---EGRKIEVN 88 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHT-TCEE---TTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhC-CCEE---CCEEEEEE
Confidence 4689999999999999999999999999999999988654 79999999999999999999997 6655 68999999
Q ss_pred cCCcccc
Q psy93 266 PLELTDE 272 (503)
Q Consensus 266 ~~~~~~~ 272 (503)
++.....
T Consensus 89 ~a~~~~~ 95 (103)
T 2cq3_A 89 NATARVM 95 (103)
T ss_dssp ECCSSCC
T ss_pred EcccCCC
Confidence 9876643
No 215
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=4.5e-13 Score=110.11 Aligned_cols=80 Identities=21% Similarity=0.244 Sum_probs=72.3
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEE
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVI 263 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~ 263 (503)
++.++|||.|||..+++++|+++|+.||.|..+.++.+ .++.+++||||+|.+.++|.+|+..|| +..+ .+++|.
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-g~~~---~g~~l~ 89 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAIN-NKQL---FGRVIK 89 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTT-TEEE---TTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcC-CCee---CCcEEE
Confidence 45689999999999999999999999999999999988 458889999999999999999999997 6666 689999
Q ss_pred eecCC
Q psy93 264 VEPLE 268 (503)
Q Consensus 264 V~~~~ 268 (503)
|.+++
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 98863
No 216
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.42 E-value=4e-13 Score=111.08 Aligned_cols=82 Identities=18% Similarity=0.170 Sum_probs=74.2
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
|+++|||+|||..+++++|+++|+.||.|..+.++.+ .++.+++||||+|.+.++|.+|+..|| +..+ .+++|.|
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~-g~~~---~g~~l~V 76 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLN-GYQL---GSRFLKC 76 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHT-TCEE---TTEECEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhC-CCeE---CCeEEEE
Confidence 4678999999999999999999999999999999988 578899999999999999999999997 6655 6899999
Q ss_pred ecCCccc
Q psy93 265 EPLELTD 271 (503)
Q Consensus 265 ~~~~~~~ 271 (503)
.++....
T Consensus 77 ~~a~~~~ 83 (96)
T 2x1f_A 77 GYSSNSD 83 (96)
T ss_dssp EECSCSS
T ss_pred EEcCCCC
Confidence 9987654
No 217
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.42 E-value=2.6e-13 Score=114.26 Aligned_cols=86 Identities=19% Similarity=0.211 Sum_probs=75.2
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
+.++|||.|||..+++++|+++|+.||.|..|.|+.+ .++.+++||||+|.+.++|.+|+..|| +..++...+++|.|
T Consensus 12 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~-g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 12 DAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALH-EQKTLPGMNRPIQV 90 (106)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHT-TTCCCTTCSSCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhc-CCcccCCCCceEEE
Confidence 4678999999999999999999999999999999988 468899999999999999999999998 44443446799999
Q ss_pred ecCCcccc
Q psy93 265 EPLELTDE 272 (503)
Q Consensus 265 ~~~~~~~~ 272 (503)
.++.....
T Consensus 91 ~~a~~~~~ 98 (106)
T 2dgp_A 91 KPADSESR 98 (106)
T ss_dssp EECCCCSC
T ss_pred EECCcccc
Confidence 99876643
No 218
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.42 E-value=1.5e-13 Score=125.15 Aligned_cols=119 Identities=15% Similarity=0.141 Sum_probs=100.7
Q ss_pred ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCC---CceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEE
Q psy93 187 NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERG---NSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVI 263 (503)
Q Consensus 187 ~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g---~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~ 263 (503)
.++|||+|||.++++++|+++|+.||.|.++.++.+..+ .+++||||+|.+.++|.+|+..|+ +..+.....+++.
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALH-NMKVLPGMHHPIQ 81 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHT-TTCCCTTCSSCCE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhc-CcEEccCCccceE
Confidence 578999999999999999999999999999999998644 789999999999999999999997 5555555678899
Q ss_pred eecCCccccccCCcccccCCCCchhhhhhccCcccCCCCCcch
Q psy93 264 VEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEF 306 (503)
Q Consensus 264 V~~~~~~~~~~~~~~k~i~k~~~~~~kere~~~rf~~~g~~e~ 306 (503)
+.+.............++..+++...++.++...|..+|.+..
T Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~ 124 (175)
T 3nmr_A 82 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEE 124 (175)
T ss_dssp EEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEE
T ss_pred EccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEE
Confidence 9888777665555566777788888888888888888887653
No 219
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.42 E-value=4.5e-13 Score=111.87 Aligned_cols=80 Identities=23% Similarity=0.346 Sum_probs=70.0
Q ss_pred cccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEE
Q psy93 184 APINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVI 263 (503)
Q Consensus 184 a~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~ 263 (503)
.+|+++|||+|||..+++++|.++|++||.|.++.++++ ++||||+|++.++|.+|+..|+...+.+ .+++|.
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~-----kg~AFVef~~~~~A~~Av~~ln~~~~~i--~Gr~i~ 90 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK-----KRQALVEFEDVLGACNAVNYAADNQIYI--AGHPAF 90 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCEEE--TTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhcCCCcee--CCcEEE
Confidence 357889999999999999999999999999999999864 7899999999999999999998443322 689999
Q ss_pred eecCCcc
Q psy93 264 VEPLELT 270 (503)
Q Consensus 264 V~~~~~~ 270 (503)
|.++..+
T Consensus 91 V~~S~~k 97 (100)
T 3r27_A 91 VNYSTSQ 97 (100)
T ss_dssp EEECSCS
T ss_pred EEecccc
Confidence 9997654
No 220
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=7.5e-13 Score=112.26 Aligned_cols=85 Identities=22% Similarity=0.274 Sum_probs=75.4
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhC-----CeeeecCC
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAE-----GCFFLTQS 258 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~-----g~~~~~~~ 258 (503)
.+.++|||.|||..+++++|+++|+.||.|..|.|+.+ .++.+++||||+|.+.++|.+|+..||. +..+ .
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~---~ 89 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL---D 89 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES---S
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE---c
Confidence 35689999999999999999999999999999999988 5688999999999999999999999962 5555 6
Q ss_pred CCeEEeecCCcccc
Q psy93 259 LRPVIVEPLELTDE 272 (503)
Q Consensus 259 ~rpl~V~~~~~~~~ 272 (503)
+++|.|.++.+...
T Consensus 90 g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 90 GRQLKVDLAVTRDE 103 (111)
T ss_dssp SCEEEEECCCCCCC
T ss_pred CEEEEEEECCCCcc
Confidence 89999999877644
No 221
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.42 E-value=2e-13 Score=119.19 Aligned_cols=73 Identities=16% Similarity=0.175 Sum_probs=64.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeE--EEEEec-----CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEec
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQ--ELFINK-----EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~--~v~i~~-----~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a 184 (503)
..++|||+|||+++|+++|+++|+.| .|. .|.|+. ++|||||+|.+.++|.+||.. ++..|.|+.|.|.++
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFKS 118 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEEC
Confidence 35689999999999999999999999 676 888864 479999999999999999985 779999999999877
Q ss_pred cc
Q psy93 185 PI 186 (503)
Q Consensus 185 ~~ 186 (503)
.+
T Consensus 119 ~~ 120 (126)
T 2hgm_A 119 SQ 120 (126)
T ss_dssp CH
T ss_pred CH
Confidence 43
No 222
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.41 E-value=1.1e-13 Score=115.67 Aligned_cols=80 Identities=19% Similarity=0.186 Sum_probs=72.3
Q ss_pred ccceeccCccc------ccCHHHHHHHhccCCCeeeeEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCC
Q psy93 187 NAAIKVKNLTS------CVTNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSL 259 (503)
Q Consensus 187 ~~~L~V~nLp~------~~tee~L~~~Fs~~G~V~~~~v~~d~-~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~ 259 (503)
.++|||.|||. .+++++|+++|++||.|.+|.|+.+. ++.++|||||+|.+.++|.+|+..|| +..+ .+
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ln-g~~~---~g 81 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFH-GKRL---DL 81 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHT-TCBS---SS
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhC-Cccc---CC
Confidence 57899999999 99999999999999999999999885 59999999999999999999999997 6555 56
Q ss_pred -CeEEeecCCcc
Q psy93 260 -RPVIVEPLELT 270 (503)
Q Consensus 260 -rpl~V~~~~~~ 270 (503)
++|.|.++.+.
T Consensus 82 ~r~l~V~~a~~~ 93 (100)
T 3ns6_A 82 KHRLFLYTMKDV 93 (100)
T ss_dssp SCBCEEEESHHH
T ss_pred CeEEEEEECchh
Confidence 89999988654
No 223
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.41 E-value=4.1e-13 Score=126.76 Aligned_cols=77 Identities=21% Similarity=0.449 Sum_probs=71.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEec
Q psy93 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a 184 (503)
...++|||+|||.++|+++|+++|+.||.|..|.|..+ ++||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 34579999999999999999999999999999999765 689999999999999999999999999999999998
Q ss_pred ccc
Q psy93 185 PIN 187 (503)
Q Consensus 185 ~~~ 187 (503)
.+.
T Consensus 203 ~~~ 205 (216)
T 2qfj_A 203 VTP 205 (216)
T ss_dssp SSC
T ss_pred cCC
Confidence 754
No 224
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=3.9e-13 Score=112.91 Aligned_cols=84 Identities=21% Similarity=0.208 Sum_probs=75.2
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEE
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVI 263 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~-~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~ 263 (503)
.+.++|||.|||..+++++|+++|+.||.|..|.|+.+. ++.+++||||+|.+.++|.+|+..|| +..+ .+++|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~---~g~~l~ 88 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMD-MIKL---YGKPIR 88 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSS-SCBC---SSCBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhC-CCeE---CCeEEE
Confidence 356899999999999999999999999999999999884 88999999999999999999999997 5555 689999
Q ss_pred eecCCcccc
Q psy93 264 VEPLELTDE 272 (503)
Q Consensus 264 V~~~~~~~~ 272 (503)
|.++.....
T Consensus 89 v~~a~~~~~ 97 (105)
T 1x5u_A 89 VNKASAHNK 97 (105)
T ss_dssp EEETTTTSC
T ss_pred EEECCCCCc
Confidence 999876643
No 225
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=2.8e-13 Score=113.22 Aligned_cols=84 Identities=23% Similarity=0.289 Sum_probs=74.5
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEE
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVI 263 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~ 263 (503)
.+.++|||.|||..+++++|+++|+.||.|..|.|+.+ .++.+++||||+|.+.++|.+|+..|| +..+ .+++|.
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-g~~~---~g~~l~ 85 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN-GKSV---DGRQIR 85 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHT-TCCT---TSCCCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhC-CCEE---CCeEEE
Confidence 45689999999999999999999999999999999988 477889999999999999999999997 5555 689999
Q ss_pred eecCCcccc
Q psy93 264 VEPLELTDE 272 (503)
Q Consensus 264 V~~~~~~~~ 272 (503)
|.++.....
T Consensus 86 v~~a~~~~~ 94 (102)
T 1x5s_A 86 VDQAGKSSD 94 (102)
T ss_dssp EEEEECCCC
T ss_pred EEECCCCCC
Confidence 998766543
No 226
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=6.6e-13 Score=111.70 Aligned_cols=81 Identities=20% Similarity=0.193 Sum_probs=73.0
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
+.++|||+|||..+++++|+++|+.||.|..|.|+.+ .++.+++||||+|.+.++|.+|+..|| +..+ .+++|.|
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~---~g~~l~V 97 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLN-GQDL---MGQPISV 97 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHT-TCBS---SSSBCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhc-CCEE---CCcEEEE
Confidence 4578999999999999999999999999999999988 568899999999999999999999997 5555 5899999
Q ss_pred ecCCcc
Q psy93 265 EPLELT 270 (503)
Q Consensus 265 ~~~~~~ 270 (503)
.++.+.
T Consensus 98 ~~a~~~ 103 (106)
T 1p27_B 98 DWCFVR 103 (106)
T ss_dssp EESEES
T ss_pred EeecCC
Confidence 987654
No 227
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=3.7e-13 Score=112.71 Aligned_cols=82 Identities=18% Similarity=0.190 Sum_probs=73.8
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
+.++|||.|||..+++++|+++|+.||.|..|.|+.+ .++.+++||||+|.+.++|.+|+..|| +..+ .+++|.|
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-g~~~---~g~~l~V 87 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMD-GAEL---DGRELRV 87 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHS-SCCB---TTBCCEE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcC-CCEE---CCcEEEE
Confidence 4689999999999999999999999999999999988 468899999999999999999999997 5555 6899999
Q ss_pred ecCCccc
Q psy93 265 EPLELTD 271 (503)
Q Consensus 265 ~~~~~~~ 271 (503)
.++....
T Consensus 88 ~~a~~~~ 94 (103)
T 2dnm_A 88 QVARYGR 94 (103)
T ss_dssp EECSSCC
T ss_pred EECCcCC
Confidence 9987653
No 228
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=9.8e-13 Score=110.13 Aligned_cols=83 Identities=23% Similarity=0.171 Sum_probs=73.5
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
.+.++|||.|||..+++++|+++|+.||.|..|.|+.+... +++||||+|.+.++|.+|+..|| +..+ .+++|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~-g~~~---~g~~l~V 87 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMN-GRKI---LGKEVKV 87 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHT-TEEE---TTEEEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhC-CCCc---CCCeEEE
Confidence 45689999999999999999999999999999999988543 68999999999999999999997 6666 6899999
Q ss_pred ecCCcccc
Q psy93 265 EPLELTDE 272 (503)
Q Consensus 265 ~~~~~~~~ 272 (503)
.++.....
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqi_A 88 NWATTPSS 95 (103)
T ss_dssp EECCCTTC
T ss_pred EECCCCcc
Confidence 99876543
No 229
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=4e-13 Score=113.12 Aligned_cols=80 Identities=11% Similarity=0.016 Sum_probs=71.8
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEee
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVE 265 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~ 265 (503)
..++|||+|||.++|+++|.++|+.||.|.+|.|+.+..+.++|||||+|.+.++|.+|+. ++ +..+ .+++|.|.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~-~~~~---~gr~l~V~ 84 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TP-GQKY---KETDLLIL 84 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SS-CCCC---TTTTCEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cC-CCEE---CCEEEEEE
Confidence 4679999999999999999999999999999999999779999999999999999999999 65 6555 68999998
Q ss_pred cCCcc
Q psy93 266 PLELT 270 (503)
Q Consensus 266 ~~~~~ 270 (503)
+....
T Consensus 85 ~~~~~ 89 (103)
T 1s79_A 85 FKDDY 89 (103)
T ss_dssp EHHHH
T ss_pred EchHH
Confidence 76543
No 230
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.40 E-value=7.9e-13 Score=108.18 Aligned_cols=82 Identities=27% Similarity=0.240 Sum_probs=73.1
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
.+.++|||.|||..+++++|+++|+.||.|..+.|+.+ ++.+++||||+|.+.++|.+|+..|| +..+ .+++|.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~-g~~~---~g~~l~v 80 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMN-GMKL---SGREIDV 80 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHT-TCCB---TTBCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhC-CCEE---CCcEEEE
Confidence 35689999999999999999999999999999999885 78899999999999999999999997 5555 6888999
Q ss_pred ecCCccc
Q psy93 265 EPLELTD 271 (503)
Q Consensus 265 ~~~~~~~ 271 (503)
.++....
T Consensus 81 ~~a~~~~ 87 (92)
T 2dgv_A 81 RIDRNAS 87 (92)
T ss_dssp EECSCCS
T ss_pred EEcCCCC
Confidence 8876654
No 231
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=7.5e-13 Score=111.05 Aligned_cols=79 Identities=14% Similarity=0.194 Sum_probs=70.0
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhh-CCeeeecCCCCeEE
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCA-EGCFFLTQSLRPVI 263 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln-~g~~~~~~~~rpl~ 263 (503)
++.++|||+|||..+++++|+++|+.||.|..|.++.+ ++||||+|.+.++|.+|+..|+ ++..+ .+++|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~---~Gr~l~ 84 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHL---RNQPIY 84 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEE---TTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceE---CCcEEE
Confidence 46789999999999999999999999999999988876 8899999999999999999886 35455 699999
Q ss_pred eecCCccc
Q psy93 264 VEPLELTD 271 (503)
Q Consensus 264 V~~~~~~~ 271 (503)
|.++....
T Consensus 85 V~~a~~~~ 92 (101)
T 2cq1_A 85 IQYSNHKE 92 (101)
T ss_dssp EEECSCSS
T ss_pred EEEcCccc
Confidence 99987653
No 232
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=9.6e-13 Score=112.29 Aligned_cols=84 Identities=17% Similarity=0.262 Sum_probs=73.3
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeec-----CCC
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLT-----QSL 259 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~-----~~~ 259 (503)
.+.++|||.|||..+++++|+++|+.||.|..|.|+.+.++.+++||||+|.+.++|.+|+..|| +..+.. ..+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFN-GKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHB-TCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhC-CCEEcCCccccCCC
Confidence 34689999999999999999999999999999999999889999999999999999999999998 444321 147
Q ss_pred CeEEeecCCc
Q psy93 260 RPVIVEPLEL 269 (503)
Q Consensus 260 rpl~V~~~~~ 269 (503)
+++.|.++++
T Consensus 102 ~~l~v~~a~p 111 (114)
T 1x5o_A 102 EPLLCKFSGP 111 (114)
T ss_dssp SCBEEEECCC
T ss_pred CceeEEccCC
Confidence 7888888764
No 233
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.40 E-value=4.2e-13 Score=122.05 Aligned_cols=73 Identities=22% Similarity=0.406 Sum_probs=69.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEec
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a 184 (503)
..++|||+|||+++|+++|+++|++||+|..|.+..+ +|||||+|.+.++|.+|+..||+..|.|++|.|.||
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 4678999999999999999999999999999999765 589999999999999999999999999999999987
No 234
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.40 E-value=8.2e-13 Score=112.04 Aligned_cols=81 Identities=28% Similarity=0.382 Sum_probs=73.4
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
+.++|||+|||..+++++|+++|+.||.|..|.++.+ .++.+++||||+|.+.++|.+|+..|| +..+ .+++|.|
T Consensus 25 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~-g~~i---~g~~l~V 100 (108)
T 2jrs_A 25 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLN-GFEL---AGRPMKV 100 (108)
T ss_dssp SCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHT-TCCS---SSSCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcC-CCEE---CCEEEEE
Confidence 4678999999999999999999999999999999988 578899999999999999999999997 5555 6899999
Q ss_pred ecCCcc
Q psy93 265 EPLELT 270 (503)
Q Consensus 265 ~~~~~~ 270 (503)
.++.+.
T Consensus 101 ~~a~~k 106 (108)
T 2jrs_A 101 GHVTER 106 (108)
T ss_dssp ECSCSS
T ss_pred EEcccC
Confidence 988665
No 235
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.40 E-value=7.6e-13 Score=116.02 Aligned_cols=82 Identities=22% Similarity=0.218 Sum_probs=74.0
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEE
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVI 263 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~ 263 (503)
.+.++|||.|||..+++++|+++|+.||.|..|.|+.+ .++.+++||||+|.+.++|.+|+..|| +..+ .+++|.
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ln-g~~i---~g~~l~ 119 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN-GMEL---DGRRIR 119 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHT-TCCS---SSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC-CCEE---CCEEEE
Confidence 45789999999999999999999999999999999988 578899999999999999999999997 5555 689999
Q ss_pred eecCCcc
Q psy93 264 VEPLELT 270 (503)
Q Consensus 264 V~~~~~~ 270 (503)
|.++...
T Consensus 120 V~~a~~~ 126 (129)
T 2kxn_B 120 VDFSITK 126 (129)
T ss_dssp ESCCSSS
T ss_pred EEEecCC
Confidence 9998665
No 236
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=7.7e-13 Score=109.88 Aligned_cols=82 Identities=17% Similarity=0.226 Sum_probs=72.2
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCee-eeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCe-
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIE-RAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRP- 261 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~-~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rp- 261 (503)
.+.++|||.|||..+++++|+++|+.||.|. .|.|+.+ .++.+++||||+|.+.++|.+|+..|| +..+ .++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-g~~~---~g~~~ 82 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKIN-GKPL---PGATP 82 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTT-TSEE---SSCSS
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHc-CCcc---CCCCc
Confidence 4578999999999999999999999999999 9999998 488999999999999999999999997 5555 4555
Q ss_pred ---EEeecCCcc
Q psy93 262 ---VIVEPLELT 270 (503)
Q Consensus 262 ---l~V~~~~~~ 270 (503)
|.|.++...
T Consensus 83 ~~~l~v~~a~~~ 94 (99)
T 2div_A 83 AKRFKLNYATYS 94 (99)
T ss_dssp CEECCEEETTCC
T ss_pred ceeEEEeecCCC
Confidence 888887554
No 237
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=3.9e-13 Score=113.69 Aligned_cols=87 Identities=16% Similarity=0.140 Sum_probs=75.2
Q ss_pred cccccceeccCcccccCHHHHHHHhccCCC-eeeeEEE-eC-CCCCceeEEEEEeCCHHHHHHHHHHhhCC-eeeecCCC
Q psy93 184 APINAAIKVKNLTSCVTNELLELAFGVFGD-IERAIVI-VD-ERGNSKCEGIVEFARKPAAAQALRRCAEG-CFFLTQSL 259 (503)
Q Consensus 184 a~~~~~L~V~nLp~~~tee~L~~~Fs~~G~-V~~~~v~-~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g-~~~~~~~~ 259 (503)
+.+.++|||+|||..+++++|+++|+.||. |..+.++ .+ .++.+++||||+|.+.++|.+|+..|+++ ..+ .+
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~---~g 81 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQL---WG 81 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCB---TT
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCcee---cC
Confidence 456789999999999999999999999998 9999887 55 46788999999999999999999999544 545 68
Q ss_pred CeEEeecCCccccc
Q psy93 260 RPVIVEPLELTDEI 273 (503)
Q Consensus 260 rpl~V~~~~~~~~~ 273 (503)
++|.|.++.+....
T Consensus 82 ~~l~V~~a~~~~~~ 95 (109)
T 2dis_A 82 HQIAVDWAEPEIDV 95 (109)
T ss_dssp BCCEEEESCSSCST
T ss_pred CeEEEEEcCCCCCc
Confidence 99999998776543
No 238
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.39 E-value=1.1e-12 Score=108.98 Aligned_cols=79 Identities=32% Similarity=0.302 Sum_probs=71.4
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeee--------eEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeee
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIER--------AIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFL 255 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~--------~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~ 255 (503)
.+.++|||+|||..+++++|+++|+.||.|.. +.++.+ .++.++|||||+|.+.++|.+|+..|| +..+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~-g~~~- 88 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD-GKEF- 88 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHT-TCBS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhC-CCEe-
Confidence 35689999999999999999999999999999 999998 578999999999999999999999997 5555
Q ss_pred cCCCCeEEeecC
Q psy93 256 TQSLRPVIVEPL 267 (503)
Q Consensus 256 ~~~~rpl~V~~~ 267 (503)
.++.|.|.++
T Consensus 89 --~g~~l~V~~A 98 (99)
T 2la6_A 89 --SGNPIKVSFA 98 (99)
T ss_dssp --SSSBCEEEEC
T ss_pred --CCcEEEEEec
Confidence 5888998875
No 239
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=9e-13 Score=112.26 Aligned_cols=84 Identities=25% Similarity=0.257 Sum_probs=75.3
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCee--------eeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeee
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIE--------RAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFL 255 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~--------~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~ 255 (503)
.+.++|||.|||..+++++|+++|+.||.|. .|.|+.+ .++.+++||||+|.+.++|.+|+..|| +..+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~-g~~~- 90 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFD-GKDF- 90 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHT-TCEE-
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcC-CCcc-
Confidence 4568999999999999999999999999999 6899888 688999999999999999999999997 6666
Q ss_pred cCCCCeEEeecCCcccc
Q psy93 256 TQSLRPVIVEPLELTDE 272 (503)
Q Consensus 256 ~~~~rpl~V~~~~~~~~ 272 (503)
.+++|.|.++.....
