Query psy930
Match_columns 89
No_of_seqs 174 out of 1077
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 23:54:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy930.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/930hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1287|consensus 99.7 4.6E-17 9.9E-22 112.8 9.2 88 1-88 73-160 (479)
2 TIGR00911 2A0308 L-type amino 99.5 6.4E-14 1.4E-18 98.0 10.2 88 1-88 103-190 (501)
3 PRK10655 potE putrescine trans 99.5 2.3E-13 5E-18 93.7 9.6 85 1-88 64-148 (438)
4 TIGR00908 2A0305 ethanolamine 99.5 2.5E-13 5.4E-18 93.6 9.3 81 1-88 66-146 (442)
5 PF13520 AA_permease_2: Amino 99.5 2.3E-13 5.1E-18 93.0 9.0 87 1-88 57-143 (426)
6 PRK10644 arginine:agmatin anti 99.5 8.5E-13 1.8E-17 91.2 9.6 85 1-88 66-150 (445)
7 PRK10435 cadB lysine/cadaverin 99.5 9.1E-13 2E-17 90.9 9.7 84 1-88 63-146 (435)
8 PRK10249 phenylalanine transpo 99.4 1.1E-12 2.4E-17 91.1 9.7 81 1-88 80-160 (458)
9 PRK10746 putative transport pr 99.4 1E-12 2.2E-17 91.4 9.5 81 1-88 69-149 (461)
10 TIGR00905 2A0302 transporter, 99.4 9.4E-13 2E-17 91.7 8.8 86 1-88 67-154 (473)
11 PRK10197 gamma-aminobutyrate t 99.4 1.7E-12 3.6E-17 90.0 9.5 81 1-88 51-131 (446)
12 PRK11021 putative transporter; 99.4 1.8E-12 3.8E-17 88.8 9.1 83 1-88 58-140 (410)
13 PRK11357 frlA putative fructos 99.4 1.9E-12 4E-17 89.4 9.1 84 1-88 69-152 (445)
14 COG1113 AnsP Gamma-aminobutyra 99.4 3E-12 6.4E-17 88.4 9.3 78 3-87 74-151 (462)
15 TIGR01773 GABAperm gamma-amino 99.4 3.5E-12 7.5E-17 88.3 9.8 81 1-88 71-151 (452)
16 PRK10238 aromatic amino acid t 99.4 3.3E-12 7.2E-17 88.7 9.4 81 1-88 71-151 (456)
17 PRK11387 S-methylmethionine tr 99.4 3.3E-12 7.1E-17 88.9 9.1 80 1-87 74-153 (471)
18 TIGR03810 arg_ornith_anti argi 99.4 4.5E-12 9.8E-17 88.2 9.6 86 1-88 61-148 (468)
19 PRK15049 L-asparagine permease 99.4 4.6E-12 9.9E-17 89.0 9.5 83 1-88 87-169 (499)
20 TIGR03813 put_Glu_GABA_T putat 99.4 6.8E-12 1.5E-16 87.4 8.9 87 1-88 57-148 (474)
21 TIGR00930 2a30 K-Cl cotranspor 99.3 4.8E-12 1E-16 94.3 8.2 85 2-88 139-228 (953)
22 PRK10580 proY putative proline 99.3 1.1E-11 2.4E-16 86.0 9.4 80 1-87 68-147 (457)
23 TIGR03428 ureacarb_perm permea 99.3 1E-11 2.2E-16 86.5 8.8 87 1-88 73-169 (475)
24 TIGR00906 2A0303 cationic amin 99.3 9.8E-12 2.1E-16 88.4 8.4 87 1-88 88-186 (557)
25 TIGR00909 2A0306 amino acid tr 99.3 1.4E-11 3.1E-16 84.5 7.8 86 1-88 62-158 (429)
26 COG0531 PotE Amino acid transp 99.3 1.9E-11 4.2E-16 84.0 8.4 86 1-88 71-159 (466)
27 TIGR00910 2A0307_GadC glutamat 99.3 1.7E-11 3.7E-16 86.2 8.1 85 2-88 61-148 (507)
28 PRK10836 lysine transporter; P 99.3 6.5E-11 1.4E-15 82.9 9.6 81 1-88 75-155 (489)
29 TIGR00907 2A0304 amino acid pe 99.2 4.4E-11 9.4E-16 83.4 8.3 87 1-88 73-168 (482)
30 PRK11049 D-alanine/D-serine/gl 99.2 1.6E-10 3.4E-15 80.6 9.5 80 2-88 80-159 (469)
31 TIGR00913 2A0310 amino acid pe 99.2 2.2E-10 4.8E-15 79.7 9.7 81 1-88 62-143 (478)
32 PRK15238 inner membrane transp 99.1 1.2E-09 2.6E-14 76.6 9.7 86 1-88 64-160 (496)
33 PF00324 AA_permease: Amino ac 99.0 2E-10 4.4E-15 80.0 2.7 86 1-88 55-142 (478)
34 TIGR00837 araaP aromatic amino 99.0 3.2E-09 6.8E-14 72.1 7.4 86 1-88 54-139 (381)
35 COG0833 LysP Amino acid transp 98.9 2.9E-08 6.2E-13 70.2 8.9 81 1-87 104-184 (541)
36 KOG1286|consensus 98.7 8.1E-08 1.7E-12 68.6 6.7 50 1-51 90-140 (554)
37 PHA02764 hypothetical protein; 98.5 1.1E-07 2.4E-12 63.8 2.7 38 1-39 72-109 (399)
38 TIGR00912 2A0309 spore germina 98.4 4.2E-06 9.1E-11 56.5 9.0 80 2-88 61-140 (359)
39 KOG1289|consensus 98.2 6.9E-06 1.5E-10 58.4 6.1 87 1-88 109-202 (550)
40 TIGR00796 livcs branched-chain 97.9 0.00012 2.6E-09 50.5 8.6 83 1-87 49-135 (378)
41 TIGR00814 stp serine transport 97.8 0.00029 6.2E-09 48.9 8.4 82 5-88 65-147 (397)
42 KOG2083|consensus 96.6 0.0026 5.7E-08 46.2 3.4 80 4-87 93-172 (643)
43 PF03845 Spore_permease: Spore 94.8 0.73 1.6E-05 30.8 9.5 76 6-87 62-137 (320)
44 PF03222 Trp_Tyr_perm: Tryptop 94.3 0.34 7.4E-06 33.7 7.0 84 2-87 61-144 (394)
45 PRK13629 threonine/serine tran 94.1 0.7 1.5E-05 32.9 8.3 84 3-87 79-162 (443)
46 KOG1288|consensus 91.4 0.13 2.7E-06 38.7 1.7 83 4-88 130-222 (945)
47 PRK15132 tyrosine transporter 90.4 1.9 4.2E-05 30.3 6.7 45 3-48 62-106 (403)
48 COG0814 SdaC Amino acid permea 88.6 4.3 9.4E-05 28.6 7.4 84 2-87 67-152 (415)
49 KOG2082|consensus 88.3 0.25 5.4E-06 37.6 1.2 83 4-87 177-271 (1075)
50 TIGR00835 agcS amino acid carr 86.4 8.5 0.00019 27.4 7.9 75 6-88 116-191 (425)
51 PRK10483 tryptophan permease; 82.5 13 0.00028 26.4 7.3 83 2-87 69-151 (414)
52 PRK09664 tryptophan permease T 81.0 17 0.00038 25.8 7.7 84 2-87 67-150 (415)
53 PF01235 Na_Ala_symp: Sodium:a 79.6 20 0.00043 25.6 8.3 77 5-88 87-164 (416)
54 COG1115 AlsT Na+/alanine sympo 75.4 28 0.00061 25.2 8.1 77 5-88 131-208 (452)
55 COG1114 BrnQ Branched-chain am 57.8 69 0.0015 23.1 8.1 45 9-55 266-310 (431)
56 PF13317 DUF4088: Protein of u 54.1 7.3 0.00016 25.0 1.0 15 5-19 50-64 (229)
57 PF11286 DUF3087: Protein of u 51.8 57 0.0012 20.4 5.5 35 34-69 23-57 (165)
58 PF05525 Branch_AA_trans: Bran 42.8 1.3E+02 0.0027 21.7 8.6 43 10-54 265-307 (427)
59 COG5478 Predicted small integr 42.0 46 0.00099 20.2 3.1 23 10-32 11-33 (141)
60 PF03911 Sec61_beta: Sec61beta 37.2 40 0.00086 15.8 1.9 22 60-81 20-41 (41)
61 KOG3457|consensus 32.6 38 0.00081 18.8 1.6 23 59-81 59-81 (88)
62 TIGR00796 livcs branched-chain 30.6 2E+02 0.0042 20.3 9.0 44 10-55 259-302 (378)
63 PRK15433 branched-chain amino 27.2 2.5E+02 0.0054 20.4 8.7 42 9-51 268-309 (439)
64 KOG3659|consensus 25.8 1.1E+02 0.0023 23.3 3.3 23 67-89 258-280 (629)
65 PF04120 Iron_permease: Low af 25.1 1.6E+02 0.0035 17.6 3.8 23 10-32 6-28 (132)
66 PF04547 Anoctamin: Calcium-ac 21.6 3.1E+02 0.0066 19.5 8.3 28 12-39 1-28 (452)
67 KOG1304|consensus 21.3 2.8E+02 0.0061 20.2 4.7 37 13-50 131-167 (449)
No 1
>KOG1287|consensus
Probab=99.72 E-value=4.6e-17 Score=112.79 Aligned_cols=88 Identities=57% Similarity=1.021 Sum_probs=82.1
Q ss_pred CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q psy930 1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCY 80 (89)
Q Consensus 1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~ 80 (89)
++|++||+|.|+.++||+.+||+.+|..++...+.+.|..++.|++|+.++++|.+..|+...++++.+++++++.+|+.
