RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy93
(503 letters)
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 74.2 bits (182), Expect = 3e-17
Identities = 35/82 (42%), Positives = 58/82 (70%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168
F RL++GN+ DITE ++ +LF+ YG+ E+FI+K+K FGFIR++ + A+ AK +
Sbjct: 4 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVE 63
Query: 169 LDGHVLKGRSLKIRFAPINAAI 190
LD L+G+ L++RFA +A++
Sbjct: 64 LDNMPLRGKQLRVRFACHSASL 85
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 73.9 bits (181), Expect = 6e-17
Identities = 19/73 (26%), Positives = 37/73 (50%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDG 171
NC +Y G I +T+ + + F P+G+ E+ + EK + F+R +A A ++G
Sbjct: 17 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNG 76
Query: 172 HVLKGRSLKIRFA 184
++G +K +
Sbjct: 77 TTIEGHVVKCYWG 89
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 63.4 bits (154), Expect = 2e-13
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINK-----EKMFGFIRMDYKHNADKAKAKL 169
+L + N+ +++ DI ELF +G ++ ++ + + K +A KA +
Sbjct: 2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQY 61
Query: 170 DGHVLKGRSLKIRFAP 185
+G L GR + I+
Sbjct: 62 NGVPLDGRPMNIQLVT 77
Score = 37.2 bits (86), Expect = 3e-04
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 190 IKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALR 246
+ V NL V++ ++ F FG +++A V D G S V F RK A +A++
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMK 59
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 62.7 bits (152), Expect = 5e-13
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 110 FANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNAD 163
+C LY+GN+ TE I ELF G+ +++ + +KM F F+ + +A+
Sbjct: 4 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAE 63
Query: 164 KAKAKLDGHVLKGRSLKIRFAP 185
A ++G L R ++ +
Sbjct: 64 NAMRYINGTRLDDRIIRTDWDA 85
Score = 29.5 bits (66), Expect = 0.24
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 192 VKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCE-GIVEFARKPAAAQALR 246
V NL+ T E + F GDI++ I+ +D+ + C VE+ + A A+R
Sbjct: 12 VGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMR 67
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 62.0 bits (150), Expect = 7e-13
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAK 166
+ LY+ + +T+ ++ +LF YG I +++ GFIR D + A++A
Sbjct: 6 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 65
Query: 167 AKLDGHVLKGRSLKIR 182
L+G G + I
Sbjct: 66 KGLNGQKPSGATEPIT 81
Score = 30.4 bits (68), Expect = 0.087
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 187 NAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD-ERGNSKCEGIVEFARKPAAAQAL 245
+A + V L +T + LE F +G I + ++VD G S+ G + F ++ A +A+
Sbjct: 6 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 65
Query: 246 R 246
+
Sbjct: 66 K 66
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 60.8 bits (147), Expect = 1e-12
Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFG------FIRMDYKHNADKA 165
+N L + + D+T+ ++ LF+ G I ++ G F+ + ++ +A
Sbjct: 1 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRA 60
Query: 166 KAKLDGHVLKGRSLKIRFA 184
L+G ++ + LK+ +A
Sbjct: 61 IKVLNGITVRNKRLKVSYA 79
Score = 33.0 bits (75), Expect = 0.009
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 187 NAAIKVKNLTSCVTNELLELAFGVFGDIERA-IVIVDERGNSKCEGIVEFARKPAAAQAL 245
N + V L +T+ L F G I I+ + G S V+F + + +A+
Sbjct: 2 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAI 61
Query: 246 R 246
+
Sbjct: 62 K 62
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 60.8 bits (147), Expect = 2e-12
Identities = 16/70 (22%), Positives = 31/70 (44%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVL 174
LY+ N+ +E I + F + K + + F+ + +A +A L+G VL
Sbjct: 10 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVL 69
Query: 175 KGRSLKIRFA 184
G +++ A
Sbjct: 70 DGSPIEVTLA 79
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 60.7 bits (147), Expect = 2e-12
Identities = 16/75 (21%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKL 169
LY+G++ D+TE + E F P G + + ++ + + ++ +A++A +
Sbjct: 3 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 62
Query: 170 DGHVLKGRSLKIRFA 184
+ V+KG+ ++I ++
Sbjct: 63 NFDVIKGKPVRIMWS 77
Score = 37.2 bits (86), Expect = 3e-04
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 188 AAIKVKNLTSCVTNELLELAFGVFGDIERA-IVIVDERGNSKCEGIVEFARKPAAAQALR 246
A++ V +L VT +L F G I + S V F + A +AL
Sbjct: 1 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 60
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 60.4 bits (146), Expect = 3e-12
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 9/78 (11%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI---------NKEKMFGFIRMDYKHNADKAK 166
L++ N+ TE + +F G + I FGF+ A KA
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 167 AKLDGHVLKGRSLKIRFA 184
+L GH + G L++R +
Sbjct: 61 KQLQGHTVDGHKLEVRIS 78
Score = 32.3 bits (73), Expect = 0.024
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 192 VKNLTSCVTNELLELAFGVFGDIERAIVI----VDERGNSKCEGIVEFARKPAAAQALR 246
+KNL T E L+ F G I+ + S G VE+ + A +AL+
Sbjct: 3 IKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALK 61
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 60.0 bits (145), Expect = 4e-12
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAK 166
+ LY+ N+ IT++ + +F YG + I ++K+ F+R + + A +A
Sbjct: 6 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAI 65
Query: 167 AKLDGHVLKG--RSLKIRFA 184
+ L+ + +G + L +R A
Sbjct: 66 SALNNVIPEGGSQPLSVRLA 85
Score = 34.9 bits (80), Expect = 0.003
Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 187 NAAIKVKNLTSCVTNELLELAFGVFGDIE-RAIVIVDERGNSKCEGIVEFARKPAAAQAL 245
+ + V NL +T++ L+ FG +G I + I+ G + V + ++ A +A+
Sbjct: 6 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAI 65
Query: 246 R 246
Sbjct: 66 S 66
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 59.2 bits (143), Expect = 5e-12
Identities = 14/77 (18%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 114 CRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFG------FIRMDYKHNADKAKA 167
C++++G + T+ + E F +GE +E + ++ + F+ + DK
Sbjct: 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV-L 59
Query: 168 KLDGHVLKGRSLKIRFA 184
H L +++ + A
Sbjct: 60 AQSRHELDSKTIDPKVA 76
Score = 33.4 bits (76), Expect = 0.007
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 192 VKNLTSCVTNELLELAFGVFGDIERAIVIVDER-GNSKCEGIVEFARKPAAAQAL 245
