Your job contains 1 sequence.
>psy93
MLEQGFSNEQEVNQLYQARLRSYTGHFKIPEIEDMPFMSLGGRGGGRGGGVGGRGGYRGN
RPDGRGSDMNESRMGGGGGGDRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGN
IGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLK
IRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPA
AAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFAT
VNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKERQAEELKRRDEE
LMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQQGRGGSGGYGSPGQAYGNAIIDFEA
LAAAVGNAVVGNVTGVDNKGSAMDFDQGGRSGGGGGRRNDSASSGWSRREGGAGRWGPSV
DHGSRRGGSGGGGPTDYQPKRRN
The BLAST search returned 9 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy93
(503 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0015520 - symbol:nonA-l "nonA-like" species:7227 "... 754 9.3e-75 1
FB|FBgn0004227 - symbol:nonA "no on or off transient A" s... 747 5.1e-74 1
UNIPROTKB|Q9GRW7 - symbol:nonA "Protein no-on-transient A... 746 6.5e-74 1
UNIPROTKB|Q9GRX4 - symbol:nonA "Protein no-on-transient A... 744 1.1e-73 1
UNIPROTKB|Q9U1N0 - symbol:HRP65 "Hrp65 protein" species:7... 705 1.4e-69 1
UNIPROTKB|Q5ZK88 - symbol:PSPC1 "Paraspeckle component 1"... 630 1.3e-61 1
UNIPROTKB|F1P555 - symbol:SFPQ "Uncharacterized protein" ... 629 1.6e-61 1
MGI|MGI:1918764 - symbol:Sfpq "splicing factor proline/gl... 628 2.1e-61 1
RGD|727923 - symbol:Sfpq "splicing factor proline/glutami... 628 2.1e-61 1
UNIPROTKB|F1LQW3 - symbol:Sfpq "Protein Sfpq" species:101... 628 2.1e-61 1
UNIPROTKB|Q1LZD9 - symbol:PSPC1 "Paraspeckle component 1"... 627 2.7e-61 1
UNIPROTKB|F1RN28 - symbol:PSPC1 "Uncharacterized protein"... 627 2.7e-61 1
UNIPROTKB|Q8WXF1 - symbol:PSPC1 "Paraspeckle component 1"... 626 3.4e-61 1
MGI|MGI:1913895 - symbol:Pspc1 "paraspeckle protein 1" sp... 626 3.4e-61 1
RGD|1310122 - symbol:Pspc1 "paraspeckle component 1" spec... 626 3.4e-61 1
UNIPROTKB|E1BQ37 - symbol:SFPQ "Uncharacterized protein" ... 625 4.3e-61 1
UNIPROTKB|F1P7J0 - symbol:SFPQ "Uncharacterized protein" ... 625 4.3e-61 1
UNIPROTKB|P23246 - symbol:SFPQ "Splicing factor, proline-... 625 4.3e-61 1
ZFIN|ZDB-GENE-030131-713 - symbol:nono "non-POU domain co... 624 5.5e-61 1
UNIPROTKB|F1N941 - symbol:PSPC1 "Paraspeckle component 1"... 616 3.9e-60 1
ZFIN|ZDB-GENE-040426-2452 - symbol:sfpq "splicing factor ... 606 4.5e-59 1
UNIPROTKB|E1C0S2 - symbol:PSPC1 "Paraspeckle component 1"... 600 1.9e-58 1
ZFIN|ZDB-GENE-030131-9530 - symbol:pspc1 "paraspeckle com... 599 2.5e-58 1
UNIPROTKB|Q5ZIZ5 - symbol:NONO "Uncharacterized protein" ... 592 1.4e-57 1
UNIPROTKB|E2RIS4 - symbol:E2RIS4 "Uncharacterized protein... 592 1.4e-57 1
UNIPROTKB|G3N361 - symbol:NONO "Uncharacterized protein" ... 591 1.7e-57 1
UNIPROTKB|Q2KJ42 - symbol:NONO "Uncharacterized protein" ... 591 1.7e-57 1
UNIPROTKB|F1PTP3 - symbol:NONO "Uncharacterized protein" ... 591 1.7e-57 1
UNIPROTKB|Q15233 - symbol:NONO "Non-POU domain-containing... 591 1.7e-57 1
UNIPROTKB|I3LSU1 - symbol:NONO "Uncharacterized protein" ... 591 1.7e-57 1
MGI|MGI:1855692 - symbol:Nono "non-POU-domain-containing,... 591 1.7e-57 1
RGD|1549738 - symbol:Nono "non-POU domain containing, oct... 591 1.7e-57 1
UNIPROTKB|F1Q0F6 - symbol:F1Q0F6 "Uncharacterized protein... 579 3.3e-56 1
UNIPROTKB|E2QXH2 - symbol:PSPC1 "Uncharacterized protein"... 560 3.4e-54 1
UNIPROTKB|F1Q1U4 - symbol:F1Q1U4 "Uncharacterized protein... 560 3.4e-54 1
WB|WBGene00017778 - symbol:psf-1 species:6239 "Caenorhabd... 534 1.9e-51 1
UNIPROTKB|Q91017 - symbol:SFPQ "Uncharacterized protein" ... 496 2.0e-47 1
UNIPROTKB|F1PM01 - symbol:F1PM01 "Uncharacterized protein... 397 7.5e-42 2
UNIPROTKB|J9P3Z0 - symbol:J9P3Z0 "Uncharacterized protein... 439 2.2e-41 1
UNIPROTKB|F1M3I1 - symbol:F1M3I1 "Uncharacterized protein... 436 4.6e-41 1
UNIPROTKB|F1M8Q6 - symbol:F1M8Q6 "Uncharacterized protein... 400 3.0e-37 1
UNIPROTKB|F1LVR9 - symbol:F1LVR9 "Uncharacterized protein... 387 7.2e-36 1
UNIPROTKB|C9IZL7 - symbol:NONO "Non-POU domain-containing... 357 1.1e-32 1
UNIPROTKB|H7C367 - symbol:NONO "Non-POU domain-containing... 342 4.2e-31 1
UNIPROTKB|C9JYS8 - symbol:NONO "Non-POU domain-containing... 205 4.4e-27 2
UNIPROTKB|I3L566 - symbol:RAVER1 "Uncharacterized protein... 173 8.3e-10 1
UNIPROTKB|E2RM84 - symbol:RAVER1 "Uncharacterized protein... 173 8.7e-10 1
UNIPROTKB|F1S3K5 - symbol:RAVER1 "Uncharacterized protein... 173 8.9e-10 1
UNIPROTKB|A4FUZ2 - symbol:RAVER1 "RAVER1 protein" species... 172 1.1e-09 1
UNIPROTKB|Q8IY67 - symbol:RAVER1 "Ribonucleoprotein PTB-b... 171 1.1e-09 1
UNIPROTKB|E9PAU2 - symbol:RAVER1 "Ribonucleoprotein PTB-b... 171 1.5e-09 1
MGI|MGI:1919016 - symbol:Raver1 "ribonucleoprotein, PTB-b... 168 3.2e-09 1
RGD|1359190 - symbol:Raver1 "ribonucleoprotein, PTB-bindi... 167 4.1e-09 1
UNIPROTKB|Q5XI28 - symbol:Raver1 "Ribonucleoprotein PTB-b... 167 4.1e-09 1
CGD|CAL0001392 - symbol:orf19.3037 species:5476 "Candida ... 154 8.7e-08 1
UNIPROTKB|A4QUF0 - symbol:PAB1 "Polyadenylate-binding pro... 159 1.5e-07 2
ZFIN|ZDB-GENE-090713-1 - symbol:raver2 "ribonucleoprotein... 152 2.2e-07 1
ZFIN|ZDB-GENE-050522-99 - symbol:raver1 "ribonucleoprotei... 151 2.3e-07 1
UNIPROTKB|Q5JQF3 - symbol:PABPC5 "Polyadenylate-binding p... 98 2.9e-07 2
UNIPROTKB|G3MZ94 - symbol:PABPC1L2A "Uncharacterized prot... 135 4.1e-07 1
UNIPROTKB|Q5JQF8 - symbol:PABPC1L2A "Polyadenylate-bindin... 135 4.1e-07 1
UNIPROTKB|F1RPL9 - symbol:LOC100623240 "Uncharacterized p... 135 4.1e-07 1
UNIPROTKB|G3MYW4 - symbol:PABPC1L2A "Uncharacterized prot... 133 7.6e-07 1
UNIPROTKB|F1NMK1 - symbol:RAVER2 "Uncharacterized protein... 145 8.2e-07 1
MGI|MGI:2443623 - symbol:Raver2 "ribonucleoprotein, PTB-b... 144 1.2e-06 1
RGD|1307610 - symbol:Raver2 "ribonucleoprotein, PTB-bindi... 144 1.2e-06 1
UNIPROTKB|F2Z2W2 - symbol:RBM14-RBM4 "Protein RBM14-RBM4"... 119 1.3e-06 1
UNIPROTKB|Q6GR16 - symbol:epabp-b "Embryonic polyadenylat... 143 1.4e-06 1
GENEDB_PFALCIPARUM|PFD0700c - symbol:PFD0700c "RNA bindin... 139 1.5e-06 1
UNIPROTKB|Q8I1U3 - symbol:PFD0700c "RNA binding protein, ... 139 1.5e-06 1
ZFIN|ZDB-GENE-030131-3238 - symbol:pabpc1a "poly A bindin... 142 1.7e-06 2
ZFIN|ZDB-GENE-050308-1 - symbol:pabpc1b "poly A binding p... 141 1.7e-06 2
ZFIN|ZDB-GENE-050522-496 - symbol:rbm14a "RNA binding mot... 140 1.9e-06 1
UNIPROTKB|P20965 - symbol:pabpc1-a "Polyadenylate-binding... 139 2.3e-06 2
UNIPROTKB|Q96DU9 - symbol:PABPC5 "Polyadenylate-binding p... 98 2.3e-06 2
RGD|2322083 - symbol:LOC100360473 "poly A binding protein... 94 2.5e-06 2
ZFIN|ZDB-GENE-030131-3902 - symbol:rbm4.1 "RNA binding mo... 138 2.6e-06 1
RGD|1566367 - symbol:Pabpc1l2a "poly(A) binding protein, ... 129 2.7e-06 1
UNIPROTKB|E1BWJ7 - symbol:PABPC1L "Uncharacterized protei... 140 3.1e-06 1
RGD|1559517 - symbol:Pabpc4l "poly(A) binding protein, cy... 124 3.1e-06 2
UNIPROTKB|E2RQC8 - symbol:PABPC1 "Uncharacterized protein... 138 3.1e-06 2
UNIPROTKB|P61286 - symbol:PABPC1 "Polyadenylate-binding p... 138 3.7e-06 2
UNIPROTKB|J9P326 - symbol:PABPC1 "Uncharacterized protein... 138 3.7e-06 2
UNIPROTKB|P11940 - symbol:PABPC1 "Polyadenylate-binding p... 138 3.7e-06 2
UNIPROTKB|F2Z557 - symbol:PABPC1 "Uncharacterized protein... 138 3.7e-06 2
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 138 3.7e-06 2
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto... 138 3.7e-06 2
UNIPROTKB|Q6IP09 - symbol:pabpc1-b "Polyadenylate-binding... 136 3.8e-06 2
ZFIN|ZDB-GENE-030131-5836 - symbol:pabpc1l "poly(A) bindi... 139 3.8e-06 1
UNIPROTKB|I3LS00 - symbol:PABPC1 "Uncharacterized protein... 138 3.9e-06 2
UNIPROTKB|H3BPI5 - symbol:PABPC3 "Polyadenylate-binding p... 132 3.9e-06 1
UNIPROTKB|Q6DEY7 - symbol:epabp "Embryonic polyadenylate-... 139 3.9e-06 1
UNIPROTKB|F1N4Q4 - symbol:PABPC5 "Uncharacterized protein... 95 4.0e-06 2
UNIPROTKB|I3L873 - symbol:RAVER2 "Uncharacterized protein... 138 4.2e-06 1
SGD|S000000967 - symbol:PAB1 "Poly(A) binding protein" sp... 138 4.4e-06 1
UNIPROTKB|F8WDX3 - symbol:RBM14 "RNA-binding protein 14" ... 114 4.6e-06 1
UNIPROTKB|Q2PYN1 - symbol:RBM14 "RNA-binding protein 14" ... 114 4.6e-06 1
UNIPROTKB|F1PQV8 - symbol:PABPC5 "Uncharacterized protein... 93 6.5e-06 2
UNIPROTKB|H7BY49 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 112 7.5e-06 1
UNIPROTKB|P0CB38 - symbol:PABPC4L "Polyadenylate-binding ... 124 8.5e-06 2
WARNING: Descriptions of 109 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0015520 [details] [associations]
symbol:nonA-l "nonA-like" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008187 "poly-pyrimidine
tract binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0005681 EMBL:U31961 GO:GO:0000398
GO:GO:0008187 InterPro:IPR012975 Pfam:PF08075 FlyBase:FBgn0015520
ProteinModelPortal:Q7JPC7 STRING:Q7JPC7 PRIDE:Q7JPC7
InParanoid:Q7JPC7 ArrayExpress:Q7JPC7 Bgee:Q7JPC7 Uniprot:Q7JPC7
Length = 642
Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
Identities = 158/334 (47%), Positives = 222/334 (66%)
Query: 81 DRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGET 140
D + ++++ I GPT +LPP E D KF RLY+GN+ D T++D+ E+FKPYGE
Sbjct: 245 DFFIAQRLLDISGPTHELPPIELPT-DNKFVGRNRLYVGNLTSDTTDDDLREMFKPYGEI 303
Query: 141 QELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVT 200
++F N EK F F+R+DY NA+KAK LDG + KGR L++RFAP NA ++V NL V+
Sbjct: 304 GDIFSNPEKNFTFLRLDYYQNAEKAKRALDGSLRKGRVLRVRFAP-NAIVRVTNLNQFVS 362
Query: 201 NELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLR 260
NELL +F +FG IERA++ VD+RG EGIVEFA+K +A+ LR C E CFFLT SLR
Sbjct: 363 NELLHQSFEIFGPIERAVICVDDRGKHTGEGIVEFAKKSSASACLRLCNEKCFFLTASLR 422
Query: 261 PVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYE 320
P +VEP+E+ ++ DGL ++T+NKK+ EF +R VGPRFA +NSFE EYGSRWKQLH+L++
Sbjct: 423 PCLVEPMEVNNDNDGLPDKTLNKKSLEFRHERSVGPRFACLNSFEHEYGSRWKQLHDLFK 482
Query: 321 HETEMLRKELAQRE--IDRERQKAEWEMK-ERQAEELKRR--DEELMK-------KHAEE 368
+ + L++EL E ++ + + A +E + E +ELK+R D E MK K AEE
Sbjct: 483 SKQDSLKRELKMEEDKLEAQMEYARYEQETELLRQELKKRELDNERMKLEWEMREKQAEE 542
Query: 369 MQLR-----------LAQQEEDLRRRQNDNSMFL 391
++ R L + EED+R RQ +N + +
Sbjct: 543 IRKREEEYMHRYQNQLLRHEEDMRARQQENDLLM 576
>FB|FBgn0004227 [details] [associations]
symbol:nonA "no on or off transient A" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA]
[GO:0045433 "male courtship behavior, veined wing generated song
production" evidence=NAS;IMP;TAS] [GO:0007601 "visual perception"
evidence=NAS;IMP;TAS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0008187 "poly-pyrimidine tract binding"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS;TAS]
[GO:0007632 "visual behavior" evidence=NAS] [GO:0042331
"phototaxis" evidence=NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE014298 GO:GO:0007601
GO:GO:0042331 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GO:GO:0045433 GO:GO:0007632
InterPro:IPR012975 Pfam:PF08075 EMBL:M33496 EMBL:X55902
EMBL:AY119651 PIR:JH0162 PIR:JH0163 RefSeq:NP_001014747.1
RefSeq:NP_523367.2 UniGene:Dm.179 ProteinModelPortal:Q04047
SMR:Q04047 MINT:MINT-810524 STRING:Q04047 PaxDb:Q04047
EnsemblMetazoa:FBtr0074232 GeneID:32603 KEGG:dme:Dmel_CG4211
CTD:32603 FlyBase:FBgn0004227 eggNOG:NOG298586
GeneTree:ENSGT00390000005004 InParanoid:Q04047 KO:K13219
OrthoDB:EOG4GTHVF GenomeRNAi:32603 NextBio:779385 Bgee:Q04047
GermOnline:CG4211 Uniprot:Q04047
Length = 700
Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
Identities = 151/318 (47%), Positives = 215/318 (67%)
Query: 81 DRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGET 140
D + T+++ +I GPT +L P E + KF+ RLY+GN+ DIT++++ E+FKPYGE
Sbjct: 270 DFFITQRLRSISGPTFELEPVEVPT-ETKFSGRNRLYVGNLTNDITDDELREMFKPYGEI 328
Query: 141 QELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVT 200
E+F N +K F F+++DY NA+KAK LDG + KGR L++RFAP ++V NLT V+
Sbjct: 329 SEIFSNLDKNFTFLKVDYHPNAEKAKRALDGSMRKGRQLRVRFAPNATILRVSNLTPFVS 388
Query: 201 NELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLR 260
NELL +F +FG IERA + VD+RG EGIVEFA+K +A+ LR C E CFFLT SLR
Sbjct: 389 NELLYKSFEIFGPIERASITVDDRGKHMGEGIVEFAKKSSASACLRMCNEKCFFLTASLR 448
Query: 261 PVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYE 320
P +V+P+E+ D+ DGL E+ NKK P+F ++R +GPRFA NSFE EYGSRWKQLH L++
Sbjct: 449 PCLVDPMEVNDDTDGLPEKAFNKKMPDFNQERSIGPRFADPNSFEHEYGSRWKQLHNLFK 508
Query: 321 HETEMLRKEL--------AQREIDRERQKAEW---EMKERQAE-ELKRRDEELMKKHAEE 368
+ + L++EL AQ E R Q+ E E+++R+ + E K+ + E+ +K AEE
Sbjct: 509 TKQDALKRELKMEEDKLEAQMEYARYEQETELLRQELRKREVDNERKKLEWEMREKQAEE 568
Query: 369 MQLRLAQQEEDLRRRQND 386
M+ R +EE +RR Q +
Sbjct: 569 MRKR---EEETMRRHQTE 583
Score = 227 (85.0 bits), Expect = 7.3e-16, P = 7.3e-16
Identities = 40/73 (54%), Positives = 60/73 (82%)
Query: 319 YEHETEMLRKELAQREIDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEE 378
YE ETE+LR+EL +RE+D ER+K EWEM+E+QAEE+++R+EE M++H EMQ + +QEE
Sbjct: 534 YEQETELLRQELRKREVDNERKKLEWEMREKQAEEMRKREEETMRRHQTEMQSHMNRQEE 593
Query: 379 DLRRRQNDNSMFL 391
D+ RRQ + ++F+
Sbjct: 594 DMLRRQQE-TLFM 605
>UNIPROTKB|Q9GRW7 [details] [associations]
symbol:nonA "Protein no-on-transient A" species:7244
"Drosophila virilis" [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0007601 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0050896 InterPro:IPR012975 Pfam:PF08075
eggNOG:NOG298586 OrthoDB:EOG4GTHVF EMBL:AJ298998
ProteinModelPortal:Q9GRW7 FlyBase:FBgn0042729 InParanoid:Q9GRW7
Uniprot:Q9GRW7
Length = 697
Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
Identities = 152/318 (47%), Positives = 219/318 (68%)
Query: 81 DRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGET 140
D ++++++ +I GPT +LPP E ++ KF+ RLY+GN+ DIT+ ++ E+FKPYGE
Sbjct: 253 DFFYSQRLRSISGPTHELPPIEVA-QETKFSGRNRLYVGNLTNDITDEELREMFKPYGEI 311
Query: 141 QELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVT 200
E+F N EK F F+++DY NA+KAK LDG + KGR +++RFAP ++V NLT V+
Sbjct: 312 GEIFSNLEKNFTFLKVDYHINAEKAKRPLDGSMRKGRHVRVRFAPNATILRVSNLTPFVS 371
Query: 201 NELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLR 260
NELL +F +FG IERA + VD+RG EG VEFA+K +A+ LR C E CFFLT SLR
Sbjct: 372 NELLYKSFEIFGPIERASITVDDRGKHLGEGTVEFAKKSSASACLRLCNEKCFFLTASLR 431
Query: 261 PVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYE 320
P +VEP+E+ D+ DGL E+ +NKK EF ++R VGPRFA +NSFE EYGSRWKQLH+L++
Sbjct: 432 PCLVEPMEVNDDNDGLPEKALNKKLQEFNQERSVGPRFADLNSFEHEYGSRWKQLHDLFK 491
Query: 321 HETEMLRKEL--------AQREIDRERQKAEW---EMKERQAE-ELKRRDEELMKKHAEE 368
+ + L++EL AQ E R Q+ E E+++R+++ E K+ + E+ +K AEE
Sbjct: 492 SKQDALKRELKMEEEKLDAQMEYARYEQETELLRQELRKRESDNERKKLEWEMREKQAEE 551
Query: 369 MQLRLAQQEEDLRRRQND 386
M+ R +EE +RR Q +
Sbjct: 552 MRKR---EEETMRRHQTE 566
Score = 251 (93.4 bits), Expect = 1.3e-18, P = 1.3e-18
Identities = 43/73 (58%), Positives = 62/73 (84%)
Query: 319 YEHETEMLRKELAQREIDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEE 378
YE ETE+LR+EL +RE D ER+K EWEM+E+QAEE+++R+EE M++H EMQ R+ +QEE
Sbjct: 517 YEQETELLRQELRKRESDNERKKLEWEMREKQAEEMRKREEETMRRHQTEMQSRMVRQEE 576
Query: 379 DLRRRQNDNSMFL 391
D+RRRQ +N++F+
Sbjct: 577 DMRRRQQENTLFM 589
>UNIPROTKB|Q9GRX4 [details] [associations]
symbol:nonA "Protein no-on-transient A" species:47316
"Drosophila littoralis" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0007601
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0050896 InterPro:IPR012975
Pfam:PF08075 EMBL:AJ296178 ProteinModelPortal:Q9GRX4 PRIDE:Q9GRX4
FlyBase:FBgn0043410 Uniprot:Q9GRX4
Length = 698
Score = 744 (267.0 bits), Expect = 1.1e-73, P = 1.1e-73
Identities = 153/318 (48%), Positives = 217/318 (68%)
Query: 81 DRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGET 140
D + +++ +I GPT +LPP E ++ KF+ RLY+GN+ DIT+ ++ E+FKPYGE
Sbjct: 249 DFFIAQRLRSISGPTHELPPIEVA-QETKFSGRNRLYVGNLTNDITDEELREMFKPYGEI 307
Query: 141 QELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVT 200
E+F N EK F F+++DY NA+KAK LDG + KGR L++RFAP ++V NLT V+
Sbjct: 308 GEIFSNLEKNFTFLKVDYHINAEKAKRALDGSMRKGRQLRVRFAPNATILRVSNLTPFVS 367
Query: 201 NELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLR 260
NELL +F +FG IERA + VD+RG EG VEFA+K +A+ LR C E CFFLT SLR
Sbjct: 368 NELLYKSFEIFGPIERASITVDDRGKHLGEGTVEFAKKSSASACLRLCNEKCFFLTASLR 427
Query: 261 PVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYE 320
P +VEP+E+ D+ DGL E+ +NKK EF ++R VGPRFA +NSFE EYGSRWKQLH+L++
Sbjct: 428 PCLVEPMEVNDDNDGLPEKALNKKLQEFNQERSVGPRFADLNSFEHEYGSRWKQLHDLFK 487
Query: 321 HETEMLRKEL--------AQREIDRERQKAEW---EMKERQAE-ELKRRDEELMKKHAEE 368
+ + L++EL AQ E R Q+ E E+++R+++ E K+ + E+ +K AEE
Sbjct: 488 SKQDALKRELKMEEEKLDAQMEYARYGQETELSRQELRKRESDNERKKLEWEMREKQAEE 547
Query: 369 MQLRLAQQEEDLRRRQND 386
M+ R +EE +RR Q +
Sbjct: 548 MRKR---EEETMRRHQTE 562
Score = 238 (88.8 bits), Expect = 4.0e-17, P = 4.0e-17
Identities = 41/73 (56%), Positives = 60/73 (82%)
Query: 319 YEHETEMLRKELAQREIDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEE 378
Y ETE+ R+EL +RE D ER+K EWEM+E+QAEE+++R+EE M++H EMQ R+ +QEE
Sbjct: 513 YGQETELSRQELRKRESDNERKKLEWEMREKQAEEMRKREEETMRRHQTEMQSRMVRQEE 572
Query: 379 DLRRRQNDNSMFL 391
D+RRRQ +N++F+
Sbjct: 573 DMRRRQQENTLFM 585
>UNIPROTKB|Q9U1N0 [details] [associations]
symbol:HRP65 "Hrp65 protein" species:7153 "Chironomus
tentans" [GO:0003723 "RNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006406 "mRNA export from nucleus" evidence=NAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005856
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406
EMBL:AJ243013 EMBL:AJ404654 ProteinModelPortal:Q9U1N0
InterPro:IPR012975 Pfam:PF08075 Uniprot:Q9U1N0
Length = 535
Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
Identities = 140/318 (44%), Positives = 214/318 (67%)
Query: 81 DRYFTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGET 140
D K+ + GPT DLP E ++IKF+ RLY+GN+ D+TE ++ ELF PYGE
Sbjct: 82 DFIVNSKLKNLAGPTHDLP--ELVCEEIKFSGRNRLYIGNLTSDVTEEELKELFSPYGEI 139
Query: 141 QELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVT 200
E FIN EK F F+++DY+ NA++AK LDG + K + ++IRFAP I+VKNLT V+
Sbjct: 140 SEAFINAEKNFAFLKIDYRANAERAKKDLDGRMRKNKPIRIRFAPNATTIRVKNLTPFVS 199
Query: 201 NELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLR 260
NELL +F VFG +ERA++IVD+RG + EGIVEFARK A AL+ C+E C+FLT SLR
Sbjct: 200 NELLFKSFEVFGQVERAVIIVDDRGKTTGEGIVEFARKSGAMSALKYCSEKCYFLTSSLR 259
Query: 261 PVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYE 320
P +VE + DE DG E+++ +K+ ++YK RQ GPRFA + SFE E+G++WKQ++++Y+
Sbjct: 260 PCVVETFDHIDETDGFPEKSLMRKSNDYYKARQNGPRFAEMGSFEHEFGTKWKQMYDMYK 319
Query: 321 HETEMLRKE--LAQREIDRERQKAEWEMK-ERQAEELKRR--DEELMKKHAEEMQLRLAQ 375
+ + L++E L + +++ + + A++E + E E+L++R D + KK E+ + + +
Sbjct: 320 QKHDALKREMQLEEEKLEAQMEYAKFEHETESLREQLRKREQDRDRQKKEWEDRERQADE 379
Query: 376 Q----EEDLRRRQNDNSM 389
E+ +RR+Q+D M
Sbjct: 380 SRIRDEQQMRRQQDDMQM 397
Score = 228 (85.3 bits), Expect = 3.2e-16, P = 3.2e-16
Identities = 39/73 (53%), Positives = 61/73 (83%)
Query: 319 YEHETEMLRKELAQREIDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEE 378
+EHETE LR++L +RE DR+RQK EWE +ERQA+E + RDE+ M++ ++MQ+R+ +Q+E
Sbjct: 345 FEHETESLREQLRKREQDRDRQKKEWEDRERQADESRIRDEQQMRRQQDDMQMRMQRQDE 404
Query: 379 DLRRRQNDNSMFL 391
++RRRQ +NS+F+
Sbjct: 405 EMRRRQQENSLFM 417
>UNIPROTKB|Q5ZK88 [details] [associations]
symbol:PSPC1 "Paraspeckle component 1" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016363
"nuclear matrix" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005730
GO:GO:0006355 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0016363 InterPro:IPR012975
Pfam:PF08075 eggNOG:NOG298586 HOGENOM:HOG000231095
HOVERGEN:HBG009801 CTD:55269 OrthoDB:EOG444KKN EMBL:AJ720196
IPI:IPI00584056 RefSeq:NP_001026002.1 UniGene:Gga.4178 HSSP:Q99K48
ProteinModelPortal:Q5ZK88 SMR:Q5ZK88 PRIDE:Q5ZK88 GeneID:418955
KEGG:gga:418955 InParanoid:Q5ZK88 NextBio:20822076 Uniprot:Q5ZK88
Length = 523
Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
Identities = 138/309 (44%), Positives = 206/309 (66%)
Query: 93 GPTLDLPPS-EPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMF 151
G T+D+ +P K + CRL++GN+ DITE D LF+ YGE E+FIN+++ F
Sbjct: 61 GFTIDIKSFLKPGEKS--YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGF 118
Query: 152 GFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVF 211
GFIR++ + A+ AKA+LDG +LK R L+IRFA AA+ VKNL+ V+NELLE AF F
Sbjct: 119 GFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQF 178
Query: 212 GDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTD 271
G +ERA+V+VD+RG + +G VEFA KP A +AL RC++G F LT + RPV+VEP+E D
Sbjct: 179 GPVERAVVVVDDRGRATGKGFVEFAAKPPARKALERCSDGAFLLTTTPRPVVVEPMEQFD 238
Query: 272 EIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL- 330
+ DGL E+ + +KT +++K+R+ PRFA +FEFEY SRWK L E+ + + E + + +
Sbjct: 239 DEDGLPEKLM-QKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIR 297
Query: 331 -AQREIDRERQKAEWE-----MKE---RQAEELKR----RDEELMKKHAEEMQLRLAQQE 377
A+ +++ E + A E M++ R+ EEL+R R++EL K+ +++QLR E
Sbjct: 298 EAKEKLEAEMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKR--KQIQLR---HE 352
Query: 378 EDLRRRQND 386
E+ RRR+ +
Sbjct: 353 EEHRRREEE 361
>UNIPROTKB|F1P555 [details] [associations]
symbol:SFPQ "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000380 "alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=IEA] [GO:0042382 "paraspeckles" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016363 GO:GO:0000380 GO:GO:0042382 InterPro:IPR012975
Pfam:PF08075 GeneTree:ENSGT00390000005004 OMA:APGGHPK
EMBL:AADN02043825 EMBL:AADN02043826 IPI:IPI00574618
Ensembl:ENSGALT00000003963 ArrayExpress:F1P555 Uniprot:F1P555
Length = 647
Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
Identities = 136/287 (47%), Positives = 185/287 (64%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DIT+ D LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 233 YTQRCRLFVGNLPADITDEDFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 292
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG +ERA+VIVD+RG S
Sbjct: 293 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPVERAVVIVDDRGRSTG 352
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 353 KGIVEFASKPAARKAFERCTEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 411
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA SFEFEY RWK L E+ + + E + K + + D+ + E E
Sbjct: 412 KERETPPRFAQPGSFEFEYSQRWKSLDEMEKQQREQVAKNMKDAK-DKLESEMEDAYHEH 470
Query: 350 QA----EELKRRDEELMKK---HAEEMQLRLA---QQEEDLRRRQND 386
QA ++L RR EEL + H +EMQ R +QEE+ RRR+ +
Sbjct: 471 QANLLRQDLMRRQEELRRMEELHNQEMQKRKEIQLRQEEERRRREEE 517
>MGI|MGI:1918764 [details] [associations]
symbol:Sfpq "splicing factor proline/glutamine rich
(polypyrimidine tract binding protein associated)" species:10090
"Mus musculus" [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000380 "alternative mRNA
splicing, via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0016363 "nuclear matrix" evidence=ISO]
[GO:0042382 "paraspeckles" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1918764 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 GO:GO:0016363 GO:GO:0000380 GO:GO:0042382
InterPro:IPR012975 Pfam:PF08075 eggNOG:NOG298586
GeneTree:ENSGT00390000005004 KO:K13219 HOGENOM:HOG000231095
HOVERGEN:HBG009801 CTD:6421 OMA:APGGHPK OrthoDB:EOG4RNB8S
ChiTaRS:SFPQ EMBL:AY034062 EMBL:AL606985 EMBL:BC089305
EMBL:AF272847 IPI:IPI00129430 RefSeq:NP_076092.1 UniGene:Mm.257276
UniGene:Mm.482296 ProteinModelPortal:Q8VIJ6 SMR:Q8VIJ6
IntAct:Q8VIJ6 STRING:Q8VIJ6 PhosphoSite:Q8VIJ6
REPRODUCTION-2DPAGE:Q8VIJ6 PaxDb:Q8VIJ6 PRIDE:Q8VIJ6
Ensembl:ENSMUST00000030623 GeneID:71514 KEGG:mmu:71514
UCSC:uc008utz.2 InParanoid:A2A7U6 NextBio:333919 Bgee:Q8VIJ6
Genevestigator:Q8VIJ6 GermOnline:ENSMUSG00000028820 Uniprot:Q8VIJ6
Length = 699
Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
Identities = 135/287 (47%), Positives = 188/287 (65%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 285 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 344
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 345 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 404
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 405 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 463
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FE+EY RWK L E+ + + E + K + + D+ + E E
Sbjct: 464 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEH 522
Query: 350 QA----EELKRRDEELMKK---HAEEMQLRLA---QQEEDLRRRQND 386
QA ++L RR EEL + H++EMQ R +QEE+ RRR+ +
Sbjct: 523 QANLLRQDLMRRQEELRRMEELHSQEMQKRKEMQLRQEEERRRREEE 569
Score = 125 (49.1 bits), Expect = 0.00016, P = 0.00016
Identities = 41/154 (26%), Positives = 74/154 (48%)
Query: 240 AAAQALRRCAEGC---FFLTQSLRPVIVEPLELTDEIDGLS--ERTINKKTPEFYKQRQV 294
A+ A R+ E C FL + ++ +E +++D + +K P + K+R+
Sbjct: 411 ASKPAARKAFERCSEGVFLLTTTPRPVI--VEPLEQLDDEDGLPEKLAQKNPMYQKERET 468
Query: 295 GPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKERQAEEL 354
PRFA +FE+EY RWK L E+ + + E + K + + D+ + E E QA L
Sbjct: 469 PPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEHQANLL 527
Query: 355 KRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNS 388
+ ++LM++ +E+LRR + +S
Sbjct: 528 R---QDLMRR------------QEELRRMEELHS 546
>RGD|727923 [details] [associations]
symbol:Sfpq "splicing factor proline/glutamine-rich"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0016363
"nuclear matrix" evidence=ISO] [GO:0042382 "paraspeckles"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:727923 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012975 Pfam:PF08075
KO:K13219 HOGENOM:HOG000231095 HOVERGEN:HBG009801 CTD:6421
OrthoDB:EOG4RNB8S IPI:IPI00627068 EMBL:BC098731
RefSeq:NP_001020442.1 UniGene:Rn.54645 ProteinModelPortal:Q4KM71
SMR:Q4KM71 STRING:Q4KM71 PhosphoSite:Q4KM71 PRIDE:Q4KM71
GeneID:252855 KEGG:rno:252855 UCSC:RGD:727923 InParanoid:Q4KM71
NextBio:623920 ArrayExpress:Q4KM71 Genevestigator:Q4KM71
Uniprot:Q4KM71
Length = 699
Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
Identities = 135/287 (47%), Positives = 188/287 (65%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 285 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 344
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 345 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 404
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 405 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 463
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FE+EY RWK L E+ + + E + K + + D+ + E E
Sbjct: 464 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEH 522
Query: 350 QA----EELKRRDEELMKK---HAEEMQLRLA---QQEEDLRRRQND 386
QA ++L RR EEL + H++EMQ R +QEE+ RRR+ +
Sbjct: 523 QANLLRQDLMRRQEELRRMEELHSQEMQKRKEMQLRQEEERRRREEE 569
Score = 125 (49.1 bits), Expect = 0.00016, P = 0.00016
Identities = 41/154 (26%), Positives = 74/154 (48%)
Query: 240 AAAQALRRCAEGC---FFLTQSLRPVIVEPLELTDEIDGLS--ERTINKKTPEFYKQRQV 294
A+ A R+ E C FL + ++ +E +++D + +K P + K+R+
Sbjct: 411 ASKPAARKAFERCSEGVFLLTTTPRPVI--VEPLEQLDDEDGLPEKLAQKNPMYQKERET 468
Query: 295 GPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKERQAEEL 354
PRFA +FE+EY RWK L E+ + + E + K + + D+ + E E QA L
Sbjct: 469 PPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEHQANLL 527
Query: 355 KRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNS 388
+ ++LM++ +E+LRR + +S
Sbjct: 528 R---QDLMRR------------QEELRRMEELHS 546
>UNIPROTKB|F1LQW3 [details] [associations]
symbol:Sfpq "Protein Sfpq" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016363 "nuclear matrix" evidence=IEA] [GO:0042382
"paraspeckles" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:727923 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012975 Pfam:PF08075
GeneTree:ENSGT00390000005004 IPI:IPI00627068 PRIDE:F1LQW3
Ensembl:ENSRNOT00000018049 Uniprot:F1LQW3
Length = 606
Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
Identities = 135/287 (47%), Positives = 188/287 (65%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 192 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 251
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 252 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 311
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 312 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 370
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FE+EY RWK L E+ + + E + K + + D+ + E E
Sbjct: 371 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEH 429
Query: 350 QA----EELKRRDEELMKK---HAEEMQLRLA---QQEEDLRRRQND 386
QA ++L RR EEL + H++EMQ R +QEE+ RRR+ +
Sbjct: 430 QANLLRQDLMRRQEELRRMEELHSQEMQKRKEMQLRQEEERRRREEE 476
Score = 125 (49.1 bits), Expect = 0.00013, P = 0.00013
Identities = 41/154 (26%), Positives = 74/154 (48%)
Query: 240 AAAQALRRCAEGC---FFLTQSLRPVIVEPLELTDEIDGLS--ERTINKKTPEFYKQRQV 294
A+ A R+ E C FL + ++ +E +++D + +K P + K+R+
Sbjct: 318 ASKPAARKAFERCSEGVFLLTTTPRPVI--VEPLEQLDDEDGLPEKLAQKNPMYQKERET 375
Query: 295 GPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKERQAEEL 354
PRFA +FE+EY RWK L E+ + + E + K + + D+ + E E QA L
Sbjct: 376 PPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEHQANLL 434
Query: 355 KRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNS 388
+ ++LM++ +E+LRR + +S
Sbjct: 435 R---QDLMRR------------QEELRRMEELHS 453
>UNIPROTKB|Q1LZD9 [details] [associations]
symbol:PSPC1 "Paraspeckle component 1" species:9913 "Bos
taurus" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0016363
"nuclear matrix" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0042382
"paraspeckles" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005730
GO:GO:0006355 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0016363 GO:GO:0042382
InterPro:IPR012975 Pfam:PF08075 eggNOG:NOG298586
GeneTree:ENSGT00390000005004 HOGENOM:HOG000231095
HOVERGEN:HBG009801 EMBL:BC116062 IPI:IPI00706558
RefSeq:NP_001068745.1 UniGene:Bt.55499 ProteinModelPortal:Q1LZD9
SMR:Q1LZD9 PRIDE:Q1LZD9 Ensembl:ENSBTAT00000005134 GeneID:506696
KEGG:bta:506696 CTD:55269 InParanoid:Q1LZD9 OMA:DNREQEM
OrthoDB:EOG444KKN NextBio:20867718 Uniprot:Q1LZD9
Length = 520
Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
Identities = 138/309 (44%), Positives = 206/309 (66%)
Query: 93 GPTLDLPPS-EPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMF 151
G T+D+ +P K + CRL++GN+ DITE+D LF+ YGE E+FIN+++ F
Sbjct: 59 GFTIDIKSFLKPGEKT--YTQRCRLFVGNLPTDITEDDFKRLFERYGEPSEVFINRDRGF 116
Query: 152 GFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVF 211
GFIR++ + A+ AKA+LDG +LK R L+IRFA AA+ VKNL+ V+NELLE AF F
Sbjct: 117 GFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQF 176
Query: 212 GDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTD 271
G +E+A+V+VD+RG + +G VEFA KP A +AL RC +G F LT + RPVIVEP+E D
Sbjct: 177 GPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 236