T Consensus 73 ~ipksGgd~ayi~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~c~~p~~~~~lla~~~l~~lt~~n~~ 152 (479)
T KOG1287|consen 73 SIPKSGGDYAYISEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPLCDVPRVASKLLAAALLVLLTLINSF 152 (479)
T ss_pred cccCCCcchhhHHHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHHHhhh
Confidence 58999999999999999999999999999888898889999999999777788988888899999999999999999999
Q ss_pred ccchhhcc
Q psy930 81 NKYHLTCS 88 (89)
Q Consensus 81 gvk~~~~~ 88 (89)
++|.++|+
T Consensus 153 ~V~~a~~v 160 (479)
T KOG1287|consen 153 SVKWATRV 160 (479)
T ss_pred hhhHHHHH
Confidence 99998874
No 2
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.55 E-value=6.4e-14 Score=97.98 Aligned_cols=88 Identities=51% Similarity=0.904 Sum_probs=73.2
Q ss_pred CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q psy930 1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCY 80 (89)
Q Consensus 1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~ 80 (89)
++|++||.|+|+++.+||..||+.+|..+....+...+..+..+++|+.+.++|+...+.+...+++++++++++.+|++
T Consensus 103 ~~P~sGG~y~~~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~i~~~~i~~~~~ln~~ 182 (501)
T TIGR00911 103 TIPKSGGEYNYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEWAIRLVAVLCVLLLTLVNCL 182 (501)
T ss_pred hcCCCCchhhhHHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 47999999999999999999999999987655566788888999999765445665445555677888889999999999
Q ss_pred ccchhhcc
Q psy930 81 NKYHLTCS 88 (89)
Q Consensus 81 gvk~~~~~ 88 (89)
|+|.++|+
T Consensus 183 Gvk~~~~~ 190 (501)
T TIGR00911 183 SVKWATRV 190 (501)
T ss_pred hhHHHHHH
Confidence 99998874
No 3
>PRK10655 potE putrescine transporter; Provisional
Probab=99.50 E-value=2.3e-13 Score=93.72 Aligned_cols=85 Identities=19% Similarity=0.148 Sum_probs=67.6
Q ss_pred CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q psy930 1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCY 80 (89)
Q Consensus 1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~ 80 (89)
++|++||.|.|+++.+||..||+++|.+|+.+. ......+.++.+|+.. ++|. ..++....++.++++++++.+|++
T Consensus 64 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~-~~~~~~a~~~~~y~~~-~~~~-~~~~~~~~~~~~~~l~~~~~ln~~ 140 (438)
T PRK10655 64 FSRKSGGMGGYAEYAFGKSGNFMANYTYGVSLL-IANVAIAISAVGYGTE-LFGA-TLSPVQICLATIGVLWLCTVANFG 140 (438)
T ss_pred hCCCCCchHHHHHHHcCcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-hccc-ccchHHHHHHHHHHHHHHHHHHHh
Confidence 479999999999999999999999999988763 3444456777889886 4563 223455566777888999999999
Q ss_pred ccchhhcc
Q psy930 81 NKYHLTCS 88 (89)
Q Consensus 81 gvk~~~~~ 88 (89)
|+|.++|+
T Consensus 141 g~~~~~~i 148 (438)
T PRK10655 141 GARITGQI 148 (438)
T ss_pred CHHHHHHH
Confidence 99998874
No 4
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.49 E-value=2.5e-13 Score=93.63 Aligned_cols=81 Identities=26% Similarity=0.343 Sum_probs=68.7
Q ss_pred CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q psy930 1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCY 80 (89)
Q Consensus 1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~ 80 (89)
++|++||.|.|+++.+||..||+++|.+++.+ ....+.++..+++|+.. ++|+. ..+..+.+++++++.+|++
T Consensus 66 ~~P~~Gg~y~~~~~~~G~~~gf~~gw~~~~~~-~~~~~~~a~~~~~~l~~-~~p~~-----~~~~~~~~~~~~~~~ln~~ 138 (442)
T TIGR00908 66 MIPTAGGGYGFARRAFGPWGGFLAGTAILIEF-AFAPPAIACFIGAYCES-LFPVG-----PGWLAALVFYIVFIGINIL 138 (442)
T ss_pred HcCCCCCHHHHHHHHhCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HhccC-----chhHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999876 56778889999999986 55653 1345677778888999999
Q ss_pred ccchhhcc
Q psy930 81 NKYHLTCS 88 (89)
Q Consensus 81 gvk~~~~~ 88 (89)
|+|.++|+
T Consensus 139 g~~~~~~i 146 (442)
T TIGR00908 139 GVGEAAKL 146 (442)
T ss_pred HHHHHHhH
Confidence 99998874
No 5
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.49 E-value=2.3e-13 Score=93.00 Aligned_cols=87 Identities=26% Similarity=0.403 Sum_probs=71.8
Q ss_pred CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q psy930 1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCY 80 (89)
Q Consensus 1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~ 80 (89)
++|++||.|.|+++.+||++||+.+|.+++.+ ....+..+..+++|+...+.|+....++....++++++++.+.+|++
T Consensus 57 ~~p~~GG~y~~~~~~~g~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 135 (426)
T PF13520_consen 57 AYPSAGGIYVWVSRAFGPFWGFIVGWLYWVAY-ILSLASVASSFASYLLSLFGPDLNPSPWPQFLIAIILILLFTLLNLL 135 (426)
T ss_dssp TTTSSTTHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTTTTTGGGTCSHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCcCeeeehhhhcccccchhcccceeEEEe-eccccccccchhhhhhhccccccccccchheeeeecccccceEeeec
Confidence 47999999999999999999999999999877 55677778889999987543443334556778899999999999999
Q ss_pred ccchhhcc
Q psy930 81 NKYHLTCS 88 (89)
Q Consensus 81 gvk~~~~~ 88 (89)
|+|.++|+
T Consensus 136 g~~~~~~~ 143 (426)
T PF13520_consen 136 GIKLSGKI 143 (426)
T ss_dssp THHHHHHH
T ss_pred hhhhhhhh
Confidence 99998874
No 6
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.45 E-value=8.5e-13 Score=91.19 Aligned_cols=85 Identities=19% Similarity=0.325 Sum_probs=65.5
Q ss_pred CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q psy930 1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCY 80 (89)
Q Consensus 1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~ 80 (89)
++|++||+|.|+++.+||..||+++|.+|+.+.. .....+....+|... ++|... +++...+++++++++++.+|++
T Consensus 66 ~~P~aGG~y~~~~~~~g~~~gf~~gw~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~ln~~ 142 (445)
T PRK10644 66 LDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWI-GNIAMVVIGVGYLSY-FFPILK-DPLVLTITCVVVLWIFVLLNIV 142 (445)
T ss_pred hCCCCCChhHHHHHHcCchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HhcccC-CcHHHHHHHHHHHHHHHHHHHh
Confidence 4899999999999999999999999999976533 344445556678775 456432 2344456677888899999999
Q ss_pred ccchhhcc
Q psy930 81 NKYHLTCS 88 (89)
Q Consensus 81 gvk~~~~~ 88 (89)
|+|..+|+
T Consensus 143 gvk~~~~i 150 (445)
T PRK10644 143 GPKMITRV 150 (445)
T ss_pred chHHHHHH
Confidence 99998874
No 7
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.45 E-value=9.1e-13 Score=90.93 Aligned_cols=84 Identities=19% Similarity=0.252 Sum_probs=65.7
Q ss_pred CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q psy930 1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCY 80 (89)
Q Consensus 1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~ 80 (89)
++|++||.|+|++| +||.+||+++|.+|.... ......+.+..+|+.. ++|... ++....+++++++++++.+|++
T Consensus 63 ~~P~~GG~y~y~~~-~g~~~gf~~gw~~~~~~~-~~~~~~~~~~~~y~~~-~~p~~~-~~~~~~~~~~~i~~~~~~ln~~ 138 (435)
T PRK10435 63 KNPQQGGPIAYAGE-ISPAFGFQTGVLYYHANW-IGNLAIGITAVSYLST-FFPVLN-DPIPAGIACIAIVWVFTFVNML 138 (435)
T ss_pred hCCCCCChhHHHHH-HCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HccccC-ChHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999 899999999999987542 3344556777789886 567543 2344556677888899999999
Q ss_pred ccchhhcc
Q psy930 81 NKYHLTCS 88 (89)
Q Consensus 81 gvk~~~~~ 88 (89)
|+|..+|+
T Consensus 139 gvk~~~~i 146 (435)
T PRK10435 139 GGTWVSRL 146 (435)
T ss_pred hHHHHHHH
Confidence 99998764
No 8
>PRK10249 phenylalanine transporter; Provisional
Probab=99.44 E-value=1.1e-12 Score=91.13 Aligned_cols=81 Identities=19% Similarity=0.246 Sum_probs=66.6
Q ss_pred CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q psy930 1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCY 80 (89)
Q Consensus 1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~ 80 (89)
++|++||.|.|+++.+||.+||++||.+|+.+ ....+.+..+.+.|+.. ++|+. +...++.+++++++.+|++
T Consensus 80 ~~P~~Gg~~~y~~~~~g~~~gf~~gw~~~~~~-~~~~~~~~~a~~~~~~~-~~~~~-----~~~~~~~~~~~l~~~lN~~ 152 (458)
T PRK10249 80 EEPVSGSFAHFAYKYWGPFAGFLSGWNYWVMF-VLVGMAELTAAGIYMQY-WFPDV-----PTWIWAAAFFIIINAVNLV 152 (458)
T ss_pred hCCCCCCHHHHHHHHhChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-cCCcC-----cHHHHHHHHHHHHHHHHHh
Confidence 47999999999999999999999999999877 34566777788888886 55642 2345577788889999999
Q ss_pred ccchhhcc
Q psy930 81 NKYHLTCS 88 (89)
Q Consensus 81 gvk~~~~~ 88 (89)
|+|.++|+
T Consensus 153 gv~~~~~i 160 (458)
T PRK10249 153 NVRLYGET 160 (458)
T ss_pred cchhhhhH
Confidence 99998874
No 9
>PRK10746 putative transport protein YifK; Provisional
Probab=99.44 E-value=1e-12 Score=91.44 Aligned_cols=81 Identities=15% Similarity=0.201 Sum_probs=66.2
Q ss_pred CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q psy930 1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCY 80 (89)
Q Consensus 1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~ 80 (89)
++|++||.|+|++|.+||..||.+||.+|+.+ ....+.+..+.+.|+.. ++|+. + .+....+++++++.+|++
T Consensus 69 ~~P~sGg~~~y~~~~~g~~~Gf~~gw~~~~~~-~~~~~~~~~a~~~~l~~-~~p~~--~---~~~~~~~~~~~~~~lN~~ 141 (461)
T PRK10746 69 LEPVTGSFAVYAHRYMSPFFGYLTAWSYWFMW-MAVGISEITAIGVYVQF-WFPEM--A---QWIPALIAVALVALANLA 141 (461)
T ss_pred hcCCCCCHHHHHHHHhCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-ccCCC--c---hHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999887 44567777888999886 56753 2 345566677888999999
Q ss_pred ccchhhcc
Q psy930 81 NKYHLTCS 88 (89)
Q Consensus 81 gvk~~~~~ 88 (89)
|+|..+++
T Consensus 142 gv~~~~~~ 149 (461)
T PRK10746 142 AVRLYGEI 149 (461)
T ss_pred hHHHHHHH
Confidence 99998763
No 10
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.43 E-value=9.4e-13 Score=91.65 Aligned_cols=86 Identities=23% Similarity=0.281 Sum_probs=67.3