+ L+ T E L FG FG+++ +V+ D S+ G V F + + L
Sbjct: 5 IGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL 59
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 59.2 bits (143), Expect = 8e-12
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEK-------MFGFIRMDYKHNADKA 165
++ + NI + +I ELF +GE + + + K+ FGF+ K +A KA
Sbjct: 8 TSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKA 67
Query: 166 KAKL-DGHVLKGRSLKIRFAPINAAIK 191
L L GR L + +A ++
Sbjct: 68 FNALCHSTHLYGRRLVLEWADSEVTVQ 94
Score = 41.1 bits (96), Expect = 2e-05
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 2/73 (2%)
Query: 190 IKVKNLTSCVTNELLELAFGVFGDIERAIVIVDER--GNSKCEGIVEFARKPAAAQALRR 247
I V+N+ + F FG+++ + G + G V+F K A +A
Sbjct: 11 ILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNA 70
Query: 248 CAEGCFFLTQSLR 260
+ L
Sbjct: 71 LCHSTHLYGRRLV 83
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 59.3 bits (143), Expect = 9e-12
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKA 165
+ +Y+G + ++E + ELF G + K+ + +GF+ + +AD A
Sbjct: 8 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYA 67
Query: 166 KAKLDGHVLKGRSLKIRFA 184
+D L G+ +++ A
Sbjct: 68 IKIMDMIKLYGKPIRVNKA 86
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 58.5 bits (141), Expect = 2e-11
Identities = 15/92 (16%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Query: 99 PPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGF 153
P + Q+ D + + + + E E+ + YGE +E+ + + +
Sbjct: 13 PQNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVY 72
Query: 154 IRMDYKHNADKAKAKLDGHVLKGRSLKIRFAP 185
++ + +A+KA L+ G+ + +P
Sbjct: 73 VKFRREEDAEKAVIDLNNRWFNGQPIHAELSP 104
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 57.5 bits (138), Expect = 2e-11
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGE------TQELFINKEKMFGFIRMDYKHNADKAK 166
C L++ N T+ +I +L + L N + F +I + K +A
Sbjct: 1 ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCV 60
Query: 167 AKLDGHVLKGRSLKIRFA-PI 186
KL+G ++G +L + + P+
Sbjct: 61 EKLNGLKIEGYTLVTKVSNPL 81
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 57.7 bits (139), Expect = 3e-11
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKA 165
+N + + N+ D E D+ ELF+P+G +++ K+K F FI + +A +A
Sbjct: 7 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARA 66
Query: 166 KAKLDGHVLKGRSLKIRFA 184
A + G L + +A
Sbjct: 67 IAGVSGFGYDHLILNVEWA 85
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 57.6 bits (139), Expect = 4e-11
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 111 ANNCRLYLGNIGGDIT-ENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKL 169
+ N R+++GN+ + ++D+ +F YG+ ++K F F++ + NA A A
Sbjct: 13 SMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHK--GFAFVQYVNERNARAAVAGE 70
Query: 170 DGHVLKGRSLKIRFA 184
DG ++ G+ L I A
Sbjct: 71 DGRMIAGQVLDINLA 85
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 56.6 bits (136), Expect = 6e-11
Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFIN------KEKMFGFIRMDYKHNADKAKAK 168
+L++G + + ++ + EL +G + + K + F + D+A A
Sbjct: 3 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 62
Query: 169 LDGHVLKGRSLKIRFA 184
L+G L + L ++ A
Sbjct: 63 LNGMQLGDKKLLVQRA 78
Score = 27.7 bits (61), Expect = 0.94
Identities = 9/56 (16%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 192 VKNLTSCVTNELLELAFGVFGDIERAIVIVDERGN-SKCEGIVEFARKPAAAQALR 246
+ L + + ++ ++ FG ++ ++ D SK E+ QA+
Sbjct: 6 IGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 61
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 56.6 bits (136), Expect = 6e-11
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 10/82 (12%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFI--------NKEKMFGFIRMDYKHNADK 164
NCRL++G I +I+E E I K + F F+ + A
Sbjct: 1 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAM 60
Query: 165 AKAKLDGH--VLKGRSLKIRFA 184
A+ KL L G + + +A
Sbjct: 61 ARRKLMPGRIQLWGHQIAVDWA 82
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 56.1 bits (135), Expect = 7e-11
Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 7/76 (9%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKEK------MFGFIRMDYKHNADKAKAK 168
++++G + D E I E F +GE + + + + F FI + K +
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI-ME 59
Query: 169 LDGHVLKGRSLKIRFA 184
H + +I+ A
Sbjct: 60 KKYHNVGLSKCEIKVA 75
Score = 29.5 bits (66), Expect = 0.15
Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 192 VKNLTSCVTNELLELAFGVFGDIERAIVIVDER-GNSKCEGIVEFARKPAAAQALR 246
V L+ E + FG FG++E + +D + + + F + + +
Sbjct: 4 VGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 59
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 55.5 bits (133), Expect = 1e-10
Identities = 16/76 (21%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFI------NKEKMFGFIRMDYKHNADKAKAK 168
L + + ++T+ + LF GE + + + +GF+ +A+KA
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 63
Query: 169 LDGHVLKGRSLKIRFA 184
L+G L+ +++K+ +A
Sbjct: 64 LNGLRLQTKTIKVSYA 79
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 56.6 bits (136), Expect = 1e-10
Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYG---ETQELFINKEKMFGFIRMDYKHNADKAKAK 168
N LY+ N+ IT ++ ++F YG + + + + ++ + +A A
Sbjct: 6 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDH 65
Query: 169 LDGHVLKGRSLKIRFAPINAAIK 191
L G + R L + + N A +
Sbjct: 66 LSGFNVCNRYLVVLYYNANRAFQ 88
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 55.0 bits (132), Expect = 1e-10
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGH 172
LY+ D+T + F P+G +L ++ + F+ + +AD+A A+L+G
Sbjct: 5 GNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGT 62
Query: 173 VLKGRSLKIRFA 184
++ LK+ A
Sbjct: 63 QVESVQLKVNIA 74
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 55.1 bits (132), Expect = 2e-10
Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDG 171
+ + G +G ++ N ++ + + G L + K + F R + +A L+G
Sbjct: 19 QSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNG 78
Query: 172 H-VLKGRSLKIRF 183
V+ KI
Sbjct: 79 KEVVDDLGQKITL 91
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 55.0 bits (132), Expect = 3e-10
Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Query: 96 LDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM-FGFI 154
L+ P + + + L N+ +ITE+++ E+F+ E + + + + +I
Sbjct: 4 LEDPCTSKKVRA-----ARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYI 58