Query: 272 EIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL- 330
+ DGL E+ + +KT +++K+R+ PRFA +FEFEY SRWK L E+ + + E + + +
Sbjct: 237 DEDGLPEKLM-QKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIR 295
Query: 331 -AQREIDRERQKAEWE-----MKE---RQAEELKR----RDEELMKKHAEEMQLRLAQQE 377
A+ +++ E + A E M++ R+ EEL+R R++EL K+ +++QLR E
Sbjct: 296 EAKEKLEAEMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKR--KQIQLR---HE 350
Query: 378 EDLRRRQND 386
E+ RRR+ +
Sbjct: 351 EEHRRREEE 359
>UNIPROTKB|F1RN28 [details] [associations]
symbol:PSPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0042382 "paraspeckles" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0042382 InterPro:IPR012975 Pfam:PF08075
GeneTree:ENSGT00390000005004 OMA:DNREQEM EMBL:CU928808
Ensembl:ENSSSCT00000010490 Uniprot:F1RN28
Length = 460
Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
Identities = 138/309 (44%), Positives = 206/309 (66%)
Query: 93 GPTLDLPPS-EPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMF 151
G T+D+ +P K + CRL++GN+ DITE+D LF+ YGE E+FIN+++ F
Sbjct: 60 GFTIDIKSFLKPGEKT--YTQRCRLFVGNLPTDITEDDFKRLFERYGEPSEVFINRDRGF 117
Query: 152 GFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVF 211
GFIR++ + A+ AKA+LDG +LK R L+IRFA AA+ VKNL+ V+NELLE AF F
Sbjct: 118 GFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQF 177
Query: 212 GDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTD 271
G +E+A+V+VD+RG + +G VEFA KP A +AL RC +G F LT + RPVIVEP+E D
Sbjct: 178 GPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 237
Query: 272 EIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL- 330
+ DGL E+ + +KT +++K+R+ PRFA +FEFEY SRWK L E+ + + E + + +
Sbjct: 238 DEDGLPEKLM-QKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIR 296
Query: 331 -AQREIDRERQKAEWE-----MKE---RQAEELKR----RDEELMKKHAEEMQLRLAQQE 377
A+ +++ E + A E M++ R+ EEL+R R++EL K+ +++QLR E
Sbjct: 297 EAKEKLEAEMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKR--KQIQLR---HE 351
Query: 378 EDLRRRQND 386
E+ RRR+ +
Sbjct: 352 EEHRRREEE 360
>UNIPROTKB|Q8WXF1 [details] [associations]
symbol:PSPC1 "Paraspeckle component 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0042382
"paraspeckles" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016363 "nuclear matrix" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005730
GO:GO:0006355 GO:GO:0000166 GO:GO:0016607 EMBL:CH471075
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0016363
GO:GO:0042382 InterPro:IPR012975 Pfam:PF08075 EMBL:AL354808
eggNOG:NOG298586 PDB:3SDE PDBsum:3SDE HOGENOM:HOG000231095
HOVERGEN:HBG009801 CTD:55269 OMA:DNREQEM OrthoDB:EOG444KKN
EMBL:AF448795 EMBL:AF449627 EMBL:AK001817 EMBL:BC014184
EMBL:CR457272 EMBL:AL834505 IPI:IPI00103525 IPI:IPI00395775
RefSeq:NP_001035879.1 UniGene:Hs.213198 ProteinModelPortal:Q8WXF1
SMR:Q8WXF1 IntAct:Q8WXF1 MINT:MINT-1395719 STRING:Q8WXF1
PhosphoSite:Q8WXF1 DMDM:74762636 PaxDb:Q8WXF1 PRIDE:Q8WXF1
DNASU:55269 Ensembl:ENST00000338910 Ensembl:ENST00000427943
Ensembl:ENST00000471658 Ensembl:ENST00000492741 GeneID:55269
KEGG:hsa:55269 UCSC:uc021rgx.1 GeneCards:GC13M020249
H-InvDB:HIX0011177 HGNC:HGNC:20320 HPA:HPA038904 MIM:612408
neXtProt:NX_Q8WXF1 PharmGKB:PA134968603 InParanoid:Q8WXF1
PhylomeDB:Q8WXF1 ChiTaRS:PSPC1 GenomeRNAi:55269 NextBio:59380
ArrayExpress:Q8WXF1 Bgee:Q8WXF1 CleanEx:HS_PSPC1
Genevestigator:Q8WXF1 Uniprot:Q8WXF1
Length = 523
Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
Identities = 138/309 (44%), Positives = 205/309 (66%)
Query: 93 GPTLDLPPS-EPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMF 151
G T+D+ +P K + CRL++GN+ DITE D LF+ YGE E+FIN+++ F
Sbjct: 62 GFTIDIKSFLKPGEKT--YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGF 119
Query: 152 GFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVF 211
GFIR++ + A+ AKA+LDG +LK R L+IRFA AA+ VKNL+ V+NELLE AF F
Sbjct: 120 GFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQF 179
Query: 212 GDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTD 271
G +E+A+V+VD+RG + +G VEFA KP A +AL RC +G F LT + RPVIVEP+E D
Sbjct: 180 GPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 239
Query: 272 EIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL- 330
+ DGL E+ + +KT +++K+R+ PRFA +FEFEY SRWK L E+ + + E + + +
Sbjct: 240 DEDGLPEKLM-QKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIR 298
Query: 331 -AQREIDRERQKAEWE-----MKE---RQAEELKR----RDEELMKKHAEEMQLRLAQQE 377
A+ +++ E + A E M++ R+ EEL+R R++EL K+ +++QLR E
Sbjct: 299 EAKEKLEAEMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKR--KQIQLR---HE 353
Query: 378 EDLRRRQND 386
E+ RRR+ +
Sbjct: 354 EEHRRREEE 362
>MGI|MGI:1913895 [details] [associations]
symbol:Pspc1 "paraspeckle protein 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0042382 "paraspeckles" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1913895 GO:GO:0005737 GO:GO:0005730 GO:GO:0006355
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 GO:GO:0016363 GO:GO:0042382 InterPro:IPR012975
Pfam:PF08075 eggNOG:NOG298586 GeneTree:ENSGT00390000005004
HOGENOM:HOG000231095 HOVERGEN:HBG009801 CTD:55269 OMA:DNREQEM
OrthoDB:EOG444KKN HSSP:Q99K48 ChiTaRS:PSPC1 EMBL:AK011272
EMBL:AK017689 EMBL:AK150823 EMBL:AK160722 EMBL:BC026772
IPI:IPI00321266 IPI:IPI00857897 RefSeq:NP_079958.3 UniGene:Mm.20129
ProteinModelPortal:Q8R326 SMR:Q8R326 IntAct:Q8R326 MINT:MINT-218330
STRING:Q8R326 PhosphoSite:Q8R326 PaxDb:Q8R326 PRIDE:Q8R326
Ensembl:ENSMUST00000022507 Ensembl:ENSMUST00000163924 GeneID:66645
KEGG:mmu:66645 UCSC:uc007ucj.1 UCSC:uc007uck.1 InParanoid:Q8R326
NextBio:322261 Bgee:Q8R326 CleanEx:MM_PSPC1 Genevestigator:Q8R326
Uniprot:Q8R326
Length = 523
Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
Identities = 138/309 (44%), Positives = 205/309 (66%)
Query: 93 GPTLDLPPS-EPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMF 151
G T+D+ +P K + CRL++GN+ DITE D LF+ YGE E+FIN+++ F
Sbjct: 61 GFTIDIKSFLKPGEKT--YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGF 118
Query: 152 GFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVF 211
GFIR++ + A+ AKA+LDG +LK R L+IRFA AA+ VKNL+ V+NELLE AF F
Sbjct: 119 GFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQF 178
Query: 212 GDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTD 271
G +E+A+V+VD+RG + +G VEFA KP A +AL RC +G F LT + RPVIVEP+E D
Sbjct: 179 GPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 238
Query: 272 EIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL- 330
+ DGL E+ + +KT +++K+R+ PRFA +FEFEY SRWK L E+ + + E + + +
Sbjct: 239 DEDGLPEKLM-QKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIR 297
Query: 331 -AQREIDRERQKAEWE-----MKE---RQAEELKR----RDEELMKKHAEEMQLRLAQQE 377
A+ +++ E + A E M++ R+ EEL+R R++EL K+ +++QLR E
Sbjct: 298 EAKEKLEAEMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKR--KQIQLR---HE 352
Query: 378 EDLRRRQND 386
E+ RRR+ +
Sbjct: 353 EEHRRREEE 361
>RGD|1310122 [details] [associations]
symbol:Pspc1 "paraspeckle component 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005730
"nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016363 "nuclear matrix" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0042382
"paraspeckles" evidence=IEA;ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1310122 GO:GO:0005737 GO:GO:0005730 GO:GO:0006355 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0016363 GO:GO:0042382 InterPro:IPR012975 Pfam:PF08075
eggNOG:NOG298586 GeneTree:ENSGT00390000005004 HOGENOM:HOG000231095
HOVERGEN:HBG009801 CTD:55269 OMA:DNREQEM OrthoDB:EOG444KKN
HSSP:Q99K48 EMBL:BC099204 IPI:IPI00203753 RefSeq:NP_001020843.1
UniGene:Rn.140724 ProteinModelPortal:Q4KLH4 SMR:Q4KLH4
STRING:Q4KLH4 PhosphoSite:Q4KLH4 Ensembl:ENSRNOT00000028219
GeneID:305910 KEGG:rno:305910 UCSC:RGD:1310122 InParanoid:Q4KLH4
NextBio:655234 Genevestigator:Q4KLH4 Uniprot:Q4KLH4
Length = 522
Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
Identities = 138/309 (44%), Positives = 205/309 (66%)
Query: 93 GPTLDLPPS-EPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMF 151
G T+D+ +P K + CRL++GN+ DITE D LF+ YGE E+FIN+++ F
Sbjct: 61 GFTIDIKSFLKPGEKT--YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGF 118
Query: 152 GFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVF 211
GFIR++ + A+ AKA+LDG +LK R L+IRFA AA+ VKNL+ V+NELLE AF F
Sbjct: 119 GFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQF 178
Query: 212 GDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTD 271
G +E+A+V+VD+RG + +G VEFA KP A +AL RC +G F LT + RPVIVEP+E D
Sbjct: 179 GPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 238
Query: 272 EIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL- 330
+ DGL E+ + +KT +++K+R+ PRFA +FEFEY SRWK L E+ + + E + + +
Sbjct: 239 DEDGLPEKLM-QKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIR 297
Query: 331 -AQREIDRERQKAEWE-----MKE---RQAEELKR----RDEELMKKHAEEMQLRLAQQE 377
A+ +++ E + A E M++ R+ EEL+R R++EL K+ +++QLR E
Sbjct: 298 EAKEKLEAEMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKR--KQIQLR---HE 352
Query: 378 EDLRRRQND 386
E+ RRR+ +
Sbjct: 353 EEHRRREEE 361
>UNIPROTKB|E1BQ37 [details] [associations]
symbol:SFPQ "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0042382 "paraspeckles" evidence=IEA] [GO:0016363
"nuclear matrix" evidence=IEA] [GO:0000380 "alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0016363 GO:GO:0000380 GO:GO:0042382
InterPro:IPR012975 Pfam:PF08075 GeneTree:ENSGT00390000005004
KO:K13219 CTD:6421 OMA:APGGHPK EMBL:DAAA02009211 IPI:IPI00688960
RefSeq:NP_001193220.1 UniGene:Bt.59171 ProteinModelPortal:E1BQ37
Ensembl:ENSBTAT00000021719 GeneID:618226 KEGG:bta:618226
NextBio:20901069 Uniprot:E1BQ37
Length = 707
Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
Identities = 135/287 (47%), Positives = 187/287 (65%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 293 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 352
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 353 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 412
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 413 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 471
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FE+EY RWK L E+ + + E + K + + D+ + E E
Sbjct: 472 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEH 530
Query: 350 QA----EELKRRDEELMKK---HAEEMQLRLA---QQEEDLRRRQND 386
QA ++L RR EEL + H +EMQ R +QEE+ RRR+ +
Sbjct: 531 QANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEE 577
>UNIPROTKB|F1P7J0 [details] [associations]
symbol:SFPQ "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012975
Pfam:PF08075 GeneTree:ENSGT00390000005004 OMA:APGGHPK
EMBL:AAEX03009659 EMBL:AAEX03009658 Ensembl:ENSCAFT00000005784
Uniprot:F1P7J0
Length = 659
Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
Identities = 135/287 (47%), Positives = 187/287 (65%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 245 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 304
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 305 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 364
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 365 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 423
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FE+EY RWK L E+ + + E + K + + D+ + E E
Sbjct: 424 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEH 482
Query: 350 QA----EELKRRDEELMKK---HAEEMQLRLA---QQEEDLRRRQND 386
QA ++L RR EEL + H +EMQ R +QEE+ RRR+ +
Sbjct: 483 QANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEE 529
>UNIPROTKB|P23246 [details] [associations]
symbol:SFPQ "Splicing factor, proline- and glutamine-rich"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0006397
"mRNA processing" evidence=TAS] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0016363 "nuclear matrix" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0042382 "paraspeckles"
evidence=IDA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 GO:GO:0003677 EMBL:CH471059 GO:GO:0006281
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0000122
GO:GO:0006310 GO:GO:0016363 GO:GO:0000380 GO:GO:0042382
InterPro:IPR012975 Pfam:PF08075 eggNOG:NOG298586 KO:K13219
HOGENOM:HOG000231095 HOVERGEN:HBG009801 EMBL:X70944 EMBL:AL590434
EMBL:X16850 IPI:IPI00010740 IPI:IPI00216613 PIR:A46302 PIR:S29770
RefSeq:NP_005057.1 UniGene:Hs.355934 UniGene:Hs.611911
ProteinModelPortal:P23246 SMR:P23246 IntAct:P23246
MINT:MINT-1141893 STRING:P23246 PhosphoSite:P23246 DMDM:1709851
SWISS-2DPAGE:P23246 PaxDb:P23246 PeptideAtlas:P23246 PRIDE:P23246
Ensembl:ENST00000357214 GeneID:6421 KEGG:hsa:6421 UCSC:uc001bys.3
CTD:6421 GeneCards:GC01M035641 HGNC:HGNC:10774 HPA:CAB009886
MIM:605199 neXtProt:NX_P23246 PharmGKB:PA35690 InParanoid:P23246
OMA:APGGHPK OrthoDB:EOG4RNB8S PhylomeDB:P23246 ChiTaRS:SFPQ
GenomeRNAi:6421 NextBio:24935 ArrayExpress:P23246 Bgee:P23246
CleanEx:HS_SFPQ Genevestigator:P23246 GermOnline:ENSG00000116560
Uniprot:P23246
Length = 707
Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
Identities = 135/287 (47%), Positives = 187/287 (65%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE++ LF YGE E+FINK K FGFI+++ + A+ AKA+L
Sbjct: 293 YTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAEL 352
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 353 DDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 412
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC+EG F LT + RPVIVEPLE D+ DGL E+ + +K P +
Sbjct: 413 KGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQ 471
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKER 349
K+R+ PRFA +FE+EY RWK L E+ + + E + K + + D+ + E E
Sbjct: 472 KERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK-DKLESEMEDAYHEH 530
Query: 350 QA----EELKRRDEELMKK---HAEEMQLRLA---QQEEDLRRRQND 386
QA ++L RR EEL + H +EMQ R +QEE+ RRR+ +
Sbjct: 531 QANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEE 577
>ZFIN|ZDB-GENE-030131-713 [details] [associations]
symbol:nono "non-POU domain containing,
octamer-binding" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-713
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012975
Pfam:PF08075 HSSP:P52298 GeneTree:ENSGT00390000005004 CTD:4841
HOGENOM:HOG000231095 HOVERGEN:HBG009801 KO:K13214 OMA:LEFEMES
EMBL:BX470076 EMBL:BX511098 EMBL:BC046880 IPI:IPI00498278
RefSeq:NP_963873.1 UniGene:Dr.150274 SMR:Q802Z5
Ensembl:ENSDART00000011699 GeneID:321994 KEGG:dre:321994
InParanoid:Q802Z5 NextBio:20807618 Uniprot:Q802Z5
Length = 441
Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
Identities = 137/304 (45%), Positives = 195/304 (64%)
Query: 93 GPTLDLPP-SEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMF 151
G T+DL +P K + RL++GN+ TE D+ +LF YG+ E+FINK++ F
Sbjct: 52 GFTIDLQNFKKPGEKT--YTQRSRLFVGNLPAGTTEEDVEKLFSKYGKASEIFINKDRGF 109
Query: 152 GFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVF 211
GFIR++ K AD AKA+LD + +GR +++RFA AA+ VKNL V+NELLE AF +F
Sbjct: 110 GFIRLETKTLADIAKAELDDTIFRGRQIRVRFATHGAALTVKNLPQFVSNELLEEAFSMF 169
Query: 212 GDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTD 271
G IERAIVIVD+RG +GIVEFA KP+A +AL RC +G F LT RPV +EP+E D
Sbjct: 170 GPIERAIVIVDDRGRPTGKGIVEFANKPSARKALDRCGDGAFLLTAFPRPVTIEPMEQLD 229
Query: 272 EIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL- 330
E +GL ER INK P ++K+R+ PRFA SFE+EY RWK L E+ + + E + + +
Sbjct: 230 EEEGLPERLINKN-PVYHKEREQPPRFAQPGSFEYEYAMRWKALMEMEKQQYEQVDRNIK 288
Query: 331 -AQREIDRERQKAEWEMKER-QAEELKRRDEELMKK---HAEEMQLRLA---QQEEDLRR 382
A+ +++ E + A E + ++L RR EEL + H++E+Q R +QEE+ RR
Sbjct: 289 EAKEKLETELEAARHEHQVMLMRQDLLRRQEELRRMEEAHSQEVQKRKQMELRQEEERRR 348
Query: 383 RQND 386
R+ +
Sbjct: 349 REEE 352
>UNIPROTKB|F1N941 [details] [associations]
symbol:PSPC1 "Paraspeckle component 1" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0042382 "paraspeckles" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0042382 InterPro:IPR012975 Pfam:PF08075
GeneTree:ENSGT00390000005004 OMA:DNREQEM EMBL:AADN02005081
EMBL:AADN02005082 EMBL:AADN02005083 EMBL:AADN02005084
IPI:IPI00819057 Ensembl:ENSGALT00000036438 ArrayExpress:F1N941
Uniprot:F1N941
Length = 524
Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
Identities = 134/304 (44%), Positives = 197/304 (64%)
Query: 93 GPTLDLPPS-EPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMF 151
G T+D+ +P K + CRL++GN+ DITE D LF+ YGE E+FIN+++ F
Sbjct: 61 GFTIDIKSFLKPGEKS--YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGF 118
Query: 152 GFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVF 211
GFIR++ + A+ AKA+LDG +LK R L+IRFA AA+ VKNL+ V+NELLE AF F
Sbjct: 119 GFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQF 178
Query: 212 GDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTD 271
G +ERA+V+VD+RG + +G VEFA KP A +AL RC++G F LT + RPV+VEP+E D
Sbjct: 179 GPVERAVVVVDDRGRATGKGFVEFAAKPPARKALERCSDGAFLLTTTPRPVVVEPMEQFD 238
Query: 272 EIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL- 330
+ DGL E+ + +KT +++K+R+ PRFA +FEFEY SRWK L E+ + + E + + +
Sbjct: 239 DEDGLPEKLM-QKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIR 297
Query: 331 -AQREIDRERQKAEWE---MKERQA----EELKRRDEELM--KKHAEEMQLRLAQQEEDL 380
A+ +++ E + A E M RQ ++ R EE++ K+ E Q+ L +EE
Sbjct: 298 EAKEKLEAEMEAARHEHQLMLMRQEVCKIRTVELRREEMINSKQLVVEYQIELKHEEEHR 357
Query: 381 RRRQ 384
RR +
Sbjct: 358 RREE 361
>ZFIN|ZDB-GENE-040426-2452 [details] [associations]
symbol:sfpq "splicing factor proline/glutamine
rich (polypyrimidine tract binding protein associated)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007420 "brain development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2452 GO:GO:0007420 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012975 Pfam:PF08075
HOVERGEN:HBG009801 EMBL:AY648751 IPI:IPI00507036 UniGene:Dr.32607
ProteinModelPortal:Q6DRK8 SMR:Q6DRK8 STRING:Q6DRK8 PRIDE:Q6DRK8
InParanoid:Q6DRK8 ArrayExpress:Q6DRK8 Bgee:Q6DRK8 Uniprot:Q6DRK8
Length = 638
Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
Identities = 129/286 (45%), Positives = 189/286 (66%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE + +LF YGE E+FIN+ K FGFIR++ + A+ AKA+L
Sbjct: 235 YTQRCRLFIGNLPNDITEPEFRKLFAKYGEPSEIFINQGKGFGFIRLESRALAEVAKAEL 294
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D +KGR L++RFA +AA+ V+NL+ V+NELLE AF FG +ERAIVIVD+RG S
Sbjct: 295 DDTPMKGRPLRVRFATHSAALSVRNLSPFVSNELLEEAFSQFGLVERAIVIVDDRGRSTG 354
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEF+ KPAA +A+ R ++G F LT S RP++VE LE D+ DGL E+ + +K P +
Sbjct: 355 KGIVEFSSKPAARKAMDRISDGVFLLTSSPRPIVVELLEQYDDEDGLPEK-LAQKNPSYQ 413
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL--AQREIDRERQKAEWEMK 347
K+R+ PRFA +FE+EY RWK L E+ + + + + K + A+ +++ E A E +
Sbjct: 414 KEREQPPRFARPGTFEYEYSQRWKSLDEMEKQQRQQVEKNICEAREKLETEMDDAYHEHQ 473
Query: 348 ERQA-EELKRRDEELMKK---HAEEMQLRLA---QQEEDLRRRQND 386
++L RR EEL + H++EMQ R +QEE+ RRR+ +
Sbjct: 474 ANMLRQDLLRRQEELRRMEELHSQEMQKRKEMQLRQEEERRRREEE 519
Score = 128 (50.1 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 39/137 (28%), Positives = 67/137 (48%)
Query: 254 FLTQSLRPVIVEPLELTDEIDGLS--ERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSR 311
FL S IV +EL ++ D + +K P + K+R+ PRFA +FE+EY R
Sbjct: 378 FLLTSSPRPIV--VELLEQYDDEDGLPEKLAQKNPSYQKEREQPPRFARPGTFEYEYSQR 435
Query: 312 WKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQL 371
WK L E+ + + + + K + + R+K E EM D+ + A ++
Sbjct: 436 WKSLDEMEKQQRQQVEKNICEA-----REKLETEM-----------DDAYHEHQANMLRQ 479
Query: 372 RLAQQEEDLRRRQNDNS 388
L +++E+LRR + +S
Sbjct: 480 DLLRRQEELRRMEELHS 496
>UNIPROTKB|E1C0S2 [details] [associations]
symbol:PSPC1 "Paraspeckle component 1" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012975
Pfam:PF08075 GeneTree:ENSGT00390000005004 IPI:IPI00584056
EMBL:AADN02005081 EMBL:AADN02005082 EMBL:AADN02005083
EMBL:AADN02005084 Ensembl:ENSGALT00000027687 ArrayExpress:E1C0S2
Uniprot:E1C0S2
Length = 523
Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
Identities = 124/268 (46%), Positives = 180/268 (67%)
Query: 93 GPTLDLPPS-EPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMF 151
G T+D+ +P K + CRL++GN+ DITE D LF+ YGE E+FIN+++ F
Sbjct: 61 GFTIDIKSFLKPGEKS--YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGF 118
Query: 152 GFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVF 211
GFIR++ + A+ AKA+LDG +LK R L+IRFA AA+ VKNL+ V+NELLE AF F
Sbjct: 119 GFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQF 178
Query: 212 GDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTD 271
G +ERA+V+VD+RG + +G VEFA KP A +AL RC++G F LT + RPV+VEP+E D
Sbjct: 179 GPVERAVVVVDDRGRATGKGFVEFAAKPPARKALERCSDGAFLLTTTPRPVVVEPMEQFD 238
Query: 272 EIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELA 331
+ DGL E+ + +KT +++K+R+ PRFA +FEFEY SRWK L E+ + + E + + +
Sbjct: 239 DEDGLPEKLM-QKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNI- 296
Query: 332 QREIDRERQKAEWEMKERQAEELKRRDE 359
RE +E+ +AE E + + + R E
Sbjct: 297 -REA-KEKLEAEMEAARHEHQLMLMRQE 322
>ZFIN|ZDB-GENE-030131-9530 [details] [associations]
symbol:pspc1 "paraspeckle component 1"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-9530 GO:GO:0005737 GO:GO:0005730
GO:GO:0006355 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0016363 InterPro:IPR012975
Pfam:PF08075 eggNOG:NOG298586 GeneTree:ENSGT00390000005004
HOGENOM:HOG000231095 HOVERGEN:HBG009801 CTD:55269 OMA:DNREQEM
OrthoDB:EOG444KKN EMBL:BC116549 IPI:IPI00650514
RefSeq:NP_001038723.1 UniGene:Dr.75397 ProteinModelPortal:Q1JPY8
SMR:Q1JPY8 STRING:Q1JPY8 Ensembl:ENSDART00000102335 GeneID:692285
KEGG:dre:692285 InParanoid:Q1JPY8 NextBio:20902486
ArrayExpress:Q1JPY8 Bgee:Q1JPY8 Uniprot:Q1JPY8
Length = 512
Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
Identities = 130/291 (44%), Positives = 195/291 (67%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F CRL++GN+ D+ + D +LF YG+ +E+FIN+++ FGFIR++ + A+ AKA+L
Sbjct: 72 FTQRCRLFVGNLPSDMADEDFKKLFFKYGDAKEVFINRDRGFGFIRLETRTLAEIAKAEL 131
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
DG VL R ++IRFA AA+ V+NL+ V+NELLE AF FG +ERAIVIVD+RG
Sbjct: 132 DGTVLGNRPIRIRFATHGAALTVRNLSPVVSNELLEQAFSQFGPVERAIVIVDDRGRPTG 191
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +AL CA+G LT S RPVI+EP E D+ DGL E+ + +K+ +++
Sbjct: 192 KGIVEFANKPAARKALDHCADGALLLTTSPRPVILEPTEQYDDEDGLPEKLL-QKSAQYH 250
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL--AQREIDRERQKAEWE-- 345
K+R+ P FA +FEFEY SRWK L E+ + + E + + + A+ +++ E + A+ E
Sbjct: 251 KEREHKPHFAQPGTFEFEYSSRWKALDEMDKQQREQVERNIQEAKEKLETEMEAAKQEHQ 310
Query: 346 ---MKE---RQAEELKR----RDEELMKKHAEEMQLRLAQQEEDLRRRQND 386
M++ R+ EEL+R R++EL K+ ++++LR EE+ RRR+ D
Sbjct: 311 LMMMRQDLMRRQEELRRLEELRNQELQKR--KQIELR---HEEERRRREED 356
>UNIPROTKB|Q5ZIZ5 [details] [associations]
symbol:NONO "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0042382 "paraspeckles" evidence=IEA] [GO:0042802
"identical protein binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016363
GO:GO:0042382 InterPro:IPR012975 Pfam:PF08075 eggNOG:NOG298586
GeneTree:ENSGT00390000005004 CTD:4841 HOGENOM:HOG000231095
HOVERGEN:HBG009801 KO:K13214 OMA:NQQYHKE OrthoDB:EOG4ZCT50
EMBL:AADN02013229 EMBL:AADN02013230 EMBL:AJ720639 IPI:IPI00603370
RefSeq:NP_001026703.1 UniGene:Gga.4549 SMR:Q5ZIZ5
Ensembl:ENSGALT00000008838 GeneID:428701 KEGG:gga:428701
InParanoid:Q5ZIZ5 NextBio:20829624 Uniprot:Q5ZIZ5
Length = 473
Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
Identities = 130/305 (42%), Positives = 199/305 (65%)
Query: 92 QGPTLDLPP-SEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM 150
+G T+DL +P K F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K
Sbjct: 53 EGLTIDLKNFRKPGEKT--FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG 110
Query: 151 FGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGV 210
FGFIR++ + A+ AK +LD L+G+ L++RFA +A++ V+NL V+NELLE AF V
Sbjct: 111 FGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNLPQFVSNELLEEAFSV 170
Query: 211 FGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELT 270
FG +ERA+VIVD+RG S +GIVEF+ KPAA +AL RC++G F LT RPV VEP++
Sbjct: 171 FGQVERAVVIVDDRGRSSGKGIVEFSGKPAARKALDRCSDGSFLLTTFPRPVTVEPMDQY 230
Query: 271 DEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL 330
D+ +GL E+ + K +++K+R+ PRFA SFE+EY RWK L E+ + + E + + +
Sbjct: 231 DDEEGLPEKLVIKNQ-QYHKEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQEQVDRNI 289
Query: 331 --AQREIDRERQKAEWEMKER-QAEELKRRDEELMKK---HAEEMQLRLA---QQEEDLR 381
A+ +++ E + A E + ++L RR EEL + H +E+Q R +QEE+ R
Sbjct: 290 KEAREKLEMEMEAARHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKRKQLEIRQEEERR 349
Query: 382 RRQND 386
RR+ +
Sbjct: 350 RREEE 354
>UNIPROTKB|E2RIS4 [details] [associations]
symbol:E2RIS4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012975
Pfam:PF08075 GeneTree:ENSGT00390000005004 EMBL:AAEX03026810
ProteinModelPortal:E2RIS4 Ensembl:ENSCAFT00000029021 OMA:NEREMPP
Uniprot:E2RIS4
Length = 663
Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
Identities = 128/286 (44%), Positives = 184/286 (64%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ CRL++GN+ DITE+++ LF YGE E+FINK K FG I+++ + A+ AKA+L
Sbjct: 249 YTQRCRLFVGNLPADITEDELKRLFAKYGEPGEVFINKGKGFGLIKLESRALAEIAKAEL 308
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA AA+ V+NL+ V+NELLE AF FG IERA+VIVD+RG S
Sbjct: 309 DDTPMRGRQLRVRFATHPAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 368
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KPAA +A RC +G F LT RPVIVEPLE D+ DGL E+ + ++ P +
Sbjct: 369 KGIVEFASKPAARKAFERCGKGVFLLTTMPRPVIVEPLEQLDDEDGLPEK-LAQRNPMYQ 427
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL--AQREIDRERQKAEWEMK 347
+R++ PRFA + E+EY RWK L E+ + + E + K + A+ +++ E + A E +
Sbjct: 428 NEREMPPRFAQYGTLEYEYSQRWKSLDEMEKQQREQVEKIMKDAKDKLENEMEDAYHEHR 487
Query: 348 ERQAEE-LKRRDEELMKK---HAEEMQLRLA---QQEEDLRRRQND 386
+ L R EEL + H +EMQ R +QEE+ RRR+ +
Sbjct: 488 ANLLRQNLMRCQEELRRMEELHNQEMQKRKEMQLKQEEERRRREEE 533
>UNIPROTKB|G3N361 [details] [associations]
symbol:NONO "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0042802 "identical protein binding" evidence=IEA]
[GO:0042382 "paraspeckles" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016363 GO:GO:0042382 InterPro:IPR012975 Pfam:PF08075
GeneTree:ENSGT00390000005004 OMA:NQQYHKE EMBL:DAAA02072840
Ensembl:ENSBTAT00000063337 Uniprot:G3N361
Length = 528
Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
Identities = 130/305 (42%), Positives = 198/305 (64%)
Query: 92 QGPTLDLPP-SEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM 150
+G T+DL +P K F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K
Sbjct: 110 EGLTIDLKNFRKPGEKT--FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG 167
Query: 151 FGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGV 210
FGFIR++ + A+ AK +LD L+G+ L++RFA +A++ V+NL V+NELLE AF V
Sbjct: 168 FGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSV 227
Query: 211 FGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELT 270
FG +ERA+VIVD+RG +GIVEF+ KPAA +AL RC+EG F LT RPV VEP++
Sbjct: 228 FGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQL 287
Query: 271 DEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL 330
D+ +GL E+ + K +F+K+R+ PRFA SFE+EY RWK L E+ + + + + + +
Sbjct: 288 DDEEGLPEKLVIKNQ-QFHKEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNI 346
Query: 331 --AQREIDRERQKAEWEMKER-QAEELKRRDEELMKK---HAEEMQLRLA---QQEEDLR 381
A+ +++ E + A E + ++L RR EEL + H +E+Q R +QEE+ R
Sbjct: 347 KEAREKLEMEMEAARHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKRKQLELRQEEERR 406
Query: 382 RRQND 386
RR+ +
Sbjct: 407 RREEE 411
>UNIPROTKB|Q2KJ42 [details] [associations]
symbol:NONO "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0042802 "identical protein binding" evidence=ISS]
[GO:0042382 "paraspeckles" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0042802 GO:GO:0016363 GO:GO:0042382 InterPro:IPR012975
Pfam:PF08075 eggNOG:NOG298586 GeneTree:ENSGT00390000005004 CTD:4841
HOGENOM:HOG000231095 HOVERGEN:HBG009801 KO:K13214 OrthoDB:EOG4ZCT50
EMBL:DAAA02072840 EMBL:BC105532 IPI:IPI00699994
RefSeq:NP_001040019.1 UniGene:Bt.37860 SMR:Q2KJ42
Ensembl:ENSBTAT00000016122 GeneID:615175 KEGG:bta:615175
InParanoid:Q2KJ42 NextBio:20899485 Uniprot:Q2KJ42
Length = 470
Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
Identities = 130/305 (42%), Positives = 198/305 (64%)
Query: 92 QGPTLDLPP-SEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM 150
+G T+DL +P K F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K
Sbjct: 52 EGLTIDLKNFRKPGEKT--FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG 109
Query: 151 FGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGV 210
FGFIR++ + A+ AK +LD L+G+ L++RFA +A++ V+NL V+NELLE AF V
Sbjct: 110 FGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSV 169
Query: 211 FGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELT 270
FG +ERA+VIVD+RG +GIVEF+ KPAA +AL RC+EG F LT RPV VEP++
Sbjct: 170 FGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQL 229
Query: 271 DEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL 330
D+ +GL E+ + K +F+K+R+ PRFA SFE+EY RWK L E+ + + + + + +
Sbjct: 230 DDEEGLPEKLVIKNQ-QFHKEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNI 288
Query: 331 --AQREIDRERQKAEWEMKER-QAEELKRRDEELMKK---HAEEMQLRLA---QQEEDLR 381
A+ +++ E + A E + ++L RR EEL + H +E+Q R +QEE+ R
Sbjct: 289 KEAREKLEMEMEAARHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKRKQLELRQEEERR 348
Query: 382 RRQND 386
RR+ +
Sbjct: 349 RREEE 353
>UNIPROTKB|F1PTP3 [details] [associations]
symbol:NONO "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012975
Pfam:PF08075 GeneTree:ENSGT00390000005004 CTD:4841 KO:K13214
OMA:NQQYHKE EMBL:AAEX03026487 RefSeq:XP_849110.1
ProteinModelPortal:F1PTP3 Ensembl:ENSCAFT00000027037 GeneID:612773
KEGG:cfa:612773 Uniprot:F1PTP3
Length = 470
Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
Identities = 130/305 (42%), Positives = 198/305 (64%)
Query: 92 QGPTLDLPP-SEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM 150
+G T+DL +P K F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K
Sbjct: 52 EGLTIDLKNFRKPGEKT--FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG 109
Query: 151 FGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGV 210
FGFIR++ + A+ AK +LD L+G+ L++RFA +A++ V+NL V+NELLE AF V
Sbjct: 110 FGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSV 169
Query: 211 FGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELT 270
FG +ERA+VIVD+RG +GIVEF+ KPAA +AL RC+EG F LT RPV VEP++
Sbjct: 170 FGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQL 229