Q ss_pred CCCC-CcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCC-CchHHHHHHHHHHHHHHHHHH
Q psy930 1 MIPK-SGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCD-PPYSAVRLLAAVITCLLTAIN 78 (89)
Q Consensus 1 ~~P~-~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~iN 78 (89)
++|+ +||.|+|+++.+||..||+.||.+|+.+ .......+..+.+|+.. ++|... .++....+.+++++++++.+|
T Consensus 67 ~~P~~sGG~y~y~~~~~G~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~l~~-~~p~~~~~~~~~~~~~~~~~~~~~~~ln 144 (473)
T TIGR00905 67 KKPELDGGIYAYAREGFGPYIGFMSGWGYWLSA-WIGNVAYAVLLFSALGY-FFPLFGSGNPVPSILGASVLLWVFTFLV 144 (473)
T ss_pred hCCCCCCChhhhHHhHcccccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HhhhhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 4799 9999999999999999999999998765 34455566777778876 456332 123455667788888999999
Q ss_pred Hhccchhhcc
Q psy930 79 CYNKYHLTCS 88 (89)
Q Consensus 79 ~~gvk~~~~~ 88 (89)
++|+|.++|+
T Consensus 145 ~~Gi~~~~~i 154 (473)
T TIGR00905 145 LRGVRQAAFI 154 (473)
T ss_pred HhCHHHHHHH
Confidence 9999998874
No 11
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.42 E-value=1.7e-12 Score=89.97 Aligned_cols=81 Identities=20% Similarity=0.202 Sum_probs=66.0
Q ss_pred CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q psy930 1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCY 80 (89)
Q Consensus 1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~ 80 (89)
++|++||.|.|++|.+||..||+.+|.+|+.+ ....+.++.+.+.++.. +.|+ .....++.+++++++.+|++
T Consensus 51 ~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~l~~~~~lN~~ 123 (446)
T PRK10197 51 ATPDTGSFSTYADKAIGRWAGYTIGWLYWWFW-VLVIPLEANIAAMILHS-WVPG-----IPIWLFSLVITLALTGSNLL 123 (446)
T ss_pred hCCCCCCHHHHHHHHcChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh-cccc-----CcHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999876 45666677777777765 4443 23457788889999999999
Q ss_pred ccchhhcc
Q psy930 81 NKYHLTCS 88 (89)
Q Consensus 81 gvk~~~~~ 88 (89)
|+|..+++
T Consensus 124 gv~~~~~i 131 (446)
T PRK10197 124 SVKNYGEF 131 (446)
T ss_pred hhHHHhhh
Confidence 99998764
No 12
>PRK11021 putative transporter; Provisional
Probab=99.41 E-value=1.8e-12 Score=88.79 Aligned_cols=83 Identities=22% Similarity=0.268 Sum_probs=62.9
Q ss_pred CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q psy930 1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCY 80 (89)
Q Consensus 1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~ 80 (89)
++|++||.|.|+++.+||..||+++|.++..+ ....+.......+|+.. .+|.. ......++.+++++++.+|++
T Consensus 58 ~~P~aGG~y~y~~~~~G~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~ln~~ 132 (410)
T PRK11021 58 HFPHAGGPAHFVGMAFGPRLGRVTGWLFLSVI-PVGLPAALQIAAGFGQA-LFGWS---SWQLLLAELLTLALLWLLNLR 132 (410)
T ss_pred hCCCCCCHHHhHHHHhCchhHHHHHHHHHHHH-HhhHHHHHHHHHHHHHH-HcCCC---CchHHHHHHHHHHHHHHHHHh
Confidence 47999999999999999999999999998754 33334344445567765 45532 233456677788889999999
Q ss_pred ccchhhcc
Q psy930 81 NKYHLTCS 88 (89)
Q Consensus 81 gvk~~~~~ 88 (89)
|+|.++|+
T Consensus 133 Gv~~~~~~ 140 (410)
T PRK11021 133 GASSSANL 140 (410)
T ss_pred hHHHHHHH
Confidence 99999874
No 13
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.41 E-value=1.9e-12 Score=89.45 Aligned_cols=84 Identities=18% Similarity=0.212 Sum_probs=67.3
Q ss_pred CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q psy930 1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCY 80 (89)
Q Consensus 1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~ 80 (89)
++|++||+|.|+++.+||..||+.+|..+....+...+.++..+++|+.. ++|. ++.....++.+++.+++.+|++
T Consensus 69 ~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~-~~~~---~~~~~~~~~~~~~~~~~~ln~~ 144 (445)
T PRK11357 69 AYPENGADYVYLKNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGF-LTPI---DPLLGKFIAAGLIIAFMLLHLR 144 (445)
T ss_pred hcCCCCCceeeHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCC---chHHHHHHHHHHHHHHHHHHHh
Confidence 47999999999999999999999999855433356678889999999876 4453 2234566777788889999999
Q ss_pred ccchhhcc
Q psy930 81 NKYHLTCS 88 (89)
Q Consensus 81 gvk~~~~~ 88 (89)
|+|.++|+
T Consensus 145 gv~~~~~v 152 (445)
T PRK11357 145 SVEGGAAF 152 (445)
T ss_pred hhhHHHHH
Confidence 99988874
No 14
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.40 E-value=3e-12 Score=88.42 Aligned_cols=78 Identities=22% Similarity=0.295 Sum_probs=69.8
Q ss_pred CCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHhcc
Q psy930 3 PKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCYNK 82 (89)
Q Consensus 3 P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~gv 82 (89)
|++|+..+|+++.+||++||++||.||+.+ .....++..+.+.|+.. |+|+. +.++.+++.+.++..+|+.++
T Consensus 74 p~~gSF~~~a~~~lG~~Agf~tgW~YW~~w-v~v~~ae~tAi~~y~~~-WfP~v-----P~Wv~al~~~~l~~~~NL~sV 146 (462)
T COG1113 74 PVSGSFSDYARKYLGPWAGFLTGWTYWFFW-VLVGIAELTAIGIYLQF-WFPDV-----PQWVFALAAVVLLLAVNLISV 146 (462)
T ss_pred CCCCcHHHHHHHHhcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hcCCC-----cHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999988 55677899999999997 78874 477888999999999999999
Q ss_pred chhhc
Q psy930 83 YHLTC 87 (89)
Q Consensus 83 k~~~~ 87 (89)
|..+.
T Consensus 147 k~FGE 151 (462)
T COG1113 147 KVFGE 151 (462)
T ss_pred HHHHH
Confidence 98764
No 15
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.40 E-value=3.5e-12 Score=88.26 Aligned_cols=81 Identities=20% Similarity=0.291 Sum_probs=68.0
Q ss_pred CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q psy930 1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCY 80 (89)
Q Consensus 1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~ 80 (89)
++|++||.|.|+++.+||..||+++|.+|+.+ ....+.++.++++|+.. ++|+. +.+.++++++++++.+|++
T Consensus 71 ~~P~~Gg~~~~~~~~~g~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~l~~-~~~~~-----~~~~~~~~~~~~~~~~n~~ 143 (452)
T TIGR01773 71 ANPDTGSFSTYADDAIGRWAGFTIGWLYWWFW-VLVIPLEAIAAAGILQY-WFPDI-----PLWLFSLILTIVLTLTNLY 143 (452)
T ss_pred hcCCCCCHHHHHHHHhCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hcCcC-----cHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999876 45677888889989886 55642 2456778888889999999
Q ss_pred ccchhhcc
Q psy930 81 NKYHLTCS 88 (89)
Q Consensus 81 gvk~~~~~ 88 (89)
|+|..+|+
T Consensus 144 gv~~~~~~ 151 (452)
T TIGR01773 144 SVKSYGEF 151 (452)
T ss_pred hcchhhHH
Confidence 99988764
No 16
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.39 E-value=3.3e-12 Score=88.68 Aligned_cols=81 Identities=20% Similarity=0.235 Sum_probs=66.4
Q ss_pred CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q psy930 1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCY 80 (89)
Q Consensus 1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~ 80 (89)
++|++||.|+|+++.+||..||++||.+++.+ ....+.+..++++|+.. ++|+. + .+....+++++++.+|++
T Consensus 71 ~~P~aGg~y~~~~~~~g~~~gf~~Gw~~~~~~-~~~~~~~~~~~~~~~~~-~~p~~--~---~~~~~~i~~~~~~~lN~~ 143 (456)
T PRK10238 71 EEPVAGSFSHFAYKYWGSFAGFASGWNYWVLY-VLVAMAELTAVGKYIQF-WYPEI--P---TWVSAAVFFVVINAINLT 143 (456)
T ss_pred hcCCCCCHHHHHHHHcCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hcCcC--c---HHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999987 45677788889999875 55642 2 334566667789999999
Q ss_pred ccchhhcc
Q psy930 81 NKYHLTCS 88 (89)
Q Consensus 81 gvk~~~~~ 88 (89)
|+|..+|+
T Consensus 144 gv~~~~~~ 151 (456)
T PRK10238 144 NVKVFGEM 151 (456)
T ss_pred hHHHHHHH
Confidence 99988763
No 17
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.39 E-value=3.3e-12 Score=88.93 Aligned_cols=80 Identities=14% Similarity=0.284 Sum_probs=61.3
Q ss_pred CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q psy930 1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCY 80 (89)
Q Consensus 1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~ 80 (89)
++|++||.|.|+++.+||..||++||.+|+.+ ....+....+.+.|+.. ++|+. + .....++++++++.+|++
T Consensus 74 ~~P~aGG~y~y~~~~~g~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~~~~-~~p~~--~---~~~~~~~~~~~~~~in~~ 146 (471)
T PRK11387 74 AMPETGAFHVYAARYLGPATGYTVAWLYWLTW-TVALGSSLTAAGFCMQY-WFPQV--P---VWPWCLLFCALIFGLNVV 146 (471)
T ss_pred HcCCCCCHHHHHHHhcChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh-ccCcC--c---HHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999876 44556666666666654 45542 2 234445556778999999
Q ss_pred ccchhhc
Q psy930 81 NKYHLTC 87 (89)
Q Consensus 81 gvk~~~~ 87 (89)
|+|..+|
T Consensus 147 gvk~~~~ 153 (471)
T PRK11387 147 STRFFAE 153 (471)
T ss_pred hHHHHHH
Confidence 9998875
No 18
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.38 E-value=4.5e-12 Score=88.17 Aligned_cols=86 Identities=19% Similarity=0.243 Sum_probs=64.6
Q ss_pred CCCCC-cchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCC-chHHHHHHHHHHHHHHHHHH
Q psy930 1 MIPKS-GGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDP-PYSAVRLLAAVITCLLTAIN 78 (89)
Q Consensus 1 ~~P~~-GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~iN 78 (89)
++|++ ||.|.|+++.|||..||+.+|.+|+.+.. ....++....+|+.. ++|.... ++.+....+..++++++.+|
T Consensus 61 ~~P~~gGG~y~y~~~~fG~~~gf~~gw~~w~~~~~-~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~ln 138 (468)
T TIGR03810 61 KKPELDGGVYSYAKAGFGPFMGFISAWGYWLSAWL-GNVAYATLLFSTLGY-FFPIFGGGNNPPSIIGASVLLWCVHFLV 138 (468)
T ss_pred hCCCCCCChhhhHHhHcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-hcccccCCCcHHHHHHHHHHHHHHHHHH