Query: 155 RMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184
+ +A+K + G + GRS+ + +
Sbjct: 59 EFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 54.3 bits (130), Expect = 4e-10
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEK----MFGFIRMDYKHNADKAK 166
LY+GN+ D+TE I++LF G + + E + F+ +A A
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAAL 65
Query: 167 AKLDGHVLKGRSLKIRFA 184
A ++G + G+ +K+ +A
Sbjct: 66 AAMNGRKILGKEVKVNWA 83
Score = 26.5 bits (58), Expect = 2.2
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 192 VKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFARKPAAAQALR 246
V NL+ VT L+ F G + +I + ++ VEF AA AL
Sbjct: 13 VGNLSRDVTEVLILQLFSQIGPCKSCKMITE-HTSNDPYCFVEFYEHRDAAAALA 66
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 54.3 bits (130), Expect = 4e-10
Identities = 13/79 (16%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 116 LYLGNIG-GDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKA--KLDGH 172
+++ + G +++L +P+G I + FI M +A A
Sbjct: 11 VHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPA 70
Query: 173 VLKGRSLKIRFAPINAAIK 191
++ G+ +++ + IK
Sbjct: 71 LVFGKPVRVHLSQKYKRIK 89
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 54.3 bits (130), Expect = 4e-10
Identities = 12/79 (15%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 113 NCRLYLGNIGGDITENDI----IELFKPYGETQELFINKE---KMFGFIRMDYKHNADKA 165
N +Y+ N+ I ++++ +F +G+ ++ +++ + F+ +A A
Sbjct: 3 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNA 62
Query: 166 KAKLDGHVLKGRSLKIRFA 184
+ G + ++I++A
Sbjct: 63 LRSMQGFPFYDKPMRIQYA 81
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 54.3 bits (130), Expect = 4e-10
Identities = 19/78 (24%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFG----FIRMDYKHNADKAK 166
+ RL++ NI + D+ ++F +G+ ++ I + F+ + +AD+A+
Sbjct: 9 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAR 68
Query: 167 AKLDGHVLKGRSLKIRFA 184
KL G V++GR +++ A
Sbjct: 69 EKLHGTVVEGRKIEVNNA 86
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 53.9 bits (129), Expect = 7e-10
Identities = 13/78 (16%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFG------FIRMDYKHNADKAK 166
L++ ++ + + D++++F P+G + +K F+ D +A A
Sbjct: 18 GANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAI 77
Query: 167 AKLDGHVLKGRSLKIRFA 184
++G + + LK++
Sbjct: 78 QSMNGFQIGMKRLKVQLK 95
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 53.2 bits (127), Expect = 8e-10
Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDG-HV 173
+LY+GN+ +T +D+ +LF + + + F+ ++ A +A L G
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVE 62
Query: 174 LKGRSLKIRFA 184
L G+ +++ ++
Sbjct: 63 LHGKIMEVDYS 73
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 53.2 bits (127), Expect = 1e-09
Identities = 16/78 (20%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMF------GFIRMDYKHNADKAK 166
L++ +I + E++I E F YGE + + +N ++ + + A AK
Sbjct: 7 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAK 66
Query: 167 AKLDGHVLKGRSLKIRFA 184
L+G + G+++++ +
Sbjct: 67 EALNGAEIMGQTIQVDWC 84
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 52.3 bits (125), Expect = 1e-09
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKEK------MFGFIRMDYKHNADKAKAK 168
++++G + D T+ D+ + F +GE + + + FGF+ + DK
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV-MD 59
Query: 169 LDGHVLKGRSLKIRFA 184
H L G+ + + A
Sbjct: 60 QKEHKLNGKVIDPKRA 75
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 52.0 bits (124), Expect = 2e-09
Identities = 11/76 (14%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAK 168
++++G + + T D+ F+ +G+ + + + + FGF+ + + +K +
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVC-E 59
Query: 169 LDGHVLKGRSLKIRFA 184
+ H + + ++ + A
Sbjct: 60 IHFHEINNKMVECKKA 75
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 52.0 bits (124), Expect = 2e-09
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAK 166
NC L + + TE D+ E+F YG ++ I + + F F+ + +A +AK
Sbjct: 9 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAK 68
Query: 167 AKLDGHVLKGRSLKI 181
+ +G L GR +++
Sbjct: 69 ERANGMELDGRRIRV 83
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 52.4 bits (125), Expect = 2e-09
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINK---EKMFGFIRMDYKHNADKAKAK 168
N+CR+Y+GN+ DI DI ++F YG +++ + F F+ + +A+ A
Sbjct: 13 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYG 72
Query: 169 LDGHVLKGRSLKIRFA 184
DG+ G L++ F
Sbjct: 73 RDGYDYDGYRLRVEFP 88
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 52.3 bits (125), Expect = 2e-09
Identities = 14/77 (18%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFI----NKEKMFGFIRMDYKHNADKAKA 167
+++ N+ I + + F +G + N K +GF+ + + A++A
Sbjct: 7 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIE 66
Query: 168 KLDGHVLKGRSLKIRFA 184
K++G +L R + +
Sbjct: 67 KMNGMLLNDRKVFVGRF 83
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 52.4 bits (125), Expect = 2e-09
Identities = 17/70 (24%), Positives = 32/70 (45%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGH 172
RL++G +G + + + F +G + + K F +I+ + A A AK+ G
Sbjct: 17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGF 76
Query: 173 VLKGRSLKIR 182
L G ++R
Sbjct: 77 PLGGPDRRLR 86
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 51.6 bits (123), Expect = 4e-09
Identities = 14/76 (18%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAKAK 168
+L++G + + T+ + F+ +G + + ++ + FGF+ D A
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-N 66
Query: 169 LDGHVLKGRSLKIRFA 184
H + GR ++ + A
Sbjct: 67 ARPHKVDGRVVEPKRA 82
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 51.7 bits (123), Expect = 4e-09
Identities = 12/77 (15%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDG 171
+ + + N+ D ++ +L K Y ++ F+ + A A
Sbjct: 4 GSSGILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTA-FVTLLNGEQAQNAIQMFHQ 62
Query: 172 HVLKGRSLKIRFAPINA 188
+ +G+ L ++ P +A
Sbjct: 63 YSFRGKDLIVQLQPTDA 79
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 52.0 bits (124), Expect = 4e-09
Identities = 18/96 (18%), Positives = 42/96 (43%), Gaps = 9/96 (9%)
Query: 95 TLDLPPSEPQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKM---- 150
TL+ P E + ++ + +L++G + + TE + ++ +G+ + + ++
Sbjct: 4 TLETVPLERKKREKE--QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRS 61
Query: 151 --FGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184
FGF+ D A H + GR ++ + A
Sbjct: 62 RGFGFVTFSSMAEVDAAM-AARPHSIDGRVVEPKRA 96