Query: 271 DEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL 330
D+ +GL E+ + K +F+K+R+ PRFA SFE+EY RWK L E+ + + + + + +
Sbjct: 230 DDEEGLPEKLVIKNQ-QFHKEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNI 288
Query: 331 --AQREIDRERQKAEWEMKER-QAEELKRRDEELMKK---HAEEMQLRLA---QQEEDLR 381
A+ +++ E + A E + ++L RR EEL + H +E+Q R +QEE+ R
Sbjct: 289 KEAREKLEMEMEAARHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKRKQLELRQEEERR 348
Query: 382 RRQND 386
RR+ +
Sbjct: 349 RREEE 353
>UNIPROTKB|Q15233 [details] [associations]
symbol:NONO "Non-POU domain-containing octamer-binding
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0042382 "paraspeckles"
evidence=IDA] [GO:0005634 "nucleus" evidence=TAS] [GO:0042802
"identical protein binding" evidence=IPI] [GO:0016363 "nuclear
matrix" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0016607 GO:GO:0006281 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0006310 GO:GO:0016363
EMBL:CH471132 Pathway_Interaction_DB:circadianpathway GO:GO:0042382
InterPro:IPR012975 Pfam:PF08075 eggNOG:NOG298586 EMBL:L14599
EMBL:U89867 EMBL:Y11289 EMBL:Y11290 EMBL:Y11291 EMBL:Y11292
EMBL:Y11293 EMBL:Y11294 EMBL:Y11295 EMBL:Y11296 EMBL:Y11297
EMBL:Y11298 EMBL:U02493 EMBL:AK297144 EMBL:CR456761 EMBL:AL590762
EMBL:BC002364 EMBL:BC003129 EMBL:BC012141 EMBL:BC028299
EMBL:BC069616 EMBL:BC069639 IPI:IPI00304596 IPI:IPI00922367
PIR:G01211 PIR:S29769 PIR:S41768 RefSeq:NP_001138880.1
RefSeq:NP_001138881.1 RefSeq:NP_001138882.1 RefSeq:NP_031389.3
UniGene:Hs.533282 UniGene:Hs.700344 PDB:3SDE PDBsum:3SDE
ProteinModelPortal:Q15233 SMR:Q15233 DIP:DIP-29951N IntAct:Q15233
MINT:MINT-1131452 STRING:Q15233 PhosphoSite:Q15233 DMDM:67469924
REPRODUCTION-2DPAGE:IPI00304596 SWISS-2DPAGE:Q15233 PaxDb:Q15233
PeptideAtlas:Q15233 PRIDE:Q15233 DNASU:4841 Ensembl:ENST00000276079
Ensembl:ENST00000373841 Ensembl:ENST00000373856
Ensembl:ENST00000535149 GeneID:4841 KEGG:hsa:4841 UCSC:uc004dzn.3
CTD:4841 GeneCards:GC0XP070503 HGNC:HGNC:7871 HPA:CAB022069
MIM:300084 neXtProt:NX_Q15233 PharmGKB:PA31680 HOGENOM:HOG000231095
HOVERGEN:HBG009801 InParanoid:Q15233 KO:K13214 OMA:NQQYHKE
OrthoDB:EOG4ZCT50 PhylomeDB:Q15233 GenomeRNAi:4841 NextBio:18654
PMAP-CutDB:Q15233 ArrayExpress:Q15233 Bgee:Q15233 CleanEx:HS_NONO
Genevestigator:Q15233 GermOnline:ENSG00000147140 Uniprot:Q15233
Length = 471
Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
Identities = 130/305 (42%), Positives = 198/305 (64%)
Query: 92 QGPTLDLPP-SEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM 150
+G T+DL +P K F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K
Sbjct: 53 EGLTIDLKNFRKPGEKT--FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG 110
Query: 151 FGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGV 210
FGFIR++ + A+ AK +LD L+G+ L++RFA +A++ V+NL V+NELLE AF V
Sbjct: 111 FGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSV 170
Query: 211 FGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELT 270
FG +ERA+VIVD+RG +GIVEF+ KPAA +AL RC+EG F LT RPV VEP++
Sbjct: 171 FGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQL 230
Query: 271 DEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL 330
D+ +GL E+ + K +F+K+R+ PRFA SFE+EY RWK L E+ + + + + + +
Sbjct: 231 DDEEGLPEKLVIKNQ-QFHKEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNI 289
Query: 331 --AQREIDRERQKAEWEMKER-QAEELKRRDEELMKK---HAEEMQLRLA---QQEEDLR 381
A+ +++ E + A E + ++L RR EEL + H +E+Q R +QEE+ R
Sbjct: 290 KEAREKLEMEMEAARHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKRKQLELRQEEERR 349
Query: 382 RRQND 386
RR+ +
Sbjct: 350 RREEE 354
>UNIPROTKB|I3LSU1 [details] [associations]
symbol:NONO "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0042802 "identical protein binding" evidence=IEA]
[GO:0042382 "paraspeckles" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016363 GO:GO:0042382 InterPro:IPR012975 Pfam:PF08075
GeneTree:ENSGT00390000005004 OMA:NQQYHKE Ensembl:ENSSSCT00000031783
Uniprot:I3LSU1
Length = 471
Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
Identities = 130/305 (42%), Positives = 198/305 (64%)
Query: 92 QGPTLDLPP-SEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM 150
+G T+DL +P K F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K
Sbjct: 53 EGLTIDLKNFRKPGEKT--FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG 110
Query: 151 FGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGV 210
FGFIR++ + A+ AK +LD L+G+ L++RFA +A++ V+NL V+NELLE AF V
Sbjct: 111 FGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSV 170
Query: 211 FGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELT 270
FG +ERA+VIVD+RG +GIVEF+ KPAA +AL RC+EG F LT RPV VEP++
Sbjct: 171 FGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQL 230
Query: 271 DEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL 330
D+ +GL E+ + K +F+K+R+ PRFA SFE+EY RWK L E+ + + + + + +
Sbjct: 231 DDEEGLPEKLVIKNQ-QFHKEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNI 289
Query: 331 --AQREIDRERQKAEWEMKER-QAEELKRRDEELMKK---HAEEMQLRLA---QQEEDLR 381
A+ +++ E + A E + ++L RR EEL + H +E+Q R +QEE+ R
Sbjct: 290 KEAREKLEMEMEAARHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKRKQLELRQEEERR 349
Query: 382 RRQND 386
RR+ +
Sbjct: 350 RREEE 354
>MGI|MGI:1855692 [details] [associations]
symbol:Nono "non-POU-domain-containing, octamer binding
protein" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=ISO] [GO:0042382 "paraspeckles" evidence=ISO]
[GO:0042802 "identical protein binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1855692 GO:GO:0005730 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0016607
GO:GO:0006281 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 GO:GO:0006310 GO:GO:0016363 GO:GO:0042382
InterPro:IPR012975 Pfam:PF08075 eggNOG:NOG298586
GeneTree:ENSGT00390000005004 CTD:4841 HOVERGEN:HBG009801 KO:K13214
OrthoDB:EOG4ZCT50 EMBL:S64860 EMBL:AK004830 EMBL:AK013444
EMBL:AK028338 EMBL:BC005465 EMBL:BC083074 IPI:IPI00320016
IPI:IPI00471251 RefSeq:NP_001239447.1 RefSeq:NP_075633.2
UniGene:Mm.280069 PDB:2CPJ PDB:2RS8 PDBsum:2CPJ PDBsum:2RS8
ProteinModelPortal:Q99K48 SMR:Q99K48 IntAct:Q99K48 STRING:Q99K48
PhosphoSite:Q99K48 PaxDb:Q99K48 PRIDE:Q99K48
Ensembl:ENSMUST00000033673 GeneID:53610 KEGG:mmu:53610
UCSC:uc009txr.2 InParanoid:Q99K48 ChiTaRS:NONO
EvolutionaryTrace:Q99K48 NextBio:310319 Bgee:Q99K48
Genevestigator:Q99K48 GermOnline:ENSMUSG00000031311 Uniprot:Q99K48
Length = 473
Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
Identities = 130/305 (42%), Positives = 198/305 (64%)
Query: 92 QGPTLDLPP-SEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM 150
+G T+DL +P K F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K
Sbjct: 55 EGLTIDLKNFRKPGEKT--FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG 112
Query: 151 FGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGV 210
FGFIR++ + A+ AK +LD L+G+ L++RFA +A++ V+NL V+NELLE AF V
Sbjct: 113 FGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSV 172
Query: 211 FGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELT 270
FG +ERA+VIVD+RG +GIVEF+ KPAA +AL RC+EG F LT RPV VEP++
Sbjct: 173 FGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQL 232
Query: 271 DEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL 330
D+ +GL E+ + K +F+K+R+ PRFA SFE+EY RWK L E+ + + + + + +
Sbjct: 233 DDEEGLPEKLVIKNQ-QFHKEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNI 291
Query: 331 --AQREIDRERQKAEWEMKER-QAEELKRRDEELMKK---HAEEMQLRLA---QQEEDLR 381
A+ +++ E + A E + ++L RR EEL + H +E+Q R +QEE+ R
Sbjct: 292 KEAREKLEMEMEAARHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKRKQLELRQEEERR 351
Query: 382 RRQND 386
RR+ +
Sbjct: 352 RREEE 356
>RGD|1549738 [details] [associations]
symbol:Nono "non-POU domain containing, octamer-binding"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005730 "nucleolus" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016363
"nuclear matrix" evidence=IEA;ISO] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0042382 "paraspeckles" evidence=IEA;ISO]
[GO:0042802 "identical protein binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1549738 GO:GO:0005730 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0003677 GO:GO:0016607 GO:GO:0006281
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0006310 InterPro:IPR012975 Pfam:PF08075 eggNOG:NOG298586
GeneTree:ENSGT00390000005004 CTD:4841 HOGENOM:HOG000231095
HOVERGEN:HBG009801 KO:K13214 OMA:NQQYHKE OrthoDB:EOG4ZCT50
EMBL:BC089880 IPI:IPI00205912 RefSeq:NP_001012356.1 UniGene:Rn.8381
ProteinModelPortal:Q5FVM4 SMR:Q5FVM4 IntAct:Q5FVM4 STRING:Q5FVM4
PhosphoSite:Q5FVM4 PRIDE:Q5FVM4 Ensembl:ENSRNOT00000004911
GeneID:317259 KEGG:rno:317259 UCSC:RGD:1549738 InParanoid:Q5FVM4
NextBio:671515 Genevestigator:Q5FVM4 GermOnline:ENSRNOG00000003689
Uniprot:Q5FVM4
Length = 476
Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
Identities = 130/305 (42%), Positives = 198/305 (64%)
Query: 92 QGPTLDLPP-SEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM 150
+G T+DL +P K F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K
Sbjct: 58 EGLTIDLKNFRKPGEKT--FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG 115
Query: 151 FGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGV 210
FGFIR++ + A+ AK +LD L+G+ L++RFA +A++ V+NL V+NELLE AF V
Sbjct: 116 FGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSV 175
Query: 211 FGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELT 270
FG +ERA+VIVD+RG +GIVEF+ KPAA +AL RC+EG F LT RPV VEP++
Sbjct: 176 FGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQL 235
Query: 271 DEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL 330
D+ +GL E+ + K +F+K+R+ PRFA SFE+EY RWK L E+ + + + + + +
Sbjct: 236 DDEEGLPEKLVIKNQ-QFHKEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNI 294
Query: 331 --AQREIDRERQKAEWEMKER-QAEELKRRDEELMKK---HAEEMQLRLA---QQEEDLR 381
A+ +++ E + A E + ++L RR EEL + H +E+Q R +QEE+ R
Sbjct: 295 KEAREKLEMEMEAARHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKRKQLELRQEEERR 354
Query: 382 RRQND 386
RR+ +
Sbjct: 355 RREEE 359
>UNIPROTKB|F1Q0F6 [details] [associations]
symbol:F1Q0F6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012975
Pfam:PF08075 GeneTree:ENSGT00390000005004 EMBL:AAEX03010245
ProteinModelPortal:F1Q0F6 Ensembl:ENSCAFT00000005152 OMA:LEFEMES
Uniprot:F1Q0F6
Length = 470
Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
Identities = 128/302 (42%), Positives = 195/302 (64%)
Query: 95 TLDLPP-SEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGF 153
T+DL +P K F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGF
Sbjct: 55 TIDLKSFRKPGEKT--FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGF 112
Query: 154 IRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGD 213
IR++ + A+ AK +LD L+G+ L++RFA +A++ V+NL V+NELLE AF VFG
Sbjct: 113 IRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQ 172
Query: 214 IERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEI 273
+ERA+VIVD+RG +GIVEF+ KPAA +AL RC+EG F LT RPV VEP++ D+
Sbjct: 173 VERAVVIVDDRGRPSGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDE 232
Query: 274 DGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL--A 331
+GL E+ + K +F+K+R+ PRFA S E+EY RWK L E+ + + + + + + A
Sbjct: 233 EGLPEKLVIKNQ-QFHKEREQPPRFAQPGSSEYEYAMRWKALIEMEKQQQDQVDRNIKEA 291
Query: 332 QREIDRERQKAEWEMKER-QAEELKRRDEELMKK---HAEEMQLRLA---QQEEDLRRRQ 384
+ +++ E + A E + ++L RR EEL + H +E+Q R +QEE+ RRR+
Sbjct: 292 REKLEMEMEAARHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKRKQLELRQEEERRRRE 351
Query: 385 ND 386
+
Sbjct: 352 EE 353
>UNIPROTKB|E2QXH2 [details] [associations]
symbol:PSPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012975
Pfam:PF08075 GeneTree:ENSGT00390000005004 OMA:DNREQEM
EMBL:AAEX03014280 Ensembl:ENSCAFT00000011791 Uniprot:E2QXH2
Length = 519
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 125/274 (45%), Positives = 183/274 (66%)
Query: 127 ENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPI 186
E D LF+ YGE E FIN++ FGFIR++ + A+ AKA+LDG +LK R L+IRFA
Sbjct: 92 EEDFKRLFERYGEPSE-FINRDAGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 150
Query: 187 NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALR 246
AA+ VKNL+ V+NELLE AF FG +E+A+V+VD+RG + +G VEFA KP A +AL
Sbjct: 151 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALE 210
Query: 247 RCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEF 306
RC +G F LT + RPVIVEP+E D+ DGL E+ + +KT +++K+R+ PRFA +FEF
Sbjct: 211 RCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM-QKTQQYHKEREQPPRFAQPGTFEF 269
Query: 307 EYGSRWKQLHELYEHETEMLRKEL--AQREIDRERQKAEWE-----MKE---RQAEELKR 356
EY SRWK L E+ + + E + + + A+ +++ E + A E M++ R+ EEL+R
Sbjct: 270 EYASRWKALDEMEKQQREQVDRNIREAKEKLEAEMEAARHEHQLMLMRQDLMRRQEELRR 329
Query: 357 ----RDEELMKKHAEEMQLRLAQQEEDLRRRQND 386
R++EL K+ +++QLR EE+ RRR+ +
Sbjct: 330 LEELRNQELQKR--KQIQLR---HEEEHRRREEE 358
>UNIPROTKB|F1Q1U4 [details] [associations]
symbol:F1Q1U4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012975
Pfam:PF08075 GeneTree:ENSGT00390000005004 EMBL:AAEX03003072
Ensembl:ENSCAFT00000027920 Uniprot:F1Q1U4
Length = 678
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 129/290 (44%), Positives = 184/290 (63%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ C L+LG + DI E++ L K +GE E+FINK K FGFI+++ + A+ AK +L
Sbjct: 266 YTRRCWLFLGTLPADIMEDEFKRLAK-FGEPGEVFINKGKGFGFIKLESRALAEIAKPEL 324
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++GR L++RFA A + +NL+ V+NE+LE AF FG IERA+VIVD+RG S
Sbjct: 325 DDTPMRGRQLRVRFATHAATLSARNLSPYVSNEVLEEAFSHFGPIERAVVIVDDRGRSTG 384
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+GIVEFA KP A +A RC EG F LT + RPVIVEPLE D+ DGLSE+ + +K P +
Sbjct: 385 KGIVEFASKPVARKAFERCGEGVFLLTTTPRPVIVEPLEQLDDEDGLSEK-LAQKNPMYQ 443
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL--AQREIDRERQKAEWEMK 347
K+R+ PR A +FE+EY RWK L E+ + + E + K + A+ +++ E + A E +
Sbjct: 444 KERETPPRVAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLENEMEDAYHEHQ 503
Query: 348 E---RQ-----AEELKRRDE---ELMKKHAEEMQLRLAQQEEDLRRRQND 386
RQ EEL+R +E + M+K +EMQLR QEE+ RRR+ +
Sbjct: 504 ANLLRQDLMRCQEELRRMEEFHNQEMQK-CKEMQLR---QEEERRRREEE 549
>WB|WBGene00017778 [details] [associations]
symbol:psf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0002009 "morphogenesis of
an epithelium" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0040027 "negative regulation
of vulval development" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0002009 GO:GO:0040007
GO:GO:0002119 GO:GO:0000166 EMBL:FO081045 Gene3D:3.30.70.330
GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 InterPro:IPR012975
Pfam:PF08075 GeneTree:ENSGT00390000005004 KO:K13219
UniGene:Cel.18121 GeneID:175844 KEGG:cel:CELE_F25B5.7 CTD:175844
NextBio:889920 RefSeq:NP_498295.3 ProteinModelPortal:B3GWA1
SMR:B3GWA1 STRING:B3GWA1 PRIDE:B3GWA1 EnsemblMetazoa:F25B5.7a
WormBase:F25B5.7a HOGENOM:HOG000018765 InParanoid:B3GWA1
OMA:ERMIPRT ArrayExpress:B3GWA1 Uniprot:B3GWA1
Length = 562
Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
Identities = 114/271 (42%), Positives = 175/271 (64%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168
KF CRL++GN+ ++ E ++ ELF P+G+ E +++ K F F+R+D + +A+ AK
Sbjct: 111 KFTGRCRLFVGNLPNEVKETELKELFSPHGDIAECYLSG-KGFAFLRLDTRAHAESAKEA 169
Query: 169 LDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSK 228
+DG ++ GR +++RFA AAI+VK L+ V+NE+L AF FGD+ERA+ IVDE+G
Sbjct: 170 IDGRIIHGRQVRVRFAVHGAAIRVKELSPTVSNEMLYHAFSHFGDVERAVHIVDEKGRPT 229
Query: 229 CEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEF 288
EGIVEF RKP +A+ + F LT S +P+I E LE DE DGL+ER I +TP
Sbjct: 230 GEGIVEFERKPNCNEAMAAIRDKVFLLTASPKPLICEVLEPRDEDDGLAERMI-PRTPGL 288
Query: 289 YKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEM-- 346
K+R++GPRF T NSFE+ YG +WK+L+ + + L +EL RE R R +++ E+
Sbjct: 289 SKERELGPRFPTPNSFEYVYGMKWKELYVVEQKRRAQLDEEL--RE-SRRRLESDMELAY 345
Query: 347 KERQAEELKRRDEELMKKHAEEMQLRLAQQE 377
++ QA+ L+ E+L ++ E +L A++E
Sbjct: 346 QDYQAQMLR---EDLQRRQQELERLEAARRE 373
>UNIPROTKB|Q91017 [details] [associations]
symbol:SFPQ "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000380 "alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=IEA] [GO:0042382 "paraspeckles" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016363 GO:GO:0000380 GO:GO:0042382 InterPro:IPR012975
Pfam:PF08075 eggNOG:NOG298586 GeneTree:ENSGT00390000005004
HOGENOM:HOG000231095 HOVERGEN:HBG009801 HSSP:O08583
OrthoDB:EOG4RNB8S EMBL:AADN02043825 EMBL:AADN02043826 EMBL:U35610
IPI:IPI00822812 PIR:S69282 UniGene:Gga.4684
Ensembl:ENSGALT00000040823 InParanoid:Q91017 Uniprot:Q91017
Length = 241
Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
Identities = 111/232 (47%), Positives = 149/232 (64%)
Query: 165 AKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDER 224
AKA+LD ++GR L++RFA AA+ V+NL+ V+NELLE AF FG +ERA+VIVD+R
Sbjct: 1 AKAELDDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPVERAVVIVDDR 60
Query: 225 GNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKK 284
G S +GIVEFA KPAA +A RC EG F LT + RPVIVEPLE D+ DGL E+ + +K
Sbjct: 61 GRSTGKGIVEFASKPAARKAFERCTEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK-LAQK 119
Query: 285 TPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEW 344
P + K+R+ PRFA SFEFEY RWK L E+ + + E + K + + D+ + E
Sbjct: 120 NPMYQKERETPPRFAQPGSFEFEYSQRWKSLDEMEKQQREQVAKNMKDAK-DKLESEMED 178
Query: 345 EMKERQA----EELKRRDEELMKK---HAEEMQLRLA---QQEEDLRRRQND 386
E QA ++L RR EEL + H +EMQ R +QEE+ RRR+ +
Sbjct: 179 AYHEHQANLLRQDLMRRQEELRRMEELHNQEMQKRKEIQLRQEEERRRREEE 230
>UNIPROTKB|F1PM01 [details] [associations]
symbol:F1PM01 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012975
Pfam:PF08075 GeneTree:ENSGT00390000005004 EMBL:AAEX03005167
Ensembl:ENSCAFT00000021845 Uniprot:F1PM01
Length = 391
Score = 397 (144.8 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 87/206 (42%), Positives = 130/206 (63%)
Query: 92 QGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMF 151
+G T+DL + F + RL++GN+ DIT ++ +LF+ Y + E+FI+K+K F
Sbjct: 52 EGLTIDLKNFRKSGEKT-FTQHSRLFVGNLPPDITGEEMRKLFEKYRKAGEVFIHKDKGF 110
Query: 152 GFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVF 211
GFI ++ + + A+ +LD L G+ L++ FA +A++ V+NL V NE+LE AF F
Sbjct: 111 GFIHLETQTLVEIAEVELDNMPLHGKQLRVCFAYHSASLTVRNLPQYVCNEVLEEAFSAF 170
Query: 212 GDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTD 271
G +ERA+VIVD RG +GIVEF+ KPAA +AL RC EG LT RPV VEP+ D
Sbjct: 171 GQVERAVVIVDVRGRPSGKGIVEFSGKPAAGKALDRCREGSCLLTTFPRPVTVEPMAQLD 230
Query: 272 EIDGLSERTINKKTPEFYKQRQVGPR 297
+ +GL E+ N+ +F+K+R+ PR
Sbjct: 231 DEEGLPEKLKNQ---QFHKEREQPPR 253
Score = 63 (27.2 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 338 ERQKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSM 389
E+ K + KER E+ RR EEL ++ QL L Q+EE RR+ + M
Sbjct: 237 EKLKNQQFHKER--EQPPRRQEELRSCTTKKKQLELRQEEE---RRRGEEEM 283
>UNIPROTKB|J9P3Z0 [details] [associations]
symbol:J9P3Z0 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012975
Pfam:PF08075 GeneTree:ENSGT00390000005004 EMBL:AAEX03009341
Ensembl:ENSCAFT00000046015 Uniprot:J9P3Z0
Length = 410
Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
Identities = 112/306 (36%), Positives = 182/306 (59%)
Query: 92 QGPTLDLPP-SEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM 150
+G T+DL +P K F RL++GN+ DIT+ ++ +L YG+ E+FI+K+K
Sbjct: 54 EGLTIDLKNFRKPGEKT--FTQCSRLFVGNLPPDITKEEMRKL--KYGKAGEIFIHKDKG 109
Query: 151 FGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGV 210
FGF ++ + A+ A+ +LD L+G+ L++RFA ++ + V+NELLE AF
Sbjct: 110 FGFTCLETRTLAEIARVELDYMSLRGKQLRVRFACHGVSL------TYVSNELLEEAFP- 162
Query: 211 FGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELT 270
FG +ERA+VI+D+RG +GIVEF+ KPAA +AL C EG F LT RPV VEP++
Sbjct: 163 FGQMERAVVIMDDRGRPSGKGIVEFSGKPAAWKALD-CREGSFLLTTFPRPVTVEPMDQL 221
Query: 271 DEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLR--- 327
D+ +GL E+ + K +F+K+R+ P FA SFE+E WK L E+ + + +
Sbjct: 222 DDEEGLPEKLVIKNQ-QFHKEREQPPSFAQPGSFEYEDAMCWKALIEMEKQQQGRVDHNI 280
Query: 328 KELAQREIDRERQKAEWEMKERQAEELKRRDEELMKK-HAEEMQLR---LAQQEEDLRRR 383
KE + E++ E + E ++ + + ++R++ M++ H +E+Q R + +QEE+ R R
Sbjct: 281 KEAREEEMEMEAARHEHQVMLMRQDLMRRQELRRMEELHNQEVQKRKQLVLRQEEERRHR 340
Query: 384 QNDNSM 389
+ M
Sbjct: 341 EQQEEM 346
>UNIPROTKB|F1M3I1 [details] [associations]
symbol:F1M3I1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012975
Pfam:PF08075 IPI:IPI00947725 ProteinModelPortal:F1M3I1
Ensembl:ENSRNOT00000068010 Uniprot:F1M3I1
Length = 296
Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
Identities = 108/276 (39%), Positives = 163/276 (59%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
F L++GN+ DITE ++ +LF G+ ++FI+K+K F FI ++ + + AK +L
Sbjct: 30 FTQCSHLFVGNLPPDITEEEMRKLF---GKAGKVFIHKDKGFDFICLETQTLTEIAKVEL 86
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
+ L+G+ L + +A++ V+NL V+NELLE AF VFG +ERA+V VD+R +
Sbjct: 87 ENLPLRGKQLCVLLTCHSASLTVQNLPQYVSNELLEEAFSVFGQVERAVVTVDDRRKALR 146
Query: 230 E-----GIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKK 284
E G EF+ KPAA +AL RC+EG F LT RP VEP++ D+ +GL E + K
Sbjct: 147 ERPSGKGTAEFSGKPAARKALDRCSEGSFLLTTFPRPATVEPMDQLDDEEGLPEELV-LK 205
Query: 285 TPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEW 344
+F+++R+ PRFA SFE EY RWK L E+ E +++ R I++ R+K E
Sbjct: 206 NQQFHEEREQPPRFAQPGSFEKEYTMRWKALIEI-----EKQQQDQVDRNIEQAREKMEM 260
Query: 345 EM-KERQA----EELKRRDEELMKK---HAEEMQLR 372
E +E Q ++L RR EEL + H +E+Q R
Sbjct: 261 EAAREHQVMLMRQDLMRRQEELRRTEELHNQEVQKR 296
Score = 182 (69.1 bits), Expect = 8.8e-12, P = 8.8e-12
Identities = 74/258 (28%), Positives = 132/258 (51%)
Query: 132 ELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIK 191
E+ K +G+ ++FI+K+K F FI ++ + + AK +L+ L+G+ L + +A++
Sbjct: 49 EMRKLFGKAGKVFIHKDKGFDFICLETQTLTEIAKVELENLPLRGKQLCVLLTCHSASLT 108
Query: 192 VKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIV-EFARKPAAAQALRRCAE 250
V+NL V+NELLE AF VFG +ERA+V VD+R + E + + + A R+ +
Sbjct: 109 VQNLPQYVSNELLEEAFSVFGQVERAVVTVDDRRKALRERPSGKGTAEFSGKPAARKALD 168
Query: 251 GCFFLTQSLRPVIVEPLELTDE-IDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYG 309
C ++ + P T E +D L + + PE + +F E E
Sbjct: 169 RC---SEGSFLLTTFPRPATVEPMDQLDDE---EGLPEELVLKN--QQFHE----EREQP 216
Query: 310 SRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKERQAEELKRRDE-ELMKKHAEE 368
R+ Q +E E M K L EI++++Q + +R E+ + + E E ++H +
Sbjct: 217 PRFAQPGS-FEKEYTMRWKALI--EIEKQQQ----DQVDRNIEQAREKMEMEAAREH-QV 268
Query: 369 MQLR--LAQQEEDLRRRQ 384
M +R L +++E+LRR +
Sbjct: 269 MLMRQDLMRRQEELRRTE 286
>UNIPROTKB|F1M8Q6 [details] [associations]
symbol:F1M8Q6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012975
Pfam:PF08075 GeneTree:ENSGT00390000005004 IPI:IPI00562995
Ensembl:ENSRNOT00000040557 Uniprot:F1M8Q6
Length = 478
Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
Identities = 99/266 (37%), Positives = 157/266 (59%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+A +CRL++GN+ DITE+++ LF YG++ E FINK K F FI+++ + + AK +L
Sbjct: 222 YAQHCRLFVGNLPADITEDELKRLFAKYGDSGEAFINKGKGFRFIKLESRALTEMAKVEL 281
Query: 170 DGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
D ++G+ L + FA A + ++N T+ V+ ELLE AF +G IER +VIV+ +
Sbjct: 282 DDTSIRGKQLWVGFAIHAAELSIRNPTTFVSRELLEEAFSQYGPIERVVVIVNAHRRTG- 340
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFY 289
+G+V+FA K AA +A R EG FFL VIVEPLE ++ DGL E+ +++ P +
Sbjct: 341 KGVVDFASKTAARKACERWGEG-FFLADK-DTVIVEPLEELEDKDGL-EKLLHRN-PMY- 395
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL--AQREIDRERQKAEWEMK 347
+R PRFA +F +E RWK L + + E + K + A+ +++ E +
Sbjct: 396 -ERATPPRFAQHGTFGYENPQRWKSLDVMIKQLREQVEKNMKDAKHKLESEMEDG---YH 451
Query: 348 ERQAEELKRRDEEL--MKK-HAEEMQ 370
E Q + L + EEL M++ H +EM+
Sbjct: 452 EHQCQNLMKCKEELRYMEELHCQEMK 477
>UNIPROTKB|F1LVR9 [details] [associations]
symbol:F1LVR9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012975
Pfam:PF08075 IPI:IPI00559747 Ensembl:ENSRNOT00000029858
Uniprot:F1LVR9
Length = 442
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 103/297 (34%), Positives = 167/297 (56%)
Query: 92 QGPTLDLPPSEPQNKDIKFANNC-RLYLGNIGGDITENDIIELFKPYGETQELFINKEKM 150
+G T+DL + K C L++GN+ DITE ++ +LF+ +G+ E+F ++EK
Sbjct: 54 EGLTIDLKNFRRE----KIFTQCSHLFVGNLPPDITEEEMRKLFEKHGKAGEVFTHEEKG 109
Query: 151 FGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGV 210
F FI ++ + AK +LD L + L+ F +A + V +L +++E LE AF
Sbjct: 110 FYFILLESGTLMEIAKVELDNTPLCAKQLQALFPCHSAILTVHSLPQYMSSEPLEEAFSG 169
Query: 211 FGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELT 270
FG +ERA+VIV+++ + E EF+ KPA +AL RC+EG F LT +PV VEP++
Sbjct: 170 FGQVERAVVIVNDKKALR-ERHFEFSLKPATQKALGRCSEGSFLLTTFPQPVTVEPMDWL 228
Query: 271 DEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL 330
D + L E+ I K +F+K+R+ PRFA S E+EYG WK L E+ E ++E
Sbjct: 229 DNEERLPEKLIINKM-QFHKEREQSPRFAQPGSCEYEYGMHWKALTEM-----EKQQQEQ 282
Query: 331 AQREIDRERQKAEWEMKERQ-AEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQND 386
R+I ++ + EM+ ++ +ELM+ H ++M+ L QE R++N+
Sbjct: 283 VDRKIKEACERLQMEMEATHYGHQVTLMRKELMR-H-QKME-ELHNQEVQKCRKRNE 336
>UNIPROTKB|C9IZL7 [details] [associations]
symbol:NONO "Non-POU domain-containing octamer-binding
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL590762 HGNC:HGNC:7871 HOGENOM:HOG000231095
IPI:IPI00645966 ProteinModelPortal:C9IZL7 SMR:C9IZL7 STRING:C9IZL7
PRIDE:C9IZL7 Ensembl:ENST00000454976 ArrayExpress:C9IZL7
Bgee:C9IZL7 Uniprot:C9IZL7
Length = 207
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 76/157 (48%), Positives = 110/157 (70%)
Query: 92 QGPTLDLPP-SEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM 150
+G T+DL +P K F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K
Sbjct: 53 EGLTIDLKNFRKPGEKT--FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG 110
Query: 151 FGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGV 210
FGFIR++ + A+ AK +LD L+G+ L++RFA +A++ V+NL V+NELLE AF V
Sbjct: 111 FGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSV 170
Query: 211 FGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRR 247
FG +ERA+VIVD+RG +GIVEF+ KPAA +AL R
Sbjct: 171 FGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKALDR 207
>UNIPROTKB|H7C367 [details] [associations]
symbol:NONO "Non-POU domain-containing octamer-binding
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012975 Pfam:PF08075 EMBL:AL590762 HGNC:HGNC:7871
ProteinModelPortal:H7C367 PRIDE:H7C367 Ensembl:ENST00000418921
Uniprot:H7C367
Length = 235
Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 77/188 (40%), Positives = 117/188 (62%)
Query: 208 FGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPL 267
FG +ERA+VIVD+RG +GIVEF+ KPAA +AL RC+EG F LT RPV VEP+
Sbjct: 30 FGFIRLVERAVVIVDDRGRPSGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPM 89
Query: 268 ELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLR 327
+ D+ +GL E+ + K +F+K+R+ PRFA SFE+EY RWK L E+ + + + +
Sbjct: 90 DQLDDEEGLPEKLVIKNQ-QFHKEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVD 148
Query: 328 KEL--AQREIDRERQKAEWEMKER-QAEELKRRDEELMKK---HAEEMQLRLA---QQEE 378
+ + A+ +++ E + A E + ++L RR EEL + H +E+Q R +QEE
Sbjct: 149 RNIKEAREKLEMEMEAARHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKRKQLELRQEE 208
Query: 379 DLRRRQND 386
+ RRR+ +
Sbjct: 209 ERRRREEE 216
Score = 147 (56.8 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 67/245 (27%), Positives = 110/245 (44%)
Query: 124 DITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVL-KGRSLKIR 182
DITE ++ +LF+ YG+ E+FI+K+K FGFIR+ ++A +D G+ + +
Sbjct: 3 DITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRL-----VERAVVIVDDRGRPSGKGI-VE 56
Query: 183 FAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAA 242
F+ AA K L C L F +E + DE G + I
Sbjct: 57 FSGKPAARKA--LDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQQFHKERE 114
Query: 243 QALRRCAEGCFFLTQSLR-PVIVE-PLELTDEIDGLSERTINKKTPEFYKQRQVGPRFAT 300
Q R G F ++R ++E + D++D R I + + + +
Sbjct: 115 QPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVD----RNIKEAREKLEMEMEAARHEHQ 170
Query: 301 VNSFEFEYGSRWKQLHELYE-HETEML-RKELAQREIDRERQKAEWEMKERQAEELKRRD 358
V + R ++L + E H E+ RK+L R+ + ER++ E EM+ RQ EE+ RR
Sbjct: 171 VMLMRQDLMRRQEELRRMEELHNQEVQKRKQLELRQ-EEERRRREEEMR-RQQEEMMRRQ 228
Query: 359 EELMK 363
+E K
Sbjct: 229 QEGFK 233
>UNIPROTKB|C9JYS8 [details] [associations]
symbol:NONO "Non-POU domain-containing octamer-binding
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 InterPro:IPR012975 Pfam:PF08075 EMBL:AL590762
HGNC:HGNC:7871 HOGENOM:HOG000231095 IPI:IPI00645010
ProteinModelPortal:C9JYS8 SMR:C9JYS8 STRING:C9JYS8 PRIDE:C9JYS8
Ensembl:ENST00000413858 ArrayExpress:C9JYS8 Bgee:C9JYS8
Uniprot:C9JYS8
Length = 248
Score = 205 (77.2 bits), Expect = 4.4e-27, Sum P(2) = 4.4e-27
Identities = 44/105 (41%), Positives = 71/105 (67%)
Query: 92 QGPTLDLPP-SEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM 150
+G T+DL +P K F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K
Sbjct: 53 EGLTIDLKNFRKPGEKT--FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG 110
Query: 151 FGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNL 195
FGFIR++ + A+ AK +LD L+G+ L++RFA +A++ V+NL
Sbjct: 111 FGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNL 155
Score = 125 (49.1 bits), Expect = 4.4e-27, Sum P(2) = 4.4e-27
Identities = 30/96 (31%), Positives = 51/96 (53%)
Query: 290 KQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKE- 348
++R+ PRFA SFE+EY RWK L E+ E +++ R I R+K E EM+
Sbjct: 157 QEREQPPRFAQPGSFEYEYAMRWKALIEM-----EKQQQDQVDRNIKEAREKLEMEMEAA 211
Query: 349 RQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQ 384
R ++ ++LM++ E ++ +E +R+Q
Sbjct: 212 RHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKRKQ 247
Score = 56 (24.8 bits), Expect = 7.2e-20, Sum P(2) = 7.2e-20
Identities = 20/68 (29%), Positives = 36/68 (52%)
Query: 319 YEHETEMLRKELAQREIDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEE 378
+E+E M K L E+++++Q + +R +E + + E M+ E Q+ L +Q
Sbjct: 171 FEYEYAMRWKALI--EMEKQQQ----DQVDRNIKEAREKLEMEMEAARHEHQVMLMRQ-- 222
Query: 379 DLRRRQND 386
DL RRQ +
Sbjct: 223 DLMRRQEE 230
>UNIPROTKB|I3L566 [details] [associations]
symbol:RAVER1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000006046 EMBL:CU657936
Ensembl:ENSSSCT00000030380 Uniprot:I3L566
Length = 714
Score = 173 (66.0 bits), Expect = 8.3e-10, P = 8.3e-10
Identities = 44/161 (27%), Positives = 81/161 (50%)
Query: 92 QGPTLDLPPSEPQ-------NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELF 144
+ P +LPP +P+ + + +F N ++ + + GD+T ++ +L Y E + F
Sbjct: 30 RAPEEELPPLDPEEIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDY-ELKYCF 88