Confidence 47986 59999999999999999999999987633 344455566667765 4565422 22344566777888899999
Q ss_pred Hhccchhhcc
Q psy930 79 CYNKYHLTCS 88 (89)
Q Consensus 79 ~~gvk~~~~~ 88 (89)
++|+|.++|+
T Consensus 139 ~~Gv~~~~~i 148 (468)
T TIGR03810 139 LRGVEGAAFI 148 (468)
T ss_pred HhCHHHHHHH
Confidence 9999988773
No 19
>PRK15049 L-asparagine permease; Provisional
Probab=99.38 E-value=4.6e-12 Score=88.96 Aligned_cols=83 Identities=16% Similarity=0.173 Sum_probs=62.9
Q ss_pred CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q psy930 1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCY 80 (89)
Q Consensus 1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~ 80 (89)
++|++||.|+|+++.+||..||++||.+|+.+ ....+....+.+.|... + +.... .+.+.++.+++++++.+|++
T Consensus 87 ~~P~aGg~y~y~~~~~G~~~gf~~GW~~~l~~-~~~~~~~~~a~~~~~~~-~-~~~~~--~~~~~~~~~~~~l~~~iN~~ 161 (499)
T PRK15049 87 HRPSSGSFVSYAREFLGEKAAYVAGWMYFINW-AMTGIVDITAVALYMHY-W-GAFGG--VPQWVFALAALTIVGTMNMI 161 (499)
T ss_pred hCCCCCCHHHHHHHHhCcHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-h-ccCCC--CcHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999876 33445555566677653 3 32211 22445677788899999999
Q ss_pred ccchhhcc
Q psy930 81 NKYHLTCS 88 (89)
Q Consensus 81 gvk~~~~~ 88 (89)
|+|..+|+
T Consensus 162 gvk~~~~i 169 (499)
T PRK15049 162 GVKWFAEM 169 (499)
T ss_pred HHHHHHHH
Confidence 99998874
No 20
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=99.35 E-value=6.8e-12 Score=87.35 Aligned_cols=87 Identities=18% Similarity=0.117 Sum_probs=57.2
Q ss_pred CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHhhh--hCCCCCCchHHHHHHHHHHHHHHH
Q psy930 1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQ---YILQP--IWPHCDPPYSAVRLLAAVITCLLT 75 (89)
Q Consensus 1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~---y~~~~--~~~~~~~~~~~~~~~a~~~~~~~~ 75 (89)
++|++||.|.|++|.+||.+||+.+|.+|+.+ ....+......+. |.... +.|....+++....++++++++++
T Consensus 57 ~~P~~GG~y~~~~~a~G~~~gf~~gw~~w~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 135 (474)
T TIGR03813 57 AWPEKGGVFRWVGEAFGARWGFLAIFMLWAQV-TIWFPTVLTFGAVSLAFIGPEATVDESLAGNKLYVLVSVLFVYWLAT 135 (474)
T ss_pred cCCCCCCceeeHhhhcChhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCccccCcccccccHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999865 2222221111111 22210 112222233334456777788899
Q ss_pred HHHHhccchhhcc
Q psy930 76 AINCYNKYHLTCS 88 (89)
Q Consensus 76 ~iN~~gvk~~~~~ 88 (89)
.+|++|+|.++|+
T Consensus 136 ~in~~gv~~~~~i 148 (474)
T TIGR03813 136 FIALRGVAAFTKV 148 (474)
T ss_pred HHHhcChHHHHHH
Confidence 9999999998774
No 21
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.34 E-value=4.8e-12 Score=94.34 Aligned_cols=85 Identities=20% Similarity=0.256 Sum_probs=70.6
Q ss_pred CCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCC-----CchHHHHHHHHHHHHHHHH
Q psy930 2 IPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCD-----PPYSAVRLLAAVITCLLTA 76 (89)
Q Consensus 2 ~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~-----~~~~~~~~~a~~~~~~~~~ 76 (89)
+|++||.|.|++|.+||..||..||.+++.. ..+.+.++.++++|+... ++... .+.....+++.++++++++
T Consensus 139 ~p~aGG~Y~yisralGp~~Gf~iG~~~~la~-~va~A~~~~Gf~eyl~~l-f~~~~~~~~~~~~~~~~iia~i~l~ll~~ 216 (953)
T TIGR00930 139 VVKGGGAYYLISRSLGPEFGGSIGLIFAFAN-AVAVAMYVVGFAETVLDL-LRENGSKIMVDPINDIRIYGTVTVVVLLG 216 (953)
T ss_pred CCCccHHHHHHHHHhCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-hhhcccccccCccccchHHHHHHHHHHHH
Confidence 6999999999999999999999999999876 678899999999999874 44211 1112246788899999999
Q ss_pred HHHhccchhhcc
Q psy930 77 INCYNKYHLTCS 88 (89)
Q Consensus 77 iN~~gvk~~~~~ 88 (89)
+|++|+|.++|+
T Consensus 217 In~~Gvk~~ak~ 228 (953)
T TIGR00930 217 ISFAGMEWENKA 228 (953)
T ss_pred HHHhhHHHHHHH
Confidence 999999999874
No 22
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.34 E-value=1.1e-11 Score=85.99 Aligned_cols=80 Identities=19% Similarity=0.313 Sum_probs=64.0
Q ss_pred CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q psy930 1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCY 80 (89)
Q Consensus 1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~ 80 (89)
++|++||.|.|+++.+||..||++||.+++.+ ....+.++.+++.|... ++|+. + .....++++++++.+|++
T Consensus 68 ~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~--~---~~~~~~~~~~l~~~ln~~ 140 (457)
T PRK10580 68 HNPAASSFSRYAQENLGPLAGYITGWTYCFEI-LIVAIADVTAFGIYMGV-WFPTV--P---HWIWVLSVVLIICAVNLM 140 (457)
T ss_pred HcCCCCCHHHHHHHHcCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hCCCC--C---hHHHHHHHHHHHHHHHHc
Confidence 47999999999999999999999999999876 45566677888888876 55642 2 233455667788999999
Q ss_pred ccchhhc
Q psy930 81 NKYHLTC 87 (89)
Q Consensus 81 gvk~~~~ 87 (89)
|+|..+|
T Consensus 141 gv~~~~~ 147 (457)
T PRK10580 141 SVKVFGE 147 (457)
T ss_pred cchhHHH
Confidence 9998876
No 23
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.33 E-value=1e-11 Score=86.54 Aligned_cols=87 Identities=21% Similarity=0.296 Sum_probs=64.0
Q ss_pred CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhh-----C---CCCC-C-chHHHHHHHHHH
Q psy930 1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPI-----W---PHCD-P-PYSAVRLLAAVI 70 (89)
Q Consensus 1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~-----~---~~~~-~-~~~~~~~~a~~~ 70 (89)
++|++||.|+|+++.+||..||++||.+++.+ ....+..+.++..++...+ . |+.. + +.+...+++.++
T Consensus 73 ~~P~aGG~Y~~~~~~~g~~~gf~~gW~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (475)
T TIGR03428 73 RYPISGAIYQWSRRMGGEVIGWFAGWFMIIAQ-IVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVL 151 (475)
T ss_pred hCCCCCCHHHHHHHHcCccccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHH
Confidence 58999999999999999999999999999876 4455566666665654311 0 1111 0 113456777788
Q ss_pred HHHHHHHHHhccchhhcc
Q psy930 71 TCLLTAINCYNKYHLTCS 88 (89)
Q Consensus 71 ~~~~~~iN~~gvk~~~~~ 88 (89)
+++.+.+|++|+|..+|+
T Consensus 152 ~~~~~~in~~g~k~~~~i 169 (475)
T TIGR03428 152 LVLTTVINCIGVEWMSRV 169 (475)
T ss_pred HHHHHHHHHhhhhHHHHH
Confidence 889999999999998764
No 24
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.32 E-value=9.8e-12 Score=88.36 Aligned_cols=87 Identities=20% Similarity=0.290 Sum_probs=67.5
Q ss_pred CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhC---CCC-------CCch--HHHHHHHH
Q psy930 1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIW---PHC-------DPPY--SAVRLLAA 68 (89)
Q Consensus 1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~---~~~-------~~~~--~~~~~~a~ 68 (89)
++|++||.|.|+++.+||.+||+.||.+++.+ ....+.++.++++|+...+- +.. ..+. .....+++
T Consensus 88 ~~P~sGg~Y~y~~~~~G~~~gfi~GW~~~l~~-~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~ 166 (557)
T TIGR00906 88 RVPKAGSAYLYSYVTVGELWAFITGWNLILEY-VIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAV 166 (557)
T ss_pred hCCCCCcceeeHHHHhCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHH
Confidence 58999999999999999999999999999876 56778888899999875321 100 0011 12356677
Q ss_pred HHHHHHHHHHHhccchhhcc
Q psy930 69 VITCLLTAINCYNKYHLTCS 88 (89)
Q Consensus 69 ~~~~~~~~iN~~gvk~~~~~ 88 (89)
+++++++.+|++|+|.++|+
T Consensus 167 ~ii~l~~~ln~~Gik~s~~v 186 (557)
T TIGR00906 167 CLILLLAVLLSFGVKESAWV 186 (557)
T ss_pred HHHHHHHHHHHhchhHHHHH
Confidence 88888999999999999874
No 25
>TIGR00909 2A0306 amino acid transporter.
Probab=99.30 E-value=1.4e-11 Score=84.50 Aligned_cols=86 Identities=28% Similarity=0.383 Sum_probs=67.5
Q ss_pred CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCC--CCCchHH---------HHHHHHH
Q psy930 1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPH--CDPPYSA---------VRLLAAV 69 (89)
Q Consensus 1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~--~~~~~~~---------~~~~a~~ 69 (89)
++|++||.|+|+++.+||..||+.+|.+++.+ ....+..+..+++|+... ++. .+.|... ..+.+++
T Consensus 62 ~~p~~Gg~y~~~~~~~G~~~g~~~gw~~~~~~-~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 139 (429)
T TIGR00909 62 MLPVAGSPYTYAYEAMGELTAFIIGWSLWLEY-GVAVAAVAVGWGGYLQEF-LPGVGLDLPAVLTAKPGNGGVFNLPALL 139 (429)
T ss_pred hcCCCCcceeeHHHHhCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHccccCchhhhcCCcccccccHHHHH
Confidence 47999999999999999999999999999876 567888899999998763 342 1112111 1134677
Q ss_pred HHHHHHHHHHhccchhhcc
Q psy930 70 ITCLLTAINCYNKYHLTCS 88 (89)
Q Consensus 70 ~~~~~~~iN~~gvk~~~~~ 88 (89)
++++++.+|++|+|..+|+
T Consensus 140 ~~~~~~~l~~~g~~~~~~~ 158 (429)
T TIGR00909 140 IVLFLTYILYLGAKESGKV 158 (429)
T ss_pred HHHHHHHHHHhCcHHHHHH
Confidence 8889999999999998875
No 26
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.29 E-value=1.9e-11 Score=84.02 Aligned_cols=86 Identities=29% Similarity=0.408 Sum_probs=71.7
Q ss_pred CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCC---CCCchHHHHHHHHHHHHHHHHH
Q psy930 1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPH---CDPPYSAVRLLAAVITCLLTAI 77 (89)
Q Consensus 1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~i 77 (89)
.+|++||.|.|+++.+||..||+++|.+++.+ ....+..+..+++++.. ++|. ...+.+....++.+++++++.+
T Consensus 71 ~~p~~GG~y~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 148 (466)
T COG0531 71 AIPSAGGAYAYAKRALGPRLGFLAGWLYLLAY-VIALAAIAIGAASYLSY-LFPGPGLLSIGPLLIILIALALIALLTLL 148 (466)
T ss_pred cCCCCCCeeeehhhhcCcchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hcCcchhhcCCchHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999876 56778888888888876 4553 2222256778899999999999
Q ss_pred HHhccchhhcc
Q psy930 78 NCYNKYHLTCS 88 (89)
Q Consensus 78 N~~gvk~~~~~ 88 (89)
|++|+|.++|.