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 51.6 bits (123), Expect = 4e-09
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEK------MFGFIRMDYKHNADK 164
+ + RL++ N+ +E D+ +LF YG EL + F F+ + +A K
Sbjct: 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVK 65
Query: 165 AKAKLDGHVLKGRSLKIRFA 184
A A++DG V +GR L + +
Sbjct: 66 AYAEVDGQVFQGRMLHVLPS 85
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 51.6 bits (123), Expect = 5e-09
Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQE--LFINKEKMFGFIRMDYKHNADKAKAKLDGH 172
R+ + N+ +T + + ++F +G + F + ++ +A AK LDG
Sbjct: 9 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQ 68
Query: 173 VLKGRSLKIRFA 184
+ +R
Sbjct: 69 NIYNACCTLRID 80
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 50.9 bits (121), Expect = 5e-09
Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFI-------NKEKMFGFIRMDYKHNADKAKAK 168
+++GN+ +I E + + F +G + K + FI +D A
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 169 LDGHVLKGRSLKIRFA 184
++G L R + + +A
Sbjct: 61 MNGQYLCNRPITVSYA 76
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 51.3 bits (122), Expect = 6e-09
Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 14/87 (16%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIR--------------MD 157
+N +Y+ + +T +D+ + FK G + + M +
Sbjct: 7 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYE 66
Query: 158 YKHNADKAKAKLDGHVLKGRSLKIRFA 184
A A DG +G LK+ A
Sbjct: 67 DPPTAKAAVEWFDGKDFQGSKLKVSLA 93
Score = 27.4 bits (60), Expect = 1.2
Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 9/71 (12%)
Query: 185 PINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVD---------ERGNSKCEGIVEF 235
N+AI V+ L VT + L F G ++ E G K + V +
Sbjct: 6 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSY 65
Query: 236 ARKPAAAQALR 246
P A A+
Sbjct: 66 EDPPTAKAAVE 76
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 50.0 bits (119), Expect = 1e-08
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDG 171
+ +++G GD+TE+++ E F YG+ ++FI K F + + + +
Sbjct: 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPK-PFRAFAFVTFADDQIAQSLCGED 62
Query: 172 HVLKGRSLKIRFA 184
++KG S+ I A
Sbjct: 63 LIIKGISVHISNA 75
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 49.7 bits (118), Expect = 1e-08
Identities = 15/76 (19%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAK 168
LY+G + ++ + + F P+G+ ++ I + F F+ + +A A
Sbjct: 7 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 66
Query: 169 LDGHVLKGRSLKIRFA 184
++ L GR++++ A
Sbjct: 67 MNESELFGRTIRVNLA 82
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 49.4 bits (117), Expect = 3e-08
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEK------MFGFIRMDYKHNADKAK 166
N LYL N+ +TE D++ LF + E + I FI K A +A
Sbjct: 18 NKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQAL 77
Query: 167 AKLDGHVLKGRSLKIRFA 184
++G+ L G+ L I F
Sbjct: 78 HLVNGYKLYGKILVIEFG 95
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 51.2 bits (121), Expect = 3e-08
Identities = 23/150 (15%), Positives = 50/150 (33%), Gaps = 18/150 (12%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIR----MDYKHNADKAKA-KL 169
+L++G + + T+ + F+ +G + + ++ R + Y + A
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 170 DGHVLKGRSLKIRFAPIN------------AAIKVKNLTSCVTNELLELAFGVFGDIERA 217
H + GR ++ + A I V + L F +G IE
Sbjct: 68 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 127
Query: 218 IVIVD-ERGNSKCEGIVEFARKPAAAQALR 246
++ D G + V F + + +
Sbjct: 128 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 157
Score = 44.6 bits (104), Expect = 6e-06
Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
Query: 103 PQNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELF------INKEKMFGFIRM 156
+ ++++G I D E+ + + F+ YG+ + + K++ F F+
Sbjct: 87 DSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 146
Query: 157 DYKHNADKAKAKLDGHVLKGRSLKIRFA 184
D + DK H + G + ++R A
Sbjct: 147 DDHDSVDKI-VIQKYHTVNGHNCEVRKA 173
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 49.0 bits (116), Expect = 4e-08
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADKAK 166
+LGN+ D+TE I E F+ + + K FG+ + + A
Sbjct: 15 PYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL 74
Query: 167 AKLDGHVLKGRSLKIRFA 184
L+ L + +++ A
Sbjct: 75 -SLNEESLGNKRIRVDVA 91
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 48.0 bits (113), Expect = 5e-08
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLK 175
+ + + GD+T ++ +L Y E + F++K K F+ + A+ A L+
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDY-ELKYCFVDKYKGTAFVTLLNGEQAEAAINTFHQSRLR 59
Query: 176 GRSLKIRFAPINAAI 190
R L ++ P +A +
Sbjct: 60 ERELSVQLQPTDALL 74
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 47.3 bits (112), Expect = 1e-07
Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 8/76 (10%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAK 168
L + + TE D+ E F +GE + + K+ FGF+R K ++
Sbjct: 10 DLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 69
Query: 169 LDGHVLKGRSLKIRFA 184
H++ GR +
Sbjct: 70 R--HMIDGRWCDCKLP 83
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 47.4 bits (112), Expect = 1e-07
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFI-----------NKEKMFGFIRMDYKHNAD 163
RLY+GNI ITE +++ F L N++K F F+
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 62
Query: 164 KAKAKLDGHVLKGRSLKIR 182
+A DG + +G+SLKIR
Sbjct: 63 QAM-AFDGIIFQGQSLKIR 80
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 47.0 bits (111), Expect = 1e-07
Identities = 16/76 (21%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKEK------MFGFIRMDYKHNADKAKAK 168
++++G I D E+ + + F+ YG+ + + I ++ F F+ D H++
Sbjct: 4 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFD-DHDSVDKIVI 62
Query: 169 LDGHVLKGRSLKIRFA 184
H + G + ++R A
Sbjct: 63 QKYHTVNGHNCEVRKA 78
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 47.5 bits (112), Expect = 2e-07
Identities = 8/78 (10%), Positives = 29/78 (37%), Gaps = 2/78 (2%)
Query: 109 KFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAK 168
K + + +++ + + E D++E + +G + + K + + +A +
Sbjct: 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTF 70
Query: 169 LDGH--VLKGRSLKIRFA 184
+ G+ ++
Sbjct: 71 AADVPVYIAGQQAFFNYS 88
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 47.4 bits (112), Expect = 2e-07
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 113 NCRLYLGNIGGD-ITENDIIELFKPYGETQELFINKE-KMFGFIRMDYKHNADKAKAKLD 170