Query: 145 INKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELL 204
++K K F+ + A+ A + L+ R L ++ P +A + V NL +T +
Sbjct: 89 VDKYKGTAFVTLLNGEQAEAAISAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQF 148
Query: 205 ELAFGVFGDIERAIVIVDER-GNSKCEGIVEFARKPAAAQA 244
E FG +ER ++ ER G+SK G E+ +K +AA+A
Sbjct: 149 EELVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARA 189
>UNIPROTKB|E2RM84 [details] [associations]
symbol:RAVER1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000006046 OMA:PDSYGFD EMBL:AAEX03012426
Ensembl:ENSCAFT00000028345 Uniprot:E2RM84
Length = 733
Score = 173 (66.0 bits), Expect = 8.7e-10, P = 8.7e-10
Identities = 46/168 (27%), Positives = 81/168 (48%)
Query: 85 TEKIMAIQGPTLDLPPSEPQ-------NKDIKFANNCRLYLGNIGGDITENDIIELFKPY 137
TE + P +LPP +P+ + + +F N ++ + + GD+T ++ +L Y
Sbjct: 40 TEDAAERRAPEEELPPLDPEEIQKRLEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDY 99
Query: 138 GETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTS 197
E + F++K K F+ + A+ A L+ R L ++ P +A + V NL
Sbjct: 100 -ELKYCFVDKYKGTAFVTLLNGEQAEAAIGAFHQSRLRERELSVQLQPTDALLCVANLPP 158
Query: 198 CVTNELLELAFGVFGDIERAIVIVDER-GNSKCEGIVEFARKPAAAQA 244
T + E FG +ER ++ ER G+SK G E+ +K +AA+A
Sbjct: 159 SFTQQQFEELVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARA 206
>UNIPROTKB|F1S3K5 [details] [associations]
symbol:RAVER1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000006046 OMA:PDSYGFD EMBL:CU657936
Ensembl:ENSSSCT00000014913 Uniprot:F1S3K5
Length = 745
Score = 173 (66.0 bits), Expect = 8.9e-10, P = 8.9e-10
Identities = 44/161 (27%), Positives = 81/161 (50%)
Query: 92 QGPTLDLPPSEPQ-------NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELF 144
+ P +LPP +P+ + + +F N ++ + + GD+T ++ +L Y E + F
Sbjct: 30 RAPEEELPPLDPEEIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDY-ELKYCF 88
Query: 145 INKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELL 204
++K K F+ + A+ A + L+ R L ++ P +A + V NL +T +
Sbjct: 89 VDKYKGTAFVTLLNGEQAEAAISAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQF 148
Query: 205 ELAFGVFGDIERAIVIVDER-GNSKCEGIVEFARKPAAAQA 244
E FG +ER ++ ER G+SK G E+ +K +AA+A
Sbjct: 149 EELVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARA 189
>UNIPROTKB|A4FUZ2 [details] [associations]
symbol:RAVER1 "RAVER1 protein" species:9913 "Bos taurus"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:125950
eggNOG:NOG135032 HOGENOM:HOG000253941 HOVERGEN:HBG059515
GeneTree:ENSGT00390000006046 OMA:PDSYGFD EMBL:DAAA02019455
EMBL:BC123485 IPI:IPI00715072 RefSeq:NP_001096578.1 UniGene:Bt.9045
SMR:A4FUZ2 STRING:A4FUZ2 Ensembl:ENSBTAT00000020887
GeneID:100125222 KEGG:bta:100125222 NextBio:20788773 Uniprot:A4FUZ2
Length = 716
Score = 172 (65.6 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 44/159 (27%), Positives = 80/159 (50%)
Query: 94 PTLDLPPSEPQ-------NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN 146
P +LPP +P+ + + +F N ++ + + GD+T ++ +L Y E + F++
Sbjct: 32 PEEELPPLDPEEIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDY-ELKYCFVD 90
Query: 147 KEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLEL 206
K K F+ + A+ A + L+ R L ++ P +A + V NL +T + E
Sbjct: 91 KYKGTAFVTLLNGEQAEAAISAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEE 150
Query: 207 AFGVFGDIERAIVIVDER-GNSKCEGIVEFARKPAAAQA 244
FG +ER ++ ER G+SK G E+ +K +AA+A
Sbjct: 151 LVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARA 189
>UNIPROTKB|Q8IY67 [details] [associations]
symbol:RAVER1 "Ribonucleoprotein PTB-binding 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC011511 EMBL:AB075858
EMBL:BC037428 EMBL:BC037565 IPI:IPI00217661 IPI:IPI00217670
IPI:IPI00643760 RefSeq:NP_597709.2 UniGene:Hs.707428 PDB:3H2U
PDB:3H2V PDB:3SMZ PDB:3VF0 PDBsum:3H2U PDBsum:3H2V PDBsum:3SMZ
PDBsum:3VF0 ProteinModelPortal:Q8IY67 SMR:Q8IY67 DIP:DIP-46973N
IntAct:Q8IY67 STRING:Q8IY67 DMDM:74759693 PaxDb:Q8IY67 PRIDE:Q8IY67
GeneID:125950 KEGG:hsa:125950 CTD:125950 GeneCards:GC19M010426
H-InvDB:HIX0202703 HGNC:HGNC:30296 MIM:609950 neXtProt:NX_Q8IY67
PharmGKB:PA144596390 eggNOG:NOG135032 HOGENOM:HOG000253941
HOVERGEN:HBG059515 ChiTaRS:RAVER1 EvolutionaryTrace:Q8IY67
GenomeRNAi:125950 NextBio:81582 ArrayExpress:Q8IY67
CleanEx:HS_RAVER1 Genevestigator:Q8IY67 GermOnline:ENSG00000161847
Uniprot:Q8IY67
Length = 606
Score = 171 (65.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 46/164 (28%), Positives = 85/164 (51%)
Query: 92 QGPTLDLPPSEPQ-------NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELF 144
+ P +LPP +P+ + + +F N ++ + + GD+T ++ +L Y E + F
Sbjct: 30 RAPEEELPPLDPEEIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDY-ELKYCF 88
Query: 145 INKEKMFGFIRMDYKHNADKAKAKLDG-HV--LKGRSLKIRFAPINAAIKVKNLTSCVTN 201
++K K F+ + N ++A+A ++ H L+ R L ++ P +A + V NL +T
Sbjct: 89 VDKYKGTAFVTL---LNGEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQ 145
Query: 202 ELLELAFGVFGDIERAIVIVDER-GNSKCEGIVEFARKPAAAQA 244
+ E FG +ER ++ ER G SK G E+ +K +AA+A
Sbjct: 146 QQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARA 189
>UNIPROTKB|E9PAU2 [details] [associations]
symbol:RAVER1 "Ribonucleoprotein PTB-binding 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC011511 IPI:IPI00217661 RefSeq:NP_597709.2 UniGene:Hs.707428
GeneID:125950 KEGG:hsa:125950 CTD:125950 HGNC:HGNC:30296
ChiTaRS:RAVER1 GenomeRNAi:125950 NextBio:81582 OMA:PDSYGFD
EMBL:AC114271 ProteinModelPortal:E9PAU2 SMR:E9PAU2 IntAct:E9PAU2
PRIDE:E9PAU2 Ensembl:ENST00000293677 UCSC:uc002moa.3
ArrayExpress:E9PAU2 Bgee:E9PAU2 Uniprot:E9PAU2
Length = 756
Score = 171 (65.3 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 46/164 (28%), Positives = 85/164 (51%)
Query: 92 QGPTLDLPPSEPQ-------NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELF 144
+ P +LPP +P+ + + +F N ++ + + GD+T ++ +L Y E + F
Sbjct: 47 RAPEEELPPLDPEEIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDY-ELKYCF 105
Query: 145 INKEKMFGFIRMDYKHNADKAKAKLDG-HV--LKGRSLKIRFAPINAAIKVKNLTSCVTN 201
++K K F+ + N ++A+A ++ H L+ R L ++ P +A + V NL +T
Sbjct: 106 VDKYKGTAFVTL---LNGEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQ 162
Query: 202 ELLELAFGVFGDIERAIVIVDER-GNSKCEGIVEFARKPAAAQA 244
+ E FG +ER ++ ER G SK G E+ +K +AA+A
Sbjct: 163 QQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARA 206
>MGI|MGI:1919016 [details] [associations]
symbol:Raver1 "ribonucleoprotein, PTB-binding 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1919016 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 PDB:3ZZY PDB:3ZZZ
PDBsum:3ZZY PDBsum:3ZZZ CTD:125950 eggNOG:NOG135032
HOGENOM:HOG000253941 HOVERGEN:HBG059515 ChiTaRS:RAVER1
EMBL:AY275472 EMBL:AK004919 EMBL:AK039928 EMBL:AK084478
EMBL:AK220434 EMBL:BC043698 EMBL:BC108392 IPI:IPI00406706
IPI:IPI00719915 RefSeq:NP_082187.1 UniGene:Mm.196137 PDB:1WI6
PDBsum:1WI6 ProteinModelPortal:Q9CW46 SMR:Q9CW46 IntAct:Q9CW46
MINT:MINT-1707126 STRING:Q9CW46 PhosphoSite:Q9CW46 PaxDb:Q9CW46
PRIDE:Q9CW46 Ensembl:ENSMUST00000115487 GeneID:71766 KEGG:mmu:71766
UCSC:uc009okd.1 GeneTree:ENSGT00390000006046 InParanoid:Q9CW46
OMA:PDSYGFD OrthoDB:EOG4KPT9P EvolutionaryTrace:Q9CW46
NextBio:334445 Bgee:Q9CW46 CleanEx:MM_RAVER1 Genevestigator:Q9CW46
GermOnline:ENSMUSG00000010205 Uniprot:Q9CW46
Length = 748
Score = 168 (64.2 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 44/161 (27%), Positives = 79/161 (49%)
Query: 92 QGPTLDLPPSEPQ-------NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELF 144
+ P +LPP +P+ + + +F N ++ + + GD+T ++ +L Y E + F
Sbjct: 30 RAPEQELPPLDPEEIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDY-ELKYCF 88
Query: 145 INKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELL 204
++K K F+ + A+ A L+ R L ++ P +A + V NL +T
Sbjct: 89 VDKYKGTAFVTLLNGEQAEAAINTFHQSRLRERELSVQLQPTDALLCVANLPPSLTQAQF 148
Query: 205 ELAFGVFGDIERAIVIVDER-GNSKCEGIVEFARKPAAAQA 244
E FG +ER ++ ER G+SK G E+ +K +AA+A
Sbjct: 149 EELVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARA 189
>RGD|1359190 [details] [associations]
symbol:Raver1 "ribonucleoprotein, PTB-binding 1" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1359190 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 CTD:125950 eggNOG:NOG135032
HOGENOM:HOG000253941 HOVERGEN:HBG059515
GeneTree:ENSGT00390000006046 OMA:PDSYGFD OrthoDB:EOG4KPT9P
EMBL:BC083865 IPI:IPI00365488 RefSeq:NP_001013961.1
UniGene:Rn.105739 ProteinModelPortal:Q5XI28 SMR:Q5XI28
STRING:Q5XI28 PhosphoSite:Q5XI28 PRIDE:Q5XI28
Ensembl:ENSRNOT00000046983 GeneID:298705 KEGG:rno:298705
UCSC:RGD:1359190 InParanoid:Q5XI28 NextBio:644237
ArrayExpress:Q5XI28 Genevestigator:Q5XI28
GermOnline:ENSRNOG00000020710 Uniprot:Q5XI28
Length = 748
Score = 167 (63.8 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 44/159 (27%), Positives = 78/159 (49%)
Query: 94 PTLDLPPSEPQ-------NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN 146
P +LPP +P+ + + +F N ++ + + GD+T ++ +L Y E + F++
Sbjct: 32 PEQELPPLDPEEIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDY-ELKYCFVD 90
Query: 147 KEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLEL 206
K K F+ + A+ A L+ R L ++ P +A + V NL +T E
Sbjct: 91 KYKGTAFVTLLNGEQAEAAINTFHQSRLRERELSVQLQPTDALLCVANLPPSLTQAQFEE 150
Query: 207 AFGVFGDIERAIVIVDER-GNSKCEGIVEFARKPAAAQA 244
FG +ER ++ ER G+SK G E+ +K +AA+A
Sbjct: 151 LVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARA 189
>UNIPROTKB|Q5XI28 [details] [associations]
symbol:Raver1 "Ribonucleoprotein PTB-binding 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359190 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
CTD:125950 eggNOG:NOG135032 HOGENOM:HOG000253941 HOVERGEN:HBG059515
GeneTree:ENSGT00390000006046 OMA:PDSYGFD OrthoDB:EOG4KPT9P
EMBL:BC083865 IPI:IPI00365488 RefSeq:NP_001013961.1
UniGene:Rn.105739 ProteinModelPortal:Q5XI28 SMR:Q5XI28
STRING:Q5XI28 PhosphoSite:Q5XI28 PRIDE:Q5XI28
Ensembl:ENSRNOT00000046983 GeneID:298705 KEGG:rno:298705
UCSC:RGD:1359190 InParanoid:Q5XI28 NextBio:644237
ArrayExpress:Q5XI28 Genevestigator:Q5XI28
GermOnline:ENSRNOG00000020710 Uniprot:Q5XI28
Length = 748
Score = 167 (63.8 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 44/159 (27%), Positives = 78/159 (49%)
Query: 94 PTLDLPPSEPQ-------NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFIN 146
P +LPP +P+ + + +F N ++ + + GD+T ++ +L Y E + F++
Sbjct: 32 PEQELPPLDPEEIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDY-ELKYCFVD 90
Query: 147 KEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLEL 206
K K F+ + A+ A L+ R L ++ P +A + V NL +T E
Sbjct: 91 KYKGTAFVTLLNGEQAEAAINTFHQSRLRERELSVQLQPTDALLCVANLPPSLTQAQFEE 150
Query: 207 AFGVFGDIERAIVIVDER-GNSKCEGIVEFARKPAAAQA 244
FG +ER ++ ER G+SK G E+ +K +AA+A
Sbjct: 151 LVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARA 189
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 154 (59.3 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 74/319 (23%), Positives = 137/319 (42%)
Query: 85 TEKIMAIQGPTLDLPPSEPQNKDIKFA-NNCRLYLGNIGGDITENDIIELFKPYGETQEL 143
TE+ A T +E Q + A N+ LY+G + + E + E+F P G+ +
Sbjct: 22 TEEQSAAAATTTADQSAEEQGESSGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSI 81
Query: 144 FINKE----KMFGFIRMDY-KH-NADKAKAKLDGHVLKGRSLKIRFAPINAAIK------ 191
+ ++ K G+ ++Y K+ + +KA +L+ + ++GR +I ++ + + +
Sbjct: 82 RVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELNYNPIEGRPCRIMWSQRDPSARRSGDGN 141
Query: 192 --VKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCA 249
+KNL + N+ L F FG I V DE G SKC G V + AA A+
Sbjct: 142 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKCFGFVHYETAEAAEAAIEN-V 200
Query: 250 EGCF------FLTQSLRPVIVEPL--ELTDEIDGLSERTINKKTPEFYKQRQVGPRFATV 301
G F+ + + E E+ + + I+ E ++ P F +
Sbjct: 201 NGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSP-FGKI 259
Query: 302 NSFEFEYGSRWKQ----LHELYEHETEMLR-KELAQREIDRERQKAEWEMKERQA-EELK 355
S E K +HE+ + +EL +EI+ ++ K+R+ EELK
Sbjct: 260 TSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELK 319
Query: 356 RRDEEL-MKKHAEEMQLRL 373
++ E + ++K A+ + L
Sbjct: 320 KQYEAVRLEKLAKYQGVNL 338
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 159 (61.0 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 50/177 (28%), Positives = 83/177 (46%)
Query: 84 FTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQEL 143
FT + + GPT PQ + LY+G + +TE + ELF G +
Sbjct: 38 FTGEEIDTAGPTPSSAAPHPQA-------SASLYVGELDPSVTEAMLFELFSQIGSVASI 90
Query: 144 FINKE----KMFGFIRMDYKHNADKAKA--KLDGHVLKGRSLKIRFAPINAAIK------ 191
+ ++ + G+ ++Y AD KA +L+ ++KGR +I ++ + A++
Sbjct: 91 RVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGN 150
Query: 192 --VKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALR 246
+KNL + N+ L F FG+I V DE GNSK G V + AA+QA++
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIK 207
Score = 38 (18.4 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 338 ERQKAEWEMKERQAEELKRRDEELMKKHAEEMQLRL---AQQEEDLRRRQNDN 387
+ KA E+ E++ KKH E +LR A ++E + Q N
Sbjct: 295 DASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVN 347
>ZFIN|ZDB-GENE-090713-1 [details] [associations]
symbol:raver2 "ribonucleoprotein, PTB-binding 2"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-090713-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00390000006046
EMBL:AL954175 EMBL:BX663603 IPI:IPI00961168
Ensembl:ENSDART00000111837 ArrayExpress:F1QAP4 Bgee:F1QAP4
Uniprot:F1QAP4
Length = 862
Score = 152 (58.6 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 45/169 (26%), Positives = 85/169 (50%)
Query: 86 EKIMAIQGPTL--DLPPSEPQN--KDIK-----FANNCRLYLGNIGGDITENDIIELFKP 136
E+ A +G T+ DLP EP+ K ++ +N ++ + N+ D T ++ E+ +
Sbjct: 57 EEDAASEGTTILRDLPELEPEEIEKRLEKTRRELSNRRKILIKNLPQDTTNQEVHEILRE 116
Query: 137 YGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLT 196
Y E + F+++ K F+ + A A L ++GR + ++ P ++ + V NL
Sbjct: 117 Y-ELKYCFVDRNKGTAFVTLLNGDQAQDAIRTLHQTSVRGRDINVQLQPTDSLLCVTNLP 175
Query: 197 SCVTNELLELAFGVFGDIERAIVIV-DERGNSKCEGIVEFARKPAAAQA 244
VT + +G+IER ++ D G+SK G VE+ +K +A++A
Sbjct: 176 YTVTATQFQELVRSYGNIERCFLVYSDLTGHSKGYGFVEYMKKDSASRA 224
>ZFIN|ZDB-GENE-050522-99 [details] [associations]
symbol:raver1 "ribonucleoprotein, PTB-binding 1"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050522-99 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00390000006046 EMBL:CR354432
IPI:IPI00997428 Ensembl:ENSDART00000127832 Bgee:E7FAA3
Uniprot:E7FAA3
Length = 725
Score = 151 (58.2 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 38/137 (27%), Positives = 70/137 (51%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168
+F N ++ + N+ DI+ ++ EL Y + + F++K K F+ + A A +
Sbjct: 87 EFYNRRKIIIKNLPADISNQEVHELLGNY-DLKYCFVDKYKGTAFVTLLNGEQAQFAIKE 145
Query: 169 LDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDER-GNS 227
+VL+ R + ++ P +A + + NL T + E FG+IER ++ G+S
Sbjct: 146 FHQYVLRDREISVQLQPTDALLCIANLPRAFTQQQFEELVRPFGNIERCFLVHSATTGHS 205
Query: 228 KCEGIVEFARKPAAAQA 244
K G VE+ +K +AA+A
Sbjct: 206 KGYGFVEYMKKDSAARA 222
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 98 (39.6 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 28/87 (32%), Positives = 44/87 (50%)
Query: 101 SEPQNKD-IKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFI 154
+E + +D F N +++ NIG DI + + ELF YG T+ + + K K FGF+
Sbjct: 24 AEVRTRDRATFTN---VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFV 80
Query: 155 RMDYKHNADKAKAKLDGHVLKGRSLKI 181
R + A KA L G + G+ L +
Sbjct: 81 RYETHEAAQKAVLDLHGKSIDGKVLYV 107
Score = 84 (34.6 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 24/67 (35%), Positives = 35/67 (52%)
Query: 179 LKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARK 238
LK + P I +KNL + +E L+ F FG I RA V++ E G K G+V F+
Sbjct: 129 LKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMM-EVGQGKGFGVVCFSSF 187
Query: 239 PAAAQAL 245
A +A+
Sbjct: 188 EEATKAV 194
>UNIPROTKB|G3MZ94 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 OMA:DSANKVY GeneID:521086
KEGG:bta:521086 EMBL:DAAA02072607 RefSeq:XP_003588203.1
Ensembl:ENSBTAT00000064260 Uniprot:G3MZ94
Length = 200
Score = 135 (52.6 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 40/144 (27%), Positives = 75/144 (52%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ ++TE + E F P G + I ++K+ G+ ++Y+ D +A L
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + +++ +KNL + N+ L F FG+I V
Sbjct: 64 NFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVAC 123
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE+G K G V F ++ +A +A+
Sbjct: 124 DEKG-PKGYGFVHFQKQESAERAI 146
>UNIPROTKB|Q5JQF8 [details] [associations]
symbol:PABPC1L2A "Polyadenylate-binding protein 1-like 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471104 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
HOGENOM:HOG000217922 HSSP:P11940 EMBL:AL662864 EMBL:BC041956
EMBL:BC136492 IPI:IPI00217142 RefSeq:NP_001012995.1
RefSeq:NP_001035971.1 UniGene:Hs.450320 UniGene:Hs.567854
ProteinModelPortal:Q5JQF8 SMR:Q5JQF8 PhosphoSite:Q5JQF8
PaxDb:Q5JQF8 PRIDE:Q5JQF8 Ensembl:ENST00000373519
Ensembl:ENST00000373521 Ensembl:ENST00000453389
Ensembl:ENST00000538388 GeneID:340529 GeneID:645974 KEGG:hsa:340529
KEGG:hsa:645974 UCSC:uc004ebf.3 CTD:340529 CTD:645974
GeneCards:GC0XM072297 GeneCards:GC0XP072223 H-InvDB:HIX0056425
HGNC:HGNC:27989 HGNC:HGNC:31852 HPA:HPA041573 neXtProt:NX_Q5JQF8
PharmGKB:PA162398594 InParanoid:Q5JQF8 OMA:RIMYSHC
OrthoDB:EOG4QVCCZ NextBio:97904 Bgee:Q5JQF8 CleanEx:HS_PABPC1L2A
CleanEx:HS_PABPC1L2B Genevestigator:Q5JQF8 Uniprot:Q5JQF8
Length = 200
Score = 135 (52.6 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 40/144 (27%), Positives = 75/144 (52%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ ++TE + E F P G + I ++K+ G+ ++Y+ D +A L
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + +++ +KNL + N+ L F FG+I V
Sbjct: 64 NFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVAC 123
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE+G K G V F ++ +A +A+
Sbjct: 124 DEKG-PKGYGFVHFQKQESAERAI 146
>UNIPROTKB|F1RPL9 [details] [associations]
symbol:LOC100623240 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 EMBL:FP236342 RefSeq:XP_003135232.1
RefSeq:XP_003360416.1 Ensembl:ENSSSCT00000023519
Ensembl:ENSSSCT00000025081 GeneID:100525442 GeneID:100623240
KEGG:ssc:100525442 KEGG:ssc:100623240 OMA:DSANKVY Uniprot:F1RPL9
Length = 200
Score = 135 (52.6 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 40/144 (27%), Positives = 75/144 (52%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ ++TE + E F P G + I ++K+ G+ ++Y+ D +A L
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + +++ +KNL + N+ L F FG+I V
Sbjct: 64 NFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVAC 123
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE+G K G V F ++ +A +A+
Sbjct: 124 DEKG-PKGYGFVHFQKQESAERAI 146
>UNIPROTKB|G3MYW4 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 EMBL:DAAA02072604
RefSeq:XP_002700050.1 RefSeq:XP_003584787.1 RefSeq:XP_599343.3
ProteinModelPortal:G3MYW4 Ensembl:ENSBTAT00000066058 GeneID:521086
GeneID:784438 KEGG:bta:521086 KEGG:bta:784438 OMA:ILSIRLC
NextBio:20873237 Uniprot:G3MYW4
Length = 200
Score = 133 (51.9 bits), Expect = 7.6e-07, P = 7.6e-07
Identities = 39/144 (27%), Positives = 75/144 (52%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ ++TE + E F P G + + ++K+ G+ ++Y+ D +A L
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + +++ +KNL + N+ L F FG+I V
Sbjct: 64 NFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVAC 123
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE+G K G V F ++ +A +A+
Sbjct: 124 DEKG-PKGYGFVHFQKQESAERAI 146
>UNIPROTKB|F1NMK1 [details] [associations]
symbol:RAVER2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000006046 OMA:HLMNPSI EMBL:AADN02012460
EMBL:AADN02012461 IPI:IPI00600839 ProteinModelPortal:F1NMK1
Ensembl:ENSGALT00000017964 Uniprot:F1NMK1
Length = 610
Score = 145 (56.1 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 34/117 (29%), Positives = 63/117 (53%)
Query: 129 DIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINA 188
+I +LFK Y E + ++++ K F+ + A A K + L+G+ + ++ P +A
Sbjct: 2 EIHDLFKDY-EIKYCYVDRNKRTAFVTLLNGEQAQNAIQKFHQYSLRGKEISVQLQPTDA 60
Query: 189 AIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQA 244
+ + NL T E E +G++ER ++ +E G+SK G VE+ +K +AA+A
Sbjct: 61 LLCITNLPISFTLEEFEELVRAYGNVERCFLVYNEVTGHSKGYGFVEYMKKDSAAKA 117
>MGI|MGI:2443623 [details] [associations]
symbol:Raver2 "ribonucleoprotein, PTB-binding 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:2443623 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG135032
HOGENOM:HOG000253941 HOVERGEN:HBG059515
GeneTree:ENSGT00390000006046 CTD:55225 OMA:HLMNPSI EMBL:AL627251
EMBL:BC055329 IPI:IPI00338741 RefSeq:NP_898845.1 UniGene:Mm.185636
ProteinModelPortal:Q7TPD6 SMR:Q7TPD6 MINT:MINT-1352291 PRIDE:Q7TPD6
Ensembl:ENSMUST00000038463 GeneID:242570 KEGG:mmu:242570
UCSC:uc008tvj.1 InParanoid:B1ASP1 OrthoDB:EOG4BVRT6 ChiTaRS:RAVER2
NextBio:385416 Bgee:Q7TPD6 CleanEx:MM_RAVER2 Genevestigator:Q7TPD6
GermOnline:ENSMUSG00000035275 Uniprot:Q7TPD6
Length = 673
Score = 144 (55.7 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 36/137 (26%), Positives = 68/137 (49%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168
+ +N ++ + N+ D + ++ EL + Y E + ++++ K F+ + A A +
Sbjct: 53 ELSNRRKILVKNLPQDSSSQEVHELLQDY-ELKYCYVDRNKRTAFVTLLNGEQAQSAIQR 111
Query: 169 LDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGNS 227
+GR L ++ P +A + + NL T E E +G+IER ++ E G+S
Sbjct: 112 FHQFSFRGRELTVQLQPTDALLCITNLPISFTLEEFEELVRAYGNIERCFLVYSEVTGHS 171
Query: 228 KCEGIVEFARKPAAAQA 244
K G VE+ +K AA+A
Sbjct: 172 KGYGFVEYMKKDFAAKA 188
>RGD|1307610 [details] [associations]
symbol:Raver2 "ribonucleoprotein, PTB-binding 2" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1307610
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000006046 CTD:55225 OMA:HLMNPSI
OrthoDB:EOG4BVRT6 IPI:IPI00358790 RefSeq:NP_001178796.1
UniGene:Rn.98798 ProteinModelPortal:D3ZD78
Ensembl:ENSRNOT00000033933 GeneID:362551 KEGG:rno:362551
UCSC:RGD:1307610 NextBio:680337 Uniprot:D3ZD78
Length = 673
Score = 144 (55.7 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 36/137 (26%), Positives = 68/137 (49%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168
+ +N ++ + N+ D + ++ EL + Y E + ++++ K F+ + A A +
Sbjct: 53 ELSNRRKILVKNLPQDSSSQEVHELLQDY-ELKYCYVDRNKRTAFVTLLNGEQAQSAIQR 111
Query: 169 LDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGNS 227
+GR L ++ P +A + + NL T E E +G+IER ++ E G+S
Sbjct: 112 FHQFSFRGRELTVQLQPTDALLCITNLPVSFTLEEFEELVRAYGNIERCFLVYSEVTGHS 171
Query: 228 KCEGIVEFARKPAAAQA 244
K G VE+ +K AA+A
Sbjct: 172 KGYGFVEYMKKDFAAKA 188
>UNIPROTKB|F2Z2W2 [details] [associations]
symbol:RBM14-RBM4 "Protein RBM14-RBM4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
ChiTaRS:RBM14-RBM4 HGNC:HGNC:38840 IPI:IPI00916274
ProteinModelPortal:F2Z2W2 SMR:F2Z2W2 Ensembl:ENST00000421355
ArrayExpress:F2Z2W2 Bgee:F2Z2W2 Uniprot:F2Z2W2
Length = 147
Score = 119 (46.9 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 39/132 (29%), Positives = 65/132 (49%)
Query: 115 RLYLGNI-GGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHV 173
++++GN+ G D T ++ LF PYG + K+ F F+ M A +A L GH
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQ--FAFVHMRENAGALRAIEALHGHE 59
Query: 174 LK-GRSLKIRFA---PINA-AIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSK 228
L+ GR+L + + P+N I V N+++ T++ L F G + V+ +G+
Sbjct: 60 LRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---KGS-- 114
Query: 229 CEGIVEFARKPA 240
C+ RKPA
Sbjct: 115 CQDGEAVHRKPA 126
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 143 (55.4 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 40/145 (27%), Positives = 75/145 (51%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + ++ +KNL + N+ L F FGDI V+
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALR 246
DE G S+ G V F + AA +A++
Sbjct: 133 DEYG-SRGYGFVHFETQEAANRAIQ 156
>GENEDB_PFALCIPARUM|PFD0700c [details] [associations]
symbol:PFD0700c "RNA binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016070 EMBL:AL844503
HSSP:Q14103 RefSeq:XP_001351452.1 ProteinModelPortal:Q8I1U3
EnsemblProtists:PFD0700c:mRNA GeneID:812564 KEGG:pfa:PFD0700c
EuPathDB:PlasmoDB:PF3D7_0414500 HOGENOM:HOG000282694
ProtClustDB:CLSZ2431852 Uniprot:Q8I1U3
Length = 358
Score = 139 (54.0 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 40/142 (28%), Positives = 67/142 (47%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKAKLD 170
+ ++G I IT I E F+ YG Q + I ++ + GF + + +K + D
Sbjct: 115 KFFIGGIPQYITSKHITEYFEQYGTVQHVVIAQDHETKRNRGFAFVTMASHINKERILRD 174
Query: 171 GHVLKGRSLKIR----FAP--INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDER 224
H L G+ + +R P I I V L T + LE F FG+I+ +++D
Sbjct: 175 THELNGKRVDVREENNTTPSDIQRKIFVGGLNYYWTKDTLESYFSTFGEIDVVQIVLDSS 234
Query: 225 GNSKCEGIVEFARKPAAAQALR 246
G S+C G V F+ + + A+ L+
Sbjct: 235 GRSRCFGFVVFSNENSVAKVLK 256
>UNIPROTKB|Q8I1U3 [details] [associations]
symbol:PFD0700c "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0016070 "RNA
metabolic process" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016070
EMBL:AL844503 HSSP:Q14103 RefSeq:XP_001351452.1
ProteinModelPortal:Q8I1U3 EnsemblProtists:PFD0700c:mRNA
GeneID:812564 KEGG:pfa:PFD0700c EuPathDB:PlasmoDB:PF3D7_0414500
HOGENOM:HOG000282694 ProtClustDB:CLSZ2431852 Uniprot:Q8I1U3
Length = 358
Score = 139 (54.0 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 40/142 (28%), Positives = 67/142 (47%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKAKLD 170
+ ++G I IT I E F+ YG Q + I ++ + GF + + +K + D
Sbjct: 115 KFFIGGIPQYITSKHITEYFEQYGTVQHVVIAQDHETKRNRGFAFVTMASHINKERILRD 174
Query: 171 GHVLKGRSLKIR----FAP--INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDER 224
H L G+ + +R P I I V L T + LE F FG+I+ +++D
Sbjct: 175 THELNGKRVDVREENNTTPSDIQRKIFVGGLNYYWTKDTLESYFSTFGEIDVVQIVLDSS 234
Query: 225 GNSKCEGIVEFARKPAAAQALR 246
G S+C G V F+ + + A+ L+
Sbjct: 235 GRSRCFGFVVFSNENSVAKVLK 256
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 142 (55.0 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 41/146 (28%), Positives = 75/146 (51%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ M G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETHEAAERAIEK 157
Score = 44 (20.5 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 277 SERTINKKTPEFYKQRQVGP-RFATVNSFEFEYGSRWKQLHELY 319
+ER I K R+V RF + E E G+R K+ +Y
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVY 194
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 141 (54.7 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 40/146 (27%), Positives = 76/146 (52%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
Score = 45 (20.9 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 272 EIDGLSERTINKKTPEFYKQRQVGP-RFATVNSFEFEYGSRWKQLHELY 319
E +ER I K R+V RF + E E G+R K+ +Y
Sbjct: 146 ETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVY 194
>ZFIN|ZDB-GENE-050522-496 [details] [associations]
symbol:rbm14a "RNA binding motif protein 14a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-050522-496 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
GeneTree:ENSGT00390000020883 EMBL:BX511175 EMBL:BC095368
EMBL:BC157376 IPI:IPI00487638 RefSeq:NP_001108616.1
UniGene:Dr.77963 STRING:Q503D7 Ensembl:ENSDART00000009234
Ensembl:ENSDART00000122073 GeneID:323721 KEGG:dre:323721 CTD:323721
HOGENOM:HOG000063724 HOVERGEN:HBG062132 InParanoid:Q503D7
OMA:HMERKEE OrthoDB:EOG4Q2DFQ NextBio:20808405 Uniprot:Q503D7
Length = 471
Score = 140 (54.3 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 45/156 (28%), Positives = 77/156 (49%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVL 174
+L++GN+ + T++D+I LF P+GE + + ++ F F+ + + AD A L+G
Sbjct: 8 KLFVGNLDLETTQDDLIALFAPFGEVVHITVLRQ--FAFVHLQGEGAADSAIRDLNGREY 65
Query: 175 KGRSLKIRFA---PINAA-IKVKNL-TSCVTNELLELAFGVFGDIERAIVIVDERGNSKC 229
+GRSL + + P+N+ + V NL SC +L +L F +G + + + +
Sbjct: 66 RGRSLVVEESKGRPLNSTKVFVGNLCASCSVEDLYDL-FSPYGKVLDCDKVKTKPSSLTG 124
Query: 230 EGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVE 265
V K A QA+ EG T RP+ VE
Sbjct: 125 YAFVYMEHKEDAEQAI----EGLHGTTFMGRPLAVE 156
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 139 (54.0 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 40/144 (27%), Positives = 75/144 (52%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE G SK G V F + AA +A+
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAI 155
Score = 46 (21.3 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 272 EIDGLSERTINKKTPEFYKQRQVGP-RFATVNSFEFEYGSRWKQLHELY 319
E +ER I+K R+V RF + E E G+R K+ +Y
Sbjct: 146 ETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVY 194
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 98 (39.6 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 28/87 (32%), Positives = 44/87 (50%)
Query: 101 SEPQNKD-IKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFI 154
+E + +D F N +++ NIG DI + + ELF YG T+ + + K K FGF+
Sbjct: 188 AEVRTRDRATFTN---VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFV 244
Query: 155 RMDYKHNADKAKAKLDGHVLKGRSLKI 181
R + A KA L G + G+ L +
Sbjct: 245 RYETHEAAQKAVLDLHGKSIDGKVLYV 271
Score = 84 (34.6 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 24/67 (35%), Positives = 35/67 (52%)
Query: 179 LKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARK 238
LK + P I +KNL + +E L+ F FG I RA V++ E G K G+V F+
Sbjct: 293 LKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMM-EVGQGKGFGVVCFSSF 351
Query: 239 PAAAQAL 245
A +A+
Sbjct: 352 EEATKAV 358
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 94 (38.1 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 26/85 (30%), Positives = 43/85 (50%)
Query: 101 SEPQNKD-IKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFI 154
+E + +D F N +++ N G DI + + +LF YG T+ + + K K FGF+
Sbjct: 188 AEVRTRDRATFTN---VFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFV 244
Query: 155 RMDYKHNADKAKAKLDGHVLKGRSL 179
R + A KA +L G + G+ L
Sbjct: 245 RYETHEAAQKAVLELHGKSIDGKVL 269
Score = 88 (36.0 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 179 LKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARK 238
LK + P I +KNL + +E L+ F +FG I RA V++ E G K G+V F+
Sbjct: 293 LKDKTRPPGVPIYIKNLDETINDEKLKEEFSLFGSISRAKVMM-EVGQGKGFGVVCFSSF 351
Query: 239 PAAAQAL 245
A++A+
Sbjct: 352 EEASKAV 358
>ZFIN|ZDB-GENE-030131-3902 [details] [associations]
symbol:rbm4.1 "RNA binding motif protein 4.1"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-030131-3902 GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10
eggNOG:NOG294108 GeneTree:ENSGT00390000020883 KO:K13187