T Consensus 91 --~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 --QGSKLKVSLARKKPP 105 (113)
T ss_dssp --TTEECEEECSSCCCC
T ss_pred --CCCEEEEEECCCCCC
Confidence 689999999877644
No 240
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=1.4e-12 Score=111.36 Aligned_cols=81 Identities=14% Similarity=0.180 Sum_probs=69.3
Q ss_pred CCCcEEEEcCCCCCCC-----------HHHHHHhhccCCCeEEEEEe--cCCCceEEeeCCHHHHHHHHHHhCCccccCc
Q psy93 111 ANNCRLYLGNIGGDIT-----------ENDIIELFKPYGETQELFIN--KEKMFGFIRMDYKHNADKAKAKLDGHVLKGR 177 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~t-----------e~~L~~~F~~~G~V~~v~i~--~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~ 177 (503)
+++++|+|.||....+ +++|+++|++||+|.+|.|. .++|||||+|.+.++|.+|+..||+..|.|+
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 92 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGR 92 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 3467899999944332 58999999999999999775 3489999999999999999999999999999
Q ss_pred eEEEEeccccccee
Q psy93 178 SLKIRFAPINAAIK 191 (503)
Q Consensus 178 ~l~V~~a~~~~~L~ 191 (503)
+|.|.++.+.....
T Consensus 93 ~l~v~~a~~~~~~~ 106 (112)
T 2dit_A 93 QITAQAWDGTTDYQ 106 (112)
T ss_dssp ECEEEECCSCCCSS
T ss_pred EEEEEEeCCCCCcc
Confidence 99999998765443
No 241
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.38 E-value=9.4e-13 Score=130.01 Aligned_cols=76 Identities=24% Similarity=0.364 Sum_probs=71.3
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCC-CceEEeeCCHHHHHHHHHHhCCcccc-CceEEEEecc
Q psy93 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEK-MFGFIRMDYKHNADKAKAKLDGHVLK-GRSLKIRFAP 185 (503)
Q Consensus 110 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k-g~aFV~F~~~e~A~~Ai~~l~g~~l~-g~~l~V~~a~ 185 (503)
...+++|||+|||.++|+++|+++|+.||.|.+|.|..++ +||||+|.+.++|.+|+..||+..|. |+.|+|.|++
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 3456899999999999999999999999999999998775 99999999999999999999999999 9999999985
No 242
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.38 E-value=6.2e-13 Score=119.91 Aligned_cols=115 Identities=18% Similarity=0.239 Sum_probs=96.2
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~-~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
++++|||+|||..+++++|+++|+.||.|..+.++.+. ++.+++||||+|.+.++|.+|+..|+ +..+ .++++.|
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~-~~~~---~g~~l~v 76 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLN-GLRL---QTKTIKV 76 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-TCEE---TTEECEE
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcC-CCcc---CCceEEE
Confidence 35789999999999999999999999999999999985 88999999999999999999999997 6655 6889999
Q ss_pred ecCCccccccCCcccccCCCCchhhhhhccCcccCCCCCcc
Q psy93 265 EPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFE 305 (503)
Q Consensus 265 ~~~~~~~~~~~~~~k~i~k~~~~~~kere~~~rf~~~g~~e 305 (503)
.+..+..... ....+...+++...++.++...|..+|.+.
T Consensus 77 ~~~~~~~~~~-~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~ 116 (167)
T 1fxl_A 77 SYARPSSASI-RDANLYVSGLPKTMTQKELEQLFSQYGRII 116 (167)
T ss_dssp EECCCCCGGG-TTCEEEEESCCTTCCHHHHHHHHGGGSCEE
T ss_pred EecCCCcccC-CCCcEEECCCCCcCCHHHHHHHHHhcCCEe
Confidence 9887654422 234455667777777788888888888764
No 243
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.38 E-value=2e-12 Score=124.22 Aligned_cols=76 Identities=25% Similarity=0.367 Sum_probs=71.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCC-CeEEEEEe-cCCCceEEeeCCHHHHHHHHHHhCCcccc-CceEEEEeccc
Q psy93 111 ANNCRLYLGNIGGDITENDIIELFKPYG-ETQELFIN-KEKMFGFIRMDYKHNADKAKAKLDGHVLK-GRSLKIRFAPI 186 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~~~F~~~G-~V~~v~i~-~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~-g~~l~V~~a~~ 186 (503)
.++++|||+|||+++++++|+++|+.|| .|..|.|. .+++||||+|.+.++|.+|+..||+..|. |++|+|.|+.+
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 3468999999999999999999999999 99999994 48999999999999999999999999999 99999999875
No 244
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.38 E-value=1.5e-12 Score=109.02 Aligned_cols=82 Identities=20% Similarity=0.160 Sum_probs=72.8
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEE
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVI 263 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~-~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~ 263 (503)
.+.++|||.|||..+++++|+++|+.|| |..|.|+.+. ++.+++||||+|.+.++|.+|+ .|| +..+ .+++|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~-g~~~---~g~~l~ 86 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYD-GALL---GDRSLR 86 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGT-TCEE---TTEECE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhC-CCeE---CCeEEE
Confidence 3467999999999999999999999997 9999999984 6889999999999999999999 886 6666 689999
Q ss_pred eecCCcccc
Q psy93 264 VEPLELTDE 272 (503)
Q Consensus 264 V~~~~~~~~ 272 (503)
|.++.....
T Consensus 87 V~~a~~~~~ 95 (103)
T 2dng_A 87 VDIAEGRKQ 95 (103)
T ss_dssp EEECCCCCC
T ss_pred EEEecCCCC
Confidence 999876543
No 245
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.38 E-value=1.4e-12 Score=121.73 Aligned_cols=76 Identities=24% Similarity=0.360 Sum_probs=71.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCC-CeEEEEEec-CCCceEEeeCCHHHHHHHHHHhCCcccc-CceEEEEeccc
Q psy93 111 ANNCRLYLGNIGGDITENDIIELFKPYG-ETQELFINK-EKMFGFIRMDYKHNADKAKAKLDGHVLK-GRSLKIRFAPI 186 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~~~F~~~G-~V~~v~i~~-~kg~aFV~F~~~e~A~~Ai~~l~g~~l~-g~~l~V~~a~~ 186 (503)
.++++|||+|||.++++++|+++|+.|| .|..|.|.. +++||||+|.+.++|.+|+..||+..|. |++|+|.|+.+
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 3568999999999999999999999999 999999954 7899999999999999999999999999 99999999865
No 246
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.38 E-value=1.3e-12 Score=118.23 Aligned_cols=74 Identities=24% Similarity=0.490 Sum_probs=68.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccC--ceEEEE
Q psy93 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKG--RSLKIR 182 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g--~~l~V~ 182 (503)
...++|||+|||.++++++|+++|+.||.|..|.+.++ ++||||+|.+.++|.+|+..||+..|.| ++|+|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 35679999999999999999999999999999999765 4899999999999999999999999987 999999
Q ss_pred ec
Q psy93 183 FA 184 (503)
Q Consensus 183 ~a 184 (503)
||
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 247
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.38 E-value=6.2e-13 Score=123.79 Aligned_cols=77 Identities=21% Similarity=0.403 Sum_probs=71.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEec
Q psy93 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a 184 (503)
...++|||+|||+++++++|+++|+.||.|..|.+..+ ++||||+|.+.++|.+|+..||+..|.|++|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 35689999999999999999999999999999999755 689999999999999999999999999999999999
Q ss_pred ccc
Q psy93 185 PIN 187 (503)
Q Consensus 185 ~~~ 187 (503)
.+.
T Consensus 192 ~~~ 194 (198)
T 2yh0_A 192 SVG 194 (198)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 248
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=1.5e-12 Score=106.53 Aligned_cols=79 Identities=16% Similarity=0.168 Sum_probs=72.6
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEee
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVE 265 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~ 265 (503)
..++|||+|||..+++++|+++|+.| .|..|.|+.+.++.+++||||+|.+.++|.+|+. || +..+ .+++|.|.
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~-g~~~---~gr~i~v~ 82 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CN-REYM---GGRYIEVF 82 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SC-SEEE---TTEEEEEE
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hC-Ccee---CCcEEEEE
Confidence 46789999999999999999999999 9999999999889999999999999999999999 86 7776 68999999
Q ss_pred cCCcc
Q psy93 266 PLELT 270 (503)
Q Consensus 266 ~~~~~ 270 (503)
++...
T Consensus 83 ~a~~~ 87 (91)
T 2dgw_A 83 REKSG 87 (91)
T ss_dssp EESSC
T ss_pred ECCcC
Confidence 87655
No 249
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=8.4e-13 Score=113.92 Aligned_cols=79 Identities=14% Similarity=0.165 Sum_probs=69.9
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhC-CeeeecCCCCeEE
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAE-GCFFLTQSLRPVI 263 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~-g~~~~~~~~rpl~ 263 (503)
++.++|||+|||+.+++++|+++|+.||.|.+|.|+.+ ++||||+|++.++|.+|+..|+. +..+ .+++|.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l---~Gr~l~ 100 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVL---RGQPIY 100 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCB---TTBCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceE---CCeEEE
Confidence 45789999999999999999999999999999999876 89999999999999999999873 2334 689999
Q ss_pred eecCCccc
Q psy93 264 VEPLELTD 271 (503)
Q Consensus 264 V~~~~~~~ 271 (503)
|.++....
T Consensus 101 V~~a~~k~ 108 (119)
T 2ad9_A 101 IQFSNHKE 108 (119)
T ss_dssp EEECSSSS
T ss_pred EEEccCCC
Confidence 99986654
No 250
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.38 E-value=9.4e-13 Score=106.95 Aligned_cols=78 Identities=27% Similarity=0.336 Sum_probs=71.2
Q ss_pred ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEee
Q psy93 187 NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVE 265 (503)
Q Consensus 187 ~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~ 265 (503)
.++|||+|||..+++++|+++|+.||.|..+.++.+ .++.+++||||+|.+.++|.+|+ .|| +..+ .+++|.|.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~-g~~~---~g~~l~V~ 80 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALD-ESLF---RGRQIKVI 80 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGT-TCEE---TTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcC-CCEE---CCcEEEEE
Confidence 578999999999999999999999999999999998 48899999999999999999999 886 6666 68999999
Q ss_pred cCCc
Q psy93 266 PLEL 269 (503)
Q Consensus 266 ~~~~ 269 (503)
++.+
T Consensus 81 ~a~~ 84 (89)
T 3ucg_A 81 PKRT 84 (89)
T ss_dssp ETTT
T ss_pred EccC
Confidence 8754
No 251
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.38 E-value=1.3e-12 Score=115.46 Aligned_cols=83 Identities=22% Similarity=0.280 Sum_probs=74.9
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
+.++|||+|||..+++++|+++|+.||.|..|.|+.+ .++.+++||||+|.+.++|.+|+..|| +..+ .++.|.|
T Consensus 41 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~---~g~~l~v 116 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLN-GFNI---LNKRLKV 116 (139)
T ss_dssp TTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTT-TEEC---SSCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhC-CCEE---CCeEEEE
Confidence 3578999999999999999999999999999999988 468889999999999999999999997 6665 6899999
Q ss_pred ecCCcccc
Q psy93 265 EPLELTDE 272 (503)
Q Consensus 265 ~~~~~~~~ 272 (503)
.++.....
T Consensus 117 ~~a~~~~~ 124 (139)
T 1u6f_A 117 ALAASGHQ 124 (139)
T ss_dssp EESSCCCC
T ss_pred EECCCCCC
Confidence 99877644
No 252
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=1.3e-12 Score=109.71 Aligned_cols=83 Identities=18% Similarity=0.217 Sum_probs=74.7
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEE
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVI 263 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~ 263 (503)
.+.++|||.|||..+++++|+++|+.||.|..|.|+.+ .++.+++||||+|.+.++|.+|+.. + +..+ .++.|.
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~-~~~~---~g~~l~ 88 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-R-PHTL---DGRNID 88 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-C-SEEE---TTEEEB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-C-CCeE---CCEEEE
Confidence 45689999999999999999999999999999999998 5789999999999999999999998 4 7766 689999
Q ss_pred eecCCcccc
Q psy93 264 VEPLELTDE 272 (503)
Q Consensus 264 V~~~~~~~~ 272 (503)
|.++.+...
T Consensus 89 V~~a~~~~~ 97 (105)
T 2dh8_A 89 PKPCTPRGM 97 (105)
T ss_dssp CCCSCCSSC
T ss_pred EEEccCCCC
Confidence 999876643
No 253
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.37 E-value=1e-12 Score=111.44 Aligned_cols=82 Identities=17% Similarity=0.162 Sum_probs=74.0
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEE
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVI 263 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~ 263 (503)
.+.++|||+|||..+++++|+++|+.||.|..|.++.+ .++.+++||||+|.+.++|.+|+..|| +..+ .+++|.
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~-g~~~---~g~~l~ 99 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALN-GAEI---MGQTIQ 99 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHT-TCEE---TTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcC-CCEE---CCcEEE
Confidence 34678999999999999999999999999999999888 578899999999999999999999997 6655 689999
Q ss_pred eecCCcc
Q psy93 264 VEPLELT 270 (503)
Q Consensus 264 V~~~~~~ 270 (503)
|.++...
T Consensus 100 V~~a~~~ 106 (110)
T 1oo0_B 100 VDWCFVK 106 (110)
T ss_dssp EEESEES
T ss_pred EEEcccC
Confidence 9987654
No 254
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.37 E-value=6.6e-13 Score=107.55 Aligned_cols=74 Identities=14% Similarity=0.164 Sum_probs=67.7
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEee
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVE 265 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~ 265 (503)
.+..|+|+||++.+|+++|+++|.+||+|.+++++. ++|||||+|.+.++|.+|++.|| ++.+ .+++|.|+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln-~~~l---~gr~I~V~ 76 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALN-NCVL---ANTTIFAE 76 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHT-TEEE---TTEEEEEE
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhc-CCEE---CCcEEEEE
Confidence 356799999999999999999999999999999976 49999999999999999999997 6776 69999999
Q ss_pred cCC
Q psy93 266 PLE 268 (503)
Q Consensus 266 ~~~ 268 (503)
++.
T Consensus 77 ~A~ 79 (89)
T 2wbr_A 77 SPS 79 (89)
T ss_dssp CCC
T ss_pred ECC
Confidence 884
No 255
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.37 E-value=8e-13 Score=108.81 Aligned_cols=79 Identities=20% Similarity=0.171 Sum_probs=70.2
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
+.++|||.|||..+++++|+++|+.||.|..+.++.+ .++.+++||||+|.+.++|.+|+..|| +..+ .+++|.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~-g~~~---~gr~l~v 89 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLN-DRPI---GSRKVKL 89 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT-TCEE---TTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhC-CCeE---CCcEEEE
Confidence 4578999999999999999999999999998888776 678899999999999999999999997 6666 6889999
Q ss_pred ecCC
Q psy93 265 EPLE 268 (503)
Q Consensus 265 ~~~~ 268 (503)
.++.
T Consensus 90 ~~a~ 93 (95)
T 2ek1_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred Eecc
Confidence 8764
No 256
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.2e-12 Score=109.97 Aligned_cols=82 Identities=17% Similarity=0.097 Sum_probs=73.0
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCC-C-CCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeE
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-R-GNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPV 262 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~-~-g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl 262 (503)
.+.++|||.|||..+++++|+++|+.|| |..|.|+.+. + +.+++||||+|.+.++|.+|| .|| +..+ .+++|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~-g~~~---~g~~l 86 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLN-EESL---GNKRI 86 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGG-TCEE---TTEEC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcC-CCEe---CCcEE
Confidence 3568999999999999999999999999 9999999885 3 889999999999999999999 887 6555 68999
Q ss_pred EeecCCcccc
Q psy93 263 IVEPLELTDE 272 (503)
Q Consensus 263 ~V~~~~~~~~ 272 (503)
.|.++.....
T Consensus 87 ~V~~a~~~~~ 96 (104)
T 1wi8_A 87 RVDVADQAQD 96 (104)
T ss_dssp EEEECCCCCC
T ss_pred EEEEccCCCC
Confidence 9999877654
No 257
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.37 E-value=1.3e-12 Score=113.30 Aligned_cols=81 Identities=26% Similarity=0.362 Sum_probs=74.3
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEee
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVE 265 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~ 265 (503)
+.++|||+|||..+++++|+++|+.||.|..|.|+.+.++.+++||||+|.+.++|.+|+..|| +..+ .+++|.|.
T Consensus 34 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~-g~~~---~g~~l~V~ 109 (124)
T 2kt5_A 34 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYK-GVPL---DGRPMDIQ 109 (124)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHT-TEES---SSCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcC-CCEE---CCcEEEEE
Confidence 4679999999999999999999999999999999998888999999999999999999999997 6655 68999999
Q ss_pred cCCcc
Q psy93 266 PLELT 270 (503)
Q Consensus 266 ~~~~~ 270 (503)
++...
T Consensus 110 ~a~~~ 114 (124)
T 2kt5_A 110 LVASQ 114 (124)
T ss_dssp EECCT
T ss_pred EeCCC
Confidence 87654
No 258
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.37 E-value=1.8e-12 Score=117.08 Aligned_cols=82 Identities=22% Similarity=0.197 Sum_probs=74.5
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~-~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
+.++|||.|||..+++++|+++|+.||.|..|.|+.+. ++.+++||||+|.+.++|.+||..|| +..+ .+++|.|
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~-g~~~---~g~~l~V 113 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYIN-GTRL---DDRIIRT 113 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT-TSEE---TTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC-CCEE---CCeEEEE
Confidence 56899999999999999999999999999999999984 68899999999999999999999997 6666 6899999
Q ss_pred ecCCccc
Q psy93 265 EPLELTD 271 (503)
Q Consensus 265 ~~~~~~~ 271 (503)
.++....
T Consensus 114 ~~a~~~~ 120 (156)
T 1h2v_Z 114 DWDAGFK 120 (156)
T ss_dssp EEESCCC
T ss_pred EECCCCC
Confidence 9987653
No 259
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.36 E-value=2.5e-12 Score=104.16 Aligned_cols=78 Identities=17% Similarity=0.192 Sum_probs=69.0
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEE
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVI 263 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~ 263 (503)
.+.++|||+|||..+++++|+++|+.||.|..+.++.+ .++.+++||||+|.+.++|.+|+.. + +..+ .+++|.
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~-~~~~---~g~~i~ 83 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-K-EHRL---DGRVID 83 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-S-CEEE---TTEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-C-CCEE---CCEEEE
Confidence 35679999999999999999999999999999999988 5789999999999999999999965 4 5555 788998
Q ss_pred eecC
Q psy93 264 VEPL 267 (503)
Q Consensus 264 V~~~ 267 (503)
|+++
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 8764
No 260
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.36 E-value=1.9e-12 Score=109.23 Aligned_cols=79 Identities=18% Similarity=0.236 Sum_probs=69.1
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCC-eeeecCCCCeEE
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEG-CFFLTQSLRPVI 263 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g-~~~~~~~~rpl~ 263 (503)
.+.++|||+|||..+++++|+++|++||.|..|.++++ ++||||+|.+.++|.+|+..|+.. ..+ .+++|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i---~Gr~l~ 84 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYI---AGQQAF 84 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBS---SSSBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceE---CCEEEE
Confidence 46789999999999999999999999999999988865 789999999999999999998732 223 689999
Q ss_pred eecCCccc
Q psy93 264 VEPLELTD 271 (503)
Q Consensus 264 V~~~~~~~ 271 (503)
|.++....
T Consensus 85 V~~a~~~~ 92 (104)
T 1wex_A 85 FNYSTSKR 92 (104)
T ss_dssp EEECSSSS
T ss_pred EEEccCcc
Confidence 99987654
No 261
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.36 E-value=1.3e-12 Score=118.30 Aligned_cols=81 Identities=21% Similarity=0.173 Sum_probs=72.9
Q ss_pred cccceeccCcccccCHHHHHHHhccCC--CeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeE
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFG--DIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPV 262 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G--~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl 262 (503)
..++|||+|||..+++++|+++|+.|| .|..|.|+.| .++.++|||||+|.+.++|.+||..|| +..+ .+++|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~ln-g~~~---~Gr~l 129 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLP-GKVL---NGEKV 129 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHST-TCEE---TTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC-CCEE---CCeEe
Confidence 457999999999999999999999999 9999999998 589999999999999999999999997 6666 68999
Q ss_pred EeecCCcc
Q psy93 263 IVEPLELT 270 (503)
Q Consensus 263 ~V~~~~~~ 270 (503)
.|.++...
T Consensus 130 ~V~~a~~~ 137 (156)
T 3n9u_C 130 DVRPATRQ 137 (156)
T ss_dssp EEEECCHH
T ss_pred EEEEcCCC
Confidence 99987553
No 262
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.36 E-value=1.4e-12 Score=111.07 Aligned_cols=82 Identities=15% Similarity=0.174 Sum_probs=72.6
Q ss_pred cccceeccCcccccCHHHHH---HHhccCCCeeeeEEEeCC----CCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCC
Q psy93 186 INAAIKVKNLTSCVTNELLE---LAFGVFGDIERAIVIVDE----RGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQS 258 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~---~~Fs~~G~V~~~~v~~d~----~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~ 258 (503)
..++|||.|||..+++++|. ++|++||.|..|.|+.+. .+.+++||||+|.+.++|.+|+..|| +..+ .
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~ln-g~~~---~ 89 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVN-NVVV---D 89 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHT-TEEE---T
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhC-CCEE---C
Confidence 46799999999999999999 999999999999998874 23567999999999999999999997 7666 6
Q ss_pred CCeEEeecCCccc
Q psy93 259 LRPVIVEPLELTD 271 (503)
Q Consensus 259 ~rpl~V~~~~~~~ 271 (503)
+++|.|.++.+..
T Consensus 90 gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 GRTLKASLGTTKY 102 (111)
T ss_dssp TEEEEEESCCCCS
T ss_pred CEEEEEEeccccc
Confidence 9999999987653
No 263
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.5e-12 Score=107.85 Aligned_cols=79 Identities=14% Similarity=0.155 Sum_probs=71.3
Q ss_pred cccceeccCcccccCHHHHH----HHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCe
Q psy93 186 INAAIKVKNLTSCVTNELLE----LAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRP 261 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~----~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rp 261 (503)
..++|||+|||..+++++|+ ++|+.||.|.+|.|+.+... ++||||+|.+.++|.+|+..|| +..+ .+++
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~-g~~~---~gr~ 81 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLH-RYKI---GSKK 81 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHT-TEEE---TTEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhC-CCEE---CCeE
Confidence 45789999999999999999 99999999999999988655 7899999999999999999997 7666 6999
Q ss_pred EEeecCCcc
Q psy93 262 VIVEPLELT 270 (503)
Q Consensus 262 l~V~~~~~~ 270 (503)
|.|.++.+.
T Consensus 82 l~V~~a~~~ 90 (96)
T 2dgx_A 82 ILVSLATGA 90 (96)
T ss_dssp EEEEECCCS
T ss_pred EEEEEcCCC
Confidence 999998654
No 264
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.36 E-value=1.1e-12 Score=108.62 Aligned_cols=80 Identities=20% Similarity=0.126 Sum_probs=71.2
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
..++|||.|||..+++++|+++|+.||.|..+.++.+ .++.+++||||+|.+.++|.+|+..|| +..+ .+++|.|
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~-g~~~---~g~~l~V 89 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLN-DRPI---GSRKVKL 89 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTT-TCEE---TTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhC-CCee---CCeEEEE
Confidence 4578999999999999999999999999998877766 678899999999999999999999997 6555 6899999
Q ss_pred ecCCc
Q psy93 265 EPLEL 269 (503)
Q Consensus 265 ~~~~~ 269 (503)
.++..
T Consensus 90 ~~a~~ 94 (98)
T 2cqp_A 90 VLGSG 94 (98)
T ss_dssp EESSC
T ss_pred EEcCC
Confidence 88653
No 265
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.36 E-value=1.1e-12 Score=113.96 Aligned_cols=82 Identities=20% Similarity=0.191 Sum_probs=73.9
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
+.++|||.|||..+++++|+++|+.||.|..|.|+.+ .++.+++||||+|.+.++|.+|+..|| +..+ .+++|.|
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~---~g~~l~v 96 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLN-GQDL---MGQPISV 96 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHT-TCBS---SSSBCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC-CCee---CCeEEEE
Confidence 4678999999999999999999999999999999988 488899999999999999999999997 6555 6899999
Q ss_pred ecCCccc
Q psy93 265 EPLELTD 271 (503)
Q Consensus 265 ~~~~~~~ 271 (503)
.++....