T Consensus 149 n~~G~~~~~~~ 159 (466)
T COG0531 149 NLRGIKASAKI 159 (466)
T ss_pred HHhhHHHHHHH
Confidence 99999998874
No 27
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=99.29 E-value=1.7e-11 Score=86.25 Aligned_cols=85 Identities=18% Similarity=0.169 Sum_probs=60.1
Q ss_pred CC-CCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHH--HHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHH
Q psy930 2 IP-KSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAV--TALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAIN 78 (89)
Q Consensus 2 ~P-~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~--~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN 78 (89)
+| ++||.|.|+++.+||++||+.+|.+|+.......+. ...+...|... .|+...+++...+..++++++++++|
T Consensus 61 ~p~~~GG~y~wv~~a~G~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~--~~~~~~~~~~~~i~~l~i~~~~t~~n 138 (507)
T TIGR00910 61 DGWEEGGIFAWVSNTLGERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILK--FPALNEDPIIKFIAALIIFWALAFSQ 138 (507)
T ss_pred cCCCCCCeeeehhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhccCcHHHHHHHHHHHHHHHHHH
Confidence 56 899999999999999999999999887542211121 22333356543 24443344555566777889999999
Q ss_pred Hhccchhhcc
Q psy930 79 CYNKYHLTCS 88 (89)
Q Consensus 79 ~~gvk~~~~~ 88 (89)
++|+|.++|+
T Consensus 139 ~~G~k~~~~i 148 (507)
T TIGR00910 139 FGGTKRTAKI 148 (507)
T ss_pred HhhhHHHHHH
Confidence 9999998874
No 28
>PRK10836 lysine transporter; Provisional
Probab=99.26 E-value=6.5e-11 Score=82.86 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=59.1
Q ss_pred CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q psy930 1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCY 80 (89)
Q Consensus 1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~ 80 (89)
++|++||.|.|+++.+||..||++||.+|+.+ ....+.+..+...++.. ++|+. + ....+.+.+.+++.+|++
T Consensus 75 ~~P~sGg~y~y~~~~~g~~~gf~~Gw~~~~~~-~~~~a~~~~a~~~~~~~-~~~~~--~---~~~~~~~~~~~~~~lN~~ 147 (489)
T PRK10836 75 YMPVSGSFATYGQNYVEEGFGFALGWNYWYNW-AVTIAVDLVAAQLVMSW-WFPDT--P---GWIWSALFLGVIFLLNYI 147 (489)
T ss_pred HCCCCCCHHHHHHHHcChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhh-cCCCC--c---hHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999865 44455444444444443 45542 2 234455667778899999
Q ss_pred ccchhhcc
Q psy930 81 NKYHLTCS 88 (89)
Q Consensus 81 gvk~~~~~ 88 (89)
|+|..+++
T Consensus 148 gv~~~~~~ 155 (489)
T PRK10836 148 SVRGFGEA 155 (489)
T ss_pred cchhhhhh
Confidence 99987763
No 29
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.25 E-value=4.4e-11 Score=83.40 Aligned_cols=87 Identities=25% Similarity=0.296 Sum_probs=65.4
Q ss_pred CCCCCcchhhhHHHHhC----ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhh---CCC--CCCchHHHHHHHHHHH
Q psy930 1 MIPKSGGDYAYINEAFG----PLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPI---WPH--CDPPYSAVRLLAAVIT 71 (89)
Q Consensus 1 ~~P~~GG~y~y~~~~~G----~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~---~~~--~~~~~~~~~~~a~~~~ 71 (89)
++|++||+|+|+++.+| +..||++||.+++.+ ....+..+...++|+...+ .|+ ..++++....+.++++
T Consensus 73 ~~P~~Gg~y~~~~~~~g~~~g~~~~f~~gW~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 151 (482)
T TIGR00907 73 AYPTSGGQYFWSAKLAPPRQMPFASWMTGWFNLAGQ-VAGTASTDLSVAQLILGIVSLTTPGREYIPTRWHIFGIMIGIH 151 (482)
T ss_pred hCCCCccHHHHHHHhcccccccceeHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhhhhHHHHH
Confidence 47999999999999987 577999999998876 5567777888888876421 222 2223344466777788
Q ss_pred HHHHHHHHhccchhhcc
Q psy930 72 CLLTAINCYNKYHLTCS 88 (89)
Q Consensus 72 ~~~~~iN~~gvk~~~~~ 88 (89)
++++.+|++|+|..+|+
T Consensus 152 ~~~~~in~~g~k~~~~~ 168 (482)
T TIGR00907 152 LIHALINSLPTKWLPRI 168 (482)
T ss_pred HHHHHHHHhhHhHHHHH
Confidence 99999999999987653
No 30
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.21 E-value=1.6e-10 Score=80.57 Aligned_cols=80 Identities=11% Similarity=0.171 Sum_probs=63.9
Q ss_pred CCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHhc
Q psy930 2 IPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCYN 81 (89)
Q Consensus 2 ~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~g 81 (89)
.|..|+.|.|+++.+||..||++||.+++.+ ....+.++.+++.|+.. ++|+. + .+..+.+++.+++.+|++|
T Consensus 80 ~~~~~~~~~ya~~~~g~~~gf~~gW~~~~~~-~~~~~a~~~a~~~~~~~-~~p~~--~---~~~~~~~~~~~~~~iN~~g 152 (469)
T PRK11049 80 NLEYKSFSDFASDLLGPWAGYFTGWTYWFCW-VVTGIADVVAITAYAQF-WFPDL--S---DWVASLAVVLLLLSLNLAT 152 (469)
T ss_pred cCCCCcHHHHHHHHhCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hcCCC--c---HHHHHHHHHHHHHHHHHHh
Confidence 5888999999999999999999999999876 34555667788888886 56653 2 2345566778889999999
Q ss_pred cchhhcc
Q psy930 82 KYHLTCS 88 (89)
Q Consensus 82 vk~~~~~ 88 (89)
+|..+|+
T Consensus 153 ~~~~~~i 159 (469)
T PRK11049 153 VKMFGEM 159 (469)
T ss_pred HHHHHHH
Confidence 9998774
No 31
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.20 E-value=2.2e-10 Score=79.74 Aligned_cols=81 Identities=14% Similarity=0.090 Sum_probs=61.0
Q ss_pred CCCCC-cchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHH
Q psy930 1 MIPKS-GGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINC 79 (89)
Q Consensus 1 ~~P~~-GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~ 79 (89)
++|++ ||.|.|+++.+||..||++||.+|+.+ ....+.++.+.++|+.. +.|+. + ......+++++++++|+
T Consensus 62 ~~P~~gG~~~~~~~~~~g~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~--~---~~~~~~~~~~~~~~in~ 134 (478)
T TIGR00913 62 FYPVVSGSFATYASRFVDPAFGFAVGWNYWLQW-LIVLPLELVTASMTIQY-WTDKV--N---PAVWIAIFYVFIVIINL 134 (478)
T ss_pred hCCCCCCCHHHHHHHHcCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-cCCCC--C---HHHHHHHHHHHHHHHHH
Confidence 47965 567789999999999999999999876 55678888888888875 44432 2 12222345667889999
Q ss_pred hccchhhcc
Q psy930 80 YNKYHLTCS 88 (89)
Q Consensus 80 ~gvk~~~~~ 88 (89)
+|+|.++|+
T Consensus 135 ~gv~~~~~~ 143 (478)
T TIGR00913 135 FGVKGYGEA 143 (478)
T ss_pred hcchHHHHH
Confidence 999998764
No 32
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.09 E-value=1.2e-09 Score=76.61 Aligned_cols=86 Identities=19% Similarity=0.235 Sum_probs=53.2
Q ss_pred CCCC-CcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHH-HH---HH-----HHHHhhhh-CCCCCCchHHHHHHHHH
Q psy930 1 MIPK-SGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVT-AL---TF-----AQYILQPI-WPHCDPPYSAVRLLAAV 69 (89)
Q Consensus 1 ~~P~-~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~-a~---~~-----~~y~~~~~-~~~~~~~~~~~~~~a~~ 69 (89)
++|+ +||+|+|+++.+||++||+.+|.+|..+. ...+.. +. .. +.|..+.+ .++. .++.....+++.
T Consensus 64 ~~P~~aGG~Y~w~~~~~G~~~gf~~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~ 141 (496)
T PRK15238 64 AFKDEKGGIYSWMNKSVGPKFAFIGTFMWFASYI-IWMVSTASKIWIPFSTFIFGKDTTQTWHFLGL-NSTQVVGILAVI 141 (496)
T ss_pred cCCCCCCcHHHHHHHHcCchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCcchhhhhhhhcc-cchHHHHHHHHH
Confidence 4797 89999999999999999999998776542 222111 11 11 11111100 0010 111223355666
Q ss_pred HHHHHHHHHHhccchhhcc
Q psy930 70 ITCLLTAINCYNKYHLTCS 88 (89)
Q Consensus 70 ~~~~~~~iN~~gvk~~~~~ 88 (89)
.+.+++.+|++|+|.++|+
T Consensus 142 ~~~~~t~vn~~g~~~~~~i 160 (496)
T PRK15238 142 WMILVTFVASKGINKIAKV 160 (496)
T ss_pred HHHHHHHHHccchHHHHHH
Confidence 6678999999999998874
No 33
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.00 E-value=2e-10 Score=80.03 Aligned_cols=86 Identities=21% Similarity=0.306 Sum_probs=64.9
Q ss_pred CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhh--CCCCCCchHHHHHHHHHHHHHHHHHH
Q psy930 1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPI--WPHCDPPYSAVRLLAAVITCLLTAIN 78 (89)
Q Consensus 1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~--~~~~~~~~~~~~~~a~~~~~~~~~iN 78 (89)
.+|++||.|.|++|.+||..||..||.+|+.+ ....+.+..+.+.++.. + +++......+..+++.+.+.+++.+|
T Consensus 55 ~~p~~Gg~y~y~~~~lg~~~Gf~~gw~y~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~l~ 132 (478)
T PF00324_consen 55 RFPSAGGFYAYASRGLGPALGFAAGWAYWLSY-IAAIAAEATAAGSFLQF-WGYFPGLPSTWVWGILIAIIFILLITLLN 132 (478)
T ss_pred hhccccchhhhhhhccCCcCCceeeHHHHHHH-HHHHHhhhhhhhhhhcc-ccccccccccccccchhhhhhhhhhhhhh
Confidence 36999999999999999999999999999876 56677777777766654 3 34322111111145778888899999
Q ss_pred Hhccchhhcc
Q psy930 79 CYNKYHLTCS 88 (89)
Q Consensus 79 ~~gvk~~~~~ 88 (89)
++|+|..+|+
T Consensus 133 ~~gv~~~~~~ 142 (478)
T PF00324_consen 133 LFGVRVSGKI 142 (478)
T ss_pred hhhhhccchH
Confidence 9999998873
No 34
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=98.97 E-value=3.2e-09 Score=72.13 Aligned_cols=86 Identities=9% Similarity=0.000 Sum_probs=63.5
Q ss_pred CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q psy930 1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCY 80 (89)
Q Consensus 1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~ 80 (89)
++|++||.|+|.++.+||..+++.+|.+++..+ ...+.+....++++.. +++....++.+....+++++++++.+|.+
T Consensus 54 ~~p~~~~~~~~~~~~~G~~~g~~~~~~~~~~~~-~~~~ay~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~v~~~l~~~ 131 (381)
T TIGR00837 54 TYPGGASFNTIAKDLLGKTGNIIAGLSLLFVLY-ILTYAYISGGGSILSR-LIGEYFGFPWSARAIVLIFTVLFGSFVWL 131 (381)
T ss_pred hCCCCCCHHHHHHHHhCHHHHHHHHHHHHHHHH-HHHHHHHHccHHHHHH-HHHHhcCCCccHHHHHHHHHHHHHHHHHh
Confidence 368999999999999999999999999887653 3455566666777765 33421111223455667778888999999
Q ss_pred ccchhhcc
Q psy930 81 NKYHLTCS 88 (89)
Q Consensus 81 gvk~~~~~ 88 (89)
|+|..+|+
T Consensus 132 G~~~~~~v 139 (381)
T TIGR00837 132 STSAVDRI 139 (381)
T ss_pred chhHHHHH
Confidence 99988774
No 35
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=98.85 E-value=2.9e-08 Score=70.19 Aligned_cols=81 Identities=15% Similarity=0.167 Sum_probs=68.0
Q ss_pred CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q psy930 1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCY 80 (89)
Q Consensus 1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~ 80 (89)
.+|.+|+..+|..|..+|-.||..||.||+.| ....+.+..+.+..+.. |+|+. .+...+..+...++..+|.+
T Consensus 104 ~~P~sGsF~~ya~rfvdpa~GFa~gWnYw~~w-~v~~~~El~aa~~vi~y-W~p~~----v~~~~w~~iF~~~i~~iN~~ 177 (541)
T COG0833 104 FYPVSGSFSTYATRFVDPAFGFALGWNYWLNW-AVTLPLELTAASLVIQY-WFPDT----VPPWIWIAIFLVLIFLLNLF 177 (541)
T ss_pred hcCCCCchhhhhhhhcCchHHHHHHHHHHHHH-HHHhhHHHHHHHHhhhh-hcCCC----CChHHHHHHHHHHHHHHHHh
Confidence 37988999999999999999999999999988 67899999999988886 66653 23556667778888999999
Q ss_pred ccchhhc
Q psy930 81 NKYHLTC 87 (89)
Q Consensus 81 gvk~~~~ 87 (89)
|+|..+.