EMBL:BC046057 EMBL:BC071513 IPI:IPI00501593 RefSeq:NP_955999.1
UniGene:Dr.132298 ProteinModelPortal:Q6IQ97 SMR:Q6IQ97 PRIDE:Q6IQ97
Ensembl:ENSDART00000052862 GeneID:573001 KEGG:dre:573001 CTD:573001
HOGENOM:HOG000026790 HOVERGEN:HBG062217 InParanoid:Q6IQ97
OMA:PYEERDP OrthoDB:EOG4NP74W NextBio:20891027 ArrayExpress:Q6IQ97
Bgee:Q6IQ97 Uniprot:Q6IQ97
Length = 419
Score = 138 (53.6 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 33/112 (29%), Positives = 58/112 (51%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVL 174
++++GN+ + T +I LF YG+ E I K FGF+ MD K AD+A L ++L
Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIVKN--FGFVHMDSKSEADEAIQNLHHYML 60
Query: 175 KGRSLKIRFA---P-INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD 222
G ++ + + P + + V N++S TN+ L F +G + ++ D
Sbjct: 61 NGMAMNVEMSKGKPKTSTKLHVGNISSSCTNQELRAKFEEYGPVVECDIVKD 112
>RGD|1566367 [details] [associations]
symbol:Pabpc1l2a "poly(A) binding protein, cytoplasmic 1-like
2A" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1566367 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00640000091232
IPI:IPI00769098 Ensembl:ENSRNOT00000029100 Uniprot:F1M8Y9
Length = 200
Score = 129 (50.5 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 37/144 (25%), Positives = 75/144 (52%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ ++TE+ + E F P G + + ++K+ G+ ++Y+ D +A +
Sbjct: 4 LYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALETM 63
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+ GR ++I ++ + +++ +KNL + N+ L F FG+I V
Sbjct: 64 NFDVINGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVAC 123
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE+G K G V F ++ +A +A+
Sbjct: 124 DEKG-PKGYGFVHFQKQESAERAI 146
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 140 (54.3 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 39/145 (26%), Positives = 75/145 (51%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + ++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALR 246
DE G S+ G V F + AA +A++
Sbjct: 133 DENG-SRGHGFVHFETQEAATRAIQ 156
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 124 (48.7 bits), Expect = 7.6e-05, P = 7.6e-05
Identities = 37/144 (25%), Positives = 73/144 (50%)
Query: 116 LYLGNIGGDITENDIIELFKPYGET------QELFINKEKMFGFIRMDYKHNADKAKAKL 169
LY+G++ D+TE+ + F G ++L ++ +G++ +A KA +
Sbjct: 12 LYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQKALETM 71
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++KG+S+++ ++ +A ++ +KNL + N+ L F FG I + V+
Sbjct: 72 NFDLIKGKSIRLMWSQRDACLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMT 131
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE G SK G V + + AA +A+
Sbjct: 132 DEEG-SKGYGFVHYQDQRAADRAI 154
Score = 91 (37.1 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 22/84 (26%), Positives = 42/84 (50%)
Query: 101 SEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE-----KMFGFIR 155
+E + K +F N +Y+ N G D+ + + +F YG+T + + K+ K FGF+
Sbjct: 180 AELREKPAEFTN---VYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVS 236
Query: 156 MDYKHNADKAKAKLDGHVLKGRSL 179
D A A ++G + G+++
Sbjct: 237 FDSHKAAKNAVEDMNGRDINGQTI 260
Score = 90 (36.7 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 188 AAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
A + +KNL + +E L F VFG I R + ++ E G SK G++ F AAA+A+
Sbjct: 293 AKLYIKNLDDTIDDETLRKEFSVFGSICR-VKVMQEAGQSKGFGLICFFSPEAAAKAM 349
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 138 (53.6 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 39/146 (26%), Positives = 76/146 (52%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
Score = 45 (20.9 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 272 EIDGLSERTINKKTPEFYKQRQVGP-RFATVNSFEFEYGSRWKQLHELY 319
E +ER I K R+V RF + E E G+R K+ +Y
Sbjct: 146 ETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVY 194
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 138 (53.6 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 39/146 (26%), Positives = 76/146 (52%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
Score = 45 (20.9 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 272 EIDGLSERTINKKTPEFYKQRQVGP-RFATVNSFEFEYGSRWKQLHELY 319
E +ER I K R+V RF + E E G+R K+ +Y
Sbjct: 146 ETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVY 194
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 138 (53.6 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 39/146 (26%), Positives = 76/146 (52%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
Score = 45 (20.9 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 272 EIDGLSERTINKKTPEFYKQRQVGP-RFATVNSFEFEYGSRWKQLHELY 319
E +ER I K R+V RF + E E G+R K+ +Y
Sbjct: 146 ETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVY 194
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 138 (53.6 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 39/146 (26%), Positives = 76/146 (52%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
Score = 45 (20.9 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 272 EIDGLSERTINKKTPEFYKQRQVGP-RFATVNSFEFEYGSRWKQLHELY 319
E +ER I K R+V RF + E E G+R K+ +Y
Sbjct: 146 ETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVY 194
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 138 (53.6 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 39/146 (26%), Positives = 76/146 (52%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
Score = 45 (20.9 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 272 EIDGLSERTINKKTPEFYKQRQVGP-RFATVNSFEFEYGSRWKQLHELY 319
E +ER I K R+V RF + E E G+R K+ +Y
Sbjct: 146 ETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVY 194
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 138 (53.6 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 39/146 (26%), Positives = 76/146 (52%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
Score = 45 (20.9 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 272 EIDGLSERTINKKTPEFYKQRQVGP-RFATVNSFEFEYGSRWKQLHELY 319
E +ER I K R+V RF + E E G+R K+ +Y
Sbjct: 146 ETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVY 194
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 138 (53.6 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 39/146 (26%), Positives = 76/146 (52%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
Score = 45 (20.9 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 272 EIDGLSERTINKKTPEFYKQRQVGP-RFATVNSFEFEYGSRWKQLHELY 319
E +ER I K R+V RF + E E G+R K+ +Y
Sbjct: 146 ETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVY 194
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 136 (52.9 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 39/144 (27%), Positives = 75/144 (52%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE G SK G V F + AA +A+
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAI 155
Score = 47 (21.6 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 22/74 (29%), Positives = 32/74 (43%)
Query: 272 EIDGLSERTINKKTPEFYKQRQVGP-RFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL 330
E +ER I+K R+V RF + E E G+R K+ +Y K
Sbjct: 146 ETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYI-------KNF 198
Query: 331 AQREIDRERQKAEW 344
+ ++D ER K EW
Sbjct: 199 GE-DMDDERLK-EW 210
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 139 (54.0 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 40/145 (27%), Positives = 75/145 (51%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKAKLDG 171
LY+G++ D+TE + + F P G+ + + ++ + G+ ++++ AD A+ LD
Sbjct: 13 LYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPAD-AECALDT 71
Query: 172 ---HVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVI 220
V+KGR ++I ++ + ++ +KN+ + N+ L F FG+I V+
Sbjct: 72 MNYEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVV 131
Query: 221 VDERGNSKCEGIVEFARKPAAAQAL 245
DE G SK G V F + AA +A+
Sbjct: 132 CDENG-SKGYGFVHFETQEAANRAI 155
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 138 (53.6 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 39/146 (26%), Positives = 76/146 (52%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
Score = 45 (20.9 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 272 EIDGLSERTINKKTPEFYKQRQVGP-RFATVNSFEFEYGSRWKQLHELY 319
E +ER I K R+V RF + E E G+R K+ +Y
Sbjct: 146 ETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVY 194
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 132 (51.5 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 38/146 (26%), Positives = 72/146 (49%)
Query: 116 LYLGNIGGDITENDIIELFKPYGET------QELFINKEKMFGFIRMDYKHNADKAKAKL 169
LY+G++ D+TE + E F P G ++L + + ++ + +A+ A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ VKNL + N+ L FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F AA +A+++
Sbjct: 133 DENG-SKGYGFVHFETHEAAERAIKK 157
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 139 (54.0 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 39/145 (26%), Positives = 75/145 (51%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + ++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALR 246
DE G S+ G V F + AA +A++
Sbjct: 133 DEHG-SRGYGFVHFETQEAANRAIQ 156
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 95 (38.5 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 26/87 (29%), Positives = 44/87 (50%)
Query: 101 SEPQNKD-IKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFI 154
+E + +D F N +++ N G D+ ++ + ELF YG T+ + + K K FGF+
Sbjct: 188 AEVRTRDKATFTN---VFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFV 244
Query: 155 RMDYKHNADKAKAKLDGHVLKGRSLKI 181
R + A KA L G + G+ L +
Sbjct: 245 RYETHEAAQKAVLDLHGKSIDGKVLYV 271
Score = 85 (35.0 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 24/67 (35%), Positives = 35/67 (52%)
Query: 179 LKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARK 238
LK + P I +KNL + +E L+ F FG I RA V+V E G K G++ F+
Sbjct: 293 LKEKSRPPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMV-EVGQGKGFGVICFSSF 351
Query: 239 PAAAQAL 245
A +A+
Sbjct: 352 EEATKAV 358
>UNIPROTKB|I3L873 [details] [associations]
symbol:RAVER2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00390000006046
OMA:HLMNPSI EMBL:FP312968 Ensembl:ENSSSCT00000022489 Uniprot:I3L873
Length = 560
Score = 138 (53.6 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 41/160 (25%), Positives = 76/160 (47%)
Query: 91 IQGPT-LDLPPSEP----QNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI 145
++GP L P E Q + +N ++ + N+ D ++ +L + Y E + ++
Sbjct: 42 VRGPAPAPLQPEEVAARLQRMRRELSNRRKILVKNLPQDSNCQEVHDLLQDY-ELKYCYV 100
Query: 146 NKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLE 205
++ K F+ + A KA + +G+ L ++ P +A + + NL + T E E
Sbjct: 101 DRNKRTAFVTLLNGEQAQKAIQTFHQYSFRGKDLIVQLQPTDALLCITNLPTSFTLEEFE 160
Query: 206 LAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQA 244
+G+IER ++ E G SK G VE+ +K AA+A
Sbjct: 161 ELVRAYGNIERCFLVYSEVTGFSKGYGFVEYMKKDFAAKA 200
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 138 (53.6 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 39/148 (26%), Positives = 76/148 (51%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYK-HNAD-KA 165
++ LY+G++ ++E + ++F P G + + ++ + G+ +++ H A KA
Sbjct: 36 SSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKA 95
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
+L+ +KGR +I ++ + +++ +KNL + N+ L F VFGDI +
Sbjct: 96 IEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSS 155
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ DE G SK G V F + AA +A+
Sbjct: 156 KIATDENGKSKGFGFVHFEEEGAAKEAI 183
>UNIPROTKB|F8WDX3 [details] [associations]
symbol:RBM14 "RNA-binding protein 14" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:14219 ChiTaRS:RBM14 IPI:IPI00916896
ProteinModelPortal:F8WDX3 SMR:F8WDX3 Ensembl:ENST00000443702
ArrayExpress:F8WDX3 Bgee:F8WDX3 Uniprot:F8WDX3
Length = 129
Score = 114 (45.2 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 32/99 (32%), Positives = 52/99 (52%)
Query: 115 RLYLGNI-GGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHV 173
++++GN+ G D T ++ LF PYG + K+ F F+ M A +A L GH
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQ--FAFVHMRENAGALRAIEALHGHE 59
Query: 174 LK-GRSLKIRFA---PINA-AIKVKNLTS-CVTNELLEL 206
L+ GR+L + + P+N I V N+++ C + EL L
Sbjct: 60 LRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSL 98
>UNIPROTKB|Q2PYN1 [details] [associations]
symbol:RBM14 "RNA-binding protein 14" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HOVERGEN:HBG002295 CTD:10432 KO:K13189 UniGene:Hs.533712
DNASU:10432 GeneID:10432 KEGG:hsa:10432 HGNC:HGNC:14219
ChiTaRS:RBM14 GenomeRNAi:10432 NextBio:39542 HOGENOM:HOG000089965
EMBL:DQ294957 IPI:IPI00969146 RefSeq:NP_001185766.1 SMR:Q2PYN1
STRING:Q2PYN1 Ensembl:ENST00000409738 UCSC:uc009yrh.3
Uniprot:Q2PYN1
Length = 119
Score = 114 (45.2 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 32/99 (32%), Positives = 52/99 (52%)
Query: 115 RLYLGNI-GGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHV 173
++++GN+ G D T ++ LF PYG + K+ F F+ M A +A L GH
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQ--FAFVHMRENAGALRAIEALHGHE 59
Query: 174 LK-GRSLKIRFA---PINA-AIKVKNLTS-CVTNELLEL 206
L+ GR+L + + P+N I V N+++ C + EL L
Sbjct: 60 LRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSL 98
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 93 (37.8 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 25/87 (28%), Positives = 43/87 (49%)
Query: 101 SEPQNKD-IKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFI 154
+E + +D F N +++ N G D+ + + E+F YG T+ + + K K FGF+
Sbjct: 188 AEVRTRDRATFTN---VFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFV 244
Query: 155 RMDYKHNADKAKAKLDGHVLKGRSLKI 181
R + A KA L G + G+ L +
Sbjct: 245 RYETHEAAQKAVLDLHGKSINGKVLYV 271
Score = 85 (35.0 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 25/67 (37%), Positives = 35/67 (52%)
Query: 179 LKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARK 238
LK + P I +KNL + +E L+ F FG I RA V+V E G K G+V F+
Sbjct: 293 LKEKSRPPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMV-EVGQGKGFGVVCFSSF 351
Query: 239 PAAAQAL 245
A +A+
Sbjct: 352 EDATKAV 358
>UNIPROTKB|H7BY49 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 Ensembl:ENST00000361692 Uniprot:H7BY49
Length = 152
Score = 112 (44.5 bits), Expect = 7.5e-06, P = 7.5e-06
Identities = 38/137 (27%), Positives = 66/137 (48%)
Query: 117 YLGNIGGDITENDIIELFKPYGETQ--ELFINK--EKMFGFIRMDYKHNADKAKAKLDGH 172
Y+GN+ D+TE I++LF G + ++ ++ + F+ +A A A ++G
Sbjct: 2 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGR 61
Query: 173 VLKGRSLKIRFAPINAAIK----------VKNLTSCVTNELLELAFGVFGDIERAIVIVD 222
+ G+ +K+ +A ++ K V +L+ +T E ++ AF FG I A V+ D
Sbjct: 62 KIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKD 121
Query: 223 -ERGNSKCEGIVEFARK 238
G SK G V F K
Sbjct: 122 MATGKSKGYGFVSFFNK 138
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 124 (48.7 bits), Expect = 7.6e-05, P = 7.6e-05
Identities = 39/155 (25%), Positives = 79/155 (50%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE+ + F G + I ++++ G+ +++ AD KA +
Sbjct: 12 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 71
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++KG+S+++ ++ +A ++ +KNL + N+ L F FG I + V+
Sbjct: 72 NFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMS 131
Query: 222 DERGNSKCEGIVEFARKPAAAQALR----RCAEGC 252
D++G SK V F + AA +A+ + +GC
Sbjct: 132 DDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGC 165
Score = 99 (39.9 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 24/82 (29%), Positives = 44/82 (53%)
Query: 101 SEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIR 155
+E ++K +F N +Y+ N GGD+ + + ++F YG+T + + K K FGF+
Sbjct: 180 AELRSKASEFTN---VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVS 236
Query: 156 MDYKHNADKAKAKLDGHVLKGR 177
D A KA +++G + G+
Sbjct: 237 FDSHEAAKKAVEEMNGRDINGQ 258
Score = 77 (32.2 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 192 VKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+KNL + +E L F FG I R + ++ E G SK G++ F+ A +A+
Sbjct: 297 IKNLDDTIDDEKLRNEFSSFGSISR-VKVMQEEGQSKGFGLICFSSPEDATKAM 349
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 135 (52.6 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 44/152 (28%), Positives = 74/152 (48%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKA 165
FAN LY+ N+ IT + + +F P+G + +E K FGF++ D + +A A
Sbjct: 111 FAN---LYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSA 167
Query: 166 KAKLDGHVLKGRSLKI-RFAPIN--AA---------IKVKNLTSCVTNELLELAFGVFGD 213
++ L G ++ G+ L + +F + AA + VKNL VT++ L F +G
Sbjct: 168 RSALHGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGT 227
Query: 214 IERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ +V+ D G S+ G V F A +A+
Sbjct: 228 VSSVVVMRDGMGRSRGFGFVNFCNPENAKKAM 259
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 132 (51.5 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 38/146 (26%), Positives = 72/146 (49%)
Query: 116 LYLGNIGGDITENDIIELFKPYGET------QELFINKEKMFGFIRMDYKHNADKAKAKL 169
LY+G++ D+TE + E F P G ++L + + ++ + +A+ A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ VKNL + N+ L FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F AA +A+++
Sbjct: 133 DENG-SKGYGFVHFETHEAAERAIKK 157
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 133 (51.9 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 38/146 (26%), Positives = 75/146 (51%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQDAADRAIEK 157
Score = 46 (21.3 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 348 ERQAEELKRRDEELMKKHAEEMQ 370
ERQAE LKRR E+L ++ Q
Sbjct: 271 ERQAE-LKRRFEQLKQERISRYQ 292
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 134 (52.2 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 39/146 (26%), Positives = 75/146 (51%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGYGFVHFETQEAAERAIEK 157
Score = 45 (20.9 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 272 EIDGLSERTINKKTPEFYKQRQVGP-RFATVNSFEFEYGSRWKQLHELY 319
E +ER I K R+V RF + E E G+R K+ +Y
Sbjct: 146 ETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVY 194
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 135 (52.6 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 38/146 (26%), Positives = 75/146 (51%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 135 (52.6 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 38/146 (26%), Positives = 75/146 (51%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F + AA +A+ +
Sbjct: 133 DENG-SKGHGFVHFETEEAAERAIEK 157
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 135 (52.6 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 38/146 (26%), Positives = 75/146 (51%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 135 (52.6 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 38/146 (26%), Positives = 75/146 (51%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 135 (52.6 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 38/146 (26%), Positives = 75/146 (51%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAANKAIEK 157
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 135 (52.6 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 38/146 (26%), Positives = 75/146 (51%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 135 (52.6 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 38/146 (26%), Positives = 75/146 (51%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAADKAIEK 157
>UNIPROTKB|F1N2C2 [details] [associations]
symbol:RAVER2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00390000006046
OMA:HLMNPSI EMBL:DAAA02008530 EMBL:DAAA02008531 EMBL:DAAA02008532
EMBL:DAAA02008533 EMBL:DAAA02008534 EMBL:DAAA02008535
EMBL:DAAA02008536 IPI:IPI01002242 ProteinModelPortal:F1N2C2
Ensembl:ENSBTAT00000043383 ArrayExpress:F1N2C2 Uniprot:F1N2C2
Length = 653
Score = 135 (52.6 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 33/137 (24%), Positives = 69/137 (50%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168
+ +N ++ + N+ D + ++ +L + Y E + ++++ K F+ + A A
Sbjct: 57 ELSNRRKILVKNLPQDSSCQEVHDLLQDY-ELKYCYVDRNKRTAFVTLLNGEQAQNAIQM 115
Query: 169 LDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGNS 227
+ +G+ L ++ P +A + + NL + T E E +G++ER ++ E G+S
Sbjct: 116 FHQYSFRGKDLVVQLQPTDALLCITNLPTSFTLEEFEELVRAYGNVERCFLVYSEVTGHS 175
Query: 228 KCEGIVEFARKPAAAQA 244
K G VE+ +K AA+A
Sbjct: 176 KGYGFVEYMKKDFAAKA 192
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 135 (52.6 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 38/146 (26%), Positives = 75/146 (51%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 133 DENG-SKGYAFVHFETQEAANKAIEK 157
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 135 (52.6 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 47/173 (27%), Positives = 83/173 (47%)
Query: 92 QGPTLDLPPSE---PQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI--- 145
QGP PP+ P N A+ LY+G++ D++E + E F G + +
Sbjct: 39 QGP----PPTNIGYPPNATYSMAS---LYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRD 91
Query: 146 NKEKM-FGFIRMDYKHNADKAKA--KLDGHVLKGRSLKIRFA---PI-----NAAIKVKN 194
N ++ G+ ++++ AD +A ++ V+ GR ++I ++ P N I +KN
Sbjct: 92 NTSRLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKN 151
Query: 195 LTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRR 247
L + N+ + F +FG+I V D+ GNSK G V F + +A A+ +
Sbjct: 152 LDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEK 204
Score = 128 (50.1 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 71/297 (23%), Positives = 119/297 (40%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKA 165
A N +++ N+ I + + F +G + K +GF+ + +H+A A
Sbjct: 142 AGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTA 201
Query: 166 KAKLDGHVLKGRSLKI-RFAPINAAIK-------------VKNLTSCVTNELLELAFGVF 211
K++G +L + + + +F P +K VKN + E L F F
Sbjct: 202 IEKVNGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKF 261
Query: 212 GDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTD 271
G+I A+V+ D +G K G V FA + AA QA+ + + T V
Sbjct: 262 GEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVC-------- 313
Query: 272 EIDGLSERTIN-KKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKEL 330
SER+ K+ E KQ +V R+ VN + L +H +
Sbjct: 314 RAQKKSERSAELKRKYEALKQERV-QRYQGVNLYVKNIEEDLND-DGLRDHFSSFGTITS 371
Query: 331 AQREIDRE-RQKAEWEMKERQAEELKRRDEELMKKH--AEEMQLRLAQQEEDLRRRQ 384
A+ +D R K + + EE ++ K A+ + + LAQ++ED RR Q
Sbjct: 372 AKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQRKED-RRAQ 427
>UNIPROTKB|E9PLB0 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:28842 ChiTaRS:RBM4B IPI:IPI00979194
ProteinModelPortal:E9PLB0 SMR:E9PLB0 Ensembl:ENST00000531969
ArrayExpress:E9PLB0 Bgee:E9PLB0 Uniprot:E9PLB0
Length = 143
Score = 110 (43.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 29/112 (25%), Positives = 56/112 (50%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVL 174
+L++GN+ + TE +I LF+ YG+ E I K +GF+ ++ K A+ A L + L
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--YGFVHIEDKTAAEDAIRNLHHYKL 60
Query: 175 KGRSLKIRFAP----INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD 222
G ++ + + + + V N++ TN+ L F +G + ++ D
Sbjct: 61 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
>UNIPROTKB|E9PM61 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:28842 ChiTaRS:RBM4B IPI:IPI00977800
ProteinModelPortal:E9PM61 SMR:E9PM61 Ensembl:ENST00000524637
ArrayExpress:E9PM61 Bgee:E9PM61 Uniprot:E9PM61
Length = 147
Score = 110 (43.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 29/112 (25%), Positives = 56/112 (50%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVL 174
+L++GN+ + TE +I LF+ YG+ E I K +GF+ ++ K A+ A L + L
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--YGFVHIEDKTAAEDAIRNLHHYKL 60
Query: 175 KGRSLKIRFAP----INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD 222
G ++ + + + + V N++ TN+ L F +G + ++ D
Sbjct: 61 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
>RGD|1306891 [details] [associations]
symbol:Rbm4 "RNA binding motif protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0002190 "cap-independent
translational initiation" evidence=ISO] [GO:0002192 "IRES-dependent
translational initiation" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494
"cytoplasmic stress granule" evidence=ISO] [GO:0016607 "nuclear
speck" evidence=ISO] [GO:0017148 "negative regulation of
translation" evidence=ISO] [GO:0032055 "negative regulation of
translation in response to stress" evidence=ISO] [GO:0032922
"circadian regulation of gene expression" evidence=ISO] [GO:0033554
"cellular response to stress" evidence=ISO] [GO:0035198 "miRNA
binding" evidence=ISO] [GO:0035278 "negative regulation of
translation involved in gene silencing by miRNA" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=ISO]
[GO:0045947 "negative regulation of translational initiation"
evidence=ISO] [GO:0046822 "regulation of nucleocytoplasmic
transport" evidence=ISO] [GO:0051149 "positive regulation of muscle
cell differentiation" evidence=ISO] [GO:0051403 "stress-activated
MAPK cascade" evidence=ISO] [GO:0097157 "pre-mRNA intronic binding"
evidence=ISO] [GO:0097158 "pre-mRNA intronic pyrimidine-rich
binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1306891 RGD:1359343
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
EMBL:CH473953 UniGene:Rn.203522 HOGENOM:HOG000089965 EMBL:BC086338
IPI:IPI00950131 SMR:Q5U212 STRING:Q5U212 Ensembl:ENSRNOT00000067093
InParanoid:Q5U212 Genevestigator:Q5U212 Uniprot:Q5U212
Length = 143
Score = 110 (43.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 29/112 (25%), Positives = 56/112 (50%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVL 174
+L++GN+ + TE +I LF+ YG+ E I K +GF+ ++ K A+ A L + L
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--YGFVHIEDKTAAEDAIRNLHHYKL 60
Query: 175 KGRSLKIRFAP----INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD 222
G ++ + + + + V N++ TN+ L F +G + ++ D
Sbjct: 61 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
>DICTYBASE|DDB_G0285403 [details] [associations]
symbol:DDB_G0285403 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0285403 GO:GO:0000166
EMBL:AAFI02000079 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
KO:K14407 RefSeq:XP_638262.1 ProteinModelPortal:Q54NB8
EnsemblProtists:DDB0233345 GeneID:8625070 KEGG:ddi:DDB_G0285403
InParanoid:Q54NB8 OMA:YIGSINW Uniprot:Q54NB8
Length = 1035
Score = 137 (53.3 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 33/116 (28%), Positives = 56/116 (48%)
Query: 92 QGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI------ 145
Q PT D+P + R+Y+G+I ++TE+ + +F +G F+
Sbjct: 747 QHPTPDVPKPNESAPPVPINEASRIYIGSINWNVTEDQVRSIFSQFGRVISCFLMQNADT 806
Query: 146 NKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTN 201
K K FGF+ + K +AD A A ++G L GRS+K+ P ++ N + + N
Sbjct: 807 GKHKGFGFVDFELKKSADDAIATMNGFELLGRSIKVG-RPTKSSNNNNNNNNSINN 861
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 124 (48.7 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 39/155 (25%), Positives = 79/155 (50%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE+ + F G + I ++++ G+ +++ AD KA +
Sbjct: 70 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 129
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++KG+S+++ ++ +A ++ +KNL + N+ L F FG I + V+
Sbjct: 130 NFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMS 189
Query: 222 DERGNSKCEGIVEFARKPAAAQALR----RCAEGC 252
D++G SK V F + AA +A+ + +GC
Sbjct: 190 DDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGC 223
Score = 99 (39.9 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 24/82 (29%), Positives = 44/82 (53%)
Query: 101 SEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIR 155
+E ++K +F N +Y+ N GGD+ + + ++F YG+T + + K K FGF+
Sbjct: 238 AELRSKASEFTN---VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVS 294
Query: 156 MDYKHNADKAKAKLDGHVLKGR 177
D A KA +++G + G+
Sbjct: 295 FDSHEAAKKAVEEMNGRDINGQ 316
Score = 77 (32.2 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 192 VKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+KNL + +E L F FG I R + ++ E G SK G++ F+ A +A+
Sbjct: 355 IKNLDDTIDDEKLRNEFSSFGSISR-VKVMQEEGQSKGFGLICFSSPEDATKAM 407
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 133 (51.9 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 39/146 (26%), Positives = 75/146 (51%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ DITE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 14 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 73
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I V+
Sbjct: 74 NFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 133
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK V F + AA +A+ +
Sbjct: 134 DENG-SKGYAFVHFETQDAADRAIEK 158
Score = 45 (20.9 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 341 KAEWEMKERQAEELKRRDEELMKKHAEEMQ 370
+A+ +M ERQAE LKR+ E+L ++ Q
Sbjct: 266 RAQKKM-ERQAE-LKRKFEQLKQERISRYQ 293
>UNIPROTKB|G4NKC1 [details] [associations]
symbol:MGG_03086 "U2 snRNP component IST3" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CM001237 KO:K13107 RefSeq:XP_003720587.1
ProteinModelPortal:G4NKC1 EnsemblFungi:MGG_03086T0 GeneID:2682639
KEGG:mgr:MGG_03086 Uniprot:G4NKC1
Length = 330
Score = 94 (38.1 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 25/103 (24%), Positives = 50/103 (48%)
Query: 88 IMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINK 147
I A+ ++ S + + + + +Y G + ++E DII +F YGE L + +
Sbjct: 7 IQALNKKEIEQGISPEASWHVDYRDTAFVYFGGLDDTLSEGDIITIFSQYGEPVFLKLVR 66
Query: 148 EKM------FGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184
+K FG+++ + + + D A L G V+K R +++ A
Sbjct: 67 DKETGKSRGFGWLKYEDQRSTDLAVDNLGGAVIKDRMMRVDHA 109
Score = 79 (32.9 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 36/136 (26%), Positives = 59/136 (43%)
Query: 260 RPVIVEPLELT------DEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWK 313
RP++ E EL D+ D + E I +K E + + + + + GSR
Sbjct: 151 RPLLKEERELQKLLMEHDDDDPMKEFLIEEKKKEV--EEALTREQKKSSRRKDKDGSRSS 208
Query: 314 QLHELYEHETEMLRKELAQREI--DRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQL 371
+ H + H T +E + E DR+R+K E + R E +RRD+ K +
Sbjct: 209 RHH--HHHRTSRKHREESDDEAGSDRKRRKRRDESRSR---ERRRRDDYKDKDKHRDSDS 263
Query: 372 RLAQQEEDLRRRQNDN 387
R +D RRR+ D+
Sbjct: 264 RRRDDSKDRRRRERDD 279
>ZFIN|ZDB-GENE-030131-3019 [details] [associations]
symbol:rbm4.2 "RNA binding motif protein 4.2"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-030131-3019 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 HSSP:P19339