T Consensus 97 ~~a~~~~ 103 (126)
T 3ex7_B 97 DWCFVRG 103 (126)
T ss_dssp EESEESS
T ss_pred EEecCCC
Confidence 9986553
No 266
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.36 E-value=7e-13 Score=111.36 Aligned_cols=78 Identities=15% Similarity=0.143 Sum_probs=69.0
Q ss_pred ccccceeccCccc-ccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCC-eeeecCCCCeE
Q psy93 185 PINAAIKVKNLTS-CVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEG-CFFLTQSLRPV 262 (503)
Q Consensus 185 ~~~~~L~V~nLp~-~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g-~~~~~~~~rpl 262 (503)
.+.++|||+|||+ .+++++|+++|++||.|.+|.|+++ ++||||+|++.++|.+|+..|+.. ..+ .+++|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~---~Gr~l 84 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALV---FGKPV 84 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEE---TTEEC
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceE---CCcEE
Confidence 4678999999999 9999999999999999999999876 689999999999999999999832 334 69999
Q ss_pred EeecCCcc
Q psy93 263 IVEPLELT 270 (503)
Q Consensus 263 ~V~~~~~~ 270 (503)
.|.++...
T Consensus 85 ~V~~a~~~ 92 (102)
T 1x4d_A 85 RVHLSQKY 92 (102)
T ss_dssp EEEEECCC
T ss_pred EEEECCCC
Confidence 99987654
No 267
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.3e-12 Score=109.33 Aligned_cols=83 Identities=25% Similarity=0.289 Sum_probs=74.4
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
+.++|||+|||..+++++|+++|+.||.|..+.++.+ .++.+++||||+|.+.++|.+|+..|| +..+ .+++|.|
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-g~~~---~g~~l~v 82 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLN-GREF---SGRALRV 82 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSS-SBSC---SSSCBEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhC-CCee---CCcEEEE
Confidence 3578999999999999999999999999999999988 578899999999999999999999997 6555 6899999
Q ss_pred ecCCcccc
Q psy93 265 EPLELTDE 272 (503)
Q Consensus 265 ~~~~~~~~ 272 (503)
.++.....
T Consensus 83 ~~a~~~~~ 90 (104)
T 1p1t_A 83 DNAASEKN 90 (104)
T ss_dssp EETTCTTH
T ss_pred EeCCCccc
Confidence 99876543
No 268
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=4.6e-12 Score=106.00 Aligned_cols=81 Identities=20% Similarity=0.191 Sum_probs=72.4
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
+.++|||.|||..+++++|+++|+.||.|..|.|+.+ .++.+++||||+|.+.++|.+|+.. +..+ .+++|.|
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~---~~~~---~g~~l~v 87 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ---RHMI---DGRWCDC 87 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS---CEEE---TTEEEEE
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc---CCee---CCeEEEE
Confidence 4678999999999999999999999999999999998 5789999999999999999999983 4444 7899999
Q ss_pred ecCCcccc
Q psy93 265 EPLELTDE 272 (503)
Q Consensus 265 ~~~~~~~~ 272 (503)
.++....+
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqg_A 88 KLPNSKQS 95 (103)
T ss_dssp ECCCTTCC
T ss_pred EecCCCCc
Confidence 99877654
No 269
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.35 E-value=2.1e-12 Score=109.08 Aligned_cols=76 Identities=25% Similarity=0.311 Sum_probs=67.1
Q ss_pred CCCcEEEEcCCCC-----CCCHHHHHHhhccCCCeEEEEEec-------CCCceEEeeCCHHHHHHHHHHhCCccccCce
Q psy93 111 ANNCRLYLGNIGG-----DITENDIIELFKPYGETQELFINK-------EKMFGFIRMDYKHNADKAKAKLDGHVLKGRS 178 (503)
Q Consensus 111 ~~~~~l~V~nLp~-----~~te~~L~~~F~~~G~V~~v~i~~-------~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~ 178 (503)
.++++|+|.||.. +.++++|+++|++||+|.+|.|++ ++|||||+|.+.++|.+|+..|||..+.|++
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3567899999963 237899999999999999999974 3689999999999999999999999999999
Q ss_pred EEEEeccc
Q psy93 179 LKIRFAPI 186 (503)
Q Consensus 179 l~V~~a~~ 186 (503)
|.|.+++.
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999865
No 270
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.35 E-value=1e-12 Score=106.41 Aligned_cols=81 Identities=21% Similarity=0.262 Sum_probs=70.8
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCC-CCC-ceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEE
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGN-SKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVI 263 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~-~g~-skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~ 263 (503)
..++|||+|||..+++++|+++|+.||.|..+.++.+. ++. +++||||+|.+.++|.+|+..|| +..+ .+++|.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~---~g~~l~ 78 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMD-GGQI---DGQEIT 78 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHT-TCEE---TTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcC-CCeE---CCeEEE
Confidence 35789999999999999999999999999999998874 233 78999999999999999999997 6666 689999
Q ss_pred eecCCcc
Q psy93 264 VEPLELT 270 (503)
Q Consensus 264 V~~~~~~ 270 (503)
|.++.+.
T Consensus 79 v~~a~~~ 85 (88)
T 4a8x_A 79 ATAVLAP 85 (88)
T ss_dssp EEEECCC
T ss_pred EEECCCC
Confidence 9887543
No 271
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=1.6e-12 Score=111.37 Aligned_cols=82 Identities=32% Similarity=0.334 Sum_probs=73.5
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEE
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVI 263 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~ 263 (503)
.+.++|||.|||..+++++|+++|+.||.|..|.|+.+ .++.+++||||+|.+.++|.+|+..++ + .+ .+++|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~-~-~~---~g~~l~ 89 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-P-II---DGRKAN 89 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSS-C-EE---TTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCC-C-cC---CCEEEE
Confidence 34689999999999999999999999999999999988 578899999999999999999999997 5 44 689999
Q ss_pred eecCCccc
Q psy93 264 VEPLELTD 271 (503)
Q Consensus 264 V~~~~~~~ 271 (503)
|.++....
T Consensus 90 V~~a~~~~ 97 (116)
T 2cqd_A 90 VNLAYLGA 97 (116)
T ss_dssp EEESTTTC
T ss_pred EEEcccCC
Confidence 99986553
No 272
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.35 E-value=8.5e-13 Score=114.36 Aligned_cols=79 Identities=25% Similarity=0.334 Sum_probs=71.7
Q ss_pred ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEee
Q psy93 187 NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVE 265 (503)
Q Consensus 187 ~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~ 265 (503)
.++|||+|||..+++++|+++|+.||.|..|.|+.+ .++.+++||||+|.+.++|.+|+ .|| +..+ .+++|.|.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~-g~~~---~g~~l~V~ 110 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMD-ETVF---RGRTIKVL 110 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTT-TCEE---TTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcC-CCeE---CCeEEEEE
Confidence 578999999999999999999999999999999988 58899999999999999999999 786 6666 68999999
Q ss_pred cCCcc
Q psy93 266 PLELT 270 (503)
Q Consensus 266 ~~~~~ 270 (503)
++...
T Consensus 111 ~a~~~ 115 (124)
T 2jwn_A 111 PKRTN 115 (124)
T ss_dssp ESSCC
T ss_pred ECCCC
Confidence 87643
No 273
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=1.1e-12 Score=110.14 Aligned_cols=79 Identities=18% Similarity=0.122 Sum_probs=69.2
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEee
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVE 265 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~ 265 (503)
..++|||.|||.++++++|+++|+.||. ..|.|+.+.++++++||||+|.+.++|.+||. +| +..+ .++.|.|.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~-~~~~---~gr~i~V~ 87 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KD-KANM---QHRYVELF 87 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TS-SCCS---SSSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hC-CCeE---CCcEEEEE
Confidence 4678999999999999999999999995 49999999999999999999999999999995 65 6665 67888887
Q ss_pred cCCcc
Q psy93 266 PLELT 270 (503)
Q Consensus 266 ~~~~~ 270 (503)
++...
T Consensus 88 ~~~~~ 92 (102)
T 1wez_A 88 LNSTA 92 (102)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 76544
No 274
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.35 E-value=1.3e-12 Score=112.71 Aligned_cols=80 Identities=16% Similarity=0.077 Sum_probs=72.7
Q ss_pred cccceeccCcccccCHHHHHHHhccCCC---eeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeE
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGD---IERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPV 262 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~---V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl 262 (503)
..++|||+|||.++++++|+++|+.||. |..|.|+.+.+++++|||||+|.+.++|.+||. +| +..+ .+++|
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~-g~~~---~gr~i 90 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KD-RESM---GHRYI 90 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GT-TEEE---TTEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cC-CCeE---CCeEE
Confidence 4578999999999999999999999999 899999999889999999999999999999999 75 7776 68999
Q ss_pred EeecCCcc
Q psy93 263 IVEPLELT 270 (503)
Q Consensus 263 ~V~~~~~~ 270 (503)
.|.++...
T Consensus 91 ~V~~a~~~ 98 (118)
T 2db1_A 91 EVFKSHRT 98 (118)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 99887554
No 275
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.34 E-value=1.2e-12 Score=115.80 Aligned_cols=80 Identities=16% Similarity=0.068 Sum_probs=72.7
Q ss_pred cccceeccCcccccCHHHHHHHhccCCC---eeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeE
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGD---IERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPV 262 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~---V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl 262 (503)
..++|||+|||.++|+++|+++|+.||. |..|.|+.|..++++|||||+|.+.++|.+||. +| +..+ .+++|
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~-g~~l---~gr~i 117 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KD-RESM---GHRYI 117 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TT-EEES---SSSEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cC-CCEE---CCEEE
Confidence 3678999999999999999999999999 899999999779999999999999999999999 86 6666 68999
Q ss_pred EeecCCcc
Q psy93 263 IVEPLELT 270 (503)
Q Consensus 263 ~V~~~~~~ 270 (503)
.|.++...
T Consensus 118 ~V~~a~~~ 125 (136)
T 2hgl_A 118 EVFKSHRT 125 (136)
T ss_dssp EEEECCHH
T ss_pred EEEECChH
Confidence 99987554
No 276
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=2.9e-12 Score=108.40 Aligned_cols=81 Identities=20% Similarity=0.106 Sum_probs=71.2
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
.+.++|||.|||..+++++|+++|+.||.|..|.|..+ +.+++||||+|.+.++|.+|+..|| +..+ .+++|.|
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~-g~~~---~g~~l~V 93 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRD-GYDY---DGYRLRV 93 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHT-TCEE---TTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcC-CCEE---CCeEEEE
Confidence 34679999999999999999999999999999998665 4578999999999999999999997 5555 6899999
Q ss_pred ecCCccc
Q psy93 265 EPLELTD 271 (503)
Q Consensus 265 ~~~~~~~ 271 (503)
.++....
T Consensus 94 ~~a~~~~ 100 (109)
T 1x4a_A 94 EFPRSGR 100 (109)
T ss_dssp ECCCCCC
T ss_pred EEcccCC
Confidence 9987653
No 277
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.34 E-value=8.6e-13 Score=110.15 Aligned_cols=80 Identities=19% Similarity=0.087 Sum_probs=70.0
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCC--CCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeE
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE--RGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPV 262 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~--~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl 262 (503)
...++|||+|||.++++++|+++|+.|| |.+|.|+.+. ++.++|||||+|.+.++|.+|+ .|| +..+ .++.|
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~-g~~~---~g~~l 90 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLN-EESL---GNRRI 90 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTT-TCCB---TTBCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcC-CCEE---CCeEE
Confidence 3468999999999999999999999999 9999999885 7899999999999999999999 887 6555 68889
Q ss_pred EeecCCcc
Q psy93 263 IVEPLELT 270 (503)
Q Consensus 263 ~V~~~~~~ 270 (503)
.|.++...
T Consensus 91 ~V~~a~~~ 98 (100)
T 2j76_E 91 RVDVADQA 98 (100)
T ss_dssp CCEECCCS
T ss_pred EEEeccCC
Confidence 99887654
No 278
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=6.8e-13 Score=107.01 Aligned_cols=78 Identities=18% Similarity=0.191 Sum_probs=67.2
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEE
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVI 263 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~ 263 (503)
.+.++|||.|||..+++++|+++|+.||.|..+.++.+ .++.+++||||+|.+.++|.+|+..|| +..+ .++.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~---~g~~~~ 78 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALK-ASGV---QAQMAK 78 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHH-HHTC---CEESCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhc-CCeE---eeEEEe
Confidence 45789999999999999999999999999999999988 578899999999999999999999998 4444 345454
Q ss_pred eec
Q psy93 264 VEP 266 (503)
Q Consensus 264 V~~ 266 (503)
+.+
T Consensus 79 ~~~ 81 (85)
T 1x4e_A 79 QSG 81 (85)
T ss_dssp SSC
T ss_pred ecC
Confidence 443
No 279
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.34 E-value=8.8e-13 Score=103.74 Aligned_cols=74 Identities=19% Similarity=0.209 Sum_probs=66.5
Q ss_pred ceeccCcccccCHHHHHHHhccCCCeeeeEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeecC
Q psy93 189 AIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPL 267 (503)
Q Consensus 189 ~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~-~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~~ 267 (503)
+|||+|||..+++++|+++|+.||.|..+.++.+. ++.+++||||+|.+.++|.+|+. ++ +..+ .++++.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~-~~~~---~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IH-FHEI---NNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SS-CCCS---SSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CC-CCEE---CCEEEEEEeC
Confidence 58999999999999999999999999999998884 78899999999999999999998 75 6555 6888888764
No 280
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=6.7e-13 Score=113.59 Aligned_cols=82 Identities=17% Similarity=0.173 Sum_probs=74.1
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCe-eeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEE
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDI-ERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVI 263 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V-~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~ 263 (503)
.+.++|||.|||..+++++|+++|+.||.| ..|.|+.|.++.+++||||+|.+.++|.+||.. ++..+ .+++|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~--~~~~~---~gr~i~ 87 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL--HRKKL---NGREAF 87 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG--CSEEE---TTEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh--CCCcc---CCeEEE
Confidence 346789999999999999999999999999 899999998999999999999999999999987 47776 789999
Q ss_pred eecCCccc
Q psy93 264 VEPLELTD 271 (503)
Q Consensus 264 V~~~~~~~ 271 (503)
|.++....
T Consensus 88 v~~a~~~~ 95 (114)
T 2cpy_A 88 VHVVTLED 95 (114)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99987654
No 281
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=2.6e-12 Score=107.11 Aligned_cols=80 Identities=25% Similarity=0.229 Sum_probs=71.0
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
.+.++|||.|||..+++++|+++|+.||.| .++.+.++.+++||||+|.+.++|.+|+..|| +..+ .+++|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~-g~~~---~g~~l~v 85 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCN-KREI---EGRAIRL 85 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTS-SEEE---TTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhC-CCEe---CCeEEEE
Confidence 457899999999999999999999999987 46666788899999999999999999999997 6666 6899999
Q ss_pred ecCCccc
Q psy93 265 EPLELTD 271 (503)
Q Consensus 265 ~~~~~~~ 271 (503)
.++.+..
T Consensus 86 ~~a~~~~ 92 (101)
T 2fc9_A 86 ELQGPRG 92 (101)
T ss_dssp EECSSCC
T ss_pred EEcCCCC
Confidence 9987664
No 282
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.34 E-value=3.7e-13 Score=119.53 Aligned_cols=114 Identities=13% Similarity=0.052 Sum_probs=69.3
Q ss_pred CceEEeeCCHHHHHHHHHHhCCccccCceEEE--------EecccccceeccCcccccCHHHHHHHhccCCCeeeeEEEe
Q psy93 150 MFGFIRMDYKHNADKAKAKLDGHVLKGRSLKI--------RFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIV 221 (503)
Q Consensus 150 g~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V--------~~a~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~ 221 (503)
++||..|..++.+..++..+... ..+...-- .......+|||.|||.++|+++|+++|+.|| |+.|.|+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~ 79 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEI 79 (139)
T ss_dssp --------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCC
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCCCCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEE
Confidence 57888888887777666654332 22221110 0112457899999999999999999999999 77999999
Q ss_pred CCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeecCCcc
Q psy93 222 DERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELT 270 (503)
Q Consensus 222 d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~~~~~ 270 (503)
|.++++++||||+|.+.++|.+|| .+| +..+ .++.|.|.++...
T Consensus 80 d~~g~srGfaFV~F~~~e~A~~Al-~~~-g~~l---~gR~i~V~~a~~~ 123 (139)
T 2hgn_A 80 GPDGRVTGEADVEFATHEEAVAAM-SKD-RANM---QHRYIELFLNSTT 123 (139)
T ss_dssp SSSSCSSCCCEEECSHHHHHHHHT-TCC-SCSS---SSCCCCCEECCCS
T ss_pred CCCCCCceEEEEEeCCHHHHHHHH-hhC-CCEE---CCEEEEEEECCCC
Confidence 988999999999999999999999 675 6655 5788888776554
No 283
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.34 E-value=1.3e-12 Score=110.18 Aligned_cols=79 Identities=20% Similarity=0.289 Sum_probs=70.9
Q ss_pred ccceeccCccccc------CHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCC
Q psy93 187 NAAIKVKNLTSCV------TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLR 260 (503)
Q Consensus 187 ~~~L~V~nLp~~~------tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~r 260 (503)
.++|||+|||..+ ++++|+++|++||.|..|.|+ ..++.++|||||+|.+.++|.+|+..|| +..+ .++
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~-g~~~---~g~ 89 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNAD-GYKL---DKQ 89 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCS-SEEC---STT
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhC-Cccc---CCC
Confidence 5789999999999 789999999999999999888 5678899999999999999999999997 6666 587
Q ss_pred -eEEeecCCcc
Q psy93 261 -PVIVEPLELT 270 (503)
Q Consensus 261 -pl~V~~~~~~ 270 (503)
+|.|.++...
T Consensus 90 ~~l~V~~a~~~ 100 (105)
T 2nlw_A 90 HTFRVNLFTDF 100 (105)
T ss_dssp CEEEEECSCCC
T ss_pred ceEEEEEcchH
Confidence 9999998654
No 284
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.34 E-value=1.1e-12 Score=112.52 Aligned_cols=78 Identities=24% Similarity=0.321 Sum_probs=70.7
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
+.++|||.|||.++++++|+++|+.||.|..|.|+.+ .++.+++||||+|.+.++|.+|+..|| +..+ .++.|.|
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~-g~~~---~g~~l~V 114 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMN-GFQV---GTKRLKV 114 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCC-CCEE---TTEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcC-CCEE---CCEEEEE
Confidence 4578999999999999999999999999999999988 578899999999999999999999997 6555 5888888
Q ss_pred ecC
Q psy93 265 EPL 267 (503)
Q Consensus 265 ~~~ 267 (503)
.++
T Consensus 115 ~~a 117 (118)
T 2khc_A 115 QLK 117 (118)
T ss_dssp EEC
T ss_pred Eec
Confidence 875
No 285
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.34 E-value=9.1e-13 Score=119.22 Aligned_cols=75 Identities=21% Similarity=0.407 Sum_probs=69.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC------CCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
..++|||+|||+++|+++|+++|+.||.|.+|.|..+ +|||||+|.+.++|.+|++ +++..|.|++|.|.|+.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 3578999999999999999999999999999998754 5799999999999999998 89999999999999987
Q ss_pred cc
Q psy93 186 IN 187 (503)
Q Consensus 186 ~~ 187 (503)
+.
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 286
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=1.7e-12 Score=110.22 Aligned_cols=80 Identities=26% Similarity=0.321 Sum_probs=71.5
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEee
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVE 265 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~ 265 (503)
..++|||+|||..+++++|+++|+.||.|..|.++.+.. .+++||||+|.+.++|.+|+..|| +..+ .+++|.|.
T Consensus 28 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~-g~~~---~g~~l~V~ 102 (109)
T 2err_A 28 QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLH-GTVV---EGRKIEVN 102 (109)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHT-TCEE---TTEECEEE
T ss_pred CCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcC-CCEE---CCEEEEEE
Confidence 367899999999999999999999999999999998854 479999999999999999999997 6655 68999999
Q ss_pred cCCcc
Q psy93 266 PLELT 270 (503)
Q Consensus 266 ~~~~~ 270 (503)
++...
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 87653
No 287
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=1.7e-12 Score=109.12 Aligned_cols=80 Identities=19% Similarity=0.196 Sum_probs=70.7
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeee-eEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIER-AIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~-~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
..++|||+|||..+++++|+++|+.||.|.. |.|+.+.++.++|||||+|.+.++|.+||.. + +..+ .++.|.|
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~-~~~~---~gr~i~v 88 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-H-KERI---GHRYIEI 88 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-T-TCCS---SSSCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-C-cchh---CCcEEEE
Confidence 4678999999999999999999999999987 8888888999999999999999999999997 5 6665 6788888
Q ss_pred ecCCcc
Q psy93 265 EPLELT 270 (503)
Q Consensus 265 ~~~~~~ 270 (503)
.++...
T Consensus 89 ~~~~~~ 94 (104)
T 1wg5_A 89 FKSSRA 94 (104)
T ss_dssp EEECTT
T ss_pred EECCHH
Confidence 776543
No 288
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.33 E-value=9.7e-13 Score=103.86 Aligned_cols=75 Identities=20% Similarity=0.278 Sum_probs=67.5
Q ss_pred cceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeec
Q psy93 188 AAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEP 266 (503)
Q Consensus 188 ~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~ 266 (503)
++|||+|||..+++++|+++|++||.|..+.++.+ .++.+++||||+|.+.++|.+|+..++ ..+ .++++.|++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~--~~~---~g~~l~v~~ 75 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR--HEL---DSKTIDPKV 75 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT--CCC---SSCCCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC--Ccc---CCEEEEEEe
Confidence 47999999999999999999999999999999988 468899999999999999999999986 333 688888877
Q ss_pred C
Q psy93 267 L 267 (503)
Q Consensus 267 ~ 267 (503)
+
T Consensus 76 a 76 (77)
T 1uaw_A 76 A 76 (77)
T ss_dssp C
T ss_pred c
Confidence 5
No 289
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=2.2e-12 Score=109.71 Aligned_cols=78 Identities=17% Similarity=0.228 Sum_probs=70.5
Q ss_pred ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeec
Q psy93 187 NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEP 266 (503)
Q Consensus 187 ~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~ 266 (503)
..+|||+|||.++++++|+++|+.| .|..|.|+.|.+++++|||||+|.+.++|.+|| .+| +..+ .++.|.|.+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~-~~~~---~gr~i~V~~ 89 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRN-RMLM---IQRYVEVSP 89 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTT-TEEE---TTEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcC-CCeE---CCeEEEEEE
Confidence 4689999999999999999999999 899999999988999999999999999999999 575 7776 689999988
Q ss_pred CCcc
Q psy93 267 LELT 270 (503)
Q Consensus 267 ~~~~ 270 (503)
+...
T Consensus 90 a~~~ 93 (109)
T 2dnn_A 90 ATER 93 (109)
T ss_dssp CCHH
T ss_pred CCcc
Confidence 7544
No 290
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.33 E-value=1.2e-12 Score=111.62 Aligned_cols=80 Identities=19% Similarity=0.287 Sum_probs=69.2
Q ss_pred cccccceeccCcccc-cCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhC-CeeeecCCCCe
Q psy93 184 APINAAIKVKNLTSC-VTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAE-GCFFLTQSLRP 261 (503)
Q Consensus 184 a~~~~~L~V~nLp~~-~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~-g~~~~~~~~rp 261 (503)
..+.++|||+|||++ +++++|+++|+.||.|.+|.|++. ++||||+|.+.++|.+|+..|+. +..+ .+++
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~l---~Gr~ 93 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM-----KSQAFIEMETREDAMAMVDHCLKKALWF---QGRC 93 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHHHSCCCS---SSSC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC-----CCEEEEEECCHHHHHHHHHHhccCCceE---CCEE
Confidence 346789999999998 999999999999999999999754 78999999999999999999872 3333 6899
Q ss_pred EEeecCCccc
Q psy93 262 VIVEPLELTD 271 (503)
Q Consensus 262 l~V~~~~~~~ 271 (503)
|.|.++....