N L + N+ + +T + LF YG+ Q + I K ++M + A A + L+
Sbjct: 2 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLN 61
Query: 171 GHVLKGRSLKIRFA 184
GH L G+ ++I +
Sbjct: 62 GHKLHGKPIRITLS 75
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 46.9 bits (111), Expect = 2e-07
Identities = 14/93 (15%), Positives = 33/93 (35%), Gaps = 8/93 (8%)
Query: 99 PPSEP-QNKDIKFANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMF 151
P EP N + + ++ + I D+ + F G+ +++ I + K
Sbjct: 3 PVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGI 62
Query: 152 GFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184
++ + L G L G + ++ +
Sbjct: 63 AYVEFCEIQSVPL-AIGLTGQRLLGVPIIVQAS 94
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 46.7 bits (110), Expect = 2e-07
Identities = 18/80 (22%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 111 ANNCRLYLGNIGGDITENDIIELFKPYGETQELFINKE------KMFGFIRMDYKHNADK 164
++ +L++G + D E + ++F YG+ E+ + K+ + FGF+ + +A
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 165 AKAKLDGHVLKGRSLKIRFA 184
A ++G + GR +++ A
Sbjct: 63 AMMAMNGKSVDGRQIRVDQA 82
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 46.4 bits (109), Expect = 3e-07
Identities = 14/74 (18%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKA--KAKLD 170
+ L++ + G++TE ++I L P+G+ + + K K F+ + + A
Sbjct: 8 SRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAV 67
Query: 171 GHVLKGRSLKIRFA 184
L+ + + I+++
Sbjct: 68 TPHLRNQPIYIQYS 81
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 46.3 bits (109), Expect = 3e-07
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 105 NKDIKFANNCRLYLGNIGGDITENDIIELFKPYGE--TQELFINKEKMFGFIRMDYKHNA 162
N F + L+L NI ++E D+ LF G F K++ I+M A
Sbjct: 2 NFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEA 61
Query: 163 DKAKAKLDGHVL-KGRSLKIRFA 184
+A L H L + L++ F+
Sbjct: 62 VQALIDLHNHDLGENHHLRVSFS 84
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 45.4 bits (107), Expect = 4e-07
Identities = 9/79 (11%), Positives = 25/79 (31%), Gaps = 6/79 (7%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFI------NKEKMFGFIRMDYKHNADKA 165
+ + N+ ++ ++I++ F Y + + + A A
Sbjct: 8 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAA 67
Query: 166 KAKLDGHVLKGRSLKIRFA 184
L+ + R +K+
Sbjct: 68 VIDLNDRPIGSRKVKLVLG 86
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 45.9 bits (108), Expect = 5e-07
Identities = 14/83 (16%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEK------MFGFIRMDYKHNADKA 165
++++G + T+ + + F+ +G+ +E + ++ +GF+ M + A++A
Sbjct: 9 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 68
Query: 166 KAKLDGHVLKGRSLKIRFAPINA 188
+ ++ GR + A + A
Sbjct: 69 CKDPN-PIIDGRKANVNLAYLGA 90
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 44.9 bits (106), Expect = 6e-07
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 3/74 (4%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDG 171
++ + + I+ F YG + ++ + IR K A KA DG
Sbjct: 3 DDTWVTVFGFPQASAS-YILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKAL-SKDG 60
Query: 172 HVLKGRSLKIRFAP 185
+ + I P
Sbjct: 61 RIFGESIM-IGVKP 73
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 45.2 bits (106), Expect = 8e-07
Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 6/81 (7%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGE-----TQELFINKEKMFGFIRMDYKHNADKAK 166
+ LY+ N+ + E ++ + KP+G+ + GF RM+ +
Sbjct: 17 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVI 76
Query: 167 AKLDGHVLKGRSLKIRFA-PI 186
+G +K P+
Sbjct: 77 GHFNGKFIKTPPGVSAPTEPL 97
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 46.1 bits (108), Expect = 9e-07
Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 7/101 (6%)
Query: 91 IQGPTLDLPPSEPQNKDIKFANNCR-LYLGNIGGDITENDIIELFKPYGETQELFINKEK 149
+Q P + + R L + I + E + +LF+ YG + + I ++
Sbjct: 19 LQQLQQQQQQHIPPTQMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDR 78
Query: 150 MF------GFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184
GF++ +A +A A L+G + + LK+ A
Sbjct: 79 ETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 44.8 bits (105), Expect = 1e-06
Identities = 14/78 (17%), Positives = 24/78 (30%), Gaps = 5/78 (6%)
Query: 112 NNCRLYLGNIGGDITE-----NDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAK 166
+ L D+ LF+ Y + K I +A A+
Sbjct: 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADAR 63
Query: 167 AKLDGHVLKGRSLKIRFA 184
+L G+ +K+ FA
Sbjct: 64 LRLHKTEFLGKEMKLYFA 81
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 44.0 bits (103), Expect = 2e-06
Identities = 11/80 (13%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Query: 113 NCRLYLGNIGGDITENDIIE-LFKPYGETQELFIN-------KEKMFGFIRMDYKHNADK 164
+ + N+ ++ + +++ F+ +G +++ I F+ + K +A++
Sbjct: 4 GREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAER 63
Query: 165 AKAKLDGHVLKGRSLKIRFA 184
A +++ +L R + + A
Sbjct: 64 AL-QMNRSLLGNREISVSLA 82
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 43.6 bits (102), Expect = 3e-06
Identities = 9/73 (12%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDG 171
++ R+ + + + D+ + + G+ ++ G + K + + A KLD
Sbjct: 14 SDFRVLVSGLPPSGSWQDLKDHMREAGDVCY-ADVQKDGMGMVEYLRKEDMEYALRKLDD 72
Query: 172 HVLKGRSLKIRFA 184
+ + +
Sbjct: 73 TKFRSHEGETSYI 85
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 43.6 bits (102), Expect = 4e-06
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGET----QELFINKEKMFGFIRMDYKH--NADKAKAK 168
+++GNI + TE + ++F G K G+ +Y+ A A
Sbjct: 10 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69
Query: 169 LDGHVLKGRSLKIRFA 184
L+G GR+L++ A
Sbjct: 70 LNGREFSGRALRVDNA 85
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 42.4 bits (99), Expect = 4e-06
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKM------FGFIRMDYKHNADKAKAKL 169
LY+ + T+ D+++L +PYG+ +K +GF+ D A KA L
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 170 DGHVLKGRSLK 180
++ + K
Sbjct: 61 KASGVQAQMAK 71
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 42.6 bits (99), Expect = 5e-06
Identities = 12/78 (15%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFI-----NKEKMFGFIRMDYKHNADKAK 166
L++GN+ + + ++ +L + + FG++ + + +KA
Sbjct: 12 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKA- 70
Query: 167 AKLDGHVLKGRSLKIRFA 184
+L G + G +K+
Sbjct: 71 LELTGLKVFGNEIKLEKP 88
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 42.5 bits (99), Expect = 7e-06