HOGENOM:HOG000026790 HOVERGEN:HBG062217 EMBL:BC044503 EMBL:BC153457
IPI:IPI00493444 RefSeq:NP_955971.1 UniGene:Dr.123162 SMR:Q803F7
STRING:Q803F7 GeneID:557528 KEGG:dre:557528 CTD:557528
InParanoid:Q803F7 NextBio:20882029 Uniprot:Q803F7
Length = 385
Score = 131 (51.2 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 31/112 (27%), Positives = 59/112 (52%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVL 174
++++GN+ T +D+ LF +G +E + K +GF+ MD K A+ A KL + L
Sbjct: 3 KIFIGNLSPTSTADDLRSLFSEFGIVKECDVLKN--YGFVHMDSKKEAEAAIRKLHHYEL 60
Query: 175 KGRSLKIRFA---PINAA-IKVKNLTSCVTNELLELAFGVFGDIERAIVIVD 222
KG+++ + + P + + V N++S TN+ L F +G + ++ D
Sbjct: 61 KGQAINVELSKGKPRGSTKLHVSNISSGCTNQELRAKFEEYGPVVECDIVKD 112
>UNIPROTKB|Q9HCJ3 [details] [associations]
symbol:RAVER2 "Ribonucleoprotein PTB-binding 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG135032
HOGENOM:HOG000253941 HOVERGEN:HBG059515 EMBL:AB046799 EMBL:BC065303
EMBL:AL359613 IPI:IPI00397768 IPI:IPI00556565 PIR:T50631
RefSeq:NP_060681.2 UniGene:Hs.591443 PDB:1WG1 PDBsum:1WG1
ProteinModelPortal:Q9HCJ3 SMR:Q9HCJ3 PhosphoSite:Q9HCJ3
DMDM:67466983 PRIDE:Q9HCJ3 Ensembl:ENST00000294428
Ensembl:ENST00000371072 GeneID:55225 KEGG:hsa:55225 UCSC:uc001dbs.2
UCSC:uc001dbt.2 CTD:55225 GeneCards:GC01P065210 HGNC:HGNC:25577
HPA:HPA045785 MIM:609953 neXtProt:NX_Q9HCJ3 PharmGKB:PA144596391
InParanoid:Q9HCJ3 OMA:HLMNPSI EvolutionaryTrace:Q9HCJ3
GenomeRNAi:55225 NextBio:59216 ArrayExpress:Q9HCJ3 Bgee:Q9HCJ3
CleanEx:HS_RAVER2 Genevestigator:Q9HCJ3 GermOnline:ENSG00000162437
Uniprot:Q9HCJ3
Length = 691
Score = 134 (52.2 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 34/142 (23%), Positives = 69/142 (48%)
Query: 104 QNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNAD 163
Q + +N ++ + N+ D ++ +L K Y + + ++++ K F+ + A
Sbjct: 59 QRMQRELSNRRKILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQ 117
Query: 164 KAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE 223
A + +G+ L ++ P +A + + N+ T+E E +G+IER ++ E
Sbjct: 118 NAIQMFHQYSFRGKDLIVQLQPTDALLCITNVPISFTSEEFEELVRAYGNIERCFLVYSE 177
Query: 224 -RGNSKCEGIVEFARKPAAAQA 244
G+SK G VE+ +K AA+A
Sbjct: 178 VTGHSKGYGFVEYMKKDFAAKA 199
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 129 (50.5 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 39/144 (27%), Positives = 72/144 (50%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ +LKG+ ++I ++ + ++ +KNL + N+ L F FG+I V
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVAC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE G S+ G V F AA QA+
Sbjct: 133 DEHG-SRGFGFVHFETHEAAQQAI 155
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 133 (51.9 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 38/145 (26%), Positives = 70/145 (48%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI------NKEKMFGFIRMDYKHNADKAKAKL 169
LY+G++ D+TE + E F P G + + + + +I +A++A +
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KGR ++I ++ + ++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALR 246
DE G S+ G V F AA +A++
Sbjct: 133 DEHG-SRGYGFVHFETHEAANRAIQ 156
>UNIPROTKB|B8ZZ74 [details] [associations]
symbol:RBM14 "RNA-binding protein 14" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HOVERGEN:HBG002295 HGNC:HGNC:14219 ChiTaRS:RBM14 IPI:IPI00917085
ProteinModelPortal:B8ZZ74 SMR:B8ZZ74 STRING:B8ZZ74 PRIDE:B8ZZ74
Ensembl:ENST00000409372 HOGENOM:HOG000089965 ArrayExpress:B8ZZ74
Bgee:B8ZZ74 Uniprot:B8ZZ74
Length = 159
Score = 114 (45.2 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 32/99 (32%), Positives = 52/99 (52%)
Query: 115 RLYLGNI-GGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHV 173
++++GN+ G D T ++ LF PYG + K+ F F+ M A +A L GH
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQ--FAFVHMRENAGALRAIEALHGHE 59
Query: 174 LK-GRSLKIRFA---PINA-AIKVKNLTS-CVTNELLEL 206
L+ GR+L + + P+N I V N+++ C + EL L
Sbjct: 60 LRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSL 98
>WB|WBGene00004315 [details] [associations]
symbol:rbd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0018996
"molting cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0006396
"RNA processing" evidence=IMP] [GO:0040039 "inductive cell
migration" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0000478 "endonucleolytic cleavage involved in rRNA processing"
evidence=IMP] [GO:0040025 "vulval development" evidence=IMP]
[GO:0040002 "collagen and cuticulin-based cuticle development"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0040007 GO:GO:0040010
GO:GO:0005730 GO:GO:0008406 GO:GO:0000166 GO:GO:0018996
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040035 GO:GO:0040039
HSSP:P19339 GO:GO:0040002 GO:GO:0040025 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
GO:GO:0000478 EMBL:Z83127 PIR:T25186 RefSeq:NP_502432.1
ProteinModelPortal:Q9XU67 SMR:Q9XU67 DIP:DIP-26131N
MINT:MINT-1105789 STRING:Q9XU67 PaxDb:Q9XU67
EnsemblMetazoa:T23F6.4.1 EnsemblMetazoa:T23F6.4.2 GeneID:178229
KEGG:cel:CELE_T23F6.4 UCSC:T23F6.4.1 CTD:178229 WormBase:T23F6.4
InParanoid:Q9XU67 NextBio:900268 Uniprot:Q9XU67
Length = 872
Score = 103 (41.3 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 31/101 (30%), Positives = 49/101 (48%)
Query: 87 KIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQEL--F 144
+++ G +L+ E + K RL+L N+ E+D+ LFK YGE E+
Sbjct: 252 EVIEEHGASLESRDKEEETVREKILETGRLFLRNLPYATKEDDLQFLFKKYGEVSEVQVV 311
Query: 145 INKE----KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKI 181
I+K+ K F + + A A + LDG+V KGR + I
Sbjct: 312 IDKKTGACKGFAIVEFVFPEAAVAAYSALDGYVFKGRMMHI 352
Score = 75 (31.5 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 38/161 (23%), Positives = 74/161 (45%)
Query: 193 KNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAEGC 252
KNL + V +E L+ F FGD + +++ E G S +V A +A R A
Sbjct: 488 KNLPAGVESEELQRMFEKFGDCTK-VLMPTEGGVS---ALVIMGNPVDAKKAFRALAYSR 543
Query: 253 FFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRW 312
F +S +P+ +E ++ G + KT E + ++ R T E +R
Sbjct: 544 F---RS-QPLYLEWAPY--DVMGATAPPAEDKTAEVADKPKLSKREMTYEEKRKERKNRQ 597
Query: 313 KQLHELYEHETEMLRKELAQREIDRE-RQKAEWEMKERQAE 352
+ + E + + E++ +E +E++ E ++K+ + E++ E
Sbjct: 598 QGITEEEKDDGEVIEEEEKPKEVEAEDKKKSSKKQSEKEIE 638
Score = 44 (20.5 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 343 EWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEE 378
EW + EEL+ + E + + ++ AQ EE
Sbjct: 824 EWAKDDETVEELREKTAEKFAGNKKGVKKSKAQTEE 859
Score = 43 (20.2 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 342 AEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLV 392
A+ +K+ Q E L EL H E +++E ++ Q + + LV
Sbjct: 702 AKTALKDMQGELLDGHSLELKISHRENADKGALKRKEVKQKEQGECTKLLV 752
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 134 (52.2 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 38/146 (26%), Positives = 74/146 (50%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E+F G + + ++ K G+ ++Y + AD +A L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ +KG+ ++ ++ + +++ VKNL + N+ L F +FG+I V
Sbjct: 78 NYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVAT 137
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V + + +A +A+ +
Sbjct: 138 DEFGKSKSYGFVHYEDEESAKEAIEK 163
Score = 102 (41.0 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 101 SEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI---NKEKMFGFIRMD 157
SE D KF N LY+ N +TE + +LF PYGE + + NK + F FI +
Sbjct: 183 SERATNDTKFTN---LYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDNKNRKFCFI--N 237
Query: 158 YKHNADKAKAKLDGHVLKGRSL 179
Y +A+ AK +D L G+ +
Sbjct: 238 YA-DAESAKNAMDN--LNGKKI 256
Score = 72 (30.4 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 25/80 (31%), Positives = 41/80 (51%)
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERG 225
KAK D ++ ++ + +N + +KNL + + +L F FG I A V+ DE+
Sbjct: 433 KAKFDNLNVENKN---KHQGVN--LYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKE 487
Query: 226 NSKCEGIVEFARKPAAAQAL 245
SK G V FA + A +A+
Sbjct: 488 QSKGFGFVCFASQEEANKAV 507
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 134 (52.2 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 38/146 (26%), Positives = 74/146 (50%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E+F G + + ++ K G+ ++Y + AD +A L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ +KG+ ++ ++ + +++ VKNL + N+ L F +FG+I V
Sbjct: 78 NYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVAT 137
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V + + +A +A+ +
Sbjct: 138 DEFGKSKSYGFVHYEDEESAKEAIEK 163
Score = 102 (41.0 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 101 SEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI---NKEKMFGFIRMD 157
SE D KF N LY+ N +TE + +LF PYGE + + NK + F FI +
Sbjct: 183 SERATNDTKFTN---LYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDNKNRKFCFI--N 237
Query: 158 YKHNADKAKAKLDGHVLKGRSL 179
Y +A+ AK +D L G+ +
Sbjct: 238 YA-DAESAKNAMDN--LNGKKI 256
Score = 72 (30.4 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 25/80 (31%), Positives = 41/80 (51%)
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERG 225
KAK D ++ ++ + +N + +KNL + + +L F FG I A V+ DE+
Sbjct: 433 KAKFDNLNVENKN---KHQGVN--LYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKE 487
Query: 226 NSKCEGIVEFARKPAAAQAL 245
SK G V FA + A +A+
Sbjct: 488 QSKGFGFVCFASQEEANKAV 507
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 132 (51.5 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 38/146 (26%), Positives = 72/146 (49%)
Query: 116 LYLGNIGGDITENDIIELFKPYGET------QELFINKEKMFGFIRMDYKHNADKAKAKL 169
LY+G++ D+TE + E F P G ++L + + ++ + +A+ A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ VKNL + N+ L FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRR 247
DE G SK G V F AA +A+++
Sbjct: 133 DENG-SKGYGFVHFETHEAAERAIKK 157
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 134 (52.2 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 39/149 (26%), Positives = 74/149 (49%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNA--DKA 165
++ LY+G + +TE + ELF G+ + + ++ + G+ ++Y A ++A
Sbjct: 40 HSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERA 99
Query: 166 KAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERA 217
+L+ ++KG+ +I ++ + A++ +KNL S + N+ L F FG+I
Sbjct: 100 LDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSC 159
Query: 218 IVIVDERGNSKCEGIVEFARKPAAAQALR 246
V DE G SK G V + AA A++
Sbjct: 160 KVAQDEFGVSKGYGFVHYETAEAANNAIK 188
Score = 43 (20.2 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 340 QKAEWEMKERQAEELKRRDEELMKKHAEEMQLR 372
Q A EM +++ K KKH E +LR
Sbjct: 277 QAAVEEMNDKEVRSQKLYVGRAQKKHEREEELR 309
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 131 (51.2 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 38/145 (26%), Positives = 73/145 (50%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + ++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALR 246
D+ G S+ G V F AA A+R
Sbjct: 133 DDHG-SRGFGFVHFETHEAAQNAIR 156
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 131 (51.2 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 38/144 (26%), Positives = 73/144 (50%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + ++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
D+ G S+ G V F AA QA+
Sbjct: 133 DDHG-SRGFGFVHFETHEAAQQAI 155
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 131 (51.2 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 40/145 (27%), Positives = 71/145 (48%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHN---ADKAKAK 168
LY+G + +TE + ELF G + + ++ + G+ +++ HN +KA +
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNF-HNMEDGEKALDE 140
Query: 169 LDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVI 220
L+ ++KGR +I ++ + +++ +KNL + N+ L F FG I V
Sbjct: 141 LNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVA 200
Query: 221 VDERGNSKCEGIVEFARKPAAAQAL 245
VDE GN+K G V F +A A+
Sbjct: 201 VDELGNAKGYGFVHFDSVESANAAI 225
Score = 88 (36.0 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 26/86 (30%), Positives = 43/86 (50%)
Query: 102 EPQNK-DIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIR 155
E Q+K + AN +Y+ N+ +ITE + +LF +GE L + +K + FGF+
Sbjct: 248 ERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVN 307
Query: 156 MDYKHNADKAKAKLDGHVLKGRSLKI 181
A KA +L+ KG+ L +
Sbjct: 308 YANHECAQKAVDELNDKEYKGKKLYV 333
Score = 81 (33.6 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 192 VKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+KNL V +E L+ F FG I A ++ DE+G SK G V + A +A+
Sbjct: 368 IKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAV 421
>UNIPROTKB|D6R9K7 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:9901 ChiTaRS:RBM4 HOGENOM:HOG000089965 IPI:IPI00965408
ProteinModelPortal:D6R9K7 SMR:D6R9K7 Ensembl:ENST00000506523
ArrayExpress:D6R9K7 Bgee:D6R9K7 Uniprot:D6R9K7
Length = 150
Score = 109 (43.4 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 29/112 (25%), Positives = 56/112 (50%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVL 174
+L++GN+ + TE +I LF+ YG+ E I K +GF+ ++ K A+ A L + L
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--YGFVHIEDKTAAEDAIRNLHHYKL 60
Query: 175 KGRSLKIRFAP----INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD 222
G ++ + + + + V N++ TN+ L F +G + ++ D
Sbjct: 61 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD 112
>FB|FBgn0016977 [details] [associations]
symbol:spen "split ends" species:7227 "Drosophila
melanogaster" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0007379 "segment specification"
evidence=IMP] [GO:0005634 "nucleus" evidence=NAS;IDA] [GO:0007411
"axon guidance" evidence=IMP] [GO:0007400 "neuroblast fate
determination" evidence=IMP] [GO:0008347 "glial cell migration"
evidence=IMP] [GO:0007403 "glial cell fate determination"
evidence=IMP] [GO:0007173 "epidermal growth factor receptor
signaling pathway" evidence=IMP] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007422 "peripheral nervous system development" evidence=IMP]
[GO:0008586 "imaginal disc-derived wing vein morphogenesis"
evidence=IMP] [GO:0035321 "maintenance of imaginal disc-derived
wing hair orientation" evidence=IMP] [GO:0048106 "establishment of
thoracic bristle planar orientation" evidence=IMP] [GO:0035222
"wing disc pattern formation" evidence=IMP] [GO:0030177 "positive
regulation of Wnt receptor signaling pathway" evidence=IGI]
[GO:0048749 "compound eye development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0007411 GO:GO:0007173
EMBL:AE014134 GO:GO:0006355 GO:GO:0016055 GO:GO:0000166
GO:GO:0035321 GO:GO:0008586 Gene3D:3.30.70.330 GO:GO:0007422
GO:GO:0006351 GO:GO:0003723 GO:GO:0007400 eggNOG:NOG12793
GO:GO:0007379 InterPro:IPR012921 Pfam:PF07744 GO:GO:0007403
GO:GO:0048106 PROSITE:PS50917 Gene3D:2.40.290.10 InterPro:IPR016194
SUPFAM:SSF100939 CTD:23013 ChiTaRS:SPEN InterPro:IPR010912
GeneTree:ENSGT00530000063730 EMBL:AF188205 EMBL:AF184612
EMBL:AF221715 EMBL:AY094788 RefSeq:NP_524718.2 RefSeq:NP_722615.1
RefSeq:NP_722616.1 UniGene:Dm.3450 ProteinModelPortal:Q8SX83
SMR:Q8SX83 IntAct:Q8SX83 MINT:MINT-763765 STRING:Q8SX83
PaxDb:Q8SX83 EnsemblMetazoa:FBtr0078122 GeneID:44205
KEGG:dme:Dmel_CG18497 FlyBase:FBgn0016977 InParanoid:Q8SX83
OMA:DVEDNEF OrthoDB:EOG4BCC2T PhylomeDB:Q8SX83 GenomeRNAi:44205
NextBio:836951 Bgee:Q8SX83 GermOnline:CG18497 Uniprot:Q8SX83
Length = 5560
Score = 100 (40.3 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 28/109 (25%), Positives = 51/109 (46%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKH--NADKAKAKLDGHV 173
L++GN+ DIT ++ F+ +GE E+ I K+ + + Y + KA K+DG
Sbjct: 658 LFIGNLEKDITAGELRSHFEAFGEIIEIDIKKQGLNAYAFCQYSDIVSVVKAMRKMDGEH 717
Query: 174 LKGRSLKIRFA---PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIV 219
L +K+ F P N + + + V+ L+ F FG + + +
Sbjct: 718 LGSNRIKLGFGKSMPTNC-VWIDGVDEKVSESFLQSQFTRFGAVTKVSI 765
Score = 95 (38.5 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 313 KQLHELYEHETEMLRKELAQREIDRERQKAEWEMKERQA-EELKRRDEELMKKHAEEMQL 371
K+ E E + LRK++ + E DR+ Q+ E E ++R+A EE K R+ E K A+E +
Sbjct: 1925 KEKKERQEKREKDLRKQVEREEKDRKAQQEEREKEDRKAKEEEKERERE---KKAQEDRE 1981
Query: 372 RLAQQEEDLRRRQ 384
+ ++E +LR ++
Sbjct: 1982 KKEREERELREKE 1994
Score = 90 (36.7 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 16/76 (21%), Positives = 43/76 (56%)
Query: 313 KQLHELYEHETEMLRKELAQREIDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQLR 372
++L E + + E KE+ ++++ RE+++ E + +E++ + R++E+ +K E +L
Sbjct: 1988 RELREKEQRDKEQKEKEIREKDL-REKEQRERDNREKELRDKDLREKEMREKEQREKELH 2046
Query: 373 LAQQEEDLRRRQNDNS 388
+ + + R+ + S
Sbjct: 2047 REKDQREREHREKEQS 2062
Score = 89 (36.4 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 311 RWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKERQAEELKRRDEELMKK--HAEE 368
R K+ + + E E+ K+L ++E RER E E++++ E + R++E +K H E+
Sbjct: 1991 REKEQRDKEQKEKEIREKDLREKE-QRERDNREKELRDKDLREKEMREKEQREKELHREK 2049
Query: 369 MQLRLAQQEEDLRRRQND 386
Q +E++ RR D
Sbjct: 2050 DQREREHREKEQSRRAMD 2067
>ZFIN|ZDB-GENE-040426-2455 [details] [associations]
symbol:rbm14b "RNA binding motif protein 14b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-040426-2455 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 SUPFAM:SSF57756 HSSP:P19339
KO:K13189 HOVERGEN:HBG062132 EMBL:BC056604 EMBL:BC068361
IPI:IPI00492284 RefSeq:NP_997973.1 UniGene:Dr.132507 GeneID:402858
KEGG:dre:402858 CTD:402858 InParanoid:Q6NV05 NextBio:20816684
Uniprot:Q6NV05
Length = 556
Score = 129 (50.5 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 32/105 (30%), Positives = 61/105 (58%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVL 174
+L++GN+ D T+ ++ +F+ YG+ + ++ F F+ + + A++A +L+G
Sbjct: 8 KLFVGNLALDTTQEELSAIFESYGQVVSCSVLRQ--FAFVHLQGEGAAERAIRELNGREF 65
Query: 175 KGRSLKI---RFAPINAA-IKVKNLTS-CVTNELLELAFGVFGDI 214
KGR+L + R P+++ + V NL+S C T +L EL F FG +
Sbjct: 66 KGRNLVVEESRGRPLHSTKVFVGNLSSMCTTEDLQEL-FQTFGKV 109
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 129 (50.5 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 39/144 (27%), Positives = 72/144 (50%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ +LKG+ ++I ++ + ++ +KNL + N+ L F FG+I V
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVAC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE G S+ G V F AA QA+
Sbjct: 133 DEHG-SRGFGFVHFETHEAAQQAI 155
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 129 (50.5 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 38/144 (26%), Positives = 72/144 (50%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + ++ +KNL + N+ L F FG+I V+
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
DE G S+ G V F AA A+
Sbjct: 133 DEHG-SRGFGFVHFETHEAAQNAI 155
>UNIPROTKB|H0YIB4 [details] [associations]
symbol:SRSF9 "Serine/arginine-rich-splicing factor 9"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL021546 HGNC:HGNC:10791 Ensembl:ENST00000550458
Uniprot:H0YIB4
Length = 110
Score = 87 (35.7 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFI-NKEKM--FGFIRMDYKHNADKA 165
R+Y+GN+ D+ E D+ +LF YG +E+ + N+ + F F+R + +A+ A
Sbjct: 3 RIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDA 56
Score = 37 (18.1 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 231 GIVEFARKPAAAQALRR 247
G+VE+ RK ALR+
Sbjct: 93 GMVEYLRKEDMEYALRK 109
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 117 (46.2 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 41/168 (24%), Positives = 85/168 (50%)
Query: 93 GPT-LDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM- 150
GPT ++ S P + + L + + ++T+ ++ LF GE + + ++K+
Sbjct: 17 GPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKIT 76
Query: 151 -----FGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA-PINAAIK-----VKNLTSCV 199
+GF+ +A+KA L+G L+ +++K+ +A P +A+I+ V L +
Sbjct: 77 GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTM 136
Query: 200 TNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQALR 246
T + LE F +G I + ++VD+ G S+ G + F ++ A +A++
Sbjct: 137 TQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 128 (50.1 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 39/152 (25%), Positives = 78/152 (51%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKH--NADKAKAKL 169
LY+G++ D+TE + E F P G + + +++ G+ ++++ +A++A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ V+KG+ ++I ++ + +++ VKNL + ++ L F FG+I V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVC 132
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRCAEGCF 253
DE G SK G V F + A +A+ + G F
Sbjct: 133 DENG-SKGYGFVHFETQEEAERAIEKM-NGMF 162
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 124 (48.7 bits), Expect = 7.6e-05, P = 7.6e-05
Identities = 43/148 (29%), Positives = 75/148 (50%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQ--ELFINK--EKMFGFIRMDYKH-NADKAKAKLD 170
LY+GN+ D+TE I++LF G + ++ ++ + F+ Y+H +A A A ++
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEF-YEHRHAASALAAMN 67
Query: 171 GHVLKGRSLKIRFAPINAAIK----------VKNLTSCVTNELLELAFGVFGDIERAIVI 220
G + G+ +K+ +A ++ K V +L+ +T E ++ AF FG I A V+
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVV 127
Query: 221 VD-ERGNSKCEGIVEFARKPAAAQALRR 247
D G SK G V F K A A+++
Sbjct: 128 KDMATGKSKGYGFVSFFNKWDAENAIQQ 155
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 127 (49.8 bits), Expect = 7.7e-05, P = 7.7e-05
Identities = 36/144 (25%), Positives = 75/144 (52%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E+F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++KG+ ++I ++ + ++ +KNL + + N+ L F FG I + V+
Sbjct: 73 NFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVY 132
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
+E G S+ G V F AA +A+
Sbjct: 133 NEHG-SRGFGFVHFETHEAAQKAI 155
>TAIR|locus:2075676 [details] [associations]
symbol:AT3G47120 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00642 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL133292
EMBL:BT002472 EMBL:BT010369 IPI:IPI00540994 PIR:T45648
RefSeq:NP_190296.1 UniGene:At.35841 HSSP:Q9V535
ProteinModelPortal:Q9SD61 SMR:Q9SD61 IntAct:Q9SD61 PaxDb:Q9SD61
PRIDE:Q9SD61 EnsemblPlants:AT3G47120.1 GeneID:823865
KEGG:ath:AT3G47120 TAIR:At3g47120 eggNOG:COG0724
HOGENOM:HOG000174091 InParanoid:Q9SD61 KO:K13107 OMA:GHEEDRS
PhylomeDB:Q9SD61 ProtClustDB:CLSN2915690 Genevestigator:Q9SD61
Uniprot:Q9SD61
Length = 352
Score = 109 (43.4 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 27/102 (26%), Positives = 52/102 (50%)
Query: 86 EKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI 145
+ + I DL S+ + K+ N+ +Y+G I D+TE D++ +F YGE ++ +
Sbjct: 8 KNLQKINARESDLGISDEASWHAKYKNSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNL 67
Query: 146 ------NKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKI 181
K K F F+ + + + A L+G ++ GR++K+
Sbjct: 68 IRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGALVLGRTIKV 109
Score = 56 (24.8 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 20/77 (25%), Positives = 34/77 (44%)
Query: 284 KTPEFYKQRQVGPRFATVNSF-EFEYGSRWKQLHEL-YEHETEMLRKELAQREIDRERQK 341
K E + +GPR E + R+ + + E + +R++ R D E++K
Sbjct: 268 KERERVDREDMGPRSRDAYDMKEQKRSGRYDNAYSRRHNDEIDYVREDKGSRAQDWEKRK 327
Query: 342 AEWEMKERQAEELKRRD 358
AE ++R E K RD
Sbjct: 328 AE-SRRDRNDREEKDRD 343
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 121 (47.7 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 41/147 (27%), Positives = 72/147 (48%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQ--ELFINK--EKMFGFIRMDYKHNADKAKAKLDG 171
LY+GN+ D+TE I++LF G + ++ ++ + F+ +A A A ++G
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNG 64
Query: 172 HVLKGRSLKIRFAPINAAIK----------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ G+ +K+ +A ++ K V +L+ +T E ++ AF FG I A V+
Sbjct: 65 RKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVK 124
Query: 222 D-ERGNSKCEGIVEFARKPAAAQALRR 247
D G SK G V F K A A+++
Sbjct: 125 DMATGKSKGYGFVSFFNKWDAENAIQQ 151
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 131 (51.2 bits), Expect = 9.4e-05, Sum P(2) = 9.4e-05
Identities = 40/162 (24%), Positives = 78/162 (48%)
Query: 100 PSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI---NKEKM-FGFIR 155
P QN+ LY+G++ D+ E+ + E F G + + N ++ G+
Sbjct: 18 PQPGQNQTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAY 77
Query: 156 MDYKHNADKAKAK--LDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLE 205
++++ AD +A ++ L G+ ++I ++ + A++ +KNL + N+ +
Sbjct: 78 VNFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIY 137
Query: 206 LAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRR 247
F +FG+I V +DE G SK G V F + AA A+++
Sbjct: 138 DTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQK 179
Score = 39 (18.8 bits), Expect = 9.4e-05, Sum P(2) = 9.4e-05
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 350 QAEELKRRDEELMKKH----AEEMQ 370
+A++ R EL KKH AE MQ
Sbjct: 288 RAQKKSERHAELKKKHEQHKAERMQ 312
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 121 (47.7 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 41/147 (27%), Positives = 72/147 (48%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQ--ELFINK--EKMFGFIRMDYKHNADKAKAKLDG 171
LY+GN+ D+TE I++LF G + ++ ++ + F+ +A A A ++G
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNG 68
Query: 172 HVLKGRSLKIRFAPINAAIK----------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ G+ +K+ +A ++ K V +L+ +T E ++ AF FG I A V+
Sbjct: 69 RKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVK 128
Query: 222 D-ERGNSKCEGIVEFARKPAAAQALRR 247
D G SK G V F K A A+++
Sbjct: 129 DMATGKSKGYGFVSFFNKWDAENAIQQ 155
>UNIPROTKB|F1NCV3 [details] [associations]
symbol:SRSF5A "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 EMBL:AADN02003170 EMBL:AADN02003171
IPI:IPI00577087 Ensembl:ENSGALT00000038019 ArrayExpress:F1NCV3
Uniprot:F1NCV3
Length = 163
Score = 97 (39.2 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 21/73 (28%), Positives = 38/73 (52%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDG 171
+ CR+++G++ E D+ + FK YG +E+ + FGF+ + +AD A +L+G
Sbjct: 2 SGCRVFVGHLSSRARERDVEKFFKGYGRIREIHLKNG--FGFVEFEDHRDADDAIYELNG 59
Query: 172 HVLKGRSLKIRFA 184
L + I A
Sbjct: 60 KELCDERVTIEHA 72
Score = 52 (23.4 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 190 IKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFA 236
I V+NL+S ++ + L+ G++ VD N++ EG+VEFA
Sbjct: 106 IIVENLSSRISWQDLKDVMRKAGEV----TYVDAHRNNRNEGVVEFA 148
>TAIR|locus:2117706 [details] [associations]
symbol:ML3 "MEI2-like 3" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] [GO:0009507 "chloroplast" evidence=ISM] [GO:0005634
"nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0000956 "nuclear-transcribed mRNA
catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007126 GO:GO:0045927 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AL110123 GO:GO:0003723
GO:GO:0045836 InterPro:IPR007201 Pfam:PF04059 EMBL:AL161548
EMBL:AK319074 IPI:IPI00542028 IPI:IPI01019349 PIR:T14812
RefSeq:NP_001119005.4 RefSeq:NP_193546.7 UniGene:At.32943
UniGene:At.70995 ProteinModelPortal:Q9SVV9 SMR:Q9SVV9 STRING:Q9SVV9
PaxDb:Q9SVV9 PRIDE:Q9SVV9 GeneID:827537 KEGG:ath:AT4G18120
TAIR:At4g18120 eggNOG:NOG286559 InParanoid:Q9SVV9
Genevestigator:Q9SVV9 Uniprot:Q9SVV9
Length = 759
Score = 127 (49.8 bits), Expect = 0.00010, P = 0.00010
Identities = 47/147 (31%), Positives = 73/147 (49%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKH-NADKAKAK-LDGHV 173
L++ NI ++ ++++ LF+ YG + L+ K GF+ + Y A +A + L G +
Sbjct: 168 LFVRNINSNVEDSELQALFEQYGHIRTLY-TACKQRGFVMVSYNDIRASRAAMRALQGKL 226
Query: 174 LKGRSLKIRFA-----P----IN-AAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDE 223
LK R L I F+ P +N + V NL V+N LE FGV+G+I+ + E
Sbjct: 227 LKKRKLDIHFSIPKDNPSEKDVNQGTLVVFNLAPSVSNRDLENIFGVYGEIKE----IRE 282
Query: 224 RGNSKCEGIVEF--ARKP-AAAQALRR 247
N + VEF R AA +AL R
Sbjct: 283 TPNKRHHKFVEFFDVRSADAALKALNR 309
>DICTYBASE|DDB_G0294559 [details] [associations]
symbol:DDB_G0294559 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0294559 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K13107
EMBL:AAFI02000058 OMA:VFSQNRY RefSeq:XP_001134546.1
ProteinModelPortal:Q1ZXF8 EnsemblProtists:DDB0232419 GeneID:8624369
KEGG:ddi:DDB_G0294559 ProtClustDB:CLSZ2847454 Uniprot:Q1ZXF8
Length = 348
Score = 102 (41.0 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 29/101 (28%), Positives = 52/101 (51%)
Query: 87 KIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQE--LF 144
++ I L+L SE + ++++ +Y+G + D+ E D+I +F YGE E L
Sbjct: 6 EVQNINKKELNLNISESASWHADYSHSPYIYVGGLNYDLNEGDVIAIFSQYGEISECNLV 65
Query: 145 INKE----KMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKI 181
NKE + F F+ D + + A L+G L G+++K+
Sbjct: 66 RNKETGRSQGFCFVGYDQQKSTVLAVDNLNGINLLGKTIKV 106
Score = 62 (26.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 13/56 (23%), Positives = 36/56 (64%)
Query: 332 QREIDRERQKAEWEMKERQA--EELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQN 385
+++ +++++K E ++K++Q E+ KRR+ E ++ + + +++E L R+Q+
Sbjct: 156 EKKKEKKKRKLEKKLKKKQKREEKRKRRENETPEQREKRKMDKQLKKDEKLLRKQD 211
Score = 62 (26.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 17/66 (25%), Positives = 30/66 (45%)
Query: 327 RKELAQREIDRERQKAEWEMKER-QAEELKRRDEELMK-KHAEEMQLRLAQQEEDLRRRQ 384
R RE DRER + + ++R ++ E + RD + K + + R +E + R R
Sbjct: 275 RSRSRSRERDRERDRERYRDRDRNRSREREYRDRSRSRSKSRDRYRYRDRSREREYRDRS 334
Query: 385 NDNSMF 390
D +
Sbjct: 335 RDRERY 340
Score = 55 (24.4 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 20/90 (22%), Positives = 35/90 (38%)
Query: 299 ATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKERQAEELKRRD 358
++ +S + G + K +L + R R DR R ++ +ER E + RD
Sbjct: 237 SSFDSIRNDRGDQNKSNDKLENRDKHNHRNTSRDRIKDRSRSRSRERDRERDRERYRDRD 296
Query: 359 EELMKKHAEEMQLRLAQQEEDLRRRQNDNS 388
++ + R + D R R D S
Sbjct: 297 RNRSREREYRDRSRSRSKSRD-RYRYRDRS 325
Score = 54 (24.1 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 15/61 (24%), Positives = 28/61 (45%)
Query: 327 RKELAQREIDRERQKA-EWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQN 385
R+ +R DR+R ++ E E ++R K RD + + E + R ++ + R
Sbjct: 285 RERDRERYRDRDRNRSREREYRDRSRSRSKSRDRYRYRDRSREREYRDRSRDRERYRDSR 344
Query: 386 D 386
D
Sbjct: 345 D 345
Score = 53 (23.7 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 15/50 (30%), Positives = 31/50 (62%)
Query: 317 ELYEHETEMLRKELAQREIDRERQKAEW-EMKE-RQAEELKRRDEELMKK 364
E + + E K+ +RE R+R++ E E +E R+ ++ ++DE+L++K
Sbjct: 160 EKKKRKLEKKLKKKQKREEKRKRRENETPEQREKRKMDKQLKKDEKLLRK 209
>UNIPROTKB|J3QRR5 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:9901 ChiTaRS:RBM4 ProteinModelPortal:J3QRR5
Ensembl:ENST00000578778 Uniprot:J3QRR5
Length = 155