T Consensus 94 l~V~~a~~~~ 103 (112)
T 1x4f_A 94 VKVDLSEKYK 103 (112)
T ss_dssp CEEEEECSCS
T ss_pred EEEEECcccc
Confidence 9999976553
No 291
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=3.5e-12 Score=109.16 Aligned_cols=81 Identities=19% Similarity=0.182 Sum_probs=73.6
Q ss_pred ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEee
Q psy93 187 NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVE 265 (503)
Q Consensus 187 ~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~ 265 (503)
.++|||.|||..+++++|+++|+.||.|..|.|+.+ .++.+++||||+|.+.++|.+||.. + +..+ .++.|.|.
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~-~~~~---~g~~l~V~ 101 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-R-PHSI---DGRVVEPK 101 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-C-SEEE---TTEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-C-CcEE---CCEEEEEE
Confidence 578999999999999999999999999999999998 5688999999999999999999987 4 7766 78999999
Q ss_pred cCCcccc
Q psy93 266 PLELTDE 272 (503)
Q Consensus 266 ~~~~~~~ 272 (503)
++.+...
T Consensus 102 ~a~~~~~ 108 (116)
T 1x4b_A 102 RAVAREE 108 (116)
T ss_dssp CCSSCCC
T ss_pred ECCCCcc
Confidence 9877654
No 292
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.32 E-value=3.2e-12 Score=105.84 Aligned_cols=79 Identities=16% Similarity=0.119 Sum_probs=68.9
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
++.++|||.|||..+++++|+++|+.||.|..|.++.+ ++||||+|.+.++|.+|+..|| +..+ ...+++|.|
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~-g~~~-~~~g~~l~V 87 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMR-GFPL-GGPDRRLRV 87 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHT-TCBC-SSSSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHC-CCEe-CCCCcEEEE
Confidence 45789999999999999999999999999999998765 7899999999999999999997 5555 112789999
Q ss_pred ecCCcc
Q psy93 265 EPLELT 270 (503)
Q Consensus 265 ~~~~~~ 270 (503)
.++.+.
T Consensus 88 ~~a~~~ 93 (97)
T 1why_A 88 DFAKSG 93 (97)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 998665
No 293
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=1.2e-12 Score=111.78 Aligned_cols=80 Identities=21% Similarity=0.242 Sum_probs=72.0
Q ss_pred ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEee
Q psy93 187 NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVE 265 (503)
Q Consensus 187 ~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~-~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~ 265 (503)
.++|||.|||..+++++|+++|+.||.|..|.|+.+. ++.+++||||+|.+.++|.+|+ .|| +..+ .+++|.|.
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~-g~~~---~g~~l~V~ 99 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLT-GQRL---LGVPIIVQ 99 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHT-TEEE---TTEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcC-CCEe---CCeEEEEE
Confidence 4689999999999999999999999999999999884 5889999999999999999999 886 7766 68999999
Q ss_pred cCCccc
Q psy93 266 PLELTD 271 (503)
Q Consensus 266 ~~~~~~ 271 (503)
++....
T Consensus 100 ~a~~~~ 105 (114)
T 2cq4_A 100 ASQAEK 105 (114)
T ss_dssp EHHHHH
T ss_pred ecCCCc
Confidence 876543
No 294
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.32 E-value=4.4e-12 Score=107.32 Aligned_cols=76 Identities=24% Similarity=0.186 Sum_probs=67.9
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCC-----C
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSL-----R 260 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~-----r 260 (503)
..++|||.|||..+++++|+++|+.||.|..|.|+.+ +||||+|.+.++|.+||..|| +..+ .+ +
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~-g~~~---~g~~~~~~ 83 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLD-NTKF---RSHEGETA 83 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSS-SEEE---ECTTSCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHC-cCCc---cCCcCcce
Confidence 4678999999999999999999999999999999876 799999999999999999997 6665 35 8
Q ss_pred eEEeecCCccc
Q psy93 261 PVIVEPLELTD 271 (503)
Q Consensus 261 pl~V~~~~~~~ 271 (503)
+|.|.++.+..
T Consensus 84 ~i~V~~a~~~~ 94 (108)
T 1x4c_A 84 YIRVKVDGPRS 94 (108)
T ss_dssp EEEEEESSCCS
T ss_pred EEEEEeCCCCC
Confidence 89999987643
No 295
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.32 E-value=8.3e-13 Score=115.87 Aligned_cols=84 Identities=20% Similarity=0.140 Sum_probs=72.3
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeee--eEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHhhCCe-eeecCCCCe
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIER--AIVIVDE-RGNSKCEGIVEFARKPAAAQALRRCAEGC-FFLTQSLRP 261 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~--~~v~~d~-~g~skg~gfV~F~s~e~A~kAl~~ln~g~-~~~~~~~rp 261 (503)
+.++|||+|||..+++++|+++|+.||.|.. |+|+.|. ++.++|||||+|.+. +|.+|+..|| +. ..+...+++
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~-g~~~~~~~~gr~ 99 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQ-ALHPPLTIDGKT 99 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHT-TCCCSCCGGGCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhc-CCCCCccCCCEE
Confidence 4678999999999999999999999999977 9999985 899999999999999 9999999998 44 111226889
Q ss_pred EEeecCCccc
Q psy93 262 VIVEPLELTD 271 (503)
Q Consensus 262 l~V~~~~~~~ 271 (503)
|.|.++.+..
T Consensus 100 l~V~~a~~~~ 109 (131)
T 2m2b_A 100 INVEFAKGSK 109 (131)
T ss_dssp CCCEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999887653
No 296
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.32 E-value=1.6e-12 Score=118.76 Aligned_cols=77 Identities=22% Similarity=0.313 Sum_probs=68.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEE-ecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecccc
Q psy93 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-NKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPIN 187 (503)
Q Consensus 111 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i-~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~~ 187 (503)
...++|||+|||+++|+++|+++|+.||.|..+.. ..+++||||+|.+.++|.+|+..||+..|.|++|.|.|+.+.
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 35689999999999999999999999999988711 135899999999999999999999999999999999998653
No 297
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.32 E-value=3.7e-12 Score=108.15 Aligned_cols=82 Identities=18% Similarity=0.222 Sum_probs=71.4
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEE
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVI 263 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~ 263 (503)
.+.++|||+|||..+++++|+++|+.||.|..|.|+.+ .++.++|||||+|.+.++|.+|+..+ +..+ .++.|.
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~--~~~l---~g~~l~ 97 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS--RHEL---DSKTID 97 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS--CEEE---TTEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC--CCcC---CCEEEE
Confidence 45789999999999999999999999999999999988 46899999999999999999999986 3555 689999
Q ss_pred eecCCccc
Q psy93 264 VEPLELTD 271 (503)
Q Consensus 264 V~~~~~~~ 271 (503)
|.++....
T Consensus 98 V~~a~~~~ 105 (109)
T 2rs2_A 98 PKVAFPRR 105 (109)
T ss_dssp EEECCCCC
T ss_pred EEEccCCC
Confidence 99887653
No 298
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.32 E-value=2.2e-12 Score=121.00 Aligned_cols=74 Identities=24% Similarity=0.253 Sum_probs=66.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEec-----CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINK-----EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI 186 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~-----~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~ 186 (503)
..++|||+|||+++|+++|+++|+.||+|.+|.|++ ++|||||+|.+.++|.+|+..+ +..|.|++|.|.++..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 357899999999999999999999999999999975 4789999999999999999865 4589999999998753
No 299
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.32 E-value=1e-12 Score=105.23 Aligned_cols=72 Identities=22% Similarity=0.333 Sum_probs=62.7
Q ss_pred cceeccCccccc------CHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCC-
Q psy93 188 AAIKVKNLTSCV------TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLR- 260 (503)
Q Consensus 188 ~~L~V~nLp~~~------tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~r- 260 (503)
++|||+|||..+ ++++|+++|++||.|..+.++ ..++.++|||||+|.+.++|.+|+..|| +..+ .++
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~ln-g~~~---~g~~ 76 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNAD-GYKL---DKQH 76 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSS-SCCC---SSSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhc-Cccc---CCce
Confidence 689999999999 679999999999999999887 5678899999999999999999999997 5555 455
Q ss_pred eEEe
Q psy93 261 PVIV 264 (503)
Q Consensus 261 pl~V 264 (503)
+|.|
T Consensus 77 ~l~V 80 (81)
T 2krb_A 77 TFRV 80 (81)
T ss_dssp CCCC
T ss_pred eEEe
Confidence 5544
No 300
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=3.2e-12 Score=102.95 Aligned_cols=74 Identities=22% Similarity=0.208 Sum_probs=66.7
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEee
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVE 265 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~ 265 (503)
+.++|||.|||..+++++|+++|++||.|..+.++.+ ++||||+|.+.++|.+|+..|+++..+ .+++|.|.
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~~---~g~~l~v~ 82 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLIV---NGRRLNVK 82 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCEE---TTEECCEE
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCeeE---CCCEEEEE
Confidence 4679999999999999999999999999999999875 789999999999999999998447666 58888888
Q ss_pred cC
Q psy93 266 PL 267 (503)
Q Consensus 266 ~~ 267 (503)
++
T Consensus 83 ~a 84 (85)
T 2ytc_A 83 WG 84 (85)
T ss_dssp EC
T ss_pred ec
Confidence 76
No 301
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.31 E-value=2e-12 Score=110.29 Aligned_cols=86 Identities=17% Similarity=0.076 Sum_probs=68.1
Q ss_pred ceEEEEecc---cccceeccCcccccCHHHHHHHhccCC-CeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCe
Q psy93 177 RSLKIRFAP---INAAIKVKNLTSCVTNELLELAFGVFG-DIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGC 252 (503)
Q Consensus 177 ~~l~V~~a~---~~~~L~V~nLp~~~tee~L~~~Fs~~G-~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~ 252 (503)
.++.+.+.. ..++|||+|||.++++++|+++|+.|| .|..+.|+.+ .++|||||+|.+.++|.+|+..|| +.
T Consensus 15 ~~~~~~~~~~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~ln-g~ 90 (111)
T 2jvr_A 15 VPRGSHMSKLPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLN-NI 90 (111)
T ss_dssp ----------CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTT-TE
T ss_pred eecchhcCCCCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcC-CC
Confidence 345555553 357899999999999999999999999 8999888643 468999999999999999999997 77
Q ss_pred eeecCCCCeEEeecCCc
Q psy93 253 FFLTQSLRPVIVEPLEL 269 (503)
Q Consensus 253 ~~~~~~~rpl~V~~~~~ 269 (503)
.+ .+++|.|.++..
T Consensus 91 ~l---~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 91 EF---RGSVITVERDDN 104 (111)
T ss_dssp EE---TTEEEEEEESCC
T ss_pred EE---CCeEEEEEECCC
Confidence 66 799999988643
No 302
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=6.7e-12 Score=102.38 Aligned_cols=77 Identities=21% Similarity=0.200 Sum_probs=68.4
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
.+.++|||+|||..+++++|+++|+.||.|..+.++ ++||||+|.+.++|.+|+..|| +..+ .+++|.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~-g~~~---~g~~l~v 74 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLH-HYKL---HGVNINV 74 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHT-TCBC---SSCBCEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhc-CCcc---CCcEEEE
Confidence 356899999999999999999999999999999987 5699999999999999999997 5555 6899999
Q ss_pred ecCCcccc
Q psy93 265 EPLELTDE 272 (503)
Q Consensus 265 ~~~~~~~~ 272 (503)
.++.....
T Consensus 75 ~~a~~~~~ 82 (90)
T 2dnq_A 75 EASKNKSK 82 (90)
T ss_dssp ECSSCCCC
T ss_pred EECCCCCC
Confidence 99876644
No 303
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.31 E-value=3.1e-12 Score=118.82 Aligned_cols=117 Identities=15% Similarity=0.142 Sum_probs=94.0
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEE
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVI 263 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~ 263 (503)
...++|||+|||.++++++|+++|+.||.|.+|.|+.+ .++.+++||||+|.+.++|.+|+.. + +..+ .++++.
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~-~~~~---~g~~l~ 85 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-R-PHKV---DGRVVE 85 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-C-SCEE---TTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-C-CCEE---CCEEee
Confidence 34679999999999999999999999999999999998 4788999999999999999999976 3 5555 688999
Q ss_pred eecCCccccccC-----CcccccCCCCchhhhhhccCcccCCCCCcch
Q psy93 264 VEPLELTDEIDG-----LSERTINKKTPEFYKQRQVGPRFATVNSFEF 306 (503)
Q Consensus 264 V~~~~~~~~~~~-----~~~k~i~k~~~~~~kere~~~rf~~~g~~e~ 306 (503)
|.++........ ....++..+++...++.++...|..+|.+..
T Consensus 86 v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~ 133 (196)
T 1l3k_A 86 PKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133 (196)
T ss_dssp EEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEE
T ss_pred eecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEE
Confidence 988766533221 1234566678887888888899999987753
No 304
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.30 E-value=3.2e-12 Score=111.71 Aligned_cols=82 Identities=18% Similarity=0.243 Sum_probs=70.2
Q ss_pred ccccceeccCcccccCHHHHH----HHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCC
Q psy93 185 PINAAIKVKNLTSCVTNELLE----LAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLR 260 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~----~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~r 260 (503)
.+.++|||+|||+.+++++|+ ++|++||.|.+|.+.. ++.++|||||+|.+.++|.+|+..|| +..+ .++
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~--~~~~rG~aFV~F~~~~~A~~Ai~~ln-g~~l---~gr 100 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL--SDDNSGKAYIVFATQESAQAFVEAFQ-GYPF---QGN 100 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC--CCSSCCCEEEEESSHHHHHHHHHHST-TCCC---TTS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc--CCCcCCEEEEEECCHHHHHHHHHHHC-CCEe---CCC
Confidence 456899999999999998866 6999999999887753 57789999999999999999999997 5555 589
Q ss_pred eEEeecCCcccc
Q psy93 261 PVIVEPLELTDE 272 (503)
Q Consensus 261 pl~V~~~~~~~~ 272 (503)
+|.|.++....+
T Consensus 101 ~l~V~~a~~~~~ 112 (127)
T 2a3j_A 101 PLVITFSETPQS 112 (127)
T ss_dssp CCEEEECCCCCH
T ss_pred EEEEEEccCcch
Confidence 999999876543
No 305
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=5.7e-12 Score=106.68 Aligned_cols=79 Identities=23% Similarity=0.278 Sum_probs=70.7
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
.+.++|||+|||..+++++|+++|+.||.|..|.++.+ ++||||+|.+.++|.+|+..|+ +..+ .+++|.|
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~-g~~~---~g~~l~v 93 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVN-GTTI---EGHVVKC 93 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHT-TCEE---TTEECEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcC-CCEE---CCcEEEE
Confidence 34679999999999999999999999999999999887 7899999999999999999997 6655 6899999
Q ss_pred ecCCcccc
Q psy93 265 EPLELTDE 272 (503)
Q Consensus 265 ~~~~~~~~ 272 (503)
.++.....
T Consensus 94 ~~a~~~~~ 101 (109)
T 1x4g_A 94 YWGKESPD 101 (109)
T ss_dssp ECCCCCCS
T ss_pred EecCCCCC
Confidence 99876643
No 306
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.30 E-value=2.3e-12 Score=124.09 Aligned_cols=80 Identities=21% Similarity=0.198 Sum_probs=71.5
Q ss_pred cccceeccCcccccCHHHHHHHhccCC--CeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeE
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFG--DIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPV 262 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G--~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl 262 (503)
..++|||.||+..+|+++|+++|+.|| .|..|.|+.| .++.+++||||+|.+.++|.+||..|| +..+ .++.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~ln-g~~~---~Gr~l 142 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLP-KREL---HGQNP 142 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTST-TSCB---TTBCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC-CCeE---CCEEe
Confidence 467899999999999999999999999 9999999999 589999999999999999999999997 6555 68899
Q ss_pred EeecCCc
Q psy93 263 IVEPLEL 269 (503)
Q Consensus 263 ~V~~~~~ 269 (503)
.|.++..
T Consensus 143 ~V~~a~~ 149 (229)
T 3q2s_C 143 VVTPVNK 149 (229)
T ss_dssp EEEECCH
T ss_pred EEEECCC
Confidence 9988643
No 307
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.30 E-value=1.9e-12 Score=111.94 Aligned_cols=74 Identities=18% Similarity=0.231 Sum_probs=64.7
Q ss_pred cEEEEcCC----CCCCCHHHHHHhhccCCCeEEEEEec------CCCceEEeeCC----HHH----HHHHHH--HhCCcc
Q psy93 114 CRLYLGNI----GGDITENDIIELFKPYGETQELFINK------EKMFGFIRMDY----KHN----ADKAKA--KLDGHV 173 (503)
Q Consensus 114 ~~l~V~nL----p~~~te~~L~~~F~~~G~V~~v~i~~------~kg~aFV~F~~----~e~----A~~Ai~--~l~g~~ 173 (503)
+.|||+|| |+.|++.+|+++|+.||+|.+|.++. ++|||||+|.+ +++ |.+||. .|++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 99999999999999999999999974 47999999996 433 888988 789999
Q ss_pred ccCceEEEEecccc
Q psy93 174 LKGRSLKIRFAPIN 187 (503)
Q Consensus 174 l~g~~l~V~~a~~~ 187 (503)
|.|++|+|.+.+.+
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999987654
No 308
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.29 E-value=5.2e-12 Score=111.37 Aligned_cols=78 Identities=26% Similarity=0.272 Sum_probs=70.7
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
+.++|||+|||..+++++|+++|+.||.|..+.|+.+ .++.+++||||+|.+.++|.+|+..|| +..+ .+++|.|
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~---~g~~l~v 137 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN-ESEL---FGRTIRV 137 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHST-EEEE---TTEEEEE
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhC-CCEE---CCEEEEE
Confidence 4679999999999999999999999999999999988 678899999999999999999999997 6666 6889998
Q ss_pred ecC
Q psy93 265 EPL 267 (503)
Q Consensus 265 ~~~ 267 (503)
.++
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 864
No 309
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=1.8e-12 Score=112.56 Aligned_cols=80 Identities=21% Similarity=0.232 Sum_probs=70.1
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEE-EeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIV-IVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v-~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
..++|||.|||..+++++|+++|+.||.|..+.+ ..+.++.++|||||+|.+.++|.+||. || +..+ .+++|.|
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~-g~~~---~gr~i~V 98 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RH-KQYM---GNRFIQV 98 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SC-SBCS---TTSCBEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hC-CCeE---CCcEEEE
Confidence 4579999999999999999999999999998544 445789999999999999999999999 86 6666 6899999
Q ss_pred ecCCcc
Q psy93 265 EPLELT 270 (503)
Q Consensus 265 ~~~~~~ 270 (503)
.++...
T Consensus 99 ~~a~~~ 104 (124)
T 1wel_A 99 HPITKK 104 (124)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 887654
No 310
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.29 E-value=4e-12 Score=105.63 Aligned_cols=78 Identities=17% Similarity=0.143 Sum_probs=69.5
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
.+.++|||.|||..+++++|+++|+.||.|..|.++.+ ++||||+|.+.++|.+|+..|+ +..+ .+++|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~-g~~~---~g~~l~v 83 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELD-NMPL---RGKQLRV 83 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHT-TCCB---TTBCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhC-CCEe---CCceEEE
Confidence 35679999999999999999999999999999999865 7899999999999999999997 5555 5899999
Q ss_pred ecCCccc
Q psy93 265 EPLELTD 271 (503)
Q Consensus 265 ~~~~~~~ 271 (503)
.++.+..
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpj_A 84 RFACHSA 90 (99)
T ss_dssp EESSCCS
T ss_pred EEcCCCC
Confidence 9987653
No 311
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.29 E-value=1.5e-12 Score=110.10 Aligned_cols=80 Identities=15% Similarity=0.118 Sum_probs=71.6
Q ss_pred cccceeccCcccccCHHHHHHHhccCCC---eeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeE
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGD---IERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPV 262 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~---V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl 262 (503)
..++|||+|||.++++++|+++|+.||. |..|.|+.+..+.++|||||+|.+.++|.+||. ++ +..+ .++.|
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~-~~~~---~gr~i 84 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KH-RMYM---GQRYV 84 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TT-TCCS---SSSCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hC-ccee---CCeEE
Confidence 4678999999999999999999999998 899999999779999999999999999999999 76 6655 68888
Q ss_pred EeecCCcc
Q psy93 263 IVEPLELT 270 (503)
Q Consensus 263 ~V~~~~~~ 270 (503)
.|.++...
T Consensus 85 ~V~~a~~~ 92 (107)
T 2lmi_A 85 EVYEINNE 92 (107)
T ss_dssp CCEECCHH
T ss_pred EEEECCHH
Confidence 88887654
No 312
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.28 E-value=5.8e-12 Score=107.53 Aligned_cols=82 Identities=21% Similarity=0.215 Sum_probs=72.0
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
.++++|||+|||..+++++|+++|+.||.|..|.++.+ +.+++||||+|.+.++|.+|+..|| +..+ .+++|.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~-g~~~---~g~~l~v 79 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLS-GFNV---SNRYLVV 79 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHT-TCBS---SSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcC-CCEE---CCeEEEE
Confidence 35789999999999999999999999999999999876 4558999999999999999999997 6555 6899999
Q ss_pred ecCCcccc
Q psy93 265 EPLELTDE 272 (503)
Q Consensus 265 ~~~~~~~~ 272 (503)
.++.+...
T Consensus 80 ~~a~~~~~ 87 (115)
T 3lqv_A 80 LYYNANRA 87 (115)
T ss_dssp EECCHHHH
T ss_pred EEecCChh
Confidence 99876543
No 313
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.28 E-value=4.5e-12 Score=105.66 Aligned_cols=76 Identities=24% Similarity=0.210 Sum_probs=68.5
Q ss_pred cceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeecC
Q psy93 188 AAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPL 267 (503)
Q Consensus 188 ~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~~ 267 (503)
++|||+|||..+++++|+++|+.||.|..|.++.+ +++||||+|.+.++|.+|+..|+ +..+ .+++|.|.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~-g~~~---~g~~l~V~~a 72 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLD-GKVI---CGSRVRVELS 72 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHH-HSCS---SSCCCEEEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHC-CCeE---CCcEEEEEEc
Confidence 47999999999999999999999999999999887 68899999999999999999998 4444 6888999998
Q ss_pred Cccc
Q psy93 268 ELTD 271 (503)
Q Consensus 268 ~~~~ 271 (503)
....
T Consensus 73 ~~~~ 76 (101)
T 2hvz_A 73 TGMP 76 (101)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 7764
No 314
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.28 E-value=1.1e-12 Score=106.99 Aligned_cols=79 Identities=25% Similarity=0.300 Sum_probs=68.4
Q ss_pred cceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeec
Q psy93 188 AAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEP 266 (503)
Q Consensus 188 ~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~ 266 (503)
++|||+|||..+++++|+++|+.||.|..+.++.+ .++.+++||||+|.+.+ |.+|+..|| +..+ .+++|.|.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~-g~~~---~g~~l~V~~ 76 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLD-NTDF---MGRTIRVTE 76 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSC-SSCC---SSSSCSEEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhC-CCEE---CCeEEEEEE
Confidence 47999999999999999999999999999999988 46889999999999999 999999997 5555 588999998
Q ss_pred CCccc
Q psy93 267 LELTD 271 (503)
Q Consensus 267 ~~~~~ 271 (503)
+....
T Consensus 77 a~~~~ 81 (90)
T 2ki2_A 77 ANPKK 81 (90)
T ss_dssp C----
T ss_pred cCCCC
Confidence 76653
No 315
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=2.7e-12 Score=111.56 Aligned_cols=80 Identities=20% Similarity=0.216 Sum_probs=69.8
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCe----eeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCe
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDI----ERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRP 261 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V----~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rp 261 (503)
...+|||+|||.++|+++|+++|+.||.| ..|.|+.+.+++++|||||+|.+.++|.+||.. | +..+ .++.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~-~~~l---~gR~ 96 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-H-KDLL---GKRY 96 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-T-TEES---SSCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-C-CCee---CCeE
Confidence 45789999999999999999999999975 689999998999999999999999999999986 4 6666 5788
Q ss_pred EEeecCCcc
Q psy93 262 VIVEPLELT 270 (503)
Q Consensus 262 l~V~~~~~~ 270 (503)
|.|.++...