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 12/84 (14%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEK------MFGFIRMDYKHNADKAK 166
+++ N+ D E + E+ + +G+ + + + F + + A K
Sbjct: 8 GKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCL 67
Query: 167 AKL------DGHVLKGRSLKIRFA 184
A G L GR LK+ A
Sbjct: 68 AAASLEAEGGGLKLDGRQLKVDLA 91
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 42.1 bits (98), Expect = 8e-06
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Query: 113 NCRLYLGNIGGDITENDIIELFKP-YGETQELFINKEKMFGFIRMDYKHNADKAKAKLDG 171
N L+L N+ + E + LF G + + F+ + ++ AK L G
Sbjct: 8 NQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQG 67
Query: 172 HVL-KGRSLKIRFA 184
+ ++KI FA
Sbjct: 68 FKITPTHAMKITFA 81
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 42.6 bits (99), Expect = 8e-06
Identities = 13/75 (17%), Positives = 24/75 (32%)
Query: 113 NCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGH 172
+ N+ +I E F +G + + + + + A KA L
Sbjct: 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYS 69
Query: 173 VLKGRSLKIRFAPIN 187
L + +API
Sbjct: 70 KFHHVPLYLEWAPIG 84
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 40.5 bits (94), Expect = 3e-05
Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 4/77 (5%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKA---- 167
N +Y+ D T +DI E + G+ + + + F + A
Sbjct: 5 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFV 64
Query: 168 KLDGHVLKGRSLKIRFA 184
+ G K L I F
Sbjct: 65 ETPGQKYKETDLLILFK 81
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 40.9 bits (95), Expect = 4e-05
Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKH-NADKAKAKLDGHVL 174
+ G++ D+ LF +GE + + + G I K A + L
Sbjct: 14 KFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNL 73
Query: 175 KGRSLKIRF 183
+ R+ ++ +
Sbjct: 74 QLRNKEVTW 82
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 39.5 bits (91), Expect = 6e-05
Identities = 9/70 (12%), Positives = 22/70 (31%), Gaps = 1/70 (1%)
Query: 115 RLYLGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVL 174
R+ + + + D+ + + G+ G + K + A KLD
Sbjct: 2 RVVVSGLPPSGSWQDLKDHMREAGDVCY-ADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 60
Query: 175 KGRSLKIRFA 184
+ + +
Sbjct: 61 RSHEGETAYI 70
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 39.5 bits (92), Expect = 9e-05
Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 2/60 (3%)
Query: 127 ENDIIELFKPYGETQEL--FINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLKIRFA 184
D+ +G+ ++L F + AD LDG GR + +
Sbjct: 33 REDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAW 92
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 39.0 bits (90), Expect = 1e-04
Identities = 10/79 (12%), Positives = 32/79 (40%), Gaps = 12/79 (15%)
Query: 115 RLYLGNIGGDITENDIIELF---KPYGETQELFINKEKM---------FGFIRMDYKHNA 162
+++ + + + ++++ +G+ ++ IN ++ +A
Sbjct: 10 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDA 69
Query: 163 DKAKAKLDGHVLKGRSLKI 181
+A ++ V+ GR+LK
Sbjct: 70 LRAIQCVNNVVVDGRTLKA 88
>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 99
Score = 38.8 bits (89), Expect = 1e-04
Identities = 19/90 (21%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 99 PPSEPQNK-DIKFANNCRLYLGNIG-GDITENDIIELFKPYGETQELFINKEKMFGFIRM 156
P +P K D K ++L N+ +++ +++L +PYG+ + + + K FI M
Sbjct: 3 PEGKPDQKFDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEM 62
Query: 157 DYKHNADK--AKAKLDGHVLKGRSLKIRFA 184
+ + +A +GR +K+ +
Sbjct: 63 ETREDAMAMVDHCLKKALWFQGRCVKVDLS 92
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 39.1 bits (91), Expect = 2e-04
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 313 KQLHELYEHETEMLRK--ELAQREIDRERQKAEWEMKERQAEELKRRDEELMK-----KH 365
K L E EHE E+++K E I ++K +M+ + L + KH
Sbjct: 67 KHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKH 126
Query: 366 AEEMQLRLAQQE 377
AEE++ +E
Sbjct: 127 AEEVRKNKELKE 138
Score = 31.4 bits (71), Expect = 0.11
Identities = 13/73 (17%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 317 ELYEHETEMLRKELAQREIDRERQKAEWEMKERQAEELKRRDEE---LMKKHAEEMQLRL 373
L E + ++ E ++ + E K E +E + E +++ EE +K E++ ++
Sbjct: 43 SLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKM 102
Query: 374 AQQEEDLRRRQND 386
+E+
Sbjct: 103 ESNKENREAHLAA 115
Score = 30.6 bits (69), Expect = 0.16
Identities = 12/58 (20%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 327 RKELAQREIDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQ 384
R++ + EI ++ + AE E ++ Q EL + E + E +Q + + ++ +
Sbjct: 39 RRDPSLEEIQKKLEAAE-ERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAK 95
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 75
Score = 37.5 bits (86), Expect = 2e-04
Identities = 9/73 (12%), Positives = 23/73 (31%), Gaps = 5/73 (6%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKE----KMFGFIRMDYKHNADKAKAKLDG 171
+ + N+ +N + + FK G + + F I +++ A
Sbjct: 3 VLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEF-ARYDGALAAITKTH 61
Query: 172 HVLKGRSLKIRFA 184
V+ + +
Sbjct: 62 KVVGQNEIIVSHL 74
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4
[TaxId: 9606]}
Length = 144
Score = 37.9 bits (88), Expect = 6e-04
Identities = 14/77 (18%), Positives = 32/77 (41%), Gaps = 11/77 (14%)
Query: 313 KQLHELYEHETEMLRKELAQREIDRERQKAEWEMKE------RQAEELKRRDEELMKKHA 366
++ E + + L +++ R + E + EEL+ R + H
Sbjct: 66 EETRARLSKELQAAQARL-GADMEDVRGRLVQYRGEVQAMLGQSTEELRVR----LASHL 120
Query: 367 EEMQLRLAQQEEDLRRR 383
+++ RL + +DL++R
Sbjct: 121 RKLRKRLLRDADDLQKR 137
Score = 26.7 bits (59), Expect = 4.4
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 6/81 (7%)
Query: 309 GSRWKQLHEL---YEHE-TEMLRKELAQREIDRERQKAEWEMKERQAEELKRRDE--ELM 362
G RW+ Y + + + + Q+ M E E + E E +
Sbjct: 2 GQRWELALGRFWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQL 61
Query: 363 KKHAEEMQLRLAQQEEDLRRR 383
AEE + RL+++ + + R
Sbjct: 62 TPVAEETRARLSKELQAAQAR 82
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 39.0 bits (90), Expect = 0.001
Identities = 13/73 (17%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 311 RWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQ 370
+ +Q+ E E + K+L +++ +R + E + A +L+ +++ L + +E +
Sbjct: 229 KNEQMMEQKERSYQEHLKQL-TEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESR 287
Query: 371 LRLAQQEEDLRRR 383
+ + +DL+ +
Sbjct: 288 -IMKNEIQDLQTK 299
Score = 33.9 bits (77), Expect = 0.037