Score = 109 (43.4 bits), Expect = 0.00011, P = 0.00011
Identities = 29/112 (25%), Positives = 56/112 (50%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVL 174
+L++GN+ + TE +I LF+ YG+ E I K +GF+ ++ K A+ A L + L
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--YGFVHIEDKTAAEDAIRNLHHYKL 60
Query: 175 KGRSLKIRFAP----INAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD 222
G ++ + + + + V N++ TN+ L F +G + ++ D
Sbjct: 61 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD 112
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 126 (49.4 bits), Expect = 0.00011, P = 0.00011
Identities = 36/148 (24%), Positives = 70/148 (47%)
Query: 114 CRLYLGNIGGDITENDIIELFKPYGETQELFI------NKEKMFGFIRMDYKHNADKAKA 167
C LY+G++ ++T++ + + F + + + N +G++ +A+KA
Sbjct: 46 CSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQ 105
Query: 168 KLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIV 219
KL+ L G+ ++I ++ +++ + VKNL V N+ L AF G I V
Sbjct: 106 KLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKV 165
Query: 220 IVDERGNSKCEGIVEFARKPAAAQALRR 247
D G S+ G V+F + +A A+ +
Sbjct: 166 ATDHMGQSRGYGFVQFDTEDSAKNAIEK 193
Score = 125 (49.1 bits), Expect = 0.00014, P = 0.00014
Identities = 35/113 (30%), Positives = 59/113 (52%)
Query: 145 INKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKI-----RFAPINAAIK-------V 192
+ + + +GF++ D + +A A KL+G VL + + + + +AA K V
Sbjct: 170 MGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYV 229
Query: 193 KNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
KNL+ T++ L+ FG +G I A+V+ D G S+C G V F AA+A+
Sbjct: 230 KNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAV 282
>UNIPROTKB|B1ANR1 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000217922 EMBL:AL845289 UniGene:Hs.169900 HGNC:HGNC:8557
ChiTaRS:PABPC4 IPI:IPI00644016 SMR:B1ANR1 STRING:B1ANR1
Ensembl:ENST00000451091 Uniprot:B1ANR1
Length = 129
Score = 101 (40.6 bits), Expect = 0.00012, P = 0.00012
Identities = 27/113 (23%), Positives = 59/113 (52%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDI 214
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNI 125
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 122 (48.0 bits), Expect = 0.00013, P = 0.00013
Identities = 44/146 (30%), Positives = 71/146 (48%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKH-NADKAKAKLD 170
LY+GN+ D+TE I++LF G + + E + F+ Y+H +A A A ++
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEF-YEHRDAAAALAAMN 69
Query: 171 GHVLKGRSLKIRFAPINAAIK----------VKNLTSCVTNELLELAFGVFGDIERAIVI 220
G + G+ +K+ +A ++ K V +L+ +T E ++ AF FG I A V+
Sbjct: 70 GRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVV 129
Query: 221 VD-ERGNSKCEGIVEFARKPAAAQAL 245
D G SK G V F K A A+
Sbjct: 130 KDMATGKSKGYGFVSFYNKLDAENAI 155
Score = 98 (39.6 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 26/91 (28%), Positives = 47/91 (51%)
Query: 100 PSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGE------TQELFINKEKMFGF 153
PS Q KD +N+ +++G++ +IT DI F P+G+ +++ K K +GF
Sbjct: 86 PSS-QKKDT--SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 142
Query: 154 IRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184
+ K +A+ A + G L GR ++ +A
Sbjct: 143 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 173
Score = 59 (25.8 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 184 APINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQ 243
+P N + + S +T++L+ F FG I I + E+G S V F+ +AA
Sbjct: 201 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIME-IRVFPEKGYS----FVRFSTHESAAH 255
Query: 244 AL 245
A+
Sbjct: 256 AI 257
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 122 (48.0 bits), Expect = 0.00013, P = 0.00013
Identities = 44/146 (30%), Positives = 71/146 (48%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKH-NADKAKAKLD 170
LY+GN+ D+TE I++LF G + + E + F+ Y+H +A A A ++
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEF-YEHRDAAAALAAMN 69
Query: 171 GHVLKGRSLKIRFAPINAAIK----------VKNLTSCVTNELLELAFGVFGDIERAIVI 220
G + G+ +K+ +A ++ K V +L+ +T E ++ AF FG I A V+
Sbjct: 70 GRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVV 129
Query: 221 VD-ERGNSKCEGIVEFARKPAAAQAL 245
D G SK G V F K A A+
Sbjct: 130 KDMATGKSKGYGFVSFYNKLDAENAI 155
Score = 98 (39.6 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 26/91 (28%), Positives = 47/91 (51%)
Query: 100 PSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGE------TQELFINKEKMFGF 153
PS Q KD +N+ +++G++ +IT DI F P+G+ +++ K K +GF
Sbjct: 86 PSS-QKKDT--SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 142
Query: 154 IRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184
+ K +A+ A + G L GR ++ +A
Sbjct: 143 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 173
Score = 59 (25.8 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 184 APINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQ 243
+P N + + S +T++L+ F FG I I + E+G S V F+ +AA
Sbjct: 201 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIME-IRVFPEKGYS----FVRFSTHESAAH 255
Query: 244 AL 245
A+
Sbjct: 256 AI 257
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 127 (49.8 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 41/182 (22%), Positives = 85/182 (46%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGET------QELFINKEKMFGFIRMDYKHNADKAK 166
N LY+G++ ++T++ + + F G ++L + +G++ +A +A
Sbjct: 35 NTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAI 94
Query: 167 AKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAI 218
+L+ L G+ +++ ++ + +++ +KNL + ++ L F FG+I
Sbjct: 95 QELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCK 154
Query: 219 VIVDERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSE 278
V VD G SK G V++A + +A +A+ + G L + V V P E D +
Sbjct: 155 VAVDSSGQSKGYGFVQYANEESAQKAIEKL-NG-MLLND--KQVYVGPFLRRQERDSTAN 210
Query: 279 RT 280
+T
Sbjct: 211 KT 212
Score = 85 (35.0 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 192 VKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
VKNL +++E L+ F FG + + V+ D G SK G V FA A +A+
Sbjct: 322 VKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAM 375
Score = 82 (33.9 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 23/85 (27%), Positives = 38/85 (44%)
Query: 93 GPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE---- 148
GP L + KF N +Y+ N+ T++D+ F YG+ + K+
Sbjct: 197 GPFLRRQERDSTANKTKFTN---VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGK 253
Query: 149 -KMFGFIRMDYKHNADKAKAKLDGH 172
K FGF+ + +A +A L+GH
Sbjct: 254 SKGFGFVNFENADDAARAVESLNGH 278
Score = 41 (19.5 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 336 DRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQ 370
D+E + K + EL+ R E+ +K+ A++ Q
Sbjct: 282 DKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQ 316
>UNIPROTKB|Q5ZLF9 [details] [associations]
symbol:SRSF5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 OrthoDB:EOG4RJG2V EMBL:AADN02003156
EMBL:AJ719775 IPI:IPI00651527 UniGene:Gga.4502 STRING:Q5ZLF9
Ensembl:ENSGALT00000032618 Uniprot:Q5ZLF9
Length = 123
Score = 100 (40.3 bits), Expect = 0.00015, P = 0.00015
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDG 171
+ CR+++G + E D+ FK YG ++ I+ ++ FGF+ + +AD A +LDG
Sbjct: 2 SGCRVFIGRLNPAAREKDVERFFKGYGRIRD--IDLKRGFGFVEFEDPRDADDAVYELDG 59
Query: 172 HVLKGRSLKIRFA 184
L + I A
Sbjct: 60 KELCSERVTIEHA 72
>UNIPROTKB|B4DJK0 [details] [associations]
symbol:SRSF5 "Serine/arginine-rich-splicing factor 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AL157789
UniGene:Hs.632326 HGNC:HGNC:10787 ChiTaRS:SRSF5 EMBL:AL355837
EMBL:AK296113 IPI:IPI01025047 ProteinModelPortal:B4DJK0 SMR:B4DJK0
STRING:B4DJK0 Ensembl:ENST00000555349 ArrayExpress:B4DJK0
Bgee:B4DJK0 Uniprot:B4DJK0
Length = 124
Score = 100 (40.3 bits), Expect = 0.00015, P = 0.00015
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDG 171
+ CR+++G + E D+ FK YG ++ I+ ++ FGF+ + +AD A +LDG
Sbjct: 2 SGCRVFIGRLNPAAREKDVERFFKGYGRIRD--IDLKRGFGFVEFEDPRDADDAVYELDG 59
Query: 172 HVLKGRSLKIRFA 184
L + I A
Sbjct: 60 KELCSERVTIEHA 72
>UNIPROTKB|G3V5K8 [details] [associations]
symbol:SRSF5 "Serine/arginine-rich-splicing factor 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0051726 "regulation
of cell cycle" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0009611
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0051726 EMBL:AL157789 HGNC:HGNC:10787 ChiTaRS:SRSF5
EMBL:AL355837 ProteinModelPortal:G3V5K8 SMR:G3V5K8
Ensembl:ENST00000553548 ArrayExpress:G3V5K8 Bgee:G3V5K8
Uniprot:G3V5K8
Length = 99
Score = 100 (40.3 bits), Expect = 0.00015, P = 0.00015
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDG 171
+ CR+++G + E D+ FK YG ++ I+ ++ FGF+ + +AD A +LDG
Sbjct: 2 SGCRVFIGRLNPAAREKDVERFFKGYGRIRD--IDLKRGFGFVEFEDPRDADDAVYELDG 59
Query: 172 HVLKGRSLKIRFA 184
L + I A
Sbjct: 60 KELCSERVTIEHA 72
>DICTYBASE|DDB_G0292472 [details] [associations]
symbol:DDB_G0292472 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0292472 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000190 eggNOG:NOG321849 RefSeq:XP_629639.1
ProteinModelPortal:Q54D57 EnsemblProtists:DDB0184418 GeneID:8628703
KEGG:ddi:DDB_G0292472 InParanoid:Q54D57 OMA:ANINFAF Uniprot:Q54D57
Length = 550
Score = 118 (46.6 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 30/107 (28%), Positives = 55/107 (51%)
Query: 146 NKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAA------IKVKNLTSCV 199
N +GF++ K A A +L+G + + LK+ +A +++ + + L V
Sbjct: 149 NSSLGYGFVKFSKKDEAAMAIEQLNGFEVDSKPLKVSYAQASSSQSTHANLYINRLEPHV 208
Query: 200 TNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQAL 245
TN L+ FG FGD+ ++ D + G S+C G V F+++ A +A+
Sbjct: 209 TNANLKEVFGSFGDVIDTKILTDPDTGASRCVGFVHFSQRREALKAV 255
Score = 49 (22.3 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 104 QNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQ--ELFINKEK 149
Q+ D+ N L + NI + N++ LF +GE + ++ N++K
Sbjct: 74 QDPDLDALTN--LIVNNIPKSMDSNELKSLFDKFGEIESCKIVFNRKK 119
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 121 (47.7 bits), Expect = 0.00017, P = 0.00017
Identities = 41/147 (27%), Positives = 72/147 (48%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQ--ELFINK--EKMFGFIRMDYKHNADKAKAKLDG 171
LY+GN+ D+TE I++LF G + ++ ++ + F+ +A A A ++G
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNG 68
Query: 172 HVLKGRSLKIRFAPINAAIK----------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ G+ +K+ +A ++ K V +L+ +T E ++ AF FG I A V+
Sbjct: 69 RKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVK 128
Query: 222 D-ERGNSKCEGIVEFARKPAAAQALRR 247
D G SK G V F K A A+++
Sbjct: 129 DMATGKSKGYGFVSFFNKWDAENAIQQ 155
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 121 (47.7 bits), Expect = 0.00018, P = 0.00018
Identities = 37/136 (27%), Positives = 73/136 (53%)
Query: 124 DITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKLDGHVLKGR 177
++T+ ++ LF GE + + ++K+ +GF+ +A+KA L+G L+ +
Sbjct: 78 NMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINTLNGLRLQTK 137
Query: 178 SLKIRFA-PINAAIK-----VKNLTSCVTNELLELAFGVFGDIERAIVIVDE-RGNSKCE 230
++K+ +A P +A+I+ V L +T + LE F FG I + ++VD+ G S+
Sbjct: 138 TIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGV 197
Query: 231 GIVEFARKPAAAQALR 246
G + F R+ A +A++
Sbjct: 198 GFIRFDRRVEAEEAIK 213
>DICTYBASE|DDB_G0279639 [details] [associations]
symbol:DDB_G0279639 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003034 InterPro:IPR012677
Pfam:PF00076 Pfam:PF02037 PROSITE:PS50102 PROSITE:PS50800
SMART:SM00360 SMART:SM00513 dictyBase:DDB_G0279639 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 Gene3D:1.10.720.30
EMBL:AAFI02000032 eggNOG:NOG135032 RefSeq:XP_641568.1
ProteinModelPortal:Q54WI5 EnsemblProtists:DDB0220678 GeneID:8622143
KEGG:ddi:DDB_G0279639 InParanoid:Q54WI5 OMA:ENTNTNE Uniprot:Q54WI5
Length = 1009
Score = 93 (37.8 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 37/159 (23%), Positives = 70/159 (44%)
Query: 107 DIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFG----FIRMDY--KH 160
DI A++ L++GN+G D+ + + ++F+ +G + + K + G + +DY K
Sbjct: 394 DIPLADSL-LFVGNLGNDVGKEQLKKMFEKHGTIDRIILIKNRRTGENKGYAFIDYRTKL 452
Query: 161 NADKAKAKLDGHVLKGRSLKIRFAP-INAAIKVKNLTSCVTN--------ELLELAFGVF 211
A AK+ L V R+L++ +A N + + T V +L F F
Sbjct: 453 QASTAKSSLGSIVFNRRTLRVDWAENCNTMESMHSKTIFVDRLPRSFADVPILRKVFSPF 512
Query: 212 GDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCAE 250
G I+ V+ + G + +++ A +A R E
Sbjct: 513 GKIKDCNVVPNYYGQPRGFAFIDYNNVEDAEKAQRMMNE 551
Score = 81 (33.6 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 15/63 (23%), Positives = 41/63 (65%)
Query: 324 EMLRKELAQRE--IDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLR 381
+ +++E QRE + +++Q+ + + +++Q +E +R+ +E ++K + QL+ QQ++
Sbjct: 796 QQVQREKQQREALLRQQQQQQQQQQQQQQQQERQRKQQEALQKQQQIQQLQQQQQQQQQA 855
Query: 382 RRQ 384
++Q
Sbjct: 856 QQQ 858
Score = 76 (31.8 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 18/76 (23%), Positives = 47/76 (61%)
Query: 311 RWKQLHE--LYEHETEMLRKELAQREIDRERQKAEWEMKERQAEELKRRDEELMKKHAEE 368
R KQ E L + + + +++ Q++ +R+R++ E K++Q ++L+++ ++ ++ A++
Sbjct: 800 REKQQREALLRQQQQQQQQQQQQQQQQERQRKQQEALQKQQQIQQLQQQQQQ--QQQAQQ 857
Query: 369 MQLRLAQQEEDLRRRQ 384
Q + AQQ+ + +Q
Sbjct: 858 QQQQQAQQQAQQQSQQ 873
>TAIR|locus:2058203 [details] [associations]
symbol:FPA species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0009911 "positive regulation of flower
development" evidence=IMP] [GO:0010228 "vegetative to reproductive
phase transition of meristem" evidence=IMP] [GO:0000785 "chromatin"
evidence=IDA] [GO:0009553 "embryo sac development" evidence=IGI]
[GO:0009790 "embryo development" evidence=IGI] [GO:0031048
"chromatin silencing by small RNA" evidence=IMP] [GO:0006378 "mRNA
polyadenylation" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0030154 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0000785
GO:GO:0006351 GO:GO:0003723 GO:GO:0009790 GO:GO:0009911
GO:GO:0031048 GO:GO:0010228 GO:GO:0009908 GO:GO:0009553
EMBL:AC002335 InterPro:IPR012921 Pfam:PF07744 HSSP:Q9V535
EMBL:AY849993 EMBL:AY094463 EMBL:BT003029 EMBL:AK317032
EMBL:AK318833 IPI:IPI00545884 IPI:IPI00852356 IPI:IPI00955350
RefSeq:NP_001078046.1 RefSeq:NP_001078047.1 RefSeq:NP_001078048.1
RefSeq:NP_181869.2 UniGene:At.12188 UniGene:At.36898
ProteinModelPortal:Q8LPQ9 SMR:Q8LPQ9 IntAct:Q8LPQ9 STRING:Q8LPQ9
PaxDb:Q8LPQ9 PRIDE:Q8LPQ9 EnsemblPlants:AT2G43410.2
EnsemblPlants:AT2G43410.3 EnsemblPlants:AT2G43410.4 GeneID:818942
KEGG:ath:AT2G43410 TAIR:At2g43410 eggNOG:NOG250829
HOGENOM:HOG000015139 InParanoid:A8MQX1 OMA:TSAYIDF PhylomeDB:Q8LPQ9
ProtClustDB:CLSN2697851 Genevestigator:Q8LPQ9 PROSITE:PS50917
Uniprot:Q8LPQ9
Length = 901
Score = 126 (49.4 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 36/112 (32%), Positives = 56/112 (50%)
Query: 107 DIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAK 166
D F +N L++G++ + TE+D+ ELF YG+ + + + F FI + A AK
Sbjct: 12 DSGFQSN-NLWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFAFIYYRHVEEAVAAK 70
Query: 167 AKLDGHVLKGRSLKIRFA-PINA--AIKVKNLTSCVTNELLELAFGVFGDIE 215
L G L G +KI +A P ++ V + V+ + LE F FG IE
Sbjct: 71 EALQGANLNGSQIKIEYARPAKPCKSLWVGGIGPNVSKDDLEEEFSKFGKIE 122
Score = 45 (20.9 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 349 RQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMF 390
R AEE ++ E L + ++++ ++L Q+D S +
Sbjct: 252 RSAEEARQCKEGLQGRLFNNPRIKIMYSNDELPPEQDDTSFY 293
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 99 (39.9 bits), Expect = 0.00019, P = 0.00019
Identities = 24/79 (30%), Positives = 45/79 (56%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQE--LFINKE----KMFGFIRMDYKHNADKAKAK 168
++Y+G++ D+T +++ F YGE +E L +++E K F FI + A +A +K
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
Query: 169 LDGHVLKGRSLKIRFAPIN 187
+G L+GR +++ A N
Sbjct: 79 ANGIDLQGRKIRVNIAREN 97
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 99 (39.9 bits), Expect = 0.00019, P = 0.00019
Identities = 24/79 (30%), Positives = 45/79 (56%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQE--LFINKE----KMFGFIRMDYKHNADKAKAK 168
++Y+G++ D+T +++ F YGE +E L +++E K F FI + A +A +K
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
Query: 169 LDGHVLKGRSLKIRFAPIN 187
+G L+GR +++ A N
Sbjct: 79 ANGIDLQGRKIRVNIAREN 97
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 98 (39.6 bits), Expect = 0.00025, P = 0.00025
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQE--LFINKE----KMFGFIRMDYKHNADKAK 166
+ +L++ + T+ + +LF P+G+ +E L + E K FGFI D + +A KA
Sbjct: 6 SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65
Query: 167 AKLDGHVLKGRSLKIRFA 184
LDG ++ GR + + A
Sbjct: 66 KSLDGKIVDGRLIFVEVA 83
>ZFIN|ZDB-GENE-030318-3 [details] [associations]
symbol:myo6b "myosin VIb" species:7955 "Danio rerio"
[GO:0003774 "motor activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016459 "myosin complex" evidence=IEA]
[GO:0050974 "detection of mechanical stimulus involved in sensory
perception" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0042491 "auditory receptor cell differentiation"
evidence=IMP] InterPro:IPR000048 InterPro:IPR001609 Pfam:PF00063
PRINTS:PR00193 PROSITE:PS50096 SMART:SM00015 SMART:SM00242
ZFIN:ZDB-GENE-030318-3 GO:GO:0005524 GO:GO:0003774 GO:GO:0050974
eggNOG:COG5022 GO:GO:0016459 GO:GO:0042491 HOGENOM:HOG000007806
HOVERGEN:HBG003523 KO:K10358 OrthoDB:EOG46HG8W EMBL:AY618701
IPI:IPI00488572 RefSeq:NP_001004110.1 UniGene:Dr.89236
ProteinModelPortal:Q68RJ3 PRIDE:Q68RJ3 GeneID:445472
KEGG:dre:445472 CTD:445472 NextBio:20832141 Bgee:Q68RJ3
Uniprot:Q68RJ3
Length = 1267
Score = 126 (49.4 bits), Expect = 0.00025, P = 0.00025
Identities = 49/162 (30%), Positives = 75/162 (46%)
Query: 223 ERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTIN 282
ER N G+ E K ++ + A L ++ ++ E+ E +GL +R+
Sbjct: 853 ERFNEAVNGLKE--GKAEMSKQIEELAASTDALMAKIKTTVMSRKEIEQEYEGLVKRS-E 909
Query: 283 KKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKA 342
+ K++Q + + + K+ HE E E LRK Q E DR R K+
Sbjct: 910 QLLSSMQKKKQEQEETERLKHIQEZMEKERKR-HE----EEEQLRK---QEEEDR-RMKS 960
Query: 343 EWEMKERQAEE-LKRRDEELMKKHAE-EMQLRLAQQEEDLRR 382
E E K +Q EE K+R+EE AE EMQL L ++EE R+
Sbjct: 961 EMEQKRKQEEEERKKREEEERVLQAELEMQLALDREEETQRQ 1002
>UNIPROTKB|F1RKX4 [details] [associations]
symbol:RBFOX1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008022 "protein C-terminus binding" evidence=IEA]
[GO:0005802 "trans-Golgi network" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005802 GeneTree:ENSGT00390000013767
EMBL:CU464000 EMBL:CU694874 Ensembl:ENSSSCT00000008677 OMA:PPENTEN
Uniprot:F1RKX4
Length = 234
Score = 115 (45.5 bits), Expect = 0.00028, P = 0.00028
Identities = 33/125 (26%), Positives = 61/125 (48%)
Query: 94 PTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQ--ELFINKE--K 149
PT P ++P + RL++ NI + D+ ++F +G+ E+ N+ K
Sbjct: 101 PTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 160
Query: 150 MFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIKVKNLTSCVTN--ELLELA 207
FGF+ + +AD+A+ KL G V++GR +++ A K + TN +L+ +
Sbjct: 161 GFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNP-YTNGWKLIPVV 219
Query: 208 FGVFG 212
V+G
Sbjct: 220 GAVYG 224
>UNIPROTKB|B4DUA4 [details] [associations]
symbol:SRSF5 "cDNA FLJ57437, highly similar to Splicing
factor, arginine/serine-rich 5" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
EMBL:AL157789 UniGene:Hs.632326 HGNC:HGNC:10787 ChiTaRS:SRSF5
EMBL:AL355837 EMBL:AK300560 IPI:IPI01009006
ProteinModelPortal:B4DUA4 SMR:B4DUA4 STRING:B4DUA4
Ensembl:ENST00000451983 Ensembl:ENST00000553369
Ensembl:ENST00000554021 UCSC:uc021rvj.1 ArrayExpress:B4DUA4
Bgee:B4DUA4 Uniprot:B4DUA4
Length = 138
Score = 100 (40.3 bits), Expect = 0.00030, P = 0.00030
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDG 171
+ CR+++G + E D+ FK YG ++ I+ ++ FGF+ + +AD A +LDG
Sbjct: 2 SGCRVFIGRLNPAAREKDVERFFKGYGRIRD--IDLKRGFGFVEFEDPRDADDAVYELDG 59
Query: 172 HVLKGRSLKIRFA 184
L + I A
Sbjct: 60 KELCSERVTIEHA 72
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 122 (48.0 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 33/144 (22%), Positives = 69/144 (47%)
Query: 116 LYLGNIGGDITENDIIELFKPYGET------QELFINKEKMFGFIRMDYKHNADKAKAKL 169
LY+G++ +T++ + E F G+ +++ + +G++ +A +A +L
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ L GR++++ ++ + +++ +KNL + ++ L F FG I V V
Sbjct: 107 NFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAV 166
Query: 222 DERGNSKCEGIVEFARKPAAAQAL 245
D G SK G V++ AA A+
Sbjct: 167 DPSGQSKGYGFVQYDTDEAAQGAI 190
Score = 44 (20.5 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 336 DRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQ 370
D+E + + K + ELK++ E+ +K+ A++ Q
Sbjct: 291 DKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQ 325
>UNIPROTKB|E5RJB9 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI01013146
ProteinModelPortal:E5RJB9 SMR:E5RJB9 Ensembl:ENST00000521865
ArrayExpress:E5RJB9 Bgee:E5RJB9 Uniprot:E5RJB9
Length = 129
Score = 97 (39.2 bits), Expect = 0.00032, P = 0.00032
Identities = 27/113 (23%), Positives = 59/113 (52%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKA--KL 169
LY+G++ D+TE + E F P G + + ++ + G+ ++++ AD +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDI 214
+ V+KG+ ++I ++ + +++ +KNL + N+ L F FG+I
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 125
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 120 (47.3 bits), Expect = 0.00032, P = 0.00032
Identities = 25/64 (39%), Positives = 39/64 (60%)
Query: 117 YLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKG 176
Y+GN+ T+NDI+ LF+ +G E + ++ F FI+MD NA A +L+G+ + G
Sbjct: 311 YVGNLTPYTTQNDIVPLFQNFGYVIETRMQADRGFAFIKMDTHENAASAICQLNGYNVNG 370
Query: 177 RSLK 180
R LK
Sbjct: 371 RPLK 374
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 107 (42.7 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 31/109 (28%), Positives = 56/109 (51%)
Query: 89 MAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGE--TQELFIN 146
+ +Q T+ + + P ++ IK AN LY+ + ++T++D+ LF PYG+ T + +
Sbjct: 174 LRLQNKTIKVSIARPSSESIKGAN---LYVSGLPKNMTQSDLESLFSPYGKIITSRILCD 230
Query: 147 K---------EKMFGFIRMDYKHNADKAKAKLDGHVLKGRS--LKIRFA 184
K GFIR D + AD+A +L+G K + + ++FA
Sbjct: 231 NITGEHAAGLSKGVGFIRFDQRFEADRAIKELNGTTPKNSTEPITVKFA 279
Score = 55 (24.4 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 190 IKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEG 231
I V NL +L FG FG ++ VI D + N KC+G
Sbjct: 363 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSN-KCKG 403
>TAIR|locus:2173338 [details] [associations]
symbol:SC35 "ortholog of human splicing factor SC35"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA;TAS] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0016020
"membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0016020
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AB008268 HSSP:P19339 GO:GO:0000398 eggNOG:COG0724
HOGENOM:HOG000276233 KO:K12891 OMA:DHRRRTR EMBL:AY063890
EMBL:AY122917 EMBL:AY127004 EMBL:AY143851 IPI:IPI00549029
RefSeq:NP_201225.1 RefSeq:NP_851261.1 UniGene:At.23698
UniGene:At.49215 ProteinModelPortal:Q9FMG4 SMR:Q9FMG4 STRING:Q9FMG4
PaxDb:Q9FMG4 PRIDE:Q9FMG4 EnsemblPlants:AT5G64200.1
EnsemblPlants:AT5G64200.2 GeneID:836541 KEGG:ath:AT5G64200
TAIR:At5g64200 InParanoid:Q9FMG4 ProtClustDB:CLSN2914827
ArrayExpress:Q9FMG4 Genevestigator:Q9FMG4 Uniprot:Q9FMG4
Length = 303
Score = 116 (45.9 bits), Expect = 0.00040, P = 0.00040
Identities = 26/71 (36%), Positives = 40/71 (56%)
Query: 120 NIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKLDGHV 173
NI T +D+ LF YG+ ++FI +++ F F+R YK A KA +LDG V
Sbjct: 22 NITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRV 81
Query: 174 LKGRSLKIRFA 184
+ GR + ++FA
Sbjct: 82 VDGREITVQFA 92
>SGD|S000001128 [details] [associations]
symbol:NAM8 "RNA binding protein, component of the U1 snRNP
protein" species:4932 "Saccharomyces cerevisiae" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;IPI] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IPI] [GO:0005685 "U1
snRNP" evidence=IDA] [GO:0003729 "mRNA binding" evidence=IPI]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000243 "commitment complex"
evidence=IPI] [GO:0006376 "mRNA splice site selection"
evidence=IMP] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000001128 GO:GO:0005739 GO:GO:0000166 EMBL:BK006934
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000243 eggNOG:COG0724
GO:GO:0048026 GO:GO:0006376 GO:GO:0071004 OrthoDB:EOG44BFB8
EMBL:U00060 GO:GO:0005685 EMBL:X64763 EMBL:D11461 PIR:S46720
RefSeq:NP_011954.1 ProteinModelPortal:Q00539 SMR:Q00539
DIP:DIP-2749N IntAct:Q00539 MINT:MINT-612683 STRING:Q00539
PaxDb:Q00539 PeptideAtlas:Q00539 EnsemblFungi:YHR086W GeneID:856486
KEGG:sce:YHR086W CYGD:YHR086w GeneTree:ENSGT00510000047100
HOGENOM:HOG000066109 OMA:MNTGMNT NextBio:982182
Genevestigator:Q00539 GermOnline:YHR086W Uniprot:Q00539
Length = 523
Score = 107 (42.7 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 26/105 (24%), Positives = 48/105 (45%)
Query: 84 FTEKIMAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELF-KPYGETQE 142
F K + + T S ++K NNC +++G++ ++TE+ + ELF Y T
Sbjct: 133 FPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNVTESQLFELFINRYASTSH 192
Query: 143 LFI------NKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKI 181
I K +GF++ A +++ G L GR++K+
Sbjct: 193 AKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKV 237
Score = 56 (24.8 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQA 244
P N + + L+S VT + L F FG I + V KC G V++ + +A A
Sbjct: 310 PNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPV-----GKCCGFVQYVDRLSAEAA 364
Query: 245 L 245
+
Sbjct: 365 I 365
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 118 (46.6 bits), Expect = 0.00042, P = 0.00042
Identities = 42/148 (28%), Positives = 70/148 (47%)
Query: 116 LYLGNIGGDITENDIIELFKPYG---ETQELFINKEKMFGFIRMDYKHNADKAKAKLDGH 172
LY+GN+ +TE+ I LF G +T+ +F + F+ A +A ++
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDPYAFVEFSDHGQASQALQTMNKR 107
Query: 173 VLKGRSLKIRFA--P------INAA----IKVKNLTSCVTNELLELAFGVFGDIERAIVI 220
+L R +K+ +A P I+ + V +L+S V N+ L AF FGD+ A VI
Sbjct: 108 LLLDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVI 167
Query: 221 VDERGN-SKCEGIVEFARKPAAAQALRR 247
D SK G V + ++ A +A+ +
Sbjct: 168 RDTNTTKSKGYGFVSYPKREEAERAIEQ 195
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 117 (46.2 bits), Expect = 0.00043, P = 0.00043
Identities = 41/168 (24%), Positives = 85/168 (50%)
Query: 93 GPT-LDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM- 150
GPT ++ S P + + L + + ++T+ ++ LF GE + + ++K+
Sbjct: 17 GPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKIT 76
Query: 151 -----FGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA-PINAAIK-----VKNLTSCV 199
+GF+ +A+KA L+G L+ +++K+ +A P +A+I+ V L +
Sbjct: 77 GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTM 136
Query: 200 TNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQALR 246
T + LE F +G I + ++VD+ G S+ G + F ++ A +A++
Sbjct: 137 TQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
>ZFIN|ZDB-GENE-030131-185 [details] [associations]
symbol:hnrnpab "heterogeneous nuclear
ribonucleoprotein A/B" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-185
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU658205 IPI:IPI01023938 Ensembl:ENSDART00000148447
ArrayExpress:F8W4E3 Uniprot:F8W4E3
Length = 366
Score = 117 (46.2 bits), Expect = 0.00045, P = 0.00045
Identities = 50/195 (25%), Positives = 83/195 (42%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFIN------KEKMFGFIRMDYKHNADKAKAK 168
++++G + D ++ D+ + F +GE + I + + FGFI DK A+
Sbjct: 96 KMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSGVDKVLAQ 155
Query: 169 LDGHVLKGRSL--KIRFAPINAAIK---VKNLTSCVTNELLELAFGVFGDIERAIVIVDE 223
+ H L GR + K A +K V L T E + FG FG+IE + +D
Sbjct: 156 KE-HRLDGRQIDPKKAMAMKKEPVKKIFVGGLNPETTEERIREYFGAFGEIETIELPMDP 214
Query: 224 RGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINK 283
+ N + G V K +A+++ E + + T +GL E I
Sbjct: 215 KSNKR-RGFVFITFKEE--EAVKKILEKKYHNVSGTKD--------TSGKEGLCEIKI-A 262
Query: 284 KTPEFYKQRQVGPRF 298
+ E Y+Q+Q G RF
Sbjct: 263 QPKEVYQQQQYGGRF 277
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 117 (46.2 bits), Expect = 0.00049, P = 0.00049
Identities = 41/168 (24%), Positives = 85/168 (50%)
Query: 93 GPT-LDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM- 150
GPT ++ S P + + L + + ++T+ ++ LF GE + + ++K+
Sbjct: 45 GPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKIT 104
Query: 151 -----FGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA-PINAAIK-----VKNLTSCV 199
+GF+ +A+KA L+G L+ +++K+ +A P +A+I+ V L +
Sbjct: 105 GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTM 164
Query: 200 TNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQALR 246
T + LE F +G I + ++VD+ G S+ G + F ++ A +A++
Sbjct: 165 TQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 212
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 117 (46.2 bits), Expect = 0.00050, P = 0.00050
Identities = 41/168 (24%), Positives = 85/168 (50%)
Query: 93 GPT-LDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM- 150
GPT ++ S P + + L + + ++T+ ++ LF GE + + ++K+
Sbjct: 46 GPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKIT 105
Query: 151 -----FGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA-PINAAIK-----VKNLTSCV 199
+GF+ +A+KA L+G L+ +++K+ +A P +A+I+ V L +
Sbjct: 106 GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTM 165
Query: 200 TNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQALR 246
T + LE F +G I + ++VD+ G S+ G + F ++ A +A++
Sbjct: 166 TQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 213
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 117 (46.2 bits), Expect = 0.00050, P = 0.00050
Identities = 41/168 (24%), Positives = 85/168 (50%)
Query: 93 GPT-LDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM- 150
GPT ++ S P + + L + + ++T+ ++ LF GE + + ++K+
Sbjct: 46 GPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKIT 105
Query: 151 -----FGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA-PINAAIK-----VKNLTSCV 199
+GF+ +A+KA L+G L+ +++K+ +A P +A+I+ V L +
Sbjct: 106 GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTM 165
Query: 200 TNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQALR 246
T + LE F +G I + ++VD+ G S+ G + F ++ A +A++
Sbjct: 166 TQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 213
>UNIPROTKB|B0LM41 [details] [associations]
symbol:RBM14/RBM4 fusion "Transcriptional coactivator CoAZ"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP001157 UniGene:Hs.533712