T Consensus 97 i~V~~a~~~ 105 (123)
T 2dha_A 97 IELFRSTAA 105 (123)
T ss_dssp ECCEEECHH
T ss_pred EEEEECCHH
Confidence 888776443
No 316
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=1.4e-11 Score=100.86 Aligned_cols=76 Identities=20% Similarity=0.250 Sum_probs=68.2
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
.+.++|||+|||..+++++|+++|+.||.|..|.++++ ||||+|.+.++|.+|+..|| +..+ .+++|.|
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~-------~afV~f~~~~~a~~A~~~l~-g~~~---~g~~l~V 76 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD-------YAFVHMERAEDAVEAIRGLD-NTEF---QGKRMHV 76 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS-------EEEEEESCHHHHHHHHHHHT-TEEE---TTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC-------EEEEEECCHHHHHHHHHHhC-CCee---CCcEEEE
Confidence 35689999999999999999999999999999998754 99999999999999999997 6666 6899999
Q ss_pred ecCCccc
Q psy93 265 EPLELTD 271 (503)
Q Consensus 265 ~~~~~~~ 271 (503)
.++....
T Consensus 77 ~~a~~~~ 83 (92)
T 2dgt_A 77 QLSTSRL 83 (92)
T ss_dssp EESSCCC
T ss_pred EEccCCC
Confidence 9987654
No 317
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.28 E-value=4.9e-12 Score=116.97 Aligned_cols=82 Identities=26% Similarity=0.356 Sum_probs=74.6
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
.+.++|||.|||..+++++|+++|+.||.|..|.|+.+.++.+++||||+|.+.++|.+|+..|| +..+ .+++|.|
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~ln-g~~l---~Gr~l~V 161 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYK-GVPL---DGRPMDI 161 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHST-TCBC---SSSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhC-CCEE---CCEEEEE
Confidence 45689999999999999999999999999999999998888999999999999999999999997 5555 6899999
Q ss_pred ecCCcc
Q psy93 265 EPLELT 270 (503)
Q Consensus 265 ~~~~~~ 270 (503)
.++...
T Consensus 162 ~~a~~~ 167 (177)
T 2f3j_A 162 QLVASQ 167 (177)
T ss_dssp EEESSG
T ss_pred EEecCC
Confidence 987654
No 318
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.27 E-value=5.9e-12 Score=104.95 Aligned_cols=75 Identities=17% Similarity=0.023 Sum_probs=66.9
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEee
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVE 265 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~ 265 (503)
..++|||+|||..+++++|+++|+.||.|.++.+.. +++||||+|.+.++|.+|+..|| +..+ .++.|.|.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~-g~~~---~g~~l~V~ 96 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----EKGCCFIKYDTHEQAAVCIVALA-NFPF---QGRNLRTG 96 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHT-TCEE---TTEECCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhC-CCeE---CCeEEEEE
Confidence 357899999999999999999999999999999884 48899999999999999999997 6666 58889998
Q ss_pred cCCc
Q psy93 266 PLEL 269 (503)
Q Consensus 266 ~~~~ 269 (503)
++.+
T Consensus 97 ~a~~ 100 (101)
T 2la4_A 97 WGKE 100 (101)
T ss_dssp BCCC
T ss_pred eccC
Confidence 8754
No 319
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.27 E-value=3.6e-12 Score=120.66 Aligned_cols=73 Identities=16% Similarity=0.195 Sum_probs=65.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCe--EEEEEecC----CCceEEeeCCHHHHHHHHHHhCCccccCc----eEEE
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGET--QELFINKE----KMFGFIRMDYKHNADKAKAKLDGHVLKGR----SLKI 181 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V--~~v~i~~~----kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~----~l~V 181 (503)
++++|||+|||+++|+++|+++|++||.| .+|++..+ ++||||+|.+.++|.+||..||+..|.+. ++.|
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~v 201 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTL 201 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEEC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEE
Confidence 45689999999999999999999999999 89998754 48999999999999999999999999875 6777
Q ss_pred Eec
Q psy93 182 RFA 184 (503)
Q Consensus 182 ~~a 184 (503)
+++
T Consensus 202 k~~ 204 (205)
T 3tyt_A 202 KLC 204 (205)
T ss_dssp EEE
T ss_pred Eec
Confidence 764
No 320
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.27 E-value=1.1e-11 Score=103.73 Aligned_cols=76 Identities=25% Similarity=0.332 Sum_probs=68.1
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEee
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVE 265 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~ 265 (503)
+.++|||.|||..+++++|+++|+.||.|..|.+++ +||||+|.+.++|.+|+..|| +..+ .+++|.|.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~-------~~afV~f~~~~~a~~A~~~l~-g~~~---~g~~l~v~ 78 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK-------DYAFIHFDERDGAVKAMEEMN-GKDL---EGENIEIV 78 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS-------SCEEEEESSHHHHHHHHHHHT-TEEE---TTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-------CEEEEEeCCHHHHHHHHHHHC-CCcc---CCCEEEEE
Confidence 467999999999999999999999999999998874 499999999999999999997 6666 68999999
Q ss_pred cCCcccc
Q psy93 266 PLELTDE 272 (503)
Q Consensus 266 ~~~~~~~ 272 (503)
++.+...
T Consensus 79 ~a~~~~~ 85 (103)
T 2dgu_A 79 FAKPPDQ 85 (103)
T ss_dssp ECCCCCC
T ss_pred EcCCCcc
Confidence 9877644
No 321
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=1.1e-11 Score=101.20 Aligned_cols=76 Identities=20% Similarity=0.150 Sum_probs=68.0
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
.+.++|||+|||..+++++|+++|+.||.|..+.++++ ||||+|.+.++|.+|+..|| +..+ .+++|.|
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~-------~afV~f~~~~~a~~A~~~l~-g~~~---~g~~l~v 75 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD-------YAFVHMEKEADAKAAIAQLN-GKEV---KGKRINV 75 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS-------CEEEEESCHHHHHHHHHHHT-TCEE---TTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC-------EEEEEECCHHHHHHHHHHhC-CCEE---CCcEEEE
Confidence 35689999999999999999999999999999999754 99999999999999999997 6655 6899999
Q ss_pred ecCCccc
Q psy93 265 EPLELTD 271 (503)
Q Consensus 265 ~~~~~~~ 271 (503)
.++....
T Consensus 76 ~~a~~~~ 82 (90)
T 2dnp_A 76 ELSTKGQ 82 (90)
T ss_dssp EESCCCC
T ss_pred EECCCCC
Confidence 9987654
No 322
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.26 E-value=2.5e-11 Score=113.80 Aligned_cols=109 Identities=13% Similarity=-0.007 Sum_probs=89.1
Q ss_pred CHHHHHHHHHHh--CCccccCceEEEEecc---------------cccceeccCcccccCHHHHHHHhccCCCeeeeEEE
Q psy93 158 YKHNADKAKAKL--DGHVLKGRSLKIRFAP---------------INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVI 220 (503)
Q Consensus 158 ~~e~A~~Ai~~l--~g~~l~g~~l~V~~a~---------------~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~ 220 (503)
+.+.+..|+... ....+.+..+.|...+ ..++|||+|||..+++++|.++|+.||.|..|.|+
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 667778888776 4556666555665542 13689999999999999999999999999999999
Q ss_pred eCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeecCCccc
Q psy93 221 VDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTD 271 (503)
Q Consensus 221 ~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~~~~~~ 271 (503)
.+.++.++|||||+|.+.++|.+|+..++ . .+ .+++|.|.+.....
T Consensus 143 ~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~-~~---~Gr~l~V~~~~~y~ 188 (193)
T 2voo_A 143 RTLHKAFKGSIFVVFDSIESAKKFVETPG-Q-KY---KETDLLILFKDDYF 188 (193)
T ss_dssp ECTTCCEEEEEEEEESSHHHHHHHHHCTT-C-EE---TTEECEEEETTTC-
T ss_pred ECCCCCcccEEEEEECCHHHHHHHHHhCC-C-eE---CCEEEEEEEhHHHH
Confidence 99889999999999999999999998764 3 34 68999999876543
No 323
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=5.6e-12 Score=107.77 Aligned_cols=81 Identities=10% Similarity=0.008 Sum_probs=67.1
Q ss_pred ccccceec--cCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCee-eecCCCCe
Q psy93 185 PINAAIKV--KNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCF-FLTQSLRP 261 (503)
Q Consensus 185 ~~~~~L~V--~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~-~~~~~~rp 261 (503)
.++.+||| +||+..+++++|+++|++||.|..|.|+.+ ++||||+|.+.++|.+|+..||+..+ .....+++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 46788999 669999999999999999999999887643 78999999999999999999984433 12234788
Q ss_pred EEeecCCcc
Q psy93 262 VIVEPLELT 270 (503)
Q Consensus 262 l~V~~~~~~ 270 (503)
+.|.++...
T Consensus 98 l~v~~a~~~ 106 (114)
T 2cq2_A 98 LYLNFVEKV 106 (114)
T ss_dssp CEEEEESCC
T ss_pred EEEEecccC
Confidence 888887654
No 324
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.26 E-value=4.3e-12 Score=108.11 Aligned_cols=75 Identities=25% Similarity=0.311 Sum_probs=66.6
Q ss_pred ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeec
Q psy93 187 NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEP 266 (503)
Q Consensus 187 ~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~ 266 (503)
.++|||+|||..+++++|+++|++||.|..|.|+. +++||||+|.+.++|.+|+..|| +..+ .+++|.|.+
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~-g~~~---~g~~l~V~~ 80 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLA-YSKF---HHVPLYLEW 80 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHT-TCBS---SSSBCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhC-CCEE---CCeEEEEEE
Confidence 57899999999999999999999999999998875 37899999999999999999997 5555 589999998
Q ss_pred CCcc
Q psy93 267 LELT 270 (503)
Q Consensus 267 ~~~~ 270 (503)
+...
T Consensus 81 a~~~ 84 (111)
T 1whx_A 81 APIG 84 (111)
T ss_dssp EETT
T ss_pred CCCC
Confidence 7543
No 325
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.26 E-value=4e-12 Score=105.01 Aligned_cols=81 Identities=23% Similarity=0.307 Sum_probs=71.0
Q ss_pred ccccceeccCcccccCHHHHH----HHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCC
Q psy93 185 PINAAIKVKNLTSCVTNELLE----LAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLR 260 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~----~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~r 260 (503)
++.++|||+|||..+++++|+ ++|+.||.|..|.++. ++.+++||||+|.+.++|.+|+..|| +..+ .++
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~-g~~~---~g~ 79 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQ-GFPF---YDK 79 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHT-TCEE---TTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhC-CCEE---CCc
Confidence 457899999999999999999 9999999999998874 45668999999999999999999997 5555 689
Q ss_pred eEEeecCCccc
Q psy93 261 PVIVEPLELTD 271 (503)
Q Consensus 261 pl~V~~~~~~~ 271 (503)
+|.|.++....
T Consensus 80 ~l~v~~a~~~~ 90 (97)
T 1nu4_A 80 PMRIQYAKTDS 90 (97)
T ss_dssp ECEEEECSSCC
T ss_pred EEEEEEccCCC
Confidence 99999987653
No 326
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=8.8e-12 Score=103.22 Aligned_cols=77 Identities=17% Similarity=0.165 Sum_probs=67.4
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEee
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVE 265 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~ 265 (503)
..++|||.|||..+++++|+++|+.||.|. +.++.+ .+++||||+|.+.++|.+|+..|| +..+ .+++|.|.
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~-g~~~---~g~~l~V~ 89 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQ-GLRL---GTDTLRVA 89 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHT-TCCS---SSSCCEEE
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhC-CCEE---CCcEEEEE
Confidence 367999999999999999999999999997 667654 568999999999999999999997 5555 68899999
Q ss_pred cCCcc
Q psy93 266 PLELT 270 (503)
Q Consensus 266 ~~~~~ 270 (503)
++.+.
T Consensus 90 ~a~~~ 94 (97)
T 2e5j_A 90 LARQQ 94 (97)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 88664
No 327
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.25 E-value=8.7e-12 Score=102.81 Aligned_cols=78 Identities=22% Similarity=0.198 Sum_probs=68.5
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEee
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVE 265 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~ 265 (503)
+.++|||+|||..+++++|+++|+.||.|..+ ..++.+++||||+|.+.++|.+|+..|+ +..+ .+++|.|.
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~---~g~~l~v~ 86 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQ-GAEI---DGRSVSLY 86 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTT-EEEE---TTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhC-CCEE---CCeEEEEE
Confidence 46799999999999999999999999988766 4467889999999999999999999997 6666 68999999
Q ss_pred cCCccc
Q psy93 266 PLELTD 271 (503)
Q Consensus 266 ~~~~~~ 271 (503)
++.+..
T Consensus 87 ~a~~~~ 92 (96)
T 1fjc_A 87 YTGEKG 92 (96)
T ss_dssp ECSSSC
T ss_pred EcCCCC
Confidence 986653
No 328
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.25 E-value=8.3e-12 Score=126.67 Aligned_cols=75 Identities=20% Similarity=0.443 Sum_probs=66.8
Q ss_pred CCCcEEEEcC--CCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCcccc---Cc--eEEEEe
Q psy93 111 ANNCRLYLGN--IGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLK---GR--SLKIRF 183 (503)
Q Consensus 111 ~~~~~l~V~n--Lp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~---g~--~l~V~~ 183 (503)
.++.+|||+| |++.+|+++|+++|++||+|.+|.|..+|+||||+|.+.++|++||+.|||+.+. |+ +|.|.+
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~ 95 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNF 95 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEE
Confidence 3567899999 5789999999999999999999999999999999999999999999999999773 44 677777
Q ss_pred cc
Q psy93 184 AP 185 (503)
Q Consensus 184 a~ 185 (503)
+.
T Consensus 96 ~~ 97 (345)
T 3tht_A 96 VE 97 (345)
T ss_dssp CS
T ss_pred ee
Confidence 63
No 329
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=7.9e-12 Score=106.65 Aligned_cols=84 Identities=21% Similarity=0.219 Sum_probs=70.4
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEE
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVI 263 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~ 263 (503)
.+.++|||.|||..+++++|+++|+.||.|..+.+..+ .++.+++||||+|.+.++|.+|+..|| +..+ .+++|.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~-g~~~---~g~~l~ 98 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVN-GYKL---YGKILV 98 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHST-TCBC---SSCBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhC-CCEe---CCcEEE
Confidence 35689999999999999999999999999955433222 267889999999999999999999997 5555 689999
Q ss_pred eecCCcccc
Q psy93 264 VEPLELTDE 272 (503)
Q Consensus 264 V~~~~~~~~ 272 (503)
|.++.....
T Consensus 99 v~~a~~~~~ 107 (115)
T 2cpx_A 99 IEFGKNKKQ 107 (115)
T ss_dssp EEECCCCSC
T ss_pred EEEccCCCC
Confidence 999877644
No 330
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=2.4e-11 Score=101.26 Aligned_cols=81 Identities=26% Similarity=0.235 Sum_probs=70.0
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEE
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVI 263 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~ 263 (503)
.+.++|||.|||..+++++|+++|+.|+ .+.++.+ .++.+++||||+|.+.++|.+|+..|| +..+ .+++|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-g~~~---~g~~l~ 85 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAME-DGEI---DGNKVT 85 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHT-TCEE---TTEECE
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhC-CCeE---CCeEEE
Confidence 3568999999999999999999999873 5667777 578899999999999999999999997 6555 689999
Q ss_pred eecCCcccc
Q psy93 264 VEPLELTDE 272 (503)
Q Consensus 264 V~~~~~~~~ 272 (503)
|.++.+..+
T Consensus 86 V~~a~~~~~ 94 (102)
T 2fc8_A 86 LDWAKPKGE 94 (102)
T ss_dssp EEECCCCCS
T ss_pred EEEecCCCC
Confidence 999877654
No 331
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.24 E-value=2e-12 Score=107.86 Aligned_cols=81 Identities=19% Similarity=0.181 Sum_probs=69.5
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
+.++|||+|||..+++++|+++|+.||.|.. .++.+ .++.+++||||+|.+.++|.+|+. || +..+ .+++|.|
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~-g~~~---~g~~l~V 89 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LT-GLKV---FGNEIKL 89 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GG-GCCB---TTBCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cC-CcEE---CCcEEEE
Confidence 4678999999999999999999999999988 44444 567889999999999999999998 87 5555 5899999
Q ss_pred ecCCcccc
Q psy93 265 EPLELTDE 272 (503)
Q Consensus 265 ~~~~~~~~ 272 (503)
.++.+...
T Consensus 90 ~~a~~~~~ 97 (101)
T 1fj7_A 90 EKPKGRDG 97 (101)
T ss_dssp ECCSCCCC
T ss_pred EEcCCCCC
Confidence 99876543
No 332
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.24 E-value=1e-11 Score=105.26 Aligned_cols=73 Identities=18% Similarity=0.236 Sum_probs=65.7
Q ss_pred ccceeccCcccc-cCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEee
Q psy93 187 NAAIKVKNLTSC-VTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVE 265 (503)
Q Consensus 187 ~~~L~V~nLp~~-~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~ 265 (503)
.++|||.|||.. +++++|+++|+.||.|..|.+ +++||||+|.+.++|.+|+..|+ +..+ .+++|.|.
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~-g~~~---~g~~l~V~ 95 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGEN-GRVL---AGQTLDIN 95 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHT-TCEE---TTEECCEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcC-CCEE---CCeEEEEE
Confidence 479999999999 999999999999999999988 37899999999999999999997 6655 68999999
Q ss_pred cCCcc
Q psy93 266 PLELT 270 (503)
Q Consensus 266 ~~~~~ 270 (503)
++...
T Consensus 96 ~a~~~ 100 (110)
T 1wf1_A 96 MAGEP 100 (110)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 87644
No 333
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.24 E-value=2.1e-11 Score=103.27 Aligned_cols=74 Identities=26% Similarity=0.351 Sum_probs=67.3
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEee
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVE 265 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~ 265 (503)
+.++|||+|||..+++++|+++|+.||.|..|.++ ++||||+|.+.++|.+|+..|| +..+ .+++|.|.
T Consensus 30 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~-g~~~---~g~~l~V~ 98 (108)
T 2jvo_A 30 SNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVH-GKSF---ANQPLEVV 98 (108)
T ss_dssp SCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHT-TCEE---TTEECEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcC-CCEE---CCeEEEEE
Confidence 46899999999999999999999999999999987 6799999999999999999997 6655 68999999
Q ss_pred cCCcc
Q psy93 266 PLELT 270 (503)
Q Consensus 266 ~~~~~ 270 (503)
++...
T Consensus 99 ~a~~~ 103 (108)
T 2jvo_A 99 YSKLP 103 (108)
T ss_dssp SCSCC
T ss_pred EecCC
Confidence 98665
No 334
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.23 E-value=1.3e-11 Score=104.18 Aligned_cols=75 Identities=17% Similarity=0.212 Sum_probs=65.6
Q ss_pred CCcEEEEcCC--CCCCC--------HHHHHHhhccCCCeEEEEEec--------CCCceEEeeCCHHHHHHHHHHhCCcc
Q psy93 112 NNCRLYLGNI--GGDIT--------ENDIIELFKPYGETQELFINK--------EKMFGFIRMDYKHNADKAKAKLDGHV 173 (503)
Q Consensus 112 ~~~~l~V~nL--p~~~t--------e~~L~~~F~~~G~V~~v~i~~--------~kg~aFV~F~~~e~A~~Ai~~l~g~~ 173 (503)
+++.|+|.|+ |.++. +++|++.|++||+|.+|.|++ ++|||||+|.+.++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4568999998 43443 468999999999999999974 36999999999999999999999999
Q ss_pred ccCceEEEEeccc
Q psy93 174 LKGRSLKIRFAPI 186 (503)
Q Consensus 174 l~g~~l~V~~a~~ 186 (503)
+.|++|+|.+++.
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999998764
No 335
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=1.3e-11 Score=101.29 Aligned_cols=79 Identities=14% Similarity=0.095 Sum_probs=66.8
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCC-eeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEE
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGD-IERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVI 263 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~-V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~ 263 (503)
.+.++|||+|||..+++++|+++|+.||. |..+.+. +++||||+|.+.++|.+|+..||+...+ .+++|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~---~g~~l~ 76 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVEL---HGKIME 76 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEE---TTEECE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeE---CCEEEE
Confidence 35679999999999999999999999999 6666553 3789999999999999999999731555 689999
Q ss_pred eecCCcccc
Q psy93 264 VEPLELTDE 272 (503)
Q Consensus 264 V~~~~~~~~ 272 (503)
|.++.+...
T Consensus 77 v~~a~~~~~ 85 (93)
T 2cqh_A 77 VDYSVSKKL 85 (93)
T ss_dssp EEECCCCCC
T ss_pred EEEccCccc
Confidence 999876543
No 336
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.23 E-value=2.8e-11 Score=100.45 Aligned_cols=75 Identities=17% Similarity=0.204 Sum_probs=66.6
Q ss_pred ccccceeccCccc-ccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEE
Q psy93 185 PINAAIKVKNLTS-CVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVI 263 (503)
Q Consensus 185 ~~~~~L~V~nLp~-~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~ 263 (503)
++.++|||+|||. .+++++|+++|+.||.|..+.+. ++||||+|.+.++|.+|+..|| +..+ .++.|.
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~-g~~~---~g~~l~ 88 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXES-QEMN---FGKKLI 88 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHT-TSEE---TTEECE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcC-CCEE---CCEEEE
Confidence 4578999999998 99999999999999999999883 6899999999999999999997 5555 589999
Q ss_pred eecCCcc
Q psy93 264 VEPLELT 270 (503)
Q Consensus 264 V~~~~~~ 270 (503)
|.++...
T Consensus 89 V~~a~~~ 95 (97)
T 2xnq_A 89 LEVSSSN 95 (97)
T ss_dssp EEECCCC
T ss_pred EEecCCC
Confidence 9887543
No 337
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.23 E-value=1.2e-11 Score=109.95 Aligned_cols=84 Identities=25% Similarity=0.349 Sum_probs=71.3
Q ss_pred cccccceeccCcccccCHHHHHHHhccCCCeeee------EEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecC
Q psy93 184 APINAAIKVKNLTSCVTNELLELAFGVFGDIERA------IVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQ 257 (503)
Q Consensus 184 a~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~------~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~ 257 (503)
..++++|||+|||..+++++|+++|+.||.|..+ .+....++.+++||||+|.+.++|.+|+..|| +..+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~ln-g~~~--- 117 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEAN-GYVL--- 117 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHT-TBEE---
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhC-CCEe---
Confidence 3567899999999999999999999999999875 22222467889999999999999999999997 6666
Q ss_pred CCCeEEeecCCccc
Q psy93 258 SLRPVIVEPLELTD 271 (503)
Q Consensus 258 ~~rpl~V~~~~~~~ 271 (503)
.+++|.|.++....
T Consensus 118 ~g~~l~V~~a~~~~ 131 (143)
T 3egn_A 118 FGKPMVVQFARSAR 131 (143)
T ss_dssp TTEECEEEECCCSC
T ss_pred CCcEEEEEECCCCC
Confidence 68999999986543
No 338
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.22 E-value=7e-12 Score=104.68 Aligned_cols=79 Identities=16% Similarity=0.255 Sum_probs=70.1
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEee
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVE 265 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~ 265 (503)
+.++|||+|||..+++++|+++|+.||.|..|.++.+.++.+++||||+|.+.++|.+|+. + +..+ .++.+.|.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~-~~~~---~g~~l~v~ 81 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--S-QINF---HGKKLKLG 81 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--C-CCEE---TTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--C-CCeE---CCEEEEEE
Confidence 3578999999999999999999999999999999999888999999999999999999998 3 5555 67888887
Q ss_pred cCCcc
Q psy93 266 PLELT 270 (503)
Q Consensus 266 ~~~~~ 270 (503)
++...
T Consensus 82 ~a~~~ 86 (102)
T 2xs2_A 82 PAIRK 86 (102)
T ss_dssp EEEEC
T ss_pred ECCcC
Confidence 76544
No 339
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1.8e-11 Score=104.68 Aligned_cols=63 Identities=13% Similarity=0.144 Sum_probs=57.0
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCC-C---CCceeEEEEEeCCHHHHHHHHHHhh
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-R---GNSKCEGIVEFARKPAAAQALRRCA 249 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~-~---g~skg~gfV~F~s~e~A~kAl~~ln 249 (503)
..++|||+|||..+++++|+++|++||.|. +.++.+. + +.+++||||+|.+.++|.+|+..|+
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~ 73 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL 73 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh
Confidence 467899999999999999999999999999 7777663 3 6899999999999999999999983
No 340
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=4.5e-11 Score=99.21 Aligned_cols=77 Identities=23% Similarity=0.352 Sum_probs=67.9
Q ss_pred ccccceeccCcccccCHHHHHHHhccC--CCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeE
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVF--GDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPV 262 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~--G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl 262 (503)
.+.++|||+|||..+++++|+++|+.| |.|..+.+. ++||||+|.+.++|.+|+..|| +..+ .+++|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~-g~~~---~g~~l 81 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALN-GKVL---DGSPI 81 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHS-SEEE---TTEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhC-CCEe---CCcEE
Confidence 356899999999999999999999999 999988775 5699999999999999999997 6666 68999
Q ss_pred EeecCCcccc
Q psy93 263 IVEPLELTDE 272 (503)
Q Consensus 263 ~V~~~~~~~~ 272 (503)
.|.++.+...