Identities = 10/78 (12%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 311 RWKQLHELYEHETEMLRKELAQREIDRERQKAEW--EMKERQAEELKRRDEELMKKHAEE 368
K LHE+ +M+ ++ + + +Q E + + +E +R +++ +
Sbjct: 219 SAKMLHEMQRKNEQMMEQKERSYQ-EHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQL 277
Query: 369 MQLRLAQQEEDLRRRQND 386
++ ++ ++ D
Sbjct: 278 LKEGFQKESRIMKNEIQD 295
Score = 33.2 bits (75), Expect = 0.054
Identities = 15/86 (17%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 311 RWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQ 370
+ Q E E E+ R + + + E+ E+ +R +E +K+ E+M+
Sbjct: 194 QTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKME 253
Query: 371 LRLAQQEEDLRRRQNDNSMFLVEQQQ 396
+ ++ + ++ L Q+Q
Sbjct: 254 -----NDRVQLLKEQERTLALKLQEQ 274
Score = 31.6 bits (71), Expect = 0.18
Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 5/84 (5%)
Query: 307 EYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKERQAEE--LKRRDE---EL 361
+ + + EM RK E + + + E ++ E L
Sbjct: 208 VERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTL 267
Query: 362 MKKHAEEMQLRLAQQEEDLRRRQN 385
K E+ QL +++ R +N
Sbjct: 268 ALKLQEQEQLLKEGFQKESRIMKN 291
Score = 27.4 bits (60), Expect = 4.1
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
Query: 304 FEFEYGSRWKQLHELYEHETEMLRKEL------AQREIDRERQKAEWEMKERQAEELKRR 357
E Y KQL E E++ L KE +E ++ ++ + E++
Sbjct: 237 KERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDL 296
Query: 358 DEEL 361
++
Sbjct: 297 QTKM 300
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 36.3 bits (83), Expect = 0.001
Identities = 12/76 (15%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
Query: 112 NNCRLYLGNIGGDITENDIIELFKPYGETQELFINKEK--MFGFIRMDYKHNADKAKA-K 168
+++ + TENDI F P + + G +++ + D A
Sbjct: 14 TGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMA 73
Query: 169 LDGHVLKGRSLKIRFA 184
D ++ R +++
Sbjct: 74 KDKANMQHRYVELFLN 89
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
{Burkholderia glumae [TaxId: 337]}
Length = 280
Score = 38.1 bits (88), Expect = 0.002
Identities = 21/162 (12%), Positives = 46/162 (28%), Gaps = 13/162 (8%)
Query: 236 ARKPAAAQALRRCAEGCFFLTQSLRPVIVEPLEL-------TDEIDGLSERTINKKTPEF 288
R A + L AE F Q + +E + + ++ + TP+
Sbjct: 112 QRAALADRTLGEWAEPFFGDEQRRQRHDLERIRIANDTTLSPEQKAARLAALDAQLTPDE 171
Query: 289 YKQRQVGPRFATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMK- 347
Q+ + + ++ + L E A R ++ W+ +
Sbjct: 172 RAQQAALHAQQDAVTKIADLQKAGATPDQMRAQIAQTLGPEAAARAAQMQQDDEAWQTRY 231
Query: 348 ---ERQAEELKRRDEELMKKHAEEMQLR--LAQQEEDLRRRQ 384
+ + + + + A QLR + R
Sbjct: 232 QAYAAERDRIAAQGLAPQDRDARIAQLRQQTFTAPGEAIRAA 273
Score = 32.7 bits (74), Expect = 0.082
Identities = 6/71 (8%), Positives = 19/71 (26%), Gaps = 2/71 (2%)
Query: 311 RWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKERQAEELKRRDEELMKKH--AEE 368
+ + + R ++ + ++ R +L ++ A
Sbjct: 208 TLGPEAAARAAQMQQDDEAWQTRYQAYAAERDRIAAQGLAPQDRDARIAQLRQQTFTAPG 267
Query: 369 MQLRLAQQEED 379
+R A +
Sbjct: 268 EAIRAASLDRG 278
Score = 30.0 bits (67), Expect = 0.53
Identities = 12/66 (18%), Positives = 24/66 (36%)
Query: 319 YEHETEMLRKELAQREIDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEE 378
+ + ++ L QR +R EW E+ ++R + + A + L Q+
Sbjct: 99 DKLDPAAMQLALDQRAALADRTLGEWAEPFFGDEQRRQRHDLERIRIANDTTLSPEQKAA 158
Query: 379 DLRRRQ 384
L
Sbjct: 159 RLAALD 164
Score = 29.2 bits (65), Expect = 1.00
Identities = 11/83 (13%), Positives = 24/83 (28%), Gaps = 10/83 (12%)
Query: 318 LYEHETEMLRKELAQREIDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQLR--LAQ 375
+ E R +L + I + + E+ R L + + + +
Sbjct: 128 FFGDEQRRQRHDLERIRIANDTTLSP--------EQKAARLAALDAQLTPDERAQQAALH 179
Query: 376 QEEDLRRRQNDNSMFLVEQQQGR 398
++D + D Q R
Sbjct: 180 AQQDAVTKIADLQKAGATPDQMR 202
Score = 28.5 bits (63), Expect = 2.1
Identities = 9/91 (9%), Positives = 23/91 (25%), Gaps = 8/91 (8%)
Query: 314 QLHELYEHETEMLRKELAQRE--------IDRERQKAEWEMKERQAEELKRRDEELMKKH 365
+L R LA R E+++ +++ + E
Sbjct: 100 KLDPAAMQLALDQRAALADRTLGEWAEPFFGDEQRRQRHDLERIRIANDTTLSPEQKAAR 159
Query: 366 AEEMQLRLAQQEEDLRRRQNDNSMFLVEQQQ 396
+ +L E + + + +
Sbjct: 160 LAALDAQLTPDERAQQAALHAQQDAVTKIAD 190
>d1rw6a_ a.47.4.1 (A:) CAPPD, an extracellular domain of amyloid
beta A4 protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 192
Score = 34.4 bits (79), Expect = 0.015
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 319 YEHETEMLRKELAQREIDRERQKA---EWEMKERQAEELKRRDEELMKKHAEEMQLRLAQ 375
EH + + RER EWE ERQA+ L + D++ + +H +E L Q
Sbjct: 13 NEHA-HFQKAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQ 71
Query: 376 QEEDLRRR 383
+ + R++
Sbjct: 72 EAANERQQ 79
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 33.0 bits (75), Expect = 0.017
Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 8/70 (11%)
Query: 124 DITENDIIELFKPYGETQELFINKEKM--------FGFIRMDYKHNADKAKAKLDGHVLK 175
+ D+ + YG + + I + F+ + KA L G
Sbjct: 25 EEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFA 84
Query: 176 GRSLKIRFAP 185
R + ++
Sbjct: 85 NRVVVTKYCD 94
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 32.5 bits (73), Expect = 0.026
Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 5/74 (6%)
Query: 116 LYLGNIGGDITENDIIELFKPYGETQELFINKEK----MFGFIRMDYKHNADKAKA-KLD 170
++ NI IT+ D+++ + + G + +K+ D K+ +L
Sbjct: 11 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLH 70
Query: 171 GHVLKGRSLKIRFA 184
L GR +
Sbjct: 71 RKKLNGREAFVHVV 84
>d1u2ma_ f.48.1.1 (A:) Periplasmic chaperon skp (HlpA) {Escherichia
coli [TaxId: 562]}
Length = 143
Score = 29.2 bits (65), Expect = 0.59
Identities = 12/82 (14%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
Query: 312 WKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQL 371
+ E+E + EL QR + K + + + + ++++M + Q
Sbjct: 21 KTGVSNTLENEFKGRASEL-QRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQK 79
Query: 372 RLAQQEEDLRRRQNDNSMFLVE 393
A +++ RR + +
Sbjct: 80 AQAFEQDRARRSNEERGKLVTR 101
>d1ij5a_ a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-binding
protein LAV1-2) {Physarum polycephalum [TaxId: 5791]}
Length = 321
Score = 30.0 bits (66), Expect = 0.65
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Query: 313 KQLHELYEHETEMLRKELAQREIDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQLR 372
K++HE E + L + DR+R +A+ KE E+ + E K E
Sbjct: 15 KKVHENLEELQKKLDHTSFAHKEDRDRLEAQIAQKE--QEQKAKLAEYDQKVQNEFDARE 72
Query: 373 LAQQEEDLRRRQNDN 387
A++E + R
Sbjct: 73 RAEREREAARGDAAA 87
>d2peoa1 a.280.1.1 (A:1-115) RuBisCo chaperone RbcX {Anabaena sp.
