BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy930
         (89 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MGA|A Chain A, 2.4 Angstrom Crystal Structure Of Ferric Enterobactin
           Esterase (Fes) From Salmonella Typhimurium
 pdb|3MGA|B Chain B, 2.4 Angstrom Crystal Structure Of Ferric Enterobactin
           Esterase (Fes) From Salmonella Typhimurium
          Length = 407

 Score = 25.4 bits (54), Expect = 7.9,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 36  GNAVTALTFAQYILQPIWPHCDPPYS 61
           G+AV+AL      LQP W   + PYS
Sbjct: 146 GHAVSALEXPDAPLQPGWDRPETPYS 171


>pdb|1QQW|A Chain A, Crystal Structure Of Human Erythrocyte Catalase
 pdb|1QQW|B Chain B, Crystal Structure Of Human Erythrocyte Catalase
 pdb|1QQW|C Chain C, Crystal Structure Of Human Erythrocyte Catalase
 pdb|1QQW|D Chain D, Crystal Structure Of Human Erythrocyte Catalase
 pdb|1F4J|A Chain A, Structure Of Tetragonal Crystals Of Human Erythrocyte
           Catalase
 pdb|1F4J|B Chain B, Structure Of Tetragonal Crystals Of Human Erythrocyte
           Catalase
 pdb|1F4J|C Chain C, Structure Of Tetragonal Crystals Of Human Erythrocyte
           Catalase
 pdb|1F4J|D Chain D, Structure Of Tetragonal Crystals Of Human Erythrocyte
           Catalase
          Length = 527

 Score = 25.4 bits (54), Expect = 8.6,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 8   DYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPP 59
           DY  I + F  +    Y     ++ + T N      F  + L  +WPH D P
Sbjct: 259 DYG-IRDLFNAIATGKYPSWTFYIQVMTFNQAETFPFNPFDLTKVWPHKDYP 309


>pdb|1DGH|A Chain A, Human Erythrocyte Catalase 3-Amino-1,2,4-Triazole Complex
 pdb|1DGH|C Chain C, Human Erythrocyte Catalase 3-Amino-1,2,4-Triazole Complex
 pdb|1DGB|A Chain A, Human Erythrocyte Catalase
 pdb|1DGB|B Chain B, Human Erythrocyte Catalase
 pdb|1DGB|C Chain C, Human Erythrocyte Catalase
 pdb|1DGB|D Chain D, Human Erythrocyte Catalase
          Length = 498

 Score = 25.4 bits (54), Expect = 9.4,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 8   DYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPP 59
           DY  I + F  +    Y     ++ + T N      F  + L  +WPH D P
Sbjct: 256 DYG-IRDLFNAIATGKYPSWTFYIQVMTFNQAETFPFNPFDLTKVWPHKDYP 306


>pdb|1DGG|A Chain A, Human Erythrocyte Catalse Cyanide Complex
 pdb|1DGG|B Chain B, Human Erythrocyte Catalse Cyanide Complex
 pdb|1DGG|C Chain C, Human Erythrocyte Catalse Cyanide Complex
 pdb|1DGG|D Chain D, Human Erythrocyte Catalse Cyanide Complex
 pdb|1DGF|A Chain A, Human Erythrocyte Catalase
 pdb|1DGF|B Chain B, Human Erythrocyte Catalase
 pdb|1DGF|C Chain C, Human Erythrocyte Catalase
 pdb|1DGF|D Chain D, Human Erythrocyte Catalase
          Length = 497

 Score = 25.4 bits (54), Expect = 9.5,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 8   DYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPP 59
           DY  I + F  +    Y     ++ + T N      F  + L  +WPH D P
Sbjct: 255 DYG-IRDLFNAIATGKYPSWTFYIQVMTFNQAETFPFNPFDLTKVWPHKDYP 305


>pdb|1DGH|B Chain B, Human Erythrocyte Catalase 3-Amino-1,2,4-Triazole Complex
 pdb|1DGH|D Chain D, Human Erythrocyte Catalase 3-Amino-1,2,4-Triazole Complex
          Length = 498

 Score = 25.4 bits (54), Expect = 9.5,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 8   DYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPP 59
           DY  I + F  +    Y     ++ + T N      F  + L  +WPH D P
Sbjct: 256 DYG-IRDLFNAIATGKYPSWTFYIQVMTFNQAETFPFNPFDLTKVWPHKDYP 306


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.141    0.479 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,824,039
Number of Sequences: 62578
Number of extensions: 90584
Number of successful extensions: 202
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 197
Number of HSP's gapped (non-prelim): 10
length of query: 89
length of database: 14,973,337
effective HSP length: 56
effective length of query: 33
effective length of database: 11,468,969
effective search space: 378475977
effective search space used: 378475977
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)