T Consensus 82 ~v~~a~~~~~ 91 (99)
T 2cpd_A 82 EVTLAKPVDK 91 (99)
T ss_dssp EEECCCCCCC
T ss_pred EEEECCCCCC
Confidence 9999876543
No 341
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.21 E-value=4.1e-12 Score=99.73 Aligned_cols=73 Identities=16% Similarity=0.236 Sum_probs=64.2
Q ss_pred ceeccCcccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeec
Q psy93 189 AIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEP 266 (503)
Q Consensus 189 ~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~ 266 (503)
+|||+|||..+++++|+++|+.||.|..+.++.+ .++.+++||||+|.+.++|.+|+.. + +..+ .++.+.|.+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~-~~~~---~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-K-YHNV---GLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-S-SCCB---TTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-C-CCeE---CCEEEEEEE
Confidence 5899999999999999999999999999999888 5688999999999999999999985 3 4444 577777765
No 342
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.21 E-value=1.5e-11 Score=101.72 Aligned_cols=76 Identities=18% Similarity=0.205 Sum_probs=65.7
Q ss_pred cccccceeccCccc-ccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeE
Q psy93 184 APINAAIKVKNLTS-CVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPV 262 (503)
Q Consensus 184 a~~~~~L~V~nLp~-~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl 262 (503)
.++.++|||+|||. .+++++|+++|+.||.|..|.+. ++||||+|.+.++|.+|+..|| +..+ .+++|
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~-g~~~---~g~~l 75 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECES-QEMN---FGKKL 75 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHT-CSSC---BTTTB
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcC-CCee---CCcEE
Confidence 35678999999998 99999999999999999999884 6799999999999999999997 5544 48888
Q ss_pred EeecCCcc
Q psy93 263 IVEPLELT 270 (503)
Q Consensus 263 ~V~~~~~~ 270 (503)
.|.++...
T Consensus 76 ~V~~a~~~ 83 (96)
T 2kvi_A 76 ILEVSSSN 83 (96)
T ss_dssp CEEEEECC
T ss_pred EEEEcCcC
Confidence 88887554
No 343
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.21 E-value=1.1e-10 Score=114.20 Aligned_cols=104 Identities=16% Similarity=0.215 Sum_probs=86.9
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEee
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVE 265 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~ 265 (503)
+.++|||+|||.++|+++|+++|+.||.|..|.+.++ ++||||+|.+.++|.+|+..|| +..+ .+++|.|.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~-g~~i---~g~~l~v~ 91 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD-----RGFGFIRLESRTLAEIAKAELD-GTIL---KSRPLRIR 91 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHT-TCEE---TTEECEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CcEEEEEECCHHHHHHHHHHcC-CcEE---CCceeEee
Confidence 3578999999999999999999999999999999755 7899999999999999999997 6666 68999999
Q ss_pred cCCccccccCCcccccCCCCchhhhhhccCcccCCCCCcc
Q psy93 266 PLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFE 305 (503)
Q Consensus 266 ~~~~~~~~~~~~~k~i~k~~~~~~kere~~~rf~~~g~~e 305 (503)
++.+. ..+++.+++...++..+...|..+|.+.
T Consensus 92 ~a~~~-------~~l~v~nl~~~~t~~~l~~~F~~~G~i~ 124 (261)
T 3sde_A 92 FATHG-------AALTVKNLSPVVSNELLEQAFSQFGPVE 124 (261)
T ss_dssp ECCCS-------SEEEEESCCTTCCHHHHHHHHGGGSCEE
T ss_pred ecccC-------CcccccCCCCCCCHHHHHHHHHhcCCeE
Confidence 87643 3455666776667777777777777664
No 344
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.21 E-value=3.3e-11 Score=97.92 Aligned_cols=75 Identities=19% Similarity=0.145 Sum_probs=67.0
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEee
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVE 265 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~ 265 (503)
..++|||+|||..+++++|+++|++| .|..+.+. .+++||||+|.+.++|.+|+..|| +..+ .++++.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~-g~~~---~g~~l~V~ 73 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFH-QYSF---RGKDLIVQ 73 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHT-TEEE---TTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhC-CCeE---CCcEEEEE
Confidence 45789999999999999999999999 99999884 568999999999999999999997 6666 68999999
Q ss_pred cCCcc
Q psy93 266 PLELT 270 (503)
Q Consensus 266 ~~~~~ 270 (503)
++...
T Consensus 74 ~a~~~ 78 (88)
T 1wg1_A 74 LQPTD 78 (88)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 87553
No 345
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.84 E-value=1.4e-12 Score=111.80 Aligned_cols=84 Identities=30% Similarity=0.284 Sum_probs=74.1
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeee--------eEEEeC-CCCCceeEEEEEeCCHHHHHHHHHHhhCCeeee
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIER--------AIVIVD-ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFL 255 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~--------~~v~~d-~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~ 255 (503)
.+.++|||+|||..+++++|+++|+.||.|.. |.|+.+ .++.+++||||+|.+.++|.+|+..|| +..+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~-g~~~- 82 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD-GKEF- 82 (116)
Confidence 35678999999999999999999999999998 888888 578899999999999999999999997 5555
Q ss_pred cCCCCeEEeecCCcccc
Q psy93 256 TQSLRPVIVEPLELTDE 272 (503)
Q Consensus 256 ~~~~rpl~V~~~~~~~~ 272 (503)
.+++|.|.++.....
T Consensus 83 --~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 83 --SGNPIKVSFATRRAD 97 (116)
Confidence 588999999876543
No 346
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.20 E-value=7e-12 Score=109.31 Aligned_cols=78 Identities=22% Similarity=0.207 Sum_probs=67.7
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCee--eeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEE
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIE--RAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVI 263 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~--~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~ 263 (503)
..++|||+|||.++|+++|+++|+.| .|. .|.|+.|.+++++|||||+|.+.++|.+||.. + +..+ .+++|.
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~-~~~l---~gR~I~ 114 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-H-KERI---GHRYIE 114 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-T-TCCB---TTBCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-C-CCEE---CCEEEE
Confidence 46789999999999999999999999 676 89999997899999999999999999999985 4 4544 688888
Q ss_pred eecCCc
Q psy93 264 VEPLEL 269 (503)
Q Consensus 264 V~~~~~ 269 (503)
|.++..
T Consensus 115 V~~a~~ 120 (126)
T 2hgm_A 115 VFKSSQ 120 (126)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 877644
No 347
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=7.3e-11 Score=97.60 Aligned_cols=76 Identities=20% Similarity=0.148 Sum_probs=66.7
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEee
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVE 265 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~ 265 (503)
+.++|||.|| .+++++|+++|+.||.|..|.|. .+++||||+|.+.++|.+|+..|| +..+ .+++|.|.
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~-g~~~---~g~~l~v~ 82 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELN-GTQV---ESVQLKVN 82 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTT-TEEE---TTEEEEEE
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhC-CCeE---CCeEEEEE
Confidence 4678999996 89999999999999999999885 348899999999999999999997 6666 68999999
Q ss_pred cCCcccc
Q psy93 266 PLELTDE 272 (503)
Q Consensus 266 ~~~~~~~ 272 (503)
++.....
T Consensus 83 ~a~~~~~ 89 (97)
T 1x5p_A 83 IARKQPM 89 (97)
T ss_dssp CCSSCCC
T ss_pred ECCCCCC
Confidence 9876543
No 348
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.20 E-value=3.9e-11 Score=97.95 Aligned_cols=78 Identities=17% Similarity=0.114 Sum_probs=61.8
Q ss_pred cccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEE
Q psy93 184 APINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVI 263 (503)
Q Consensus 184 a~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~ 263 (503)
..+.++|||+|||.++|+++|+++|++||.|.+|.|+.+ ++|||||+|.+.++|.+ ++...+ ...++.|.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~--~~~g~~v~ 77 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDL--IIKGISVH 77 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEE--EETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCc--ccCCEEEE
Confidence 346789999999999999999999999999999999875 68999999999999983 443322 23688899
Q ss_pred eecCCccc
Q psy93 264 VEPLELTD 271 (503)
Q Consensus 264 V~~~~~~~ 271 (503)
|.++.+..
T Consensus 78 v~~a~~k~ 85 (89)
T 3d2w_A 78 ISNAEPKH 85 (89)
T ss_dssp EEECC---
T ss_pred EEEcCCCC
Confidence 98887654
No 349
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=4.8e-11 Score=98.10 Aligned_cols=77 Identities=21% Similarity=0.204 Sum_probs=64.2
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEee
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVE 265 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~ 265 (503)
...+|||+|||..+++++|+++|+.||.|..| +....++. ||||+|.+.++|.+|+. || +..+ .+++|.|.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~---~afV~f~~~~~a~~ai~-l~-g~~~---~g~~l~V~ 77 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGV---FAIVEMGDVGAREAVLS-QS-QHSL---GGHRLRVR 77 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCC---EEEEEESSHHHHHHHHT-CS-CCEE---TTEECCCB
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCc---EEEEEECCHHHHHHHHh-cC-CeEE---CCEEEEEE
Confidence 45689999999999999999999999999987 33223443 99999999999999999 86 6666 68999998
Q ss_pred cCCccc
Q psy93 266 PLELTD 271 (503)
Q Consensus 266 ~~~~~~ 271 (503)
++....
T Consensus 78 ~a~~~~ 83 (94)
T 2e5g_A 78 PREQKE 83 (94)
T ss_dssp CSCCSC
T ss_pred ECCcCC
Confidence 775543
No 350
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.19 E-value=2.9e-11 Score=104.17 Aligned_cols=75 Identities=21% Similarity=0.316 Sum_probs=65.1
Q ss_pred CCcEEEEcCCC--CCC---CHHHHHHhhccCCCeEEEEEecC----------CCceEEeeCCHHHHHHHHHHhCCccccC
Q psy93 112 NNCRLYLGNIG--GDI---TENDIIELFKPYGETQELFINKE----------KMFGFIRMDYKHNADKAKAKLDGHVLKG 176 (503)
Q Consensus 112 ~~~~l~V~nLp--~~~---te~~L~~~F~~~G~V~~v~i~~~----------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g 176 (503)
++++|+|.|+- .++ .+++|++.|++||+|.+|.|+++ +||+||+|.+.++|.+|+..|||..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 35689999993 222 37899999999999999999743 3899999999999999999999999999
Q ss_pred ceEEEEeccc
Q psy93 177 RSLKIRFAPI 186 (503)
Q Consensus 177 ~~l~V~~a~~ 186 (503)
++|.|.+++.
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998764
No 351
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.19 E-value=2.4e-11 Score=104.11 Aligned_cols=65 Identities=26% Similarity=0.262 Sum_probs=58.1
Q ss_pred ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCe
Q psy93 187 NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRP 261 (503)
Q Consensus 187 ~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rp 261 (503)
.++|||.|||..+++++|+++|++||.|..|.|+.+ +||||+|.+.++|.+||..|| +..+ .++.
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~-g~~~---~gr~ 80 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLD-NTKF---RSHE 80 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHT-TCBC---CCTT
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhC-CCEE---CCcE
Confidence 578999999999999999999999999999999765 799999999999999999997 5555 4555
No 352
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=4e-11 Score=98.78 Aligned_cols=79 Identities=19% Similarity=0.187 Sum_probs=67.9
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeee-EEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERA-IVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~-~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
..++|||+|||..+++++|+++|+.||.|..| .|+.+.. .+.|||+|.+.++|.+|+..|| +..+ .+++|.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~-g~~~---~g~~l~V 86 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLN-GFQL---ENFTLKV 86 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHT-TCBC---SSCBCEE
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhC-CCEE---CCcEEEE
Confidence 46889999999999999999999999999999 4777632 3349999999999999999997 5555 5899999
Q ss_pred ecCCccc
Q psy93 265 EPLELTD 271 (503)
Q Consensus 265 ~~~~~~~ 271 (503)
.++.+.+
T Consensus 87 ~~a~~~~ 93 (96)
T 2e44_A 87 AYIPDEM 93 (96)
T ss_dssp EECCCCC
T ss_pred EEcCccc
Confidence 9987663
No 353
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.2e-10 Score=97.39 Aligned_cols=73 Identities=22% Similarity=0.279 Sum_probs=61.6
Q ss_pred CcEEEEcCCC-------CCCCHHHHHHhhccCCCeEEEEEe-cCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEec
Q psy93 113 NCRLYLGNIG-------GDITENDIIELFKPYGETQELFIN-KEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184 (503)
Q Consensus 113 ~~~l~V~nLp-------~~~te~~L~~~F~~~G~V~~v~i~-~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a 184 (503)
..+|.|.-.+ .++++++|+++|++||.|..|.|+ +++|||||+|.+.++|.+||..+++ +.+++|+|.|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a 87 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWL 87 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECS
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEc
Confidence 3456666544 468999999999999999999997 5689999999999999999997544 67999999998
Q ss_pred ccc
Q psy93 185 PIN 187 (503)
Q Consensus 185 ~~~ 187 (503)
.+.
T Consensus 88 ~~~ 90 (100)
T 2d9o_A 88 EGQ 90 (100)
T ss_dssp SCC
T ss_pred cCC
Confidence 654
No 354
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.17 E-value=5.8e-12 Score=106.17 Aligned_cols=68 Identities=16% Similarity=0.411 Sum_probs=59.8
Q ss_pred EcCCCCCCCHHHHHHhh------------ccCCCeEEEEEecC-----CCceEEeeCCHHHHHHHHHHhCCccccCceEE
Q psy93 118 LGNIGGDITENDIIELF------------KPYGETQELFINKE-----KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLK 180 (503)
Q Consensus 118 V~nLp~~~te~~L~~~F------------~~~G~V~~v~i~~~-----kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~ 180 (503)
+.+||..+++++|.++| ++||+|.+|.|+++ +|||||+|.+.++|.+|+..|||..+.|++|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56777777887777666 99999999999754 78999999999999999999999999999999
Q ss_pred EEecc
Q psy93 181 IRFAP 185 (503)
Q Consensus 181 V~~a~ 185 (503)
|.|++
T Consensus 100 v~~sp 104 (104)
T 1jmt_A 100 AELSP 104 (104)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99874
No 355
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.16 E-value=1.1e-10 Score=98.53 Aligned_cols=82 Identities=15% Similarity=0.167 Sum_probs=69.5
Q ss_pred ccccceeccCccc-----ccCHHHHHHHhccCCCeeeeEEEeCC--CCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecC
Q psy93 185 PINAAIKVKNLTS-----CVTNELLELAFGVFGDIERAIVIVDE--RGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQ 257 (503)
Q Consensus 185 ~~~~~L~V~nLp~-----~~tee~L~~~Fs~~G~V~~~~v~~d~--~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~ 257 (503)
.++++|+|.||.. +.++++|+++|++||.|.+|.|+.++ ++.++||+||+|.+.++|.+|+..|| +..+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~ln-G~~~--- 81 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLN-GRYF--- 81 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHT-TCEE---
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHC-CCEE---
Confidence 4577899999863 23679999999999999999999874 36789999999999999999999997 6666
Q ss_pred CCCeEEeecCCcc
Q psy93 258 SLRPVIVEPLELT 270 (503)
Q Consensus 258 ~~rpl~V~~~~~~ 270 (503)
.+|+|.|.++...
T Consensus 82 ~Gr~i~v~~a~~~ 94 (105)
T 2pe8_A 82 GGRVVKACFYNLD 94 (105)
T ss_dssp TTEECEEEECCHH
T ss_pred CCcEEEEEEcCHH
Confidence 6999999998653
No 356
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.15 E-value=7.8e-11 Score=106.88 Aligned_cols=79 Identities=22% Similarity=0.280 Sum_probs=67.2
Q ss_pred cceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeecC
Q psy93 188 AAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPL 267 (503)
Q Consensus 188 ~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~~ 267 (503)
.+|||.||+..+++++|+++|++||.|.+|.|+.+. +++||||+|.+.++|.+|+..|| +..+. ...++|.|.++
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---~rgfAFVeF~d~~~A~~Ai~~Ln-G~~i~-g~g~~L~V~~A 121 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLD-GQNIY-NACCTLRIDFS 121 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---SCEEEEEEESCHHHHHHHHHHST-TBCSS-SSCSCEEEEEC
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCEEEEEECCHHHHHHHHHHhC-CCEec-CCCcEEEEEEe
Confidence 457899999999999999999999999999987652 47899999999999999999998 55542 12488999998
Q ss_pred Cccc
Q psy93 268 ELTD 271 (503)
Q Consensus 268 ~~~~ 271 (503)
....
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 7653
No 357
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.14 E-value=5.5e-11 Score=102.76 Aligned_cols=75 Identities=20% Similarity=0.220 Sum_probs=64.8
Q ss_pred cceeccCc----ccccCHHHHHHHhccCCCeeeeEEEeC-CCCCceeEEEEEeCC----HHH----HHHHHH--HhhCCe
Q psy93 188 AAIKVKNL----TSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFAR----KPA----AAQALR--RCAEGC 252 (503)
Q Consensus 188 ~~L~V~nL----p~~~tee~L~~~Fs~~G~V~~~~v~~d-~~g~skg~gfV~F~s----~e~----A~kAl~--~ln~g~ 252 (503)
+.|||.|| |+.+++.+|+++|+.||+|.+|.++.| .|+.++|||||+|.+ +.+ |.+|+. .+| ++
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~ln-g~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESS-GC 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTT-CE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhc-CC
Confidence 68999999 999999999999999999999999999 588999999999996 322 788888 454 77
Q ss_pred eeecCCCCeEEeec
Q psy93 253 FFLTQSLRPVIVEP 266 (503)
Q Consensus 253 ~~~~~~~rpl~V~~ 266 (503)
.+ .++++.|..
T Consensus 82 ~I---~Gr~irV~l 92 (136)
T 2j8a_A 82 FI---MGFKFEVIL 92 (136)
T ss_dssp EE---TTEEEEEEE
T ss_pred ee---cCcEEEEEE
Confidence 77 799999874
No 358
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.13 E-value=1.9e-10 Score=100.53 Aligned_cols=77 Identities=22% Similarity=0.246 Sum_probs=65.0
Q ss_pred cceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeE-EEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeec
Q psy93 188 AAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCE-GIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEP 266 (503)
Q Consensus 188 ~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~-gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~ 266 (503)
-.|||.||+..+|+++|+++|++||.|.+|.++.+. ++| |||+|.+.++|.+|+..|| +..+.. ..++|.|.+
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~----~gfqAFVef~~~~~A~~Ai~~Ln-G~~i~g-~~~~LrI~~ 102 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLD-GQNIYN-ACCTLRIDF 102 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET----TEEEEEEEESCHHHHHHHHHHHT-TCEEET-TEEEEEEEE
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC----CCcEEEEEECCHHHHHHHHHHcC-CCeecC-CCcEEEEEe
Confidence 356799999999999999999999999999887642 577 9999999999999999998 554422 237899998
Q ss_pred CCcc
Q psy93 267 LELT 270 (503)
Q Consensus 267 ~~~~ 270 (503)
+++.
T Consensus 103 ak~~ 106 (130)
T 3zzy_A 103 SKLT 106 (130)
T ss_dssp CSCS
T ss_pred cCCC
Confidence 8765
No 359
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.13 E-value=7.1e-11 Score=95.29 Aligned_cols=72 Identities=19% Similarity=0.209 Sum_probs=63.5
Q ss_pred ccccceeccCcccccCHHHHHHHhccC----C-------CeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCee
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVF----G-------DIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCF 253 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~----G-------~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~ 253 (503)
.+.++|||+|||..+++++|+++|+.| | .|.++.+..+ ++||||+|.+.++|.+|+ .|| +..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~-g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFD-GII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGT-TCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcC-CCE
Confidence 456899999999999999999999999 8 8999988765 889999999999999999 887 666
Q ss_pred eecCCCCeEEeec
Q psy93 254 FLTQSLRPVIVEP 266 (503)
Q Consensus 254 ~~~~~~rpl~V~~ 266 (503)
+ .++++.|+.
T Consensus 77 ~---~g~~l~V~r 86 (87)
T 2hzc_A 77 F---QGQSLKIRR 86 (87)
T ss_dssp E---TTEECEEEC
T ss_pred E---CCeEEEEeC
Confidence 5 688887763
No 360
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.12 E-value=1.9e-10 Score=99.91 Aligned_cols=75 Identities=17% Similarity=0.191 Sum_probs=63.1
Q ss_pred ceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeE-EEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeecC
Q psy93 189 AIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCE-GIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPL 267 (503)
Q Consensus 189 ~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~-gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~~ 267 (503)
.|||.||+..+++++|+++|++||.|.+|.|+.. .|| |||+|.+.++|.+|+..|| +..+.. ..++|.|.++
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~Ln-G~~i~g-~~~~l~V~~A 99 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALN-GADIYA-GCCTLKIEYA 99 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHT-TCCCBT-TBSEEEEECC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhC-CCEecC-CCeEEEEEEe
Confidence 3679999999999999999999999999998753 376 9999999999999999998 554421 2368999988
Q ss_pred Ccc
Q psy93 268 ELT 270 (503)
Q Consensus 268 ~~~ 270 (503)
.+.
T Consensus 100 k~~ 102 (124)
T 2e5i_A 100 RPT 102 (124)
T ss_dssp SCS
T ss_pred cCC
Confidence 765
No 361
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=5.7e-11 Score=96.36 Aligned_cols=78 Identities=17% Similarity=0.133 Sum_probs=64.3
Q ss_pred ccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEe
Q psy93 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIV 264 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V 264 (503)
.+.++|||+|||..+++++|+++|+.||.|..|.|+.+ +++||||+|.+.++|.+| +...+ ...+++|.|
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~----~~~~~--~~~g~~l~v 72 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSL----CGEDL--IIKGISVHI 72 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHT----TTCEE--EETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHH----hcCCc--eeCCEEEEE
Confidence 35689999999999999999999999999999998865 588999999999999754 32322 236788999
Q ss_pred ecCCcccc
Q psy93 265 EPLELTDE 272 (503)
Q Consensus 265 ~~~~~~~~ 272 (503)
.++.+...
T Consensus 73 ~~a~~~~~ 80 (88)
T 1wf0_A 73 SNAEPKHN 80 (88)
T ss_dssp ECCCCCCC
T ss_pred EecCCCCC
Confidence 98876644
No 362
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=3.3e-10 Score=97.51 Aligned_cols=78 Identities=15% Similarity=0.144 Sum_probs=70.1
Q ss_pred ccCcCCCcEEEEcCCCCC-CCHHHHHHhhccCCCeEEEEEecCCCceEEeeCC-HHHHHHHHHHhC--CccccCceEEEE
Q psy93 107 DIKFANNCRLYLGNIGGD-ITENDIIELFKPYGETQELFINKEKMFGFIRMDY-KHNADKAKAKLD--GHVLKGRSLKIR 182 (503)
Q Consensus 107 ~~~~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~-~e~A~~Ai~~l~--g~~l~g~~l~V~ 182 (503)
...+...+.|||+||+.+ ++.++|+++|+.||+|..|.+.+....|||.|.+ ..+|..|+..|| +..|.+..++++
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 345567889999999999 9999999999999999999999998899999999 899999999995 678889888887
Q ss_pred ec
Q psy93 183 FA 184 (503)
Q Consensus 183 ~a 184 (503)
..