T Consensus 178 ~Vk~fGE 184 (541)
T COG0833 178 GVKGFGE 184 (541)
T ss_pred cccccce
Confidence 9997653
No 36
>KOG1286|consensus
Probab=98.67 E-value=8.1e-08 Score=68.64 Aligned_cols=50 Identities=28% Similarity=0.336 Sum_probs=45.9
Q ss_pred CCCCC-cchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh
Q psy930 1 MIPKS-GGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQP 51 (89)
Q Consensus 1 ~~P~~-GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~ 51 (89)
++|++ ||.|.|+++.+||.+||..+|.+++.+ ....+.++.+.+.|+.++
T Consensus 90 ~~P~~aGs~~~ya~~~i~e~~aF~~gWny~l~y-~i~~a~e~~a~s~~~~~w 140 (554)
T KOG1286|consen 90 RFPVSAGSFYTYAYRFVGESLAFAIGWNYLLEY-VIGLAAEARAWSSYLDYW 140 (554)
T ss_pred ecccccccceeeeeeeeCcHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHH
Confidence 47994 999999999999999999999999988 678999999999999973
No 37
>PHA02764 hypothetical protein; Provisional
Probab=98.46 E-value=1.1e-07 Score=63.85 Aligned_cols=38 Identities=26% Similarity=0.426 Sum_probs=32.2
Q ss_pred CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHH
Q psy930 1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAV 39 (89)
Q Consensus 1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~ 39 (89)
++|++||+|.|.+|++||..|++.||..|..+ +...++
T Consensus 72 AmPrAGGdYVYISRAFGP~~GFLvG~a~WLtl-~~G~Pa 109 (399)
T PHA02764 72 KFPLNGGDYAYIRTAFSSKFYTIFGISLWLTY-VLSQPI 109 (399)
T ss_pred hCCCCCceEEEhHHhhCccHHHHHHHHHHHHH-Hhhcch
Confidence 48999999999999999999999999988765 444443
No 38
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=98.39 E-value=4.2e-06 Score=56.53 Aligned_cols=80 Identities=14% Similarity=0.118 Sum_probs=61.4
Q ss_pred CCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHhc
Q psy930 2 IPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCYN 81 (89)
Q Consensus 2 ~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~g 81 (89)
+|++ +.+.|.++.+||..|++.+|.++.. .....+.....+++++.....|+ .+...+++..++++..+|..|
T Consensus 61 ~p~~-~~~~~~~~~~Gk~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~-----tp~~~~~l~~l~~~~~~~~~G 133 (359)
T TIGR00912 61 FPEK-NFSEILSKYLGKILGRLLSILFILY-FFLIAAYLIRIFADFIKTYLLPR-----TPIIVIIILIIIVSIYIVRKG 133 (359)
T ss_pred CCCC-CHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHHHHHcc
Confidence 6876 6999999999999999999998753 35556667777787776533443 234566777788888999999
Q ss_pred cchhhcc
Q psy930 82 KYHLTCS 88 (89)
Q Consensus 82 vk~~~~~ 88 (89)
+|..+|+
T Consensus 134 i~~i~r~ 140 (359)
T TIGR00912 134 IEVLLRT 140 (359)
T ss_pred HHHHHHH
Confidence 9998875
No 39
>KOG1289|consensus
Probab=98.16 E-value=6.9e-06 Score=58.44 Aligned_cols=87 Identities=23% Similarity=0.346 Sum_probs=66.8
Q ss_pred CCCCCcchhhhHHH----HhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh---hCCCCCCchHHHHHHHHHHHHH
Q psy930 1 MIPKSGGDYAYINE----AFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQP---IWPHCDPPYSAVRLLAAVITCL 73 (89)
Q Consensus 1 ~~P~~GG~y~y~~~----~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~---~~~~~~~~~~~~~~~a~~~~~~ 73 (89)
.+|.+||.|-|+.. .+||..++++||...+++ .+..++...+.++.+... .-|+.+..++.+..+..+++.+
T Consensus 109 a~PtsGgLy~waa~lap~k~~~~~sw~~Gw~~~~g~-~~~~aSi~~S~A~~i~~~v~l~np~y~~~~~~~~~v~~ai~~v 187 (550)
T KOG1289|consen 109 AMPTSGGLYFWAAVLAPPKYGPFASWVTGWLNYLGQ-ATGVASITYSLAQLILGAVSLTNPNYEPTNYHQFGVFEAILFV 187 (550)
T ss_pred hCCCCCcHHHHHHHhcCcchhhHHHHHHHHHHHHHH-HhhchhhhHHHHHHHHHHHhhcCCCCcccceEeehHHHHHHHH
Confidence 48999999999987 466778899999887765 567777788888766543 2355555556677888899999
Q ss_pred HHHHHHhccchhhcc
Q psy930 74 LTAINCYNKYHLTCS 88 (89)
Q Consensus 74 ~~~iN~~gvk~~~~~ 88 (89)
..++|+...|.-.|+
T Consensus 188 ~~lln~~p~r~l~~I 202 (550)
T KOG1289|consen 188 HGLLNSLPTRVLARI 202 (550)
T ss_pred HHHHhcCCcHHHHHH
Confidence 999999998876653
No 40
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=97.93 E-value=0.00012 Score=50.47 Aligned_cols=83 Identities=12% Similarity=0.239 Sum_probs=55.2
Q ss_pred CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHH----HHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHH
Q psy930 1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTG----NAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTA 76 (89)
Q Consensus 1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~----~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 76 (89)
+.|++||.|.+.++.+||..|++.+|...+..-|.. .+..+.-++ ..+++|... +.....+..++...+...
T Consensus 49 av~~~gG~~~~l~~~~g~~f~~lf~~~~~l~iGP~~aiPRtaa~s~e~~---i~p~~~~~~-~~~~l~i~siiff~i~~~ 124 (378)
T TIGR00796 49 ALALVGGGYDSLSARIGKVFGILFTVILYLTIGPLFAIPRTATVSFEMG---IAPLLHSPT-SLLALFIFSLIFFAVVLL 124 (378)
T ss_pred eeeecCCCHHHHHHHhChHHHHHHHHHHHHHHHhchhhhHHHHHHHHHH---HHhccCccc-chHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999876554544 333333333 234555421 122333455555666666
Q ss_pred HHHhccchhhc
Q psy930 77 INCYNKYHLTC 87 (89)
Q Consensus 77 iN~~gvk~~~~ 87 (89)
+|+++.|...+
T Consensus 125 l~~~~~k~~~~ 135 (378)
T TIGR00796 125 LSLNPSKLIDR 135 (378)
T ss_pred HHcCcccHHHH
Confidence 89999887655
No 41
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=97.76 E-value=0.00029 Score=48.87 Aligned_cols=82 Identities=15% Similarity=0.083 Sum_probs=55.6
Q ss_pred CcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCC-CCCchHHHHHHHHHHHHHHHHHHHhccc
Q psy930 5 SGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPH-CDPPYSAVRLLAAVITCLLTAINCYNKY 83 (89)
Q Consensus 5 ~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~iN~~gvk 83 (89)
+.+...++++.|||..|.+.++.|++... ....+++....+.+.+. .+. ...+.....+.++.+++.+..++..|.|
T Consensus 65 ~~~i~~~~~~~fGk~~G~ii~~lY~~~~~-~i~~aY~~~~~~~~~~f-l~~~~~~~~p~~~i~~lilv~il~~iv~~G~~ 142 (397)
T TIGR00814 65 CEDITEVVEEHFGKNWGILITLLYFFAIY-PILLIYSVAITNDSASF-LVNQLGTAPPLRGLLSLALILILVAIMSFGEK 142 (397)
T ss_pred CCCHHHHHHHHcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHhcCCCCcHHHHHHHHHHHHHHHHHHhcHH
Confidence 67899999999999999999999987653 34455554544444331 111 1011122345677777788899999999
Q ss_pred hhhcc
Q psy930 84 HLTCS 88 (89)
Q Consensus 84 ~~~~~ 88 (89)
...|.