[TaxId: 1167]}
Length = 115
Score = 27.4 bits (61), Expect = 1.6
Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 10/64 (15%)
Query: 309 GSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWE---MKERQAEELKRRDEELMKKH 365
G ++ + EL+ + +LA R + AE + E +++ + E ++H
Sbjct: 52 GEKY--IEELFLE-----KPDLALRIMTVREHIAEEIAEFLPEMVVTGIQQANMEKRRQH 104
Query: 366 AEEM 369
E M
Sbjct: 105 LERM 108
>d1aqta1 a.2.10.1 (A:87-136) Epsilon subunit of F1F0-ATP synthase
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 50
Score = 26.1 bits (58), Expect = 1.6
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 345 EMKERQAEELKRRDEELMKKHAEEMQLRLAQQE 377
++ E +A E KR+ EE + ++ A E
Sbjct: 2 DLDEARAMEAKRKAEEHISSSHGDVDYAQASAE 34
>d1swxa_ a.224.1.1 (A:) Glycolipid transfer protein, GLTP {Human
(Homo sapiens) [TaxId: 9606]}
Length = 202
Score = 28.3 bits (63), Expect = 1.6
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 9/53 (16%)
Query: 128 NDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGRSLK 180
+ + F G +F I+ D N K KA D + K R+L+
Sbjct: 21 SHLPPFFDCLGSP---------VFTPIKADISGNITKIKAVYDTNPAKFRTLQ 64
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 26.8 bits (59), Expect = 2.2
Identities = 11/70 (15%), Positives = 22/70 (31%)
Query: 320 EHETEMLRKELAQREIDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEED 379
E + L +E E + + Q E K+ EE +++ + L +
Sbjct: 22 ELLSNGELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSPQ 81
Query: 380 LRRRQNDNSM 389
R +
Sbjct: 82 DRAAYKEYIS 91
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 503
Score = 28.1 bits (61), Expect = 2.7
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 345 EMKERQAEEL-----KRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLVEQQQ 396
E++ R+ + +RDE L K+ A +E+ + + F + QQ
Sbjct: 20 ELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQ 76
>d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein
PF1790 {Pyrococcus furiosus [TaxId: 2261]}
Length = 194
Score = 27.7 bits (61), Expect = 2.8
Identities = 13/85 (15%), Positives = 29/85 (34%), Gaps = 4/85 (4%)
Query: 303 SFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKERQA--EELKRRDEE 360
E + +E+ + ++ +M+E EL R E
Sbjct: 81 RLEILLTPTLFGSEMYEAKGVRKSPEYEQAKELIKSQEPINVKMRELAEFLHELNERIRE 140
Query: 361 LMKKHAE--EMQLRLAQQEEDLRRR 383
++++ E E ++ + E+ RR
Sbjct: 141 IIEEKRELEEARILIETYIENTMRR 165
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 27.9 bits (61), Expect = 3.9
Identities = 7/57 (12%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 314 QLHELYEHETEMLRKELAQ--REIDRERQKAEWEMKERQAEELKRRDEELMKKHAEE 368
++ L + + L K+ + E++ + + ++ + + +E +++ AE
Sbjct: 702 RIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAEA 758
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 276
Score = 27.4 bits (60), Expect = 4.6
Identities = 13/59 (22%), Positives = 21/59 (35%)
Query: 334 EIDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLV 392
I E E E+ E DE +M K+ E + + +R+ D + V
Sbjct: 194 PIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITPV 252
>d1ocya_ d.231.1.1 (A:) Receptor-binding domain of short tail fibre
protein gp12 {Bacteriophage T4 [TaxId: 10665]}
Length = 198
Score = 26.8 bits (58), Expect = 4.8
Identities = 12/121 (9%), Positives = 21/121 (17%), Gaps = 5/121 (4%)
Query: 381 RRRQNDNSMFLVEQQQGRGGS-----GGYGSPGQAYGNAIIDFEALAAAVGNAVVGNVTG 435
+ +F+ +G + G G G
Sbjct: 61 PGLPDMRGLFVRGSGRGSHLTNPNVNGNDQFGKPRLGVGCTGGYVGEVQKQQMSYHKHAG 120
Query: 436 VDNKGSAMDFDQGGRSGGGGGRRNDSASSGWSRREGGAGRWGPSVDHGSRRGGSGGGGPT 495
+ R G R S P+ SR +
Sbjct: 121 GFGEYDDSGAFGNTRRSNFVGTRKGLDWDNRSYFTNDGYEIDPASQRNSRYTLNRPELIG 180
Query: 496 D 496
+
Sbjct: 181 N 181
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 26.5 bits (57), Expect = 6.7
Identities = 7/37 (18%), Positives = 15/37 (40%)
Query: 344 WEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDL 380
+ ++L+ R + A+ +Q RL +L
Sbjct: 119 VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIEL 155
>d2p5ia1 d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacillus
halodurans [TaxId: 86665]}
Length = 265
Score = 26.6 bits (58), Expect = 7.0
Identities = 8/47 (17%), Positives = 15/47 (31%), Gaps = 3/47 (6%)
Query: 319 YEHETEMLRKELAQREIDRERQK---AEWEMKERQAEELKRRDEELM 362
L Q + EW + E+ + R+E+L+
Sbjct: 219 VSDVLLKALMTLQQHGASLLTESLSADEWLLYEQHFARISERNEKLL 265
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 26.9 bits (59), Expect = 7.1
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 298 FATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRER 339
F +++F + K+ + E E +M R +LA+ + ++ER
Sbjct: 290 FMDLHNFRNMFLQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 26.6 bits (58), Expect = 7.4
Identities = 42/265 (15%), Positives = 78/265 (29%), Gaps = 51/265 (19%)
Query: 118 LGNIGGDITENDIIELFKPYGETQELFINKEKMFGFIRMDYKHNADKAKAKLDGHVLKGR 177
+ G D + KP EL ++ G +D +K A
Sbjct: 127 VVGAGKAEGAVDAGNMLKPALARGEL-----RLIGATTLDEYREIEKDPA---------- 171
Query: 178 SLKIRFAPINAAIKVKNLTSCVTNELLELAFGVFGDIERAIVIVDERGNSKCEGIVEFAR 237
L+ RF P+ T + L E ++ + I D +
Sbjct: 172 -LERRFQPVYVDEPTVEETISILRGLKE-----KYEVHHGVRISDS----AIIAAATLSH 221
Query: 238 KPAAAQALRRCAEGCFFLTQSLRPVIVEPLELTDEIDGLSERTINKKTPEFYKQRQVGPR 297
+ + L A ++L DE + E
Sbjct: 222 RYITERRLPDKA-----------------IDLIDEAAARLRMALESAPEEIDAL------ 258
Query: 298 FATVNSFEFEYGSRWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKERQAEELKRR 357
E E + K+ + + + E+A+ + + +AEWE + +L+
Sbjct: 259 ERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREA 318
Query: 358 DEELMKKHAEEMQLRLAQQEEDLRR 382
L + E + LA+++ DL R
Sbjct: 319 QHRLDEVRRE---IELAERQYDLNR 340
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 108
Score = 25.3 bits (55), Expect = 7.8
Identities = 7/56 (12%), Positives = 24/56 (42%)
Query: 328 KELAQREIDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRR 383
K++ E + + +++ + ++ ++ K + E+ L E+ ++R
Sbjct: 37 KDVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQR 92
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 26.4 bits (57), Expect = 7.9
Identities = 10/59 (16%), Positives = 24/59 (40%)
Query: 334 EIDRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQEEDLRRRQNDNSMFLV 392
E+ E ++ ++ E + DE L++K+ E ++ E+ ++ V
Sbjct: 185 EVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHEAVRRGLLYPV 243
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 25.6 bits (56), Expect = 8.6
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 336 DRERQKAEWEMKERQAEELKRRDEELMKKHAEEMQLRLAQQE 377
R + + E EEL R+ +EL K A + Q LAQQE
Sbjct: 92 KRRKASSRLENLGIPEEELLRQQQELFAK-ARQQQAELAQQE 132
>d2o6ia1 a.211.1.1 (A:1-453) Hypothetical protein EF1143
{Enterococcus faecalis [TaxId: 1351]}
Length = 453
Score = 26.3 bits (57), Expect = 9.2
Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 311 RWKQLHELYEHETEMLRKELAQREIDRERQKAEWEMKERQAEELKRRDEELMKK 364
+ + +L +LA+R + R+ K+ E+++ EL++K
Sbjct: 301 LSTYFTQWMDVPDSILG-DLAKRFLMRKPLKSATFTNEKESAATIAYLRELIEK 353
>d1y5ib1 d.58.1.5 (B:1-509) Respiratory nitrate reductase 1 beta
chain {Escherichia coli [TaxId: 562]}
Length = 509
Score = 26.2 bits (57), Expect = 9.6
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 9 EQEVNQLYQAR-LRSYTGHFKIP----EIEDMPFMSLGGRGGGRGGGVGG 53
E + ++Y+ + +Y F +P E+ F G G G G G
Sbjct: 437 EAQAQEMYRYLAIANYEDRFVVPSSHRELAREAFPEKNGCGFTFGDGCHG 486
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.137 0.403
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,986,518
Number of extensions: 102382
Number of successful extensions: 473
Number of sequences better than 10.0: 1
Number of HSP's gapped: 389
Number of HSP's successfully gapped: 142
Length of query: 503
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 414
Effective length of database: 1,185,626
Effective search space: 490849164
Effective search space used: 490849164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.6 bits)