T Consensus 92 vL 93 (121)
T 1owx_A 92 VL 93 (121)
T ss_dssp EC
T ss_pred EC
Confidence 54
No 363
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.10 E-value=2.8e-10 Score=97.43 Aligned_cols=75 Identities=17% Similarity=0.275 Sum_probs=64.6
Q ss_pred CCcEEEEcCCC--CCC--------CHHHHHHhhccCCCeEEEEEecC--CCceEEeeCCHHHHHHHHHHhCCccccCceE
Q psy93 112 NNCRLYLGNIG--GDI--------TENDIIELFKPYGETQELFINKE--KMFGFIRMDYKHNADKAKAKLDGHVLKGRSL 179 (503)
Q Consensus 112 ~~~~l~V~nLp--~~~--------te~~L~~~F~~~G~V~~v~i~~~--kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l 179 (503)
+++.|.|.|+= .+. .+++|++.|++||.|.+|.|.++ +|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 45679999983 221 24578999999999999999765 7999999999999999999999999999999
Q ss_pred EEEeccc
Q psy93 180 KIRFAPI 186 (503)
Q Consensus 180 ~V~~a~~ 186 (503)
.|.+++.
T Consensus 86 ~v~~~~~ 92 (114)
T 3s6e_A 86 TAAYVPL 92 (114)
T ss_dssp EEEEECH
T ss_pred EEEEEcH
Confidence 9999853
No 364
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.08 E-value=2.3e-10 Score=93.56 Aligned_cols=74 Identities=19% Similarity=0.141 Sum_probs=61.8
Q ss_pred cccc-eeccCcccccCHHH----HHHHhccC-CCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCC
Q psy93 186 INAA-IKVKNLTSCVTNEL----LELAFGVF-GDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSL 259 (503)
Q Consensus 186 ~~~~-L~V~nLp~~~tee~----L~~~Fs~~-G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~ 259 (503)
|..+ |||.|||.++++++ |+++|++| |+|.+| + .|+|||.|.+.++|.+|++.|+ +..+ .+
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------t---gG~AfV~F~~~esA~~A~~~l~-G~~l---~g 73 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------T---GCSAILRFINQDSAERAQKRME-NEDV---FG 73 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------C---TTCEEEEESSHHHHHHHHHHHT-TCCS---SS
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------e---cCEEEEEECCHHHHHHHHHHhc-CCcc---CC
Confidence 3444 89999999999987 55899999 599988 2 2899999999999999999998 5544 49
Q ss_pred CeEEeecCCcccc
Q psy93 260 RPVIVEPLELTDE 272 (503)
Q Consensus 260 rpl~V~~~~~~~~ 272 (503)
|++.|.++....+
T Consensus 74 r~i~v~~A~~~sd 86 (96)
T 2diu_A 74 NRIIVSFTPKNRE 86 (96)
T ss_dssp SCCEEESSCCSCC
T ss_pred ceEEEEecCCCcc
Confidence 9999999876643
No 365
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.07 E-value=2.4e-10 Score=98.90 Aligned_cols=75 Identities=20% Similarity=0.158 Sum_probs=65.8
Q ss_pred cccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEee
Q psy93 186 INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVE 265 (503)
Q Consensus 186 ~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~ 265 (503)
+.++|||+|| ++++++|+++|+.||.|..|.+. .+++||||+|.+.++|.+|+..|| +..+ .+++|.|.
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~ln-g~~~---~g~~l~V~ 106 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELN-GTQV---ESVQLKVN 106 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHT-TCBC---SSCBCEEE
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhC-CCEE---CCeEEEEE
Confidence 4678999996 69999999999999999999986 358899999999999999999997 5555 68999999
Q ss_pred cCCccc
Q psy93 266 PLELTD 271 (503)
Q Consensus 266 ~~~~~~ 271 (503)
++....
T Consensus 107 ~a~~~~ 112 (121)
T 2bz2_A 107 IARKQP 112 (121)
T ss_dssp ECCSSC
T ss_pred EeCCCC
Confidence 987654
No 366
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.05 E-value=2.3e-10 Score=110.36 Aligned_cols=81 Identities=19% Similarity=0.258 Sum_probs=68.6
Q ss_pred ccccceeccCccccc---------CHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeee
Q psy93 185 PINAAIKVKNLTSCV---------TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFL 255 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~---------tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~ 255 (503)
...++|||+||+..+ ++++|+++|++||.|.+|.|+.+ ++||||+|.+.++|..|+..|++..+++
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~-----kG~AFV~F~~~~~Ae~A~~am~g~~l~~ 206 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES-----KNCGFVKFKYQANAEFAKEAMSNQTLLL 206 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHHHTTCCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC-----CCEEEEEeCCHHHHHHHHHHhCCCEEec
Confidence 457899999999998 79999999999999999999865 8999999999999999999998555422
Q ss_pred c--------CCCCeEEeecCCcc
Q psy93 256 T--------QSLRPVIVEPLELT 270 (503)
Q Consensus 256 ~--------~~~rpl~V~~~~~~ 270 (503)
. ..+++|.|.|+...
T Consensus 207 ~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 207 PSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp TTSTTGGGGGGSCCCEEEECC--
T ss_pred cccccccccCCCCEEEEEEccCC
Confidence 1 15789999998654
No 367
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.02 E-value=4e-10 Score=95.01 Aligned_cols=82 Identities=13% Similarity=0.067 Sum_probs=67.4
Q ss_pred ccccceeccCc--ccccC--------HHHHHHHhccCCCeeeeEEEeCCC---CCceeEEEEEeCCHHHHHHHHHHhhCC
Q psy93 185 PINAAIKVKNL--TSCVT--------NELLELAFGVFGDIERAIVIVDER---GNSKCEGIVEFARKPAAAQALRRCAEG 251 (503)
Q Consensus 185 ~~~~~L~V~nL--p~~~t--------ee~L~~~Fs~~G~V~~~~v~~d~~---g~skg~gfV~F~s~e~A~kAl~~ln~g 251 (503)
.|+++|+|.|+ |..+. .++|++.|++||.|.+|.|+++.. +.++|++||+|.+.++|.+|+..|| +
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~ln-G 81 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLT-G 81 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHT-T
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhC-C
Confidence 35677888887 33333 378999999999999999988753 3678999999999999999999997 6
Q ss_pred eeeecCCCCeEEeecCCcc
Q psy93 252 CFFLTQSLRPVIVEPLELT 270 (503)
Q Consensus 252 ~~~~~~~~rpl~V~~~~~~ 270 (503)
..+ .+|+|.|.+++..
T Consensus 82 ~~f---~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 82 RKF---ANRVVVTKYCDPD 97 (105)
T ss_dssp CEE---TTEECEEEEECHH
T ss_pred CEe---CCCEEEEEEeCHH
Confidence 666 7999999887554
No 368
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.00 E-value=2.9e-10 Score=95.66 Aligned_cols=72 Identities=19% Similarity=0.260 Sum_probs=61.6
Q ss_pred ccCcccccCHHHHHHHh------------ccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCC
Q psy93 192 VKNLTSCVTNELLELAF------------GVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSL 259 (503)
Q Consensus 192 V~nLp~~~tee~L~~~F------------s~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~ 259 (503)
+.+|+..+++++|.+.| ++||.|.+|.|+.+.++.++|||||+|.+.++|.+|+..|| +..+ .+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~ln-g~~~---~G 95 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLN-NRWF---NG 95 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHT-TCEE---TT
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHC-CCEE---CC
Confidence 56777777887776666 99999999999998778899999999999999999999997 6666 68
Q ss_pred CeEEeecC
Q psy93 260 RPVIVEPL 267 (503)
Q Consensus 260 rpl~V~~~ 267 (503)
++|.|.++
T Consensus 96 r~i~v~~s 103 (104)
T 1jmt_A 96 QPIHAELS 103 (104)
T ss_dssp EECCEEEC
T ss_pred EEEEEEEc
Confidence 99888765
No 369
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=1.1e-09 Score=93.03 Aligned_cols=80 Identities=19% Similarity=0.292 Sum_probs=65.9
Q ss_pred ccccceeccCccccc-----------CHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCee
Q psy93 185 PINAAIKVKNLTSCV-----------TNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCF 253 (503)
Q Consensus 185 ~~~~~L~V~nLp~~~-----------tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~ 253 (503)
.++++|+|.||.... ++++|+++|++||.|..|.| .+. .++|||||+|.+.++|.+|+..|| +..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~ln-g~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLD-GRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHST-TCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcC-CCE
Confidence 457889999994332 25799999999999999965 543 378999999999999999999997 666
Q ss_pred eecCCCCeEEeecCCccc
Q psy93 254 FLTQSLRPVIVEPLELTD 271 (503)
Q Consensus 254 ~~~~~~rpl~V~~~~~~~ 271 (503)
+ .+++|.|.++.+..
T Consensus 89 ~---~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 89 F---GGRQITAQAWDGTT 103 (112)
T ss_dssp E---TTEECEEEECCSCC
T ss_pred E---CCcEEEEEEeCCCC
Confidence 6 69999999987653
No 370
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.94 E-value=1.8e-09 Score=92.89 Aligned_cols=82 Identities=18% Similarity=0.322 Sum_probs=67.7
Q ss_pred ccccceeccCcc--ccc---CHHHHHHHhccCCCeeeeEEEeCC-----CCCceeEEEEEeCCHHHHHHHHHHhhCCeee
Q psy93 185 PINAAIKVKNLT--SCV---TNELLELAFGVFGDIERAIVIVDE-----RGNSKCEGIVEFARKPAAAQALRRCAEGCFF 254 (503)
Q Consensus 185 ~~~~~L~V~nLp--~~~---tee~L~~~Fs~~G~V~~~~v~~d~-----~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~ 254 (503)
+++++|+|.|+- ..+ .+++|++.|++||.|.+|.|+.+. ++.++|++||+|.+.++|.+|+..|| +.++
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~Ln-Gr~f 96 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALN-GRWF 96 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHT-TCEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHC-CCEE
Confidence 367788888873 222 358899999999999999999873 34678999999999999999999997 6666
Q ss_pred ecCCCCeEEeecCCcc
Q psy93 255 LTQSLRPVIVEPLELT 270 (503)
Q Consensus 255 ~~~~~rpl~V~~~~~~ 270 (503)
.+|+|.|.+++..
T Consensus 97 ---~GR~i~v~~~~~~ 109 (118)
T 3ue2_A 97 ---AGRKVVAEVYDQE 109 (118)
T ss_dssp ---TTEECEEEEECHH
T ss_pred ---CCcEEEEEEcChH
Confidence 7999999987553
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.92 E-value=1.8e-09 Score=109.50 Aligned_cols=80 Identities=13% Similarity=0.098 Sum_probs=66.2
Q ss_pred cccccceeccC--cccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCC-
Q psy93 184 APINAAIKVKN--LTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLR- 260 (503)
Q Consensus 184 a~~~~~L~V~n--Lp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~r- 260 (503)
+.++.+|||+| |+..+|+++|+++|++||+|.+|.+.. +++||||+|.+.++|.+|++.|| +..++...++
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~ln-G~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLN-GKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTT-TCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhC-CCccccccCCc
Confidence 56788999999 678999999999999999999876653 47999999999999999999998 5555544445
Q ss_pred -eEEeecCCc
Q psy93 261 -PVIVEPLEL 269 (503)
Q Consensus 261 -pl~V~~~~~ 269 (503)
++.+.+.+.
T Consensus 89 ~~ly~~~~~~ 98 (345)
T 3tht_A 89 ITLYLNFVEK 98 (345)
T ss_dssp EECEEEECSS
T ss_pred eEEEEEEeec
Confidence 677777643
No 372
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.90 E-value=3e-09 Score=86.17 Aligned_cols=71 Identities=14% Similarity=0.272 Sum_probs=61.3
Q ss_pred cEEEEcCCCC----CCCH----HHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecc
Q psy93 114 CRLYLGNIGG----DITE----NDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185 (503)
Q Consensus 114 ~~l~V~nLp~----~~te----~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~ 185 (503)
.||+|.-+|. ++-. .+|.+.|+.||.|..++|+.++ +||+|.+.++|.+||+ |||..+.|+.|+|+++.
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt 84 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--MWVTFLEGSSALNVLS-LNGKELLNRTITIALKS 84 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--EEEEESSHHHHHHGGG-GTTCEETTEEEEEEECC
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--EEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCC
Confidence 4788888762 3333 5789999999999999998766 8999999999999998 99999999999999987
Q ss_pred cc
Q psy93 186 IN 187 (503)
Q Consensus 186 ~~ 187 (503)
+.
T Consensus 85 ~d 86 (91)
T 2dnr_A 85 PS 86 (91)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 373
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=8.4e-09 Score=86.04 Aligned_cols=82 Identities=18% Similarity=0.237 Sum_probs=64.5
Q ss_pred CceEEEEecccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeee
Q psy93 176 GRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFL 255 (503)
Q Consensus 176 g~~l~V~~a~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~ 255 (503)
...|.|.|..... ...+..+++++|+++|++||.|..|.|+ +.++|||||+|.+.++|.+|+..++ +
T Consensus 10 ~~~~~v~w~~~~~----~~~~~~~te~~L~~~F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~~~-~---- 76 (100)
T 2d9o_A 10 TPKLKLKWKCKKE----DESKGGYSKDVLLRLLQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQNEV-G---- 76 (100)
T ss_dssp SCEEEEECCCCSS----CSCCCSCCHHHHHHHHHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHTCC-B----
T ss_pred cceEEEeeeccCc----cCcCCCCCHHHHHHHHHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHhcC-C----
Confidence 4678888754221 1124679999999999999999999988 3568999999999999999999854 2
Q ss_pred cCCCCeEEeecCCccc
Q psy93 256 TQSLRPVIVEPLELTD 271 (503)
Q Consensus 256 ~~~~rpl~V~~~~~~~ 271 (503)
..+++|.|.|+....
T Consensus 77 -~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 77 -LVDNPLKISWLEGQP 91 (100)
T ss_dssp -CSSSBCEEECSSCCC
T ss_pred -CCCCeEEEEEccCCC
Confidence 258899999976653
No 374
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.69 E-value=2.8e-08 Score=84.90 Aligned_cols=79 Identities=13% Similarity=0.112 Sum_probs=63.3
Q ss_pred cccceeccCcccc----------cCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeee
Q psy93 186 INAAIKVKNLTSC----------VTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFL 255 (503)
Q Consensus 186 ~~~~L~V~nLp~~----------~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~ 255 (503)
++++|.+.|+-.. -.+++|++.|++||.|.+|.|.++. ++||+||+|.+.++|.+|+..|| +.++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~ln-G~~f- 80 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALH-GRWF- 80 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHT-TCEE-
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhC-CCEE-
Confidence 4566777776321 1236889999999999999886652 58999999999999999999997 6666
Q ss_pred cCCCCeEEeecCCccc
Q psy93 256 TQSLRPVIVEPLELTD 271 (503)
Q Consensus 256 ~~~~rpl~V~~~~~~~ 271 (503)
.+|+|.|.++...+
T Consensus 81 --~GR~i~v~~~~~~~ 94 (114)
T 3s6e_A 81 --AGKMITAAYVPLPT 94 (114)
T ss_dssp --TTEECEEEEECHHH
T ss_pred --CCEEEEEEEEcHHH
Confidence 79999999876553
No 375
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.67 E-value=2e-08 Score=81.79 Aligned_cols=69 Identities=20% Similarity=0.297 Sum_probs=59.8
Q ss_pred cEEEEcCCCCC-----C-CH---HHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEec
Q psy93 114 CRLYLGNIGGD-----I-TE---NDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184 (503)
Q Consensus 114 ~~l~V~nLp~~-----~-te---~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a 184 (503)
.||+|.-++++ + .+ .+|.+.|+.||.|..++|..++ +||+|.+.++|.+||+ |||..+.|+.|+|++.
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k 92 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD-VDGMKVKGRAVKISGP 92 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH-GGGSEETTEEEEEECC
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh-cCCeeeCCeEEEEecc
Confidence 47999988743 2 31 4688999999999999999877 9999999999999998 9999999999999865
Q ss_pred c
Q psy93 185 P 185 (503)
Q Consensus 185 ~ 185 (503)
.
T Consensus 93 ~ 93 (95)
T 1ufw_A 93 S 93 (95)
T ss_dssp C
T ss_pred C
Confidence 3
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.66 E-value=4.6e-08 Score=84.07 Aligned_cols=79 Identities=23% Similarity=0.229 Sum_probs=64.9
Q ss_pred ccccceeccCcccc-cCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCC-HHHHHHHHHHhhCCeeeecCCCCeE
Q psy93 185 PINAAIKVKNLTSC-VTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFAR-KPAAAQALRRCAEGCFFLTQSLRPV 262 (503)
Q Consensus 185 ~~~~~L~V~nLp~~-~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s-~e~A~kAl~~ln~g~~~~~~~~rpl 262 (503)
++.+.|+|.||+.. ++.++|+++|+.||+|.+|.++.+. ..|||.|.+ ..+|..|+..+|++...+ ++..+
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~-----~tgfVrf~~~~~~A~~av~~ln~~~~~i--~g~~~ 88 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA-----KEGIILFKEKAKEALGKAKDANNGNLQL--RNKEV 88 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC-----SEEEEEESSCHHHHHHHHHHTTTSCBCT--TSSSE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-----CEEEEEECCChHHHHHHHHHhhcCCcEE--eCcEE
Confidence 35678999999999 9999999999999999999998873 369999999 899999999998665443 44566
Q ss_pred EeecCCcc
Q psy93 263 IVEPLELT 270 (503)
Q Consensus 263 ~V~~~~~~ 270 (503)
.++.+.-.
T Consensus 89 ~~evL~Ge 96 (121)
T 1owx_A 89 TWEVLEGE 96 (121)
T ss_dssp EEEECCHH
T ss_pred EEEECCCH
Confidence 66655433
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.40 E-value=3.6e-07 Score=86.85 Aligned_cols=62 Identities=18% Similarity=0.247 Sum_probs=56.5
Q ss_pred CCHHHHHHhhccCCCeEEEEEe----------cCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc
Q psy93 125 ITENDIIELFKPYGETQELFIN----------KEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI 186 (503)
Q Consensus 125 ~te~~L~~~F~~~G~V~~v~i~----------~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~ 186 (503)
-.+++|.+.|++||.|.+|.|+ +.+|++||+|.+.++|.+|+..|||..+.|++|.|.+++.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 4577899999999999999996 3468999999999999999999999999999999998764
No 378
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.30 E-value=1.2e-06 Score=70.96 Aligned_cols=74 Identities=18% Similarity=0.168 Sum_probs=59.4
Q ss_pred ccccceeccCccc----ccCH----HHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeec
Q psy93 185 PINAAIKVKNLTS----CVTN----ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLT 256 (503)
Q Consensus 185 ~~~~~L~V~nLp~----~~te----e~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~ 256 (503)
+|..+|+|..++. ...+ .+|.+.|++||.|..++++.+ .+||+|.+.++|.+|+. || +..+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-------~~fVtF~d~~sAlaAi~-mn-G~~v-- 73 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-------KMWVTFLEGSSALNVLS-LN-GKEL-- 73 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-------SEEEEESSHHHHHHGGG-GT-TCEE--
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-------CEEEEECChHHHHHHHh-cC-CeEe--
Confidence 5566777776652 2333 568999999999999999987 38999999999999998 87 6666
Q ss_pred CCCCeEEeecCCcc
Q psy93 257 QSLRPVIVEPLELT 270 (503)
Q Consensus 257 ~~~rpl~V~~~~~~ 270 (503)
.+|.+.|..+.+.
T Consensus 74 -~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 74 -LNRTITIALKSPS 86 (91)
T ss_dssp -TTEEEEEEECCCS
T ss_pred -CCeEEEEEeCCCC
Confidence 7999999887654
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.28 E-value=5.3e-06 Score=78.64 Aligned_cols=107 Identities=15% Similarity=0.168 Sum_probs=73.7
Q ss_pred EeeCCHHHHHHHHHHhCCc-cccCceEEEEecccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCC-----CCCc
Q psy93 154 IRMDYKHNADKAKAKLDGH-VLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-----RGNS 227 (503)
Q Consensus 154 V~F~~~e~A~~Ai~~l~g~-~l~g~~l~V~~a~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~-----~g~s 227 (503)
+-+.+.++....|..+-.. ......+.+. .++.......-.+++|.+.|++||.|.++.|+.+. ++.+
T Consensus 101 ~G~~~~~~l~~~l~~~l~~~~~~s~v~~l~------n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~ 174 (222)
T 3dxb_A 101 VGALSKGQLKEFLDANLAGSAMESTVMVLR------NMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEI 174 (222)
T ss_dssp ESCCCHHHHHHHHHHHSCCSCCBCSEEEEE------SSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCE
T ss_pred ccccChHHHHHHHHhhccccccccccchhh------cCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCc
Confidence 3345666666666654332 2222333322 11111222334567899999999999999998652 4488
Q ss_pred eeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCeEEeecCCcc
Q psy93 228 KCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELT 270 (503)
Q Consensus 228 kg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rpl~V~~~~~~ 270 (503)
+|++||+|.+.++|.+|+..|| +.++ .+|+|.+..++..
T Consensus 175 ~G~~fv~f~~~~~a~~a~~~l~-gr~~---~gr~i~~~~~~~~ 213 (222)
T 3dxb_A 175 IVKIFVEFSIASETHKAIQALN-GRWF---AGRKVVAEVYDQE 213 (222)
T ss_dssp EEEEEEEESSHHHHHHHHHHHT-TCBS---SSSBCEEEECCHH
T ss_pred eeEEEEEECCHHHHHHHHHHhc-CceE---CCeEEEEEEcCHH
Confidence 9999999999999999999998 6666 7999999987643
No 380
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.20 E-value=4.4e-06 Score=69.38 Aligned_cols=70 Identities=11% Similarity=0.172 Sum_probs=66.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccC-----CCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEE
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPY-----GETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIR 182 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~-----G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~ 182 (503)
.++|-+-|||..++...|+.|+.+| |.|+.|.+..+-+-|+|+|.+..+|-+|.-.|+|.+|.|++|+|.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 4578899999999999999999999 999999999999999999999999999998999999999999985
No 381
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.19 E-value=1.2e-05 Score=66.12 Aligned_cols=86 Identities=16% Similarity=0.211 Sum_probs=73.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccC-----CCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPY-----GETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI 186 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~-----G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~ 186 (503)
..++|.|.|||+.++++.|.-+|+.- |+|.+|.... +-|+|+|.+...|++.++. ....|++.+|.|....+
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~~ 83 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAPP 83 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECCC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCCC
Confidence 35689999999999999999999872 5999998876 7899999999999999863 46788999999976654
Q ss_pred --ccceeccCcccccC
Q psy93 187 --NAAIKVKNLTSCVT 200 (503)
Q Consensus 187 --~~~L~V~nLp~~~t 200 (503)
..+|++.+|++.++
T Consensus 84 ~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 84 RAPARLLLQGLPPGTS 99 (104)
T ss_dssp CCCCCCCCCSCCCCCC
T ss_pred CCcceEeeecCCCCCC
Confidence 67899999998765
No 382
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.08 E-value=4.2e-06 Score=68.08 Aligned_cols=73 Identities=21% Similarity=0.230 Sum_probs=59.2
Q ss_pred cccccceeccCcccc-----cCH----HHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeee
Q psy93 184 APINAAIKVKNLTSC-----VTN----ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFF 254 (503)
Q Consensus 184 a~~~~~L~V~nLp~~-----~te----e~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~ 254 (503)
-+|..+|+|..+++. ..+ .+|.+.|+.||.|..++++.| -+||+|.+.++|.+||. || +..+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-------~~fVtF~d~~sAl~AI~-ld-G~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-------QMLVTFADSHSALSVLD-VD-GMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-------EEEEECSCSHHHHHHHH-GG-GSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-------cEEEEEcChHHHHHHHh-cC-Ceee
Confidence 367788888877632 222 568899999999999999988 39999999999999998 87 6666
Q ss_pred ecCCCCeEEeecCC
Q psy93 255 LTQSLRPVIVEPLE 268 (503)
Q Consensus 255 ~~~~~rpl~V~~~~ 268 (503)
.+|.+.|....