T Consensus 143 ~i~r~ 147 (397)
T TIGR00814 143 LLFKI 147 (397)
T ss_pred HHHHH
Confidence 88774
No 42
>KOG2083|consensus
Probab=96.58 E-value=0.0026 Score=46.17 Aligned_cols=80 Identities=21% Similarity=0.191 Sum_probs=64.3
Q ss_pred CCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHhccc
Q psy930 4 KSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCYNKY 83 (89)
Q Consensus 4 ~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~gvk 83 (89)
++||.|--+.|.+|+..|.-.|-+|.+.. ....+.....|++-+..++ ... ......-++.+.+.++..+|..|+|
T Consensus 93 k~Gg~yflis~slg~efggsigiIy~f~~-aVa~am~~vgfaEsv~~l~-~~~--s~~~i~gi~~vt~~ill~i~~ag~~ 168 (643)
T KOG2083|consen 93 KSGGVYFLISRSLGPEFGGSIGIIYAFAN-AVATAMYVVGFAESVAHLF-ETE--SKEMIDGIGSVTVLILLAINVAGVE 168 (643)
T ss_pred ccCcEEEEEEecccccccchhHHHHHHHH-HHHHHHhhhhHHHHHHHHH-Hhc--cHHHhcchhHHHHHHHHHhhhccch
Confidence 68999999999999999999998888865 6788999999999888753 332 2233444777888888999999999
Q ss_pred hhhc
Q psy930 84 HLTC 87 (89)
Q Consensus 84 ~~~~ 87 (89)
+..|
T Consensus 169 w~~k 172 (643)
T KOG2083|consen 169 WEAK 172 (643)
T ss_pred hHHH
Confidence 8776
No 43
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=94.84 E-value=0.73 Score=30.83 Aligned_cols=76 Identities=8% Similarity=0.061 Sum_probs=54.9
Q ss_pred cchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHhccchh
Q psy930 6 GGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCYNKYHL 85 (89)
Q Consensus 6 GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~gvk~~ 85 (89)
-....+.++.+||..|.+.+..+.+-. ....+.....+++.+.....|+ .+...+...++.........|.+.-
T Consensus 62 ~~l~~~~~~~~Gk~lg~ii~~~~~l~~-l~~~~~~lr~~~~~i~~~~lp~-----TP~~~i~~~~ll~~~y~a~~G~e~i 135 (320)
T PF03845_consen 62 KTLVEISEKLFGKWLGKIINLLYILYF-LLISALVLREFSEFIKTYLLPE-----TPIWVIILLFLLVAAYAARKGIEVI 135 (320)
T ss_pred CCHHHHHHHHhCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCc-----CCHHHHHHHHHHHHHHHHhcCHHHH
Confidence 456789999999999998888776533 5566777777777776644554 2355666666777777778888877
Q ss_pred hc
Q psy930 86 TC 87 (89)
Q Consensus 86 ~~ 87 (89)
+|
T Consensus 136 ~R 137 (320)
T PF03845_consen 136 AR 137 (320)
T ss_pred HH
Confidence 76
No 44
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=94.26 E-value=0.34 Score=33.75 Aligned_cols=84 Identities=8% Similarity=-0.015 Sum_probs=48.7
Q ss_pred CCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHhc
Q psy930 2 IPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCYN 81 (89)
Q Consensus 2 ~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~g 81 (89)
.|+..+.-..++|.+||..+.+.+..+.+..+. .+.++....++.+.+. ++.....+...+........++..+-..|
T Consensus 61 ~~~~~~~~~~a~~~lG~~g~~~~~~~~~~~~y~-ll~AYisg~g~~~~~~-l~~~~~~~~~~~~~~~~f~~i~~~iv~~g 138 (394)
T PF03222_consen 61 TPEGSSLTSMAEKYLGKKGGIVIGISYLFLLYA-LLVAYISGGGSILSSL-LGNQLGTDLSPWLSSLLFTIIFGGIVYFG 138 (394)
T ss_pred CCCCCCHHHHHHHHhChHHHHHHHHHHHHHHHH-HHHHHHHccHHHHHHH-HHHhcCCCCcHHHHHHHHHHHHHHHHHhh
Confidence 355666778889999999999998888766543 4455666666666553 23211111223333444444444455566
Q ss_pred cchhhc
Q psy930 82 KYHLTC 87 (89)
Q Consensus 82 vk~~~~ 87 (89)
.|...|
T Consensus 139 ~~~v~~ 144 (394)
T PF03222_consen 139 TKAVDR 144 (394)
T ss_pred HHHHHH
Confidence 665444
No 45
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=94.12 E-value=0.7 Score=32.93 Aligned_cols=84 Identities=14% Similarity=0.137 Sum_probs=52.8
Q ss_pred CCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHhcc
Q psy930 3 PKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCYNK 82 (89)
Q Consensus 3 P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~gv 82 (89)
|+..+.-+-+++.+|+.++.+.+..|.+..++. +.++.....+.+.+.+......++.+..+.+++++.++..+-..|.
T Consensus 79 ~~~~~i~~v~~~~lG~~g~~i~~ilYff~ly~l-l~aY~~~itn~l~sfl~~ql~~~~~~r~l~slifv~~l~~iv~~G~ 157 (443)
T PRK13629 79 NPSGNITETVEEHFGKTGGVVITFLYFFAICPL-LWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGK 157 (443)
T ss_pred CCCCCHHHHHHHHcChhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCcCCccHHHHHHHHHHHHHHHHHhhH
Confidence 334456677899999999999999988776554 4445555555554311000111112355677777777777877887
Q ss_pred chhhc
Q psy930 83 YHLTC 87 (89)
Q Consensus 83 k~~~~ 87 (89)
|...|
T Consensus 158 ~~v~k 162 (443)
T PRK13629 158 DLMVK 162 (443)
T ss_pred HHHHH
Confidence 76655
No 46
>KOG1288|consensus
Probab=91.40 E-value=0.13 Score=38.74 Aligned_cols=83 Identities=16% Similarity=0.135 Sum_probs=61.7
Q ss_pred CCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCC------C----CCCchHHHHHHHHHHHHH
Q psy930 4 KSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWP------H----CDPPYSAVRLLAAVITCL 73 (89)
Q Consensus 4 ~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~------~----~~~~~~~~~~~a~~~~~~ 73 (89)
+.||.|-.+.|.+||-.|.-.|-++.+.. ...++..+..+.+-+..- ++ . ++..++|..+-+..++.+
T Consensus 130 ~GGGaYymISRsLGpEfGGSIGllFf~an-V~~~am~isG~vE~il~n-fG~~a~g~sg~~~lP~g~ww~fly~t~vl~l 207 (945)
T KOG1288|consen 130 RGGGAYYMISRSLGPEFGGSIGLLFFVAN-VFNCAMNISGFVEPILDN-FGKEAQGASGSQFLPDGYWWRFLYTTLVLAL 207 (945)
T ss_pred ecCceEEEEEcccCcccCCeeeehhhHHH-HhcchhhhhhhhHHHHHh-cCccccCCcccccCCCCcchhhHHHHHHHHH
Confidence 56899999999999998888887766554 678888888888866542 22 1 122456777778888888
Q ss_pred HHHHHHhccchhhcc
Q psy930 74 LTAINCYNKYHLTCS 88 (89)
Q Consensus 74 ~~~iN~~gvk~~~~~ 88 (89)
+..+.+.|....+|.
T Consensus 208 ~~~vc~lGsalfAka 222 (945)
T KOG1288|consen 208 CLIVCLLGSALFAKA 222 (945)
T ss_pred HHHHHHhhHHHHHhh
Confidence 888888888877775
No 47
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=90.37 E-value=1.9 Score=30.29 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=32.2
Q ss_pred CCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy930 3 PKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYI 48 (89)
Q Consensus 3 P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~ 48 (89)
|+.-+.-+-+++.+||..+.+....+.+..++ .+.++...-++-+
T Consensus 62 ~~~~~~~~~a~~~LG~~g~~i~~~~y~fl~y~-ll~AYisg~g~il 106 (403)
T PRK15132 62 PADTGLGTLAKRYLGRYGQWLTGFSMMFLMYA-LTAAYISGAGELL 106 (403)
T ss_pred CCCCCHHHHHHHHhChHHHHHHHHHHHHHHHH-HHHHHHhCcHHHH
Confidence 44556778899999999999988888776544 4555666644443
No 48
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=88.63 E-value=4.3 Score=28.55 Aligned_cols=84 Identities=7% Similarity=0.048 Sum_probs=51.7
Q ss_pred CCCCc-chhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCC-CCCchHHHHHHHHHHHHHHHHHHH
Q psy930 2 IPKSG-GDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPH-CDPPYSAVRLLAAVITCLLTAINC 79 (89)
Q Consensus 2 ~P~~G-G~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~iN~ 79 (89)
.|+.. +..+=+++.+||.++.+.+-.+.+..+. ...++....++-+.+ +++. ...++....+..+++...+..+-.
T Consensus 67 ~~~~~~~~~~~~~~~~G~~~~~li~~s~~~~~~~-~~~aY~~~~g~~l~~-~~~~~~~~~~~~r~~~~lif~~~~~~l~~ 144 (415)
T COG0814 67 SPNGKASITSLVEDYLGKKGGILIGLSYFFALYG-LLVAYIVGIGNLLAS-FLGNQFGLNPLPRKLGSLIFALVLAFLSW 144 (415)
T ss_pred CCCCcccHHHHHHHHhCcchHHHHHHHHHHHHHH-HHHHHHhcchhHHHH-HHHhhcccCCcchHHHHHHHHHHHHHHHH
Confidence 35553 7888899999999999999888776543 455566666666655 2332 111113344555555555555666
Q ss_pred hccchhhc
Q psy930 80 YNKYHLTC 87 (89)
Q Consensus 80 ~gvk~~~~ 87 (89)
.|.+..-|
T Consensus 145 ~~~~~~lk 152 (415)
T COG0814 145 LGTLAVLK 152 (415)
T ss_pred hchhHHHH
Confidence 66555443
No 49
>KOG2082|consensus
Probab=88.27 E-value=0.25 Score=37.61 Aligned_cols=83 Identities=18% Similarity=0.210 Sum_probs=55.6
Q ss_pred CCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCC------C------chHHHHHHHHHHH
Q psy930 4 KSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCD------P------PYSAVRLLAAVIT 71 (89)
Q Consensus 4 ~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~------~------~~~~~~~~a~~~~ 71 (89)
.+||.|-...|.+||-.|-.+|-++.++. ..+.|.+.+...+.+....+|... . -....+.-+.+++
T Consensus 177 paGGsYfmISRsLGPEFGgAVGlcFYLgt-T~AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a~~~~~am~nnlRvYGT~~L 255 (1075)
T KOG2082|consen 177 PAGGSYFMISRSLGPEFGGAVGLCFYLGT-TVAAAMYILGAVEIFLTYIFPAAAIFGAEDAHDEAAAMLNNLRVYGTVFL 255 (1075)
T ss_pred cCCCeeEEEecccCccccceeeehhhhhh-HHHHHHHHHhHHHHHHHHHccHhhhcCccccccchhhhhcceehHHHHHH
Confidence 47999999999999999988887766654 556666777766655432344210 0 0112345567777
Q ss_pred HHHHHHHHhccchhhc
Q psy930 72 CLLTAINCYNKYHLTC 87 (89)
Q Consensus 72 ~~~~~iN~~gvk~~~~ 87 (89)
++..++-..|+|..-|
T Consensus 256 i~m~lIVf~GVK~Vnk 271 (1075)
T KOG2082|consen 256 ILMALIVFVGVKFVNK 271 (1075)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7888888888886544
No 50
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=86.43 E-value=8.5 Score=27.42 Aligned_cols=75 Identities=24% Similarity=0.274 Sum_probs=40.4
Q ss_pred cchhhhHHHHhC-ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHhccch
Q psy930 6 GGDYAYINEAFG-PLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCYNKYH 84 (89)
Q Consensus 6 GG~y~y~~~~~G-~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~gvk~ 84 (89)
||+-.|.++.++ |+.|.+..-. .+.++......++...++-+.+.+ + .| .+..++++..+...+-.-|+|.