GeneID:100526737 CTD:100526737 ChiTaRS:RBM14-RBM4
HOGENOM:HOG000026790 HOVERGEN:HBG062217 UniGene:Hs.523822
EMBL:EU287938 IPI:IPI00719549 RefSeq:NP_001185774.1 SMR:B0LM41
STRING:B0LM41 Ensembl:ENST00000412278 KEGG:hsa:100526737
UCSC:uc009yrk.3 HGNC:HGNC:38840 OrthoDB:EOG4M65KF
GenomeRNAi:100526737 Uniprot:B0LM41
Length = 339
Score = 116 (45.9 bits), Expect = 0.00050, P = 0.00050
Identities = 34/116 (29%), Positives = 58/116 (50%)
Query: 115 RLYLGNI-GGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHV 173
++++GN+ G D T ++ LF PYG + K+ F F+ M A +A L GH
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQ--FAFVHMRENAGALRAIEALHGHE 59
Query: 174 LK-GRSLKIRFA---PINA-AIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDER 224
L+ GR+L + + P+N I V N+++ T++ L F G + V+ +R
Sbjct: 60 LRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKGKR 115
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 116 (45.9 bits), Expect = 0.00052, P = 0.00052
Identities = 41/168 (24%), Positives = 85/168 (50%)
Query: 93 GPT-LDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM- 150
GPT ++ S P + + L + + ++T+ ++ LF GE + + ++K+
Sbjct: 17 GPTTVNNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKIT 76
Query: 151 -----FGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA-PINAAIK-----VKNLTSCV 199
+GF+ +A+KA L+G L+ +++K+ +A P +A+I+ V L +
Sbjct: 77 GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTM 136
Query: 200 TNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQALR 246
T + LE F +G I + ++VD+ G S+ G + F ++ A +A++
Sbjct: 137 TQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 119 (46.9 bits), Expect = 0.00053, P = 0.00053
Identities = 45/197 (22%), Positives = 91/197 (46%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKA--KL 169
LY+G++ +++E + E+F G + + N + + ++Y + AD +A L
Sbjct: 12 LYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDTL 71
Query: 170 DGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNELLELAFGVFGDIERAIVIV 221
+ ++G++ +I ++ + +++ +KNL + ++ L F FG+I V+
Sbjct: 72 NNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVT 131
Query: 222 DERGNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTI 281
D+ +SK G V + + +A +A+ + G Q V V P + + E + T
Sbjct: 132 DDGNSSKGFGFVHYETQESADKAIAK-VNGMMINGQK---VFVGPFKSSKE---RGQPTE 184
Query: 282 NKKTPEFYKQ--RQVGP 296
K T F+K VGP
Sbjct: 185 VKFTNVFFKNLSEDVGP 201
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 117 (46.2 bits), Expect = 0.00054, P = 0.00054
Identities = 39/160 (24%), Positives = 79/160 (49%)
Query: 100 PSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGF 153
PS Q + L + + ++T+ + LF GE + + ++K+ +GF
Sbjct: 74 PSPMQTGGSNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGF 133
Query: 154 IRMDYKHNADKAKAKLDGHVLKGRSLKIRFA-PINAAIK-----VKNLTSCVTNELLELA 207
+ +A+KA L+G L+ +++K+ +A P +A+I+ V L +T + LE
Sbjct: 134 VNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQL 193
Query: 208 FGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQALR 246
F +G I + ++VD+ G S+ G + F ++ A +A++
Sbjct: 194 FSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIK 233
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 116 (45.9 bits), Expect = 0.00056, P = 0.00056
Identities = 41/168 (24%), Positives = 85/168 (50%)
Query: 93 GPT-LDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM- 150
GPT ++ S P + + L + + ++T+ ++ LF GE + + ++K+
Sbjct: 17 GPTTVNNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKIT 76
Query: 151 -----FGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA-PINAAIK-----VKNLTSCV 199
+GF+ +A+KA L+G L+ +++K+ +A P +A+I+ V L +
Sbjct: 77 GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTM 136
Query: 200 TNELLELAFGVFGDIERAIVIVDE-RGNSKCEGIVEFARKPAAAQALR 246
T + LE F +G I + ++VD+ G S+ G + F ++ A +A++
Sbjct: 137 TQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
>TAIR|locus:2087457 [details] [associations]
symbol:AT3G14100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005829 "cytosol" evidence=RCA] [GO:0006007
"glucose catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP000600 HSSP:P33240 KO:K13201 OMA:WAVEPGQ EMBL:AY139775
EMBL:BT004540 IPI:IPI00517194 RefSeq:NP_188026.1 UniGene:At.22594
UniGene:At.70203 ProteinModelPortal:Q9LJH8 SMR:Q9LJH8 IntAct:Q9LJH8
STRING:Q9LJH8 PRIDE:Q9LJH8 EnsemblPlants:AT3G14100.1 GeneID:820626
KEGG:ath:AT3G14100 TAIR:At3g14100 InParanoid:Q9LJH8
PhylomeDB:Q9LJH8 ProtClustDB:CLSN2682164 Genevestigator:Q9LJH8
Uniprot:Q9LJH8
Length = 427
Score = 117 (46.2 bits), Expect = 0.00058, P = 0.00058
Identities = 47/163 (28%), Positives = 79/163 (48%)
Query: 112 NNCR-LYLGNIGGDITENDIIELFKPYG--ETQELFINKEKM-FGFIRMDYKHNADKAKA 167
+ CR +Y+GNI +TE + E+F G E+ +L I K+K +GF+ + +A A
Sbjct: 56 STCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKL-IRKDKSSYGFVHYFDRRSAALAIL 114
Query: 168 KLDGHVLKGRSLKIRFAPINAA---------IKVKNLTSCVTNELLELAFGVFGDIERAI 218
L+G L G+ +K+ +A I V +L+ VT+ L +F VF A
Sbjct: 115 SLNGRHLFGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDAR 174
Query: 219 VIVDER-GNSKCEGIVEFARKPAAAQALRRCAEGCFFLTQSLR 260
V+ D++ G S+ G V F + A A+ G + ++ +R
Sbjct: 175 VMWDQKTGRSRGFGFVSFRNQQDAQTAINEM-NGKWLSSRQIR 216
>UNIPROTKB|F1P1R2 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00822335
Ensembl:ENSGALT00000013489 Uniprot:F1P1R2
Length = 621
Score = 95 (38.5 bits), Expect = 0.00059, Sum P(3) = 0.00059
Identities = 26/87 (29%), Positives = 45/87 (51%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFI------NKEKMFGFIRMDYKHNADKAKAK 168
RL++ N+ TE D+ ++F YG E+ K K F FI +A KA A+
Sbjct: 79 RLFVRNLPFTSTEEDLEKIFSKYGPLSEIHFPIDRLTKKPKGFAFITYMIPEHAVKAYAE 138
Query: 169 LDGHVLKGRSLKIRFAPINAAIKVKNL 195
+DG V +GR + + + I +K++++
Sbjct: 139 MDGQVFQGRMMHLLPSTIKK-LKIEDI 164
Score = 64 (27.6 bits), Expect = 0.00059, Sum P(3) = 0.00059
Identities = 33/115 (28%), Positives = 48/115 (41%)
Query: 192 VKNLTSCVTNELLELAFGVFGDIERAIVIV--DERGN--SKCEGIVEFARKPAAAQ-ALR 246
+KNL T L+ F G ++ + D+ G S G VE+ +KP +AQ ALR
Sbjct: 397 IKNLNFTTTEGTLKETFSKVGAVKSCTISKKKDKAGTLLSMGFGFVEY-KKPESAQKALR 455
Query: 247 RCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPRFATV 301
R +GC L I E ++T+ K+ R + P ATV
Sbjct: 456 RL-QGCIVDGHKLEVKISERAVRPAVKSSRKKQTVKKQKTSKILVRNI-PFQATV 508
Score = 44 (20.5 bits), Expect = 0.00059, Sum P(3) = 0.00059
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 343 EWEMKERQAEELKRR------DEELMKKHAEEMQLRLAQQEED 379
EW E E L+RR D KK +E + L Q EE+
Sbjct: 571 EWADTEETVEALRRRTADHFHDSPKKKKRSEMLGEILEQLEEE 613
>UNIPROTKB|D6RBS9 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00965845
ProteinModelPortal:D6RBS9 SMR:D6RBS9 Ensembl:ENST00000515053
ArrayExpress:D6RBS9 Bgee:D6RBS9 Uniprot:D6RBS9
Length = 217
Score = 111 (44.1 bits), Expect = 0.00064, P = 0.00064
Identities = 37/147 (25%), Positives = 66/147 (44%)
Query: 114 CRLYLGNIGGDITENDIIELFKPYGETQEL-----FINKEKMFGFIRMDYKHNADKAKAK 168
C +++G I D+ E++++ +F+ G EL F K + + F+ +KH A +A +
Sbjct: 71 CEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDGKNRGYAFVMYCHKHEAKRAVRE 130
Query: 169 LDGHVLK-GRSLKIRFAPINAAIKVKNLTSCVTNE-LLELAFGVFGDIERAIVIVDERGN 226
L+ + ++ GR L + + N + + + E +LE V + IV
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADK 190
Query: 227 SKCEGI--VEFARKPAAAQALRRCAEG 251
K G VE+ AAA A R+ G
Sbjct: 191 MKNRGFAFVEYESHRAAAMARRKLMPG 217
>UNIPROTKB|E5RGH3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00983093
ProteinModelPortal:E5RGH3 SMR:E5RGH3 Ensembl:ENST00000518196
ArrayExpress:E5RGH3 Bgee:E5RGH3 Uniprot:E5RGH3
Length = 108
Score = 94 (38.1 bits), Expect = 0.00067, P = 0.00067
Identities = 26/99 (26%), Positives = 50/99 (50%)
Query: 151 FGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFAPINAAIK--------VKNLTSCVTNE 202
+ ++ +A++A ++ V+KG+ ++I ++ + +++ +KNL + N+
Sbjct: 9 YAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNK 68
Query: 203 LLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAA 241
L F FG+I V+ DE G SK G V F + AA
Sbjct: 69 ALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAA 106
>TAIR|locus:2045605 [details] [associations]
symbol:ML2 "MEI2-like 2" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0045836 "positive regulation of meiosis" evidence=IMP]
[GO:0045927 "positive regulation of growth" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007126 GO:GO:0045927 EMBL:CP002685
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 HOGENOM:HOG000030212
GO:GO:0045836 InterPro:IPR007201 Pfam:PF04059 EMBL:AF101056
EMBL:AC006580 EMBL:AC006931 EMBL:AF367316 EMBL:AY143940
IPI:IPI00546291 PIR:E84859 RefSeq:NP_565990.1 UniGene:At.25505
ProteinModelPortal:Q9SJG8 SMR:Q9SJG8 STRING:Q9SJG8 PaxDb:Q9SJG8
PRIDE:Q9SJG8 EnsemblPlants:AT2G42890.1 GeneID:818890
KEGG:ath:AT2G42890 TAIR:At2g42890 eggNOG:NOG266727
InParanoid:Q9ASS1 OMA:DANDHEQ PhylomeDB:Q9SJG8
ProtClustDB:CLSN2688901 Genevestigator:Q9SJG8 Uniprot:Q9SJG8
Length = 843
Score = 120 (47.3 bits), Expect = 0.00070, P = 0.00070
Identities = 61/213 (28%), Positives = 96/213 (45%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYK--HNADKAKAKLDGHV 173
L++ NI + ++++ LF+P+GE + L+ K GF+ + Y A A L +
Sbjct: 200 LFVRNINSSVEDSELSALFEPFGEIRSLY-TACKSRGFVMISYYDIRAAHAAMRALQNTL 258
Query: 174 LKGRSLKIRFA-P--------IN-AAIKVKNLTSCVTN-ELLELAFGVFGDIERAIVIVD 222
L+ R+L I F+ P +N + + N+ + V+N ELL+L FG +G+I +
Sbjct: 259 LRKRTLDIHFSIPKENPSEKDMNQGTLVIFNVDTTVSNDELLQL-FGAYGEIRE----IR 313
Query: 223 ERGNSKCEGIVEF--ARKPAAA-QALRRCAEG--CFFLTQSLRPVIVEPLELTDEIDGLS 277
E N + +E+ R A +AL R G C L S RP L + + L
Sbjct: 314 ETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLELS-RPGGARRLSVPSQSQDL- 371
Query: 278 ERTINKKTPEFYKQRQVGPRFATVNSFEFEYGS 310
ERT + FY Q VG A + GS
Sbjct: 372 ERT---EVTNFYNQ--VGSHVANSPPGNWPIGS 399
>FB|FBgn0264270 [details] [associations]
symbol:Sxl "Sex lethal" species:7227 "Drosophila
melanogaster" [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=NAS;TAS] [GO:0019099 "female germ-line sex
determination" evidence=TAS] [GO:0007549 "dosage compensation"
evidence=NAS;TAS] [GO:0019101 "female somatic sex determination"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008187 "poly-pyrimidine tract binding" evidence=IDA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=TAS] [GO:0007541 "sex determination, primary response to
X:A ratio" evidence=NAS;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0030237 "female sex determination" evidence=NAS] [GO:0007131
"reciprocal meiotic recombination" evidence=TAS] [GO:0018993
"somatic sex determination" evidence=NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;TAS] [GO:0007530 "sex determination"
evidence=NAS;TAS] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0007281 "germ cell development" evidence=TAS] [GO:0007548 "sex
differentiation" evidence=NAS;TAS] [GO:0017148 "negative regulation
of translation" evidence=IMP;IDA;NAS;TAS] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA;TAS] [GO:0000900 "translation repressor
activity, nucleic acid binding" evidence=TAS] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=TAS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0007224 "smoothened signaling pathway"
evidence=IDA] [GO:0008083 "growth factor activity" evidence=IDA]
[GO:0007446 "imaginal disc growth" evidence=IMP] [GO:0009994
"oocyte differentiation" evidence=IDA] [GO:0043234 "protein
complex" evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006546
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0043234 GO:GO:0008266
GO:GO:0006355 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0048027 GO:GO:0003730 GO:GO:0007281
GO:GO:0008083 GO:GO:0007548 GO:GO:0007224 GO:GO:0007131
GO:GO:0009994 GO:GO:0000900 GO:GO:0048025 GO:GO:0019099
GO:GO:0000380 GO:GO:0007541 GO:GO:0007446 GO:GO:0007549
GO:GO:0019101 GeneTree:ENSGT00560000077064 EMBL:M23635 EMBL:M23636
EMBL:M59447 EMBL:M59448 EMBL:BT003583 EMBL:BT099922 EMBL:BT100240
EMBL:BT120392 EMBL:S88324 EMBL:D84425 PIR:A31639 PIR:A39725
RefSeq:NP_001027062.1 RefSeq:NP_001027063.1 RefSeq:NP_001027064.1
RefSeq:NP_001027065.1 RefSeq:NP_001027066.1 RefSeq:NP_001162686.1
RefSeq:NP_001162687.1 RefSeq:NP_001162688.1 RefSeq:NP_001162689.1
RefSeq:NP_001162690.1 RefSeq:NP_001162691.1 RefSeq:NP_001245559.1
RefSeq:NP_524791.3 RefSeq:NP_727160.2 RefSeq:NP_727161.2
RefSeq:NP_727162.2 RefSeq:NP_727163.2 RefSeq:NP_727164.2
RefSeq:NP_727165.2 RefSeq:NP_727166.2 RefSeq:NP_727167.2
RefSeq:NP_727168.1 UniGene:Dm.4502 PDB:1B7F PDB:1SXL PDB:2SXL
PDB:3SXL PDBsum:1B7F PDBsum:1SXL PDBsum:2SXL PDBsum:3SXL
ProteinModelPortal:P19339 SMR:P19339 IntAct:P19339 MINT:MINT-276991
STRING:P19339 PaxDb:P19339 PRIDE:P19339 EnsemblMetazoa:FBtr0331255
EnsemblMetazoa:FBtr0331262 EnsemblMetazoa:FBtr0331268
GeneID:3772180 KEGG:dme:Dmel_CG18350 CTD:3772180
FlyBase:FBgn0003659 eggNOG:NOG249299 InParanoid:P19339 OMA:HRDGAME
OrthoDB:EOG4F4QSS EvolutionaryTrace:P19339 NextBio:852740
Bgee:P19339 GermOnline:CG18350 TIGRFAMs:TIGR01659 Uniprot:P19339
Length = 354
Score = 115 (45.5 bits), Expect = 0.00071, P = 0.00071
Identities = 36/148 (24%), Positives = 72/148 (48%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM----FGFIRMDYKHNADKAK 166
A+N L + + D+T+ ++ LF+ G I ++ FG+ +D+ D +
Sbjct: 122 ASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQR 181
Query: 167 A--KLDGHVLKGRSLKIRFA-PINAAIK-----VKNLTSCVTNELLELAFGVFGDIERAI 218
A L+G ++ + LK+ +A P +IK V NL +T++ L+ FG +G I +
Sbjct: 182 AIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKN 241
Query: 219 VIVDE-RGNSKCEGIVEFARKPAAAQAL 245
++ D+ G + V + ++ A +A+
Sbjct: 242 ILRDKLTGRPRGVAFVRYNKREEAQEAI 269
>TAIR|locus:2115390 [details] [associations]
symbol:AT4G36700 "AT4G36700" species:3702 "Arabidopsis
thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0045735
"nutrient reservoir activity" evidence=IEA;ISS] InterPro:IPR006045
Pfam:PF00190 SMART:SM00835 GO:GO:0045735 Gene3D:2.60.120.10
InterPro:IPR014710 InterPro:IPR011051 SUPFAM:SSF51182 EMBL:CP002687
IPI:IPI00528137 RefSeq:NP_195388.2 UniGene:At.28140
ProteinModelPortal:F4JQG6 PRIDE:F4JQG6 EnsemblPlants:AT4G36700.1
GeneID:829823 KEGG:ath:AT4G36700 OMA:WACEISI Uniprot:F4JQG6
Length = 522
Score = 113 (44.8 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 314 QLHELYEHETEMLRKELAQREIDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQLRL 373
+ H E E E L+ E+ +++ID ER++ E K+ + EE KR +EE K+ EE + R
Sbjct: 434 ECHSCAEGEIEKLKVEIERKKIDDERKRRHDERKKEE-EEAKREEEERRKREEEEEKKRW 492
Query: 374 AQQ----EEDLRRRQ 384
Q EE+LR RQ
Sbjct: 493 PPQQPPQEEELRERQ 507
Score = 47 (21.6 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 24/81 (29%), Positives = 36/81 (44%)
Query: 230 EGIVEFAR---KPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTP 286
EGI+E R KP + C G T L+P + L+L G ++ NKK
Sbjct: 198 EGIIELMRNRTKPPLIVSETLCTPGVAN-TWQLQPRL---LKL---FAGSADLVDNKKKK 250
Query: 287 EFYKQRQVGPRFATVNSFEFE 307
E ++++ + T N FE E
Sbjct: 251 EKKEKKEKVKKAKTFNVFESE 271
>ZFIN|ZDB-GENE-040912-155 [details] [associations]
symbol:ncoa5 "nuclear receptor coactivator 5"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
InterPro:IPR004154 ZFIN:ZDB-GENE-040912-155 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 SUPFAM:SSF52954 Gene3D:3.40.50.800
GeneTree:ENSGT00530000064134 EMBL:CR847793 EMBL:CABZ01015279
IPI:IPI00864633 Ensembl:ENSDART00000124774 ArrayExpress:F1QRD4
Bgee:F1QRD4 Uniprot:F1QRD4
Length = 622
Score = 109 (43.4 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 26/87 (29%), Positives = 48/87 (55%)
Query: 99 PPSEPQNKDIKFANNCRLYLGNIG-GDITENDIIELFKPYGETQELFINKEKMFGFIRMD 157
PPS N + R+++GN+ + + D+ +LF+PYG+ Q L + + +GF++ +
Sbjct: 12 PPSYVTNSNDPRDLERRIFVGNLPTAHMAKKDMEDLFRPYGKIQALSLFRG--YGFVQFE 69
Query: 158 YKHNADKAKAKLDGHVLKGRSLKIRFA 184
+A+ AKA +G V +G L + A
Sbjct: 70 RLEDAEAAKAGHNGRVYRGYKLDVNMA 96
Score = 53 (23.7 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 25/105 (23%), Positives = 43/105 (40%)
Query: 272 EIDGLSERTINKKTPEFYKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELA 331
E+ S + T E + R+ S E E R + Y + + RK+
Sbjct: 143 EMRASSRESRPSSTREHEDRPPAEERYRGSESREKEPSLREEGYDRYYRGDYDYYRKK-- 200
Query: 332 QREIDRERQKAEWE-MKERQAEELK---RRDEELMKKHAEEMQLR 372
E +R + W +E + E ++ RR EL +++ EE+Q R
Sbjct: 201 -DEAYSDRYRDPWNGRREPEEERIRPEERRRNELYRQYYEELQKR 244
>ZFIN|ZDB-GENE-040426-1811 [details] [associations]
symbol:zgc:77262 "zgc:77262" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1811 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P19339 HOVERGEN:HBG002295 eggNOG:NOG294108
GeneTree:ENSGT00390000020883 EMBL:BX530031 EMBL:BC065633
IPI:IPI00497767 RefSeq:NP_991217.1 UniGene:Dr.6046
Ensembl:ENSDART00000065402 Ensembl:ENSDART00000145013 GeneID:402952
KEGG:dre:402952 InParanoid:Q6P0G2 OMA:HMAKERE NextBio:20816762
Uniprot:Q6P0G2
Length = 331
Score = 114 (45.2 bits), Expect = 0.00081, P = 0.00081
Identities = 30/110 (27%), Positives = 54/110 (49%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVL 174
++++GN+ TE+++ LF+ YG + I K +GF+ MD + A KA + L H +
Sbjct: 3 KIFVGNVASATTEDELRALFEKYGAVSDCDILKN--YGFVHMDEEEAAQKAVSALHKHEV 60
Query: 175 KGRSLKIRFAPI---NAA-IKVKNLTSCVTNELLELAFGVFGDIERAIVI 220
G + + +A NA I V N+ V ++ F FG + ++
Sbjct: 61 NGSRITVEYATTKVRNATKIYVGNVPEGVAAAKIKELFQPFGKVVECDIV 110
>WB|WBGene00007396 [details] [associations]
symbol:tiar-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
"calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
Length = 450
Score = 116 (45.9 bits), Expect = 0.00081, P = 0.00081
Identities = 23/70 (32%), Positives = 41/70 (58%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLD 170
A+N +Y+GNI T+ D+ +LF YG+ E+ I K + + F+R + K A KA +++
Sbjct: 324 ADNTSVYVGNISQQTTDADLRDLFSTYGDIAEVRIFKTQRYAFVRYEKKECATKAIMEMN 383
Query: 171 GHVLKGRSLK 180
G + G ++
Sbjct: 384 GKEMAGNQVR 393
>SGD|S000001444 [details] [associations]
symbol:IST3 "Component of the U2 snRNP" species:4932
"Saccharomyces cerevisiae" [GO:0000245 "spliceosomal complex
assembly" evidence=IMP] [GO:0000349 "generation of catalytic
spliceosome for first transesterification step" evidence=IMP]
[GO:0006406 "mRNA export from nucleus" evidence=IMP] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000384 "first spliceosomal
transesterification activity" evidence=IMP;IDA] [GO:0005686 "U2
snRNP" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IDA;IPI] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0070274 "RES complex" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000001444 GO:GO:0005737 GO:GO:0000166 EMBL:BK006942
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0006406
EMBL:X79743 EMBL:Z38062 GO:GO:0000349 GO:GO:0000245 GO:GO:0070274
GO:GO:0005686 eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107
OrthoDB:EOG441TN4 EMBL:AY558081 PIR:S48439 RefSeq:NP_012270.1
ProteinModelPortal:P40565 SMR:P40565 DIP:DIP-2076N IntAct:P40565
MINT:MINT-389778 STRING:P40565 PaxDb:P40565 PeptideAtlas:P40565
EnsemblFungi:YIR005W GeneID:854821 KEGG:sce:YIR005W CYGD:YIR005w
GeneTree:ENSGT00600000084414 OMA:YGVPVDV NextBio:977669
Genevestigator:P40565 GermOnline:YIR005W Uniprot:P40565
Length = 148
Score = 102 (41.0 bits), Expect = 0.00082, P = 0.00082
Identities = 23/90 (25%), Positives = 50/90 (55%)
Query: 98 LPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------F 151
L P + + + K +N +Y+GN+ ++TE DI+ +F YG ++ +++++ F
Sbjct: 17 LSPHQSWHNEYK--DNAYIYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTGESQGF 74
Query: 152 GFIRMDYKHNADKAKAKLDGHVLKGRSLKI 181
+++ + + + A L+G + GR+LKI
Sbjct: 75 AYLKYEDQRSTILAVDNLNGFKIGGRALKI 104
>ASPGD|ASPL0000055210 [details] [associations]
symbol:AN0917 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
OMA:YVEFRTI Uniprot:Q5BEW3
Length = 552
Score = 117 (46.2 bits), Expect = 0.00085, P = 0.00085
Identities = 27/83 (32%), Positives = 50/83 (60%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-----FGFIRMDYKHNADKAKAKL 169
RLY+GNI I END+ +F+P+GE + + + K++ +GF++ + A +A K+
Sbjct: 274 RLYVGNIHFSIDENDLQSVFEPFGELEFVQLQKDETGRSRGYGFVQFRDPNQAREALEKM 333
Query: 170 DGHVLKGRSLKI-----RFAPIN 187
+G+ L GR++++ +F P N
Sbjct: 334 NGYDLGGRAIRVGLGNDKFTPEN 356
>UNIPROTKB|F1MI47 [details] [associations]
symbol:RBM14 "RNA-binding protein 14" species:9913 "Bos
taurus" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0030374 "ligand-dependent
nuclear receptor transcription coactivator activity" evidence=IEA]
[GO:0016575 "histone deacetylation" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003676 GO:GO:0005667 GO:GO:0030374
GO:GO:0016575 GeneTree:ENSGT00390000020883 IPI:IPI00690613
UniGene:Bt.91172 OMA:SLTSYGA EMBL:DAAA02063594
Ensembl:ENSBTAT00000001619 Uniprot:F1MI47
Length = 669
Score = 118 (46.6 bits), Expect = 0.00086, P = 0.00086
Identities = 34/114 (29%), Positives = 57/114 (50%)
Query: 115 RLYLGNI-GGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHV 173
++++GN+ G D T ++ LF PYG + K+ F F+ M A +A L GH
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQ--FAFVHMRENAGAVRAIEALHGHE 59
Query: 174 LK-GRSLKIRFA---PINA-AIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD 222
L+ GR+L + + P+N I V N+++ T++ L F G + V+ D
Sbjct: 60 LRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD 113
>UNIPROTKB|Q5EA36 [details] [associations]
symbol:RBM14 "RNA-binding protein 14" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 EMBL:BT020733 IPI:IPI00690613
RefSeq:NP_001014901.1 UniGene:Bt.91172 ProteinModelPortal:Q5EA36
SMR:Q5EA36 STRING:Q5EA36 PRIDE:Q5EA36 GeneID:511512 KEGG:bta:511512
CTD:10432 HOGENOM:HOG000065673 HOVERGEN:HBG053180 InParanoid:Q5EA36
KO:K13189 OrthoDB:EOG45X7XS NextBio:20869968 Uniprot:Q5EA36
Length = 669
Score = 118 (46.6 bits), Expect = 0.00086, P = 0.00086
Identities = 34/114 (29%), Positives = 57/114 (50%)
Query: 115 RLYLGNI-GGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHV 173
++++GN+ G D T ++ LF PYG + K+ F F+ M A +A L GH
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQ--FAFVHMRENAGAVRAIEALHGHE 59
Query: 174 LK-GRSLKIRFA---PINA-AIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD 222
L+ GR+L + + P+N I V N+++ T++ L F G + V+ D
Sbjct: 60 LRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD 113
>MGI|MGI:1929092 [details] [associations]
symbol:Rbm14 "RNA binding motif protein 14" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016575 "histone deacetylation" evidence=ISO]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1929092 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0006351
GO:GO:0003723 GO:GO:0005667 GO:GO:0030374 GO:GO:0016575
eggNOG:COG0724 GeneTree:ENSGT00390000020883 CTD:10432
HOGENOM:HOG000065673 HOVERGEN:HBG053180 KO:K13189 OrthoDB:EOG45X7XS
OMA:SLTSYGA ChiTaRS:RBM14 EMBL:AK004928 EMBL:AK088201 EMBL:AK167503
EMBL:BC010294 IPI:IPI00404707 IPI:IPI00649362 RefSeq:NP_063922.2
UniGene:Mm.276338 UniGene:Mm.441002 ProteinModelPortal:Q8C2Q3
SMR:Q8C2Q3 DIP:DIP-58946N IntAct:Q8C2Q3 STRING:Q8C2Q3
PhosphoSite:Q8C2Q3 PaxDb:Q8C2Q3 PRIDE:Q8C2Q3
Ensembl:ENSMUST00000006625 GeneID:56275 KEGG:mmu:56275
UCSC:uc008gay.1 UCSC:uc008gaz.1 InParanoid:Q8C2Q3 NextBio:312164
Bgee:Q8C2Q3 CleanEx:MM_RBM14 Genevestigator:Q8C2Q3
GermOnline:ENSMUSG00000006456 Uniprot:Q8C2Q3
Length = 669
Score = 118 (46.6 bits), Expect = 0.00086, P = 0.00086
Identities = 34/114 (29%), Positives = 57/114 (50%)
Query: 115 RLYLGNI-GGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHV 173
++++GN+ G D T ++ LF PYG + K+ F F+ M A +A L GH
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQ--FAFVHMRENAGAVRAIEALHGHE 59
Query: 174 LK-GRSLKIRFA---PINA-AIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD 222
L+ GR+L + + P+N I V N+++ T++ L F G + V+ D
Sbjct: 60 LRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD 113
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 105 (42.0 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 27/104 (25%), Positives = 54/104 (51%)
Query: 89 MAIQGPTLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGE--TQELFIN 146
+ +Q T+ + + P ++ IK AN LY+ + +T+ D+ ++F P+G + ++
Sbjct: 84 LRLQSKTIKVSVARPSSESIKDAN---LYISGLPRTMTQKDVEDMFLPFGRIINSRVLVD 140
Query: 147 K----EKMFGFIRMDYKHNADKAKAKLDGHVLKGRS--LKIRFA 184
+ + FIR D + A++A A +GH G S + ++FA
Sbjct: 141 QATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFA 184
Score = 49 (22.3 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 19/58 (32%), Positives = 24/58 (41%)
Query: 190 IKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGI--VEFARKPAAAQAL 245
I + NL +L FG FG + VI D N KC+G V AA A+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTN-KCKGFGFVTMTNYEEAAMAI 302
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 98 (39.6 bits), Expect = 0.00087, Sum P(2) = 0.00087
Identities = 26/91 (28%), Positives = 47/91 (51%)
Query: 100 PSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGE------TQELFINKEKMFGF 153
PS Q KD +N+ +++G++ +IT DI F P+G+ +++ K K +GF
Sbjct: 102 PSS-QKKDT--SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 158
Query: 154 IRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184
+ K +A+ A + G L GR ++ +A
Sbjct: 159 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 189
Score = 59 (25.8 bits), Expect = 0.00087, Sum P(2) = 0.00087
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 184 APINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQ 243
+P N + + S +T++L+ F FG I I + E+G S V F+ +AA
Sbjct: 217 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIME-IRVFPEKGYS----FVRFSTHESAAH 271
Query: 244 AL 245
A+
Sbjct: 272 AI 273
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 98 (39.6 bits), Expect = 0.00087, Sum P(2) = 0.00087
Identities = 26/91 (28%), Positives = 47/91 (51%)
Query: 100 PSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGE------TQELFINKEKMFGF 153
PS Q KD +N+ +++G++ +IT DI F P+G+ +++ K K +GF
Sbjct: 103 PSS-QKKDT--SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 159
Query: 154 IRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184
+ K +A+ A + G L GR ++ +A
Sbjct: 160 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 190
Score = 59 (25.8 bits), Expect = 0.00087, Sum P(2) = 0.00087
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 184 APINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQ 243
+P N + + S +T++L+ F FG I I + E+G S V F+ +AA
Sbjct: 218 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIME-IRVFPEKGYS----FVRFSTHESAAH 272
Query: 244 AL 245
A+
Sbjct: 273 AI 274
>UNIPROTKB|Q9Y4C8 [details] [associations]
symbol:RBM19 "Probable RNA-binding protein 19" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISS;IDA] [GO:0040019 "positive regulation of embryonic
development" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV EMBL:AB014582 EMBL:AL117547
EMBL:AC009731 EMBL:AC073863 EMBL:AC090669 EMBL:BC004289
EMBL:BC006137 IPI:IPI00000686 PIR:T17297 RefSeq:NP_001140170.1
RefSeq:NP_001140171.1 RefSeq:NP_057280.2 UniGene:Hs.7482 PDB:2DGW
PDBsum:2DGW ProteinModelPortal:Q9Y4C8 SMR:Q9Y4C8 MINT:MINT-1196129
STRING:Q9Y4C8 PhosphoSite:Q9Y4C8 DMDM:308153566 SWISS-2DPAGE:Q9Y4C8
PaxDb:Q9Y4C8 PRIDE:Q9Y4C8 DNASU:9904 Ensembl:ENST00000261741
Ensembl:ENST00000392561 Ensembl:ENST00000545145 GeneID:9904
KEGG:hsa:9904 UCSC:uc001tvm.3 CTD:9904 GeneCards:GC12M114259
HGNC:HGNC:29098 HPA:HPA038860 neXtProt:NX_Q9Y4C8
PharmGKB:PA134886784 HOVERGEN:HBG055637 InParanoid:Q9Y4C8
OrthoDB:EOG4D7Z56 PhylomeDB:Q9Y4C8 ChiTaRS:RBM19
EvolutionaryTrace:Q9Y4C8 GenomeRNAi:9904 NextBio:37345 Bgee:Q9Y4C8
CleanEx:HS_RBM19 Genevestigator:Q9Y4C8 GermOnline:ENSG00000122965
Uniprot:Q9Y4C8
Length = 960
Score = 103 (41.3 bits), Expect = 0.00088, Sum P(3) = 0.00088
Identities = 27/77 (35%), Positives = 40/77 (51%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQEL------FINKEKMFGFIRMDYKHNADK 164
A + RL++ N+ TE D+ +LF YG EL K K F FI + +A K
Sbjct: 399 AESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVK 458
Query: 165 AKAKLDGHVLKGRSLKI 181
A +++DG V +GR L +
Sbjct: 459 AYSEVDGQVFQGRMLHV 475
Score = 60 (26.2 bits), Expect = 0.00088, Sum P(3) = 0.00088
Identities = 23/64 (35%), Positives = 30/64 (46%)
Query: 190 IKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALRRCA 249
I VKNL + L+ FG FG + R V++ E G + IVEF A +A R A
Sbjct: 589 ILVKNLPAGTLAAQLQETFGHFGSLGR--VLLPEGGIT---AIVEFLEPLEARKAFRHLA 643
Query: 250 EGCF 253
F
Sbjct: 644 YSKF 647
Score = 44 (20.5 bits), Expect = 0.00088, Sum P(3) = 0.00088
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 6 FSNEQEVNQLYQARLRSYTG 25
FSNE+EV Q + R Y G
Sbjct: 340 FSNEEEVKQALKCN-REYMG 358
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 98 (39.6 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 26/91 (28%), Positives = 47/91 (51%)
Query: 100 PSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGE------TQELFINKEKMFGF 153
PS Q KD +N+ +++G++ +IT DI F P+G+ +++ K K +GF
Sbjct: 103 PSS-QKKDT--SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 159
Query: 154 IRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184
+ K +A+ A + G L GR ++ +A
Sbjct: 160 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 190
Score = 59 (25.8 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 184 APINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQ 243
+P N + + S +T++L+ F FG I I + E+G S V F+ +AA
Sbjct: 218 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIME-IRVFPEKGYS----FVRFSTHESAAH 272
Query: 244 AL 245
A+
Sbjct: 273 AI 274
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 98 (39.6 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 26/91 (28%), Positives = 47/91 (51%)
Query: 100 PSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGE------TQELFINKEKMFGF 153
PS Q KD +N+ +++G++ +IT DI F P+G+ +++ K K +GF
Sbjct: 103 PSS-QKKDT--SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 159
Query: 154 IRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184
+ K +A+ A + G L GR ++ +A
Sbjct: 160 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 190
Score = 59 (25.8 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 184 APINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQ 243
+P N + + S +T++L+ F FG I I + E+G S V F+ +AA
Sbjct: 218 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIME-IRVFPEKGYS----FVRFSTHESAAH 272
Query: 244 AL 245
A+
Sbjct: 273 AI 274
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.135 0.393 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 503 404 0.00099 117 3 11 22 0.40 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 209
No. of states in DFA: 604 (64 KB)
Total size of DFA: 254 KB (2137 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 46.35u 0.11s 46.46t Elapsed: 00:00:03
Total cpu time: 46.39u 0.11s 46.50t Elapsed: 00:00:03
Start: Thu Aug 15 14:36:08 2013 End: Thu Aug 15 14:36:11 2013
WARNINGS ISSUED: 1