T Consensus 83 ---~Gr~L~V~~k~ 93 (95)
T 1ufw_A 83 ---KGRAVKISGPS 93 (95)
T ss_dssp ---TTEEEEEECCC
T ss_pred ---CCeEEEEeccC
Confidence 69999998754
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.75 E-value=3.4e-05 Score=63.82 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=65.8
Q ss_pred CcEEEEcCCCCCC-C----HHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEeccc
Q psy93 113 NCRLYLGNIGGDI-T----ENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI 186 (503)
Q Consensus 113 ~~~l~V~nLp~~~-t----e~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~ 186 (503)
.++|+|.||+.+| + .+.++++|..|+++......++=.-..|.|.++++|.+|...||+..+.|+.|+|-++.+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 3679999998765 2 257799999999999999888877789999999999999999999999999999999874
No 384
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.22 E-value=0.00081 Score=55.88 Aligned_cols=71 Identities=20% Similarity=0.170 Sum_probs=61.9
Q ss_pred ccceeccCcccccCHHHHHHHhccC-----CCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCe
Q psy93 187 NAAIKVKNLTSCVTNELLELAFGVF-----GDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRP 261 (503)
Q Consensus 187 ~~~L~V~nLp~~~tee~L~~~Fs~~-----G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rp 261 (503)
.++|-+-|||+.+++..|+.++..+ |.|..+.+..| .+=|+|+|.+...|-+|.-.|+ +..+ .++.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-----H~GAivef~d~~~AgKasLaL~-G~ef---~gr~ 91 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-----FNGAIIIFRDSKFAAKMLMILN-GSQF---QGKV 91 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-----TTEEEEECSCHHHHHHHHHHHS-SEEE---TTEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-----CCceEEEEccchhhHHHHhhcC-Ceee---cCeE
Confidence 5678888999999999999999999 99999999988 4569999999999999999997 7777 4777
Q ss_pred EEeec
Q psy93 262 VIVEP 266 (503)
Q Consensus 262 l~V~~ 266 (503)
+.|-.
T Consensus 92 Lr~gT 96 (117)
T 2l9w_A 92 IRSGT 96 (117)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 77643
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.13 E-value=0.0013 Score=53.32 Aligned_cols=63 Identities=13% Similarity=0.230 Sum_probs=53.7
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC--------CCceEEeeCCHHHHHHHHHHhCCccccC
Q psy93 114 CRLYLGNIGGDITENDIIELFKPYGETQELFINKE--------KMFGFIRMDYKHNADKAKAKLDGHVLKG 176 (503)
Q Consensus 114 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~--------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g 176 (503)
++|.|.+||+.+|++++.+.++.+..+........ -.-|||.|.+.+++....+.++|..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 57999999999999999999999988776665432 2469999999999999999999997653
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.93 E-value=0.0025 Score=51.81 Aligned_cols=54 Identities=17% Similarity=0.300 Sum_probs=44.4
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhC
Q psy93 114 CRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLD 170 (503)
Q Consensus 114 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~ 170 (503)
..++| ++|+.+...||.++|+.||.|.--.| +-..|||.|.+++.|..|+..+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wi--dDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWI--DDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEE--ETTEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEEEEEE--cCCeEEEEecCHHHHHHHHHhcc
Confidence 45666 99999999999999999996543334 35689999999999999998753
No 387
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.85 E-value=0.0032 Score=53.37 Aligned_cols=71 Identities=17% Similarity=0.215 Sum_probs=59.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccC-ceEEEEec
Q psy93 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKG-RSLKIRFA 184 (503)
Q Consensus 112 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g-~~l~V~~a 184 (503)
..+.|.|-+.|+.. ...|...|++||.|.+........+-.|.|.++.+|++|+. .||..|.+ ..|-|.+.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 35689999999774 67788899999999999886678899999999999999997 59998874 55666554
No 388
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.61 E-value=0.0084 Score=49.29 Aligned_cols=74 Identities=22% Similarity=0.319 Sum_probs=58.6
Q ss_pred ccceeccCcccccCHHHHHHHhccC-----CCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCe
Q psy93 187 NAAIKVKNLTSCVTNELLELAFGVF-----GDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRP 261 (503)
Q Consensus 187 ~~~L~V~nLp~~~tee~L~~~Fs~~-----G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rp 261 (503)
..+|.|.|||+.++++.|.-+|++- |.|..+.... .-|+|+|.+...|.+.+..- .+.+ ++.+
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~k~--~H~L---~~~~ 75 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLAQA--DHEL---HGAQ 75 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHTCS--CCBS---SSSB
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhcCC--ccee---cCeE
Confidence 5688999999999999999999872 5788776643 37899999999999998762 3333 5688
Q ss_pred EEeecCCcccc
Q psy93 262 VIVEPLELTDE 272 (503)
Q Consensus 262 l~V~~~~~~~~ 272 (503)
+.|.|+.+.+.
T Consensus 76 LsV~P~~~~~~ 86 (104)
T 2dhx_A 76 LSLRPAPPRAP 86 (104)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEcCCCCCc
Confidence 89988766654
No 389
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.24 E-value=0.0027 Score=51.81 Aligned_cols=53 Identities=17% Similarity=0.312 Sum_probs=43.6
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhC
Q psy93 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLD 170 (503)
Q Consensus 115 ~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~ 170 (503)
.++| ++|+.+...||..+|+.||.|.--.| +-..|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv~I~Wi--dDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNIQISWI--DDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEEEEEEE--ETTEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCEEEEEE--cCCeEEEEecCHHHHHHHHHhcc
Confidence 4556 99999999999999999995443333 35689999999999999998764
No 390
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.12 E-value=0.011 Score=48.27 Aligned_cols=73 Identities=12% Similarity=0.221 Sum_probs=53.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC--------CCceEEeeCCHHHHHHHHHHhCCccccCc-----eE
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKE--------KMFGFIRMDYKHNADKAKAKLDGHVLKGR-----SL 179 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~--------kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~-----~l 179 (503)
+-+|.|..||+.+|++++.+.++.+=++........ -.-|||.|.+.+++....+.++|..+.+. +-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 346999999999999999888887655433222211 24699999999999999999999976532 34
Q ss_pred EEEecc
Q psy93 180 KIRFAP 185 (503)
Q Consensus 180 ~V~~a~ 185 (503)
.|++|+
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 455554
No 391
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.99 E-value=0.035 Score=44.83 Aligned_cols=71 Identities=13% Similarity=0.179 Sum_probs=55.4
Q ss_pred cceeccCcccccCHHHHHHHhccCCCeeeeEEEeCC---CCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCC
Q psy93 188 AAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE---RGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSL 259 (503)
Q Consensus 188 ~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~---~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~ 259 (503)
++|.|.+||+.+|++++.+.++.+..+.....+... .....+-|||.|.+.+++..-...++ ++.+....+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~-g~~F~D~kg 75 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFD-GYVFLDNKG 75 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHT-TCEEECTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhC-CcEEEcCCC
Confidence 478999999999999999999999887766665542 11234579999999999999999997 555554444
No 392
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.95 E-value=0.003 Score=66.08 Aligned_cols=54 Identities=11% Similarity=0.249 Sum_probs=43.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCC-ceEEeeCCHHHHHHHHH
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-FGFIRMDYKHNADKAKA 167 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg-~aFV~F~~~e~A~~Ai~ 167 (503)
.++|||. .|..+++.+|.++|++||+|.++.+.+++| ||.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 4679997 799999999999999999999999998876 99999999999987754
No 393
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.69 E-value=0.023 Score=48.07 Aligned_cols=84 Identities=19% Similarity=0.215 Sum_probs=57.0
Q ss_pred cCceEEEEecccccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeee
Q psy93 175 KGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFF 254 (503)
Q Consensus 175 ~g~~l~V~~a~~~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~ 254 (503)
.+.+|...-....+.|.|-+.|+.. ...|...|++||.|.+..... ...+-.|.|.+..+|.+||.+ ++.++
T Consensus 12 ~~~~l~~~~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~-----~~NWihI~Y~s~~~A~rAL~k--NG~ii 83 (119)
T 1wwh_A 12 QGDSLTSEDHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN-----TGNWMHIRYQSKLQARKALSK--DGRIF 83 (119)
T ss_dssp ---------CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS-----SSSEEEEEESSHHHHHHHHTT--TTCEE
T ss_pred CCcccCCCCCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC-----CCCeEEEEeCCHHHHHHHHHh--CCeEe
Confidence 3455555544556778888888885 556778999999999876621 245899999999999999987 57776
Q ss_pred ecCCCCeEEeecCC
Q psy93 255 LTQSLRPVIVEPLE 268 (503)
Q Consensus 255 ~~~~~rpl~V~~~~ 268 (503)
. ..-.|-|.|..
T Consensus 84 ~--g~~mIGV~p~~ 95 (119)
T 1wwh_A 84 G--ESIMIGVKPCI 95 (119)
T ss_dssp T--TTEECEEEECC
T ss_pred c--CCEEEEEEECC
Confidence 1 23556777754
No 394
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.45 E-value=0.0089 Score=51.37 Aligned_cols=71 Identities=20% Similarity=0.231 Sum_probs=53.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEE-Ee-------------------cCCCceEEeeCCHHHHHHHHHHhCCc
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPYGETQELF-IN-------------------KEKMFGFIRMDYKHNADKAKAKLDGH 172 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~-i~-------------------~~kg~aFV~F~~~e~A~~Ai~~l~g~ 172 (503)
.+.|.|-+.|++. ...|...|++||.|.+-. +. ...++..|+|+++.+|.+||. .||.
T Consensus 7 e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 4568888997654 456678899999997621 11 124677999999999999997 5999
Q ss_pred cccCceEEEEecc
Q psy93 173 VLKGRSLKIRFAP 185 (503)
Q Consensus 173 ~l~g~~l~V~~a~ 185 (503)
.|.|..|-|.+.+
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999877777654
No 395
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.20 E-value=0.058 Score=44.43 Aligned_cols=75 Identities=12% Similarity=-0.005 Sum_probs=59.2
Q ss_pred ccceeccCccccc-CH----HHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCCe
Q psy93 187 NAAIKVKNLTSCV-TN----ELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRP 261 (503)
Q Consensus 187 ~~~L~V~nLp~~~-te----e~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~rp 261 (503)
.++|+|.||+..+ .. +.++++|..|+++......+. -.-..|.|.+.++|.+|...|+ +..+ .++.
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh-~~~f---~g~~ 75 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLH-KTEF---LGKE 75 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTST-TSEE---TTEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhc-ccee---cCce
Confidence 5789999998765 22 567899999999988877765 2246899999999999999997 5555 4778
Q ss_pred EEeecCCcc
Q psy93 262 VIVEPLELT 270 (503)
Q Consensus 262 l~V~~~~~~ 270 (503)
+.|.+..+.
T Consensus 76 ~r~YFgq~~ 84 (104)
T 1wey_A 76 MKLYFAQTL 84 (104)
T ss_dssp CEEECCCCS
T ss_pred eEEEecCCC
Confidence 888887744
No 396
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.16 E-value=0.047 Score=44.35 Aligned_cols=54 Identities=19% Similarity=0.236 Sum_probs=44.3
Q ss_pred cceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhh
Q psy93 188 AAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCA 249 (503)
Q Consensus 188 ~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln 249 (503)
..++| ..|+.+...||..+|+.||-| .|..+.| ..|||.|.+++.|..|+..++
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET------TEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC------CeEEEEecCHHHHHHHHHhcc
Confidence 34555 999999999999999999954 3455554 279999999999999999875
No 397
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=93.77 E-value=0.059 Score=43.92 Aligned_cols=54 Identities=19% Similarity=0.235 Sum_probs=44.0
Q ss_pred cceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhh
Q psy93 188 AAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCA 249 (503)
Q Consensus 188 ~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln 249 (503)
..++| ..|+.+...+|..+|+.||.| .|..+.| ..|||.|.+++.|..|+..++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC------CeEEEEecCHHHHHHHHHhcc
Confidence 34556 999999999999999999943 3445544 279999999999999999875
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=92.41 E-value=0.18 Score=41.01 Aligned_cols=73 Identities=14% Similarity=0.127 Sum_probs=51.5
Q ss_pred ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCC--C-CCceeEEEEEeCCHHHHHHHHHHhhCCeeeecCCCC
Q psy93 187 NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE--R-GNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLR 260 (503)
Q Consensus 187 ~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~--~-g~skg~gfV~F~s~e~A~kAl~~ln~g~~~~~~~~r 260 (503)
+-+|.|..||+.+|++++.+.++.+=.+.....+... . ...-.-|||.|.+.++...-.+.++ +..+....+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~-g~~F~D~kg~ 84 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFD-GYIFLDSKGL 84 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHST-TEEEECTTCC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcC-CcEEEeCCCC
Confidence 4578999999999999988888776554332222211 1 1123468999999999999999997 6666655443
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=91.58 E-value=0.094 Score=54.80 Aligned_cols=55 Identities=13% Similarity=0.180 Sum_probs=40.4
Q ss_pred ccceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHH
Q psy93 187 NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALR 246 (503)
Q Consensus 187 ~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~ 246 (503)
.+.|+|. .|..+++.+|.++|++||+|.++....+. .-|++|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS----SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC----CeEEEEEeCCHHHHHHHHh
Confidence 3578886 68889999999999999999998777652 3699999999998886654
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=89.61 E-value=0.23 Score=42.58 Aligned_cols=78 Identities=21% Similarity=0.204 Sum_probs=52.6
Q ss_pred ccceeccCcccccCHHHHHHHhccCCCeeeeE-EEeCC----------CC----CceeEEEEEeCCHHHHHHHHHHhhCC
Q psy93 187 NAAIKVKNLTSCVTNELLELAFGVFGDIERAI-VIVDE----------RG----NSKCEGIVEFARKPAAAQALRRCAEG 251 (503)
Q Consensus 187 ~~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~-v~~d~----------~g----~skg~gfV~F~s~e~A~kAl~~ln~g 251 (503)
...|.|-+.|+..+. .|.+.|++||.|.+-. +..+. .. ....+-.|+|++..+|.+||.. ++
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~--NG 83 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE--NG 83 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT--TT
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh--CC
Confidence 345667777776555 4667999999987721 11100 00 0245789999999999999986 68
Q ss_pred eeeecCCCCeEEeecCCcc
Q psy93 252 CFFLTQSLRPVIVEPLELT 270 (503)
Q Consensus 252 ~~~~~~~~rpl~V~~~~~~ 270 (503)
..+ .+..|-|.|+.+.
T Consensus 84 ~ii---~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 84 AVF---NGVLLGVIPYTKD 99 (132)
T ss_dssp CEE---TTEECEEEECCHH
T ss_pred eEe---CcEEEEEEECCHH
Confidence 777 4568888888643
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=85.63 E-value=1.7 Score=46.04 Aligned_cols=56 Identities=16% Similarity=0.269 Sum_probs=45.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCC
Q psy93 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDG 171 (503)
Q Consensus 113 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g 171 (503)
...++|+ +|..+...+|.++|+.||.|.-..| +...|||.|.++++|..++..+..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~wi--ddt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQISWI--DDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCEEEEC--SSSEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEE--cCCeEEEEECCHHHHHHHHHHHHh
Confidence 4467776 8999999999999999996543333 556799999999999999988753
No 402
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=68.02 E-value=47 Score=35.59 Aligned_cols=15 Identities=20% Similarity=0.330 Sum_probs=7.3
Q ss_pred EEEcCCCCCCCHHHH
Q psy93 116 LYLGNIGGDITENDI 130 (503)
Q Consensus 116 l~V~nLp~~~te~~L 130 (503)
++|-|....+++.+|
T Consensus 125 ~lv~n~~~~i~~~dl 139 (592)
T 1f5n_A 125 TFVYNSIGTINQQAM 139 (592)
T ss_dssp EEEEEEESCSSHHHH
T ss_pred eEEEECCCCccHHHH
Confidence 344444445555554
No 403
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=63.90 E-value=14 Score=38.99 Aligned_cols=54 Identities=19% Similarity=0.234 Sum_probs=42.4
Q ss_pred cceeccCcccccCHHHHHHHhccCCCeeeeEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhh
Q psy93 188 AAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCA 249 (503)
Q Consensus 188 ~~L~V~nLp~~~tee~L~~~Fs~~G~V~~~~v~~d~~g~skg~gfV~F~s~e~A~kAl~~ln 249 (503)
..++|+ +|..+...+|.++|+.||.| +|..+.+ ..|||.|.+.+.|..++..++
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS------SEEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC------CeEEEEECCHHHHHHHHHHHH
Confidence 345554 88888899999999999954 4444333 379999999999999999985
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=57.23 E-value=59 Score=25.59 Aligned_cols=70 Identities=19% Similarity=0.195 Sum_probs=53.2
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEe
Q psy93 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRF 183 (503)
Q Consensus 110 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~ 183 (503)
...+|-|-|-|||..+-..++.-.....|--..|..+ .|.|.|.|.+.++-..||..|-.. ....|.|+.
T Consensus 9 ikqnclikiinipqgtlkaevvlavrhlgyefycdyi--dgqamirfqnsdeqrlaiqkllnh--nnnklqiei 78 (129)
T 4eyt_A 9 IKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--DGQAMIRFQNSDEQRLAIQKLLNH--NNNKLQIEI 78 (129)
T ss_dssp -CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--SSCEEEEESSHHHHHHHHHHHEET--TTTEEEEEE
T ss_pred hhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--cCeeEEEecCChHHHHHHHHHHhc--CCCEEEEEE
Confidence 3467889999999999999988777777876677665 578999999999999999876322 234555554
No 405
>1cn3_F Fragment of coat protein VP2; viral coat protein VP1, viral coat protein VP2, viral entry, viral protein; 2.20A {Polyomavirus}
Probab=57.23 E-value=5.5 Score=23.59 Aligned_cols=12 Identities=58% Similarity=1.163 Sum_probs=7.1
Q ss_pred CCCCCCCCCCCC
Q psy93 487 GGSGGGGPTDYQ 498 (503)
Q Consensus 487 ~~~~~~~~~~~~ 498 (503)
|++||||...||
T Consensus 2 gggggggaashq 13 (29)
T 1cn3_F 2 GGGGGGGAASHQ 13 (29)
T ss_dssp CCCCCSTTTCCC
T ss_pred CCCCCCcccccc
Confidence 455555666666
No 406
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=46.31 E-value=91 Score=33.30 Aligned_cols=7 Identities=0% Similarity=0.140 Sum_probs=3.0
Q ss_pred ccCCCCC
Q psy93 297 RFATVNS 303 (503)
Q Consensus 297 rf~~~g~ 303 (503)
.|..|+.
T Consensus 426 ~~~~p~g 432 (592)
T 1f5n_A 426 IYSKPGG 432 (592)
T ss_dssp TTSSTTH
T ss_pred CcCCCCc
Confidence 3444443
No 407
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=41.25 E-value=37 Score=36.20 Aligned_cols=10 Identities=30% Similarity=0.305 Sum_probs=0.0
Q ss_pred HHHhHhhhhH
Q psy93 380 LRRRQNDNSM 389 (503)
Q Consensus 380 lrRrq~E~~~ 389 (503)
+++.|+|..+
T Consensus 372 ~~~~~~e~~~ 381 (575)
T 2i1j_A 372 LRQLQAAKEE 381 (575)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 408
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=40.59 E-value=18 Score=27.17 Aligned_cols=67 Identities=15% Similarity=0.210 Sum_probs=42.0
Q ss_pred EEEEcCC-CCCCCHHHHHHhhccCCC-----eEEEEEecCCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEec
Q psy93 115 RLYLGNI-GGDITENDIIELFKPYGE-----TQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184 (503)
Q Consensus 115 ~l~V~nL-p~~~te~~L~~~F~~~G~-----V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a 184 (503)
+|||..= -..++..+|..++..-+. |-.|.|. ..|.||+-... .|..++..|+...+.|+.+.|+.+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~--d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM--DNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC--SSCEEEEECTT-CHHHHHHHHTTCCC---CCCEEEC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe--CCcEEEEECHH-HHHHHHHHhccccCcCceEEEEEC
Confidence 4666422 245677778777765544 4456653 45888888774 567788889999999999998765
No 409
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=33.73 E-value=1.6e+02 Score=22.99 Aligned_cols=52 Identities=10% Similarity=0.098 Sum_probs=36.5
Q ss_pred CeEEEEEec-CCCceEEeeCCHHHHHHHHHHhCCccccCceEEEEecccccceeccCcccccCHHHHHHHhc
Q psy93 139 ETQELFINK-EKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFG 209 (503)
Q Consensus 139 ~V~~v~i~~-~kg~aFV~F~~~e~A~~Ai~~l~g~~l~g~~l~V~~a~~~~~L~V~nLp~~~tee~L~~~Fs 209 (503)
.|.++.++. -+||.||++...++...+|....+. +=||++ .++++++..++.
T Consensus 39 ~i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~gV----------------~gfvg~---pl~~~Ev~~il~ 91 (92)
T 3lpe_A 39 DVYSILASESLKGYVLVEAETKGDVEELIKGMPRV----------------RGIVPG---TIAIEEIEPLLT 91 (92)
T ss_dssp CEEEEEECTTSTTEEEEEESSHHHHHHHHTTCTTE----------------EEECSS---CCCHHHHHHHHC
T ss_pred cEEEEEEecccCCEEEEEEecchhHHHHHHCCCCc----------------eEeCCC---CCCHHHHHHHhC
Confidence 477777764 4899999999998888888765443 123333 677777777664
No 410
>1k2d_P MBP peptide, myelin basic protein peptide with 8 residue linke; MHC class II, I-AU, H-2U, autoimmune disease; HET: NDG NAG; 2.20A {Mus musculus}
Probab=29.56 E-value=26 Score=20.31 Aligned_cols=17 Identities=47% Similarity=0.943 Sum_probs=13.2
Q ss_pred CCCCccCCCCCcCCCCC
Q psy93 471 GGAGRWGPSVDHGSRRG 487 (503)
Q Consensus 471 ~~~~~~~~~~~~~~~~~ 487 (503)
+++.|.-|+|-||+..|
T Consensus 4 ggasq~rpsqrhg~gsg 20 (26)
T 1k2d_P 4 GGASQYRPSQRHGTGSG 20 (26)
T ss_pred ccccccCccccccCCCC
Confidence 57788889999987543
No 411
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=26.19 E-value=2.5e+02 Score=24.87 Aligned_cols=8 Identities=25% Similarity=-0.072 Sum_probs=3.4
Q ss_pred HHHHHhhc
Q psy93 390 FLVEQQQG 397 (503)
Q Consensus 390 ~~q~~~~~ 397 (503)
++.+.+..
T Consensus 136 ~~~em~Ke 143 (175)
T 3lay_A 136 RDVAMAQA 143 (175)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 44444433
No 412
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=23.31 E-value=1.1e+02 Score=27.22 Aligned_cols=49 Identities=18% Similarity=0.154 Sum_probs=0.0
Q ss_pred ccceeccCccc---------ccCHHHHHHHh--ccCCCeeeeEEEeCCCCCceeEEEEEeCC
Q psy93 187 NAAIKVKNLTS---------CVTNELLELAF--GVFGDIERAIVIVDERGNSKCEGIVEFAR 237 (503)
Q Consensus 187 ~~~L~V~nLp~---------~~tee~L~~~F--s~~G~V~~~~v~~d~~g~skg~gfV~F~s 237 (503)
+..+.|-|+|. -.+..+|.+.| +.|..+. ++.+.++.|. .++++|.|.+
T Consensus 12 PwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~Gh-~g~aIv~F~~ 71 (172)
T 4e8u_A 12 PWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLGH-SGTAIVEFNK 71 (172)
T ss_dssp SCEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSBE-EEEEEEECCS
T ss_pred CCEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCCC-ceeEEEEecC
No 413
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=23.24 E-value=15 Score=31.85 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=19.5
Q ss_pred HHHHHhhccCCCeEEEEEecCCCceEEeeC
Q psy93 128 NDIIELFKPYGETQELFINKEKMFGFIRMD 157 (503)
Q Consensus 128 ~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~ 157 (503)
+|+.++|...|.|+.+. ..|||+||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn--~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFN--VRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEE--TTTTEEEEEEE
T ss_pred CcccccccceeEEEEEE--CCCCeeEEeeC
Confidence 46667888888887654 47999999986
No 414
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=20.11 E-value=1.4e+02 Score=21.30 Aligned_cols=54 Identities=7% Similarity=-0.076 Sum_probs=42.1
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCceEEeeCCHHHHHHHHHH
Q psy93 114 CRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168 (503)
Q Consensus 114 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~kg~aFV~F~~~e~A~~Ai~~ 168 (503)
.++.|.++.-.-=...|...+.. -.|..+.+....+.+.|.|.+.+....+|..
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEECCHHHHHHHHHH
Confidence 46889998766667888888888 8888888876677788888866666677765
Done!