T Consensus 116 GGP~yyi~~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~-~---~~---~~v~~i~l~~l~~~vi~GGik~ 187 (425)
T TIGR00835 116 GGPMYYIKKGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAF-N---VP---KLVTGIVLTVLTALIIFGGLKR 187 (425)
T ss_pred cChHHHHHHHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHc-C---Cc---HHHHHHHHHHHHHHHHhcCchH
Confidence 566688888876 5666665544 222323334556666666665322 2 12 3444444444444444447776
Q ss_pred hhcc
Q psy930 85 LTCS 88 (89)
Q Consensus 85 ~~~~ 88 (89)
-+|+
T Consensus 188 Ia~v 191 (425)
T TIGR00835 188 IAKI 191 (425)
T ss_pred HHHH
Confidence 6654
No 51
>PRK10483 tryptophan permease; Provisional
Probab=82.47 E-value=13 Score=26.45 Aligned_cols=83 Identities=6% Similarity=-0.062 Sum_probs=46.9
Q ss_pred CCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHhc
Q psy930 2 IPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCYN 81 (89)
Q Consensus 2 ~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~g 81 (89)
+|+.-+.-..+++.+||.+..+.+..+.+..+ ..+.++...-++.+.+. +++... +.+.+.-+++...++..+-+.|
T Consensus 69 ~~~g~~~~tma~~~LG~~g~~i~~~s~lfl~Y-~Ll~AYisg~g~il~~~-l~~~~~-~i~~~~~~llF~~~~~~iv~~g 145 (414)
T PRK10483 69 YRIGSSFDTITKDLLGKGWNVVNGISIAFVLY-ILTYAYISASGSILHHT-FAEMSL-NVPARAAGFGFALLVAFVVWLS 145 (414)
T ss_pred CCCCCCHHHHHHHHcChHHHHHHHHHHHHHHH-HHHHHHHhCcHHHHHHH-HHhcCC-CCcHHHHHHHHHHHHHHHHHhh
Confidence 35556677889999999866555544544333 34445555566666553 332111 1123445555566666666667
Q ss_pred cchhhc
Q psy930 82 KYHLTC 87 (89)
Q Consensus 82 vk~~~~ 87 (89)
.|...|
T Consensus 146 t~~vd~ 151 (414)
T PRK10483 146 TKAVSR 151 (414)
T ss_pred hhHHHH
Confidence 765554
No 52
>PRK09664 tryptophan permease TnaB; Provisional
Probab=80.99 E-value=17 Score=25.82 Aligned_cols=84 Identities=7% Similarity=-0.022 Sum_probs=45.7
Q ss_pred CCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHhc
Q psy930 2 IPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCYN 81 (89)
Q Consensus 2 ~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~g 81 (89)
+|+.-+.-+.+++.+||..-.+.+..+.+..+ ....++...-++.+.+. +++...-+.+.+..+++..+++..+-+.|
T Consensus 67 ~~~g~~l~tma~~~LG~~g~~i~~~~~~fl~Y-~Ll~AYisggG~il~~~-l~~~~~~~i~~~~~~llF~~~~~~~v~~g 144 (415)
T PRK09664 67 YPVGSSFNTITKDLIGNTWNIISGITVAFVLY-ILTYAYISANGAIISET-ISMNLGYHANPRIVGICTAIFVASVLWIS 144 (415)
T ss_pred CCCCCCHHHHHHHHcChHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHH-HhhhccCCCcHHHHHHHHHHHHHHHHHhc
Confidence 45666677889999999765555554444333 34455555666666553 23210001123334455556666666666
Q ss_pred cchhhc
Q psy930 82 KYHLTC 87 (89)
Q Consensus 82 vk~~~~ 87 (89)
.|...|
T Consensus 145 t~~vd~ 150 (415)
T PRK09664 145 SLAASR 150 (415)
T ss_pred hhHHHH
Confidence 665544
No 53
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=79.59 E-value=20 Score=25.60 Aligned_cols=77 Identities=17% Similarity=0.199 Sum_probs=38.8
Q ss_pred CcchhhhHHHHhCChH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHhccc
Q psy930 5 SGGDYAYINEAFGPLP-AFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCYNKY 83 (89)
Q Consensus 5 ~GG~y~y~~~~~G~~~-gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~gvk 83 (89)
.||+..|.++.+|.++ +.+..-..............+...++-+.+. ++ .| ....++++..+..++-.-|+|
T Consensus 87 ~GGP~yyi~~gl~~k~la~~fai~~~~~~~~~~~~~Q~nsi~~~~~~~-f~---i~---~~~~gi~l~~l~~~vi~GGik 159 (416)
T PF01235_consen 87 RGGPMYYIEKGLGSKWLAILFAIFLIIAFGIGFNMVQANSIADALSSA-FG---IP---PWITGIILAILVALVIFGGIK 159 (416)
T ss_pred eecHHHHHHHHhccchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh-cc---cc---HHHHHHHHHHHHHHHHHcchh
Confidence 5899999999999874 2222211111110111223333334333332 11 12 345566666666666677777
Q ss_pred hhhcc
Q psy930 84 HLTCS 88 (89)
Q Consensus 84 ~~~~~ 88 (89)
.-+|+
T Consensus 160 rI~~v 164 (416)
T PF01235_consen 160 RIAKV 164 (416)
T ss_pred HHHHH
Confidence 66654
No 54
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=75.41 E-value=28 Score=25.17 Aligned_cols=77 Identities=17% Similarity=0.199 Sum_probs=45.6
Q ss_pred CcchhhhHHHHhCCh-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHhccc
Q psy930 5 SGGDYAYINEAFGPL-PAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCYNKY 83 (89)
Q Consensus 5 ~GG~y~y~~~~~G~~-~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~gvk 83 (89)
.||+-.|.++.+|.+ .|-+.+.......-......++.+.++-+.+.+ + .++...++++..+...+-+-|+|
T Consensus 131 ~GGP~yYi~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af-~------~~~~~~gi~la~l~~~VI~GGi~ 203 (452)
T COG1115 131 RGGPAYYIEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAF-G------IPPLVTGIVLALLVALVIFGGIK 203 (452)
T ss_pred cCChHHHHHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhc-C------CcHHHHHHHHHHHHHHHHHcchH
Confidence 589999999999875 333333222222211344556666666666532 2 12456666777777777777777
Q ss_pred hhhcc
Q psy930 84 HLTCS 88 (89)
Q Consensus 84 ~~~~~ 88 (89)
.-+|+
T Consensus 204 rIa~v 208 (452)
T COG1115 204 RIAKV 208 (452)
T ss_pred HHHHH
Confidence 66654
No 55
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=57.84 E-value=69 Score=23.11 Aligned_cols=45 Identities=18% Similarity=0.298 Sum_probs=31.7
Q ss_pred hhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCC
Q psy930 9 YAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPH 55 (89)
Q Consensus 9 y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~ 55 (89)
-+++++.||+.-..+.+-+..+.+ .....-...+.+||+.+ ..|.
T Consensus 266 ~~~s~~~fG~~G~~lL~~iv~lAC-LTTaiGLi~a~aefF~~-~~p~ 310 (431)
T COG1114 266 SAYSQHLFGSYGSILLGLIVFLAC-LTTAVGLIVACAEFFSK-LVPK 310 (431)
T ss_pred HHHHHHHhchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hccc
Confidence 367888999976677776655555 33444567889999998 4574
No 56
>PF13317 DUF4088: Protein of unknown function (DUF4088)
Probab=54.10 E-value=7.3 Score=25.01 Aligned_cols=15 Identities=33% Similarity=0.756 Sum_probs=13.4
Q ss_pred CcchhhhHHHHhCCh
Q psy930 5 SGGDYAYINEAFGPL 19 (89)
Q Consensus 5 ~GG~y~y~~~~~G~~ 19 (89)
+||+|.|+++.|.+-
T Consensus 50 ~~GqYaWAkr~~DK~ 64 (229)
T PF13317_consen 50 QGGQYAWAKRVFDKQ 64 (229)
T ss_pred hcchhHHHHHHhhhh
Confidence 699999999999874
No 57
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=51.78 E-value=57 Score=20.35 Aligned_cols=35 Identities=17% Similarity=0.234 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHH
Q psy930 34 PTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAV 69 (89)
Q Consensus 34 ~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~ 69 (89)
.+..++.++++++-+.. +||+-+.+.....+.+++
T Consensus 23 v~~lai~sl~~s~llI~-lFg~~~~~nf~~NllGVi 57 (165)
T PF11286_consen 23 VASLAILSLAFSQLLIA-LFGGESGGNFHWNLLGVI 57 (165)
T ss_pred HHHHHHHHHHHHHHHHH-HcCCCCCCceeeeHHHHH
Confidence 45677788899988887 567533333333344333
No 58
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=42.79 E-value=1.3e+02 Score=21.73 Aligned_cols=43 Identities=16% Similarity=0.254 Sum_probs=30.8
Q ss_pred hhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCC
Q psy930 10 AYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWP 54 (89)
Q Consensus 10 ~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~ 54 (89)
..+++.+|+.-..+.+-...+.... ..--...+.++|+.+. +|
T Consensus 265 ~i~~~~~G~~G~~ll~iiv~lACLT-TaIGL~~a~a~yf~~~-~~ 307 (427)
T PF05525_consen 265 QIANHLFGSAGQILLGIIVFLACLT-TAIGLISACAEYFSEL-FP 307 (427)
T ss_pred HHHHHHcChhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-hc
Confidence 4567789998777777776666644 4444678899999984 56
No 59
>COG5478 Predicted small integral membrane protein [Function unknown]
Probab=42.03 E-value=46 Score=20.22 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=18.0
Q ss_pred hhHHHHhCChHHHHHHHHHHHHH
Q psy930 10 AYINEAFGPLPAFLYMWVALFVI 32 (89)
Q Consensus 10 ~y~~~~~G~~~gf~~gw~~~~~~ 32 (89)
.++.+..|+.++|...|...+.|
T Consensus 11 ~~~A~~~g~p~~fvv~~~~i~vw 33 (141)
T COG5478 11 NRVADFLGRPPAFVVALVAILVW 33 (141)
T ss_pred HHHHHHhcCChHHHHHHHHHHHH
Confidence 45677889999999888876655
No 60
>PF03911 Sec61_beta: Sec61beta family; InterPro: IPR005609 This family consists of Sec61 subunit beta and homologues like archaeal SecG. This subunit is a component of the Sec61/SecYEG protein secretory system.; PDB: 2WWA_C 2WW9_C 3BO0_C 3KCR_C 3BO1_C 2YXR_C 3DKN_C 2YXQ_C 1RH5_C 1RHZ_C ....
Probab=37.22 E-value=40 Score=15.83 Aligned_cols=22 Identities=5% Similarity=0.247 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhc
Q psy930 60 YSAVRLLAAVITCLLTAINCYN 81 (89)
Q Consensus 60 ~~~~~~~a~~~~~~~~~iN~~g 81 (89)
+.....++++++.....+|.++
T Consensus 20 P~~Vl~~si~fi~~V~~Lhi~~ 41 (41)
T PF03911_consen 20 PKTVLIISIAFIAIVILLHIFA 41 (41)
T ss_dssp CCHHHHHHHHHHHHHHHHT-SS
T ss_pred CeehHHHHHHHHHHHHHHhhhC
Confidence 3345566777777777787653
No 61
>KOG3457|consensus
Probab=32.56 E-value=38 Score=18.81 Aligned_cols=23 Identities=9% Similarity=0.106 Sum_probs=18.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHhc
Q psy930 59 PYSAVRLLAAVITCLLTAINCYN 81 (89)
Q Consensus 59 ~~~~~~~~a~~~~~~~~~iN~~g 81 (89)
++....+.++.++..++.++++|
T Consensus 59 ~PvvVLvmSvgFIasV~~LHi~g 81 (88)
T KOG3457|consen 59 DPVVVLVMSVGFIASVFALHIWG 81 (88)
T ss_pred CCeeehhhhHHHHHHHHHHHHHH
Confidence 44556677888899999999887
No 62
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=30.57 E-value=2e+02 Score=20.31 Aligned_cols=44 Identities=23% Similarity=0.362 Sum_probs=31.3
Q ss_pred hhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCC
Q psy930 10 AYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPH 55 (89)
Q Consensus 10 ~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~ 55 (89)
+.+++.||+.-+.+.+-...+.. .........++++|+.+ .+|.
T Consensus 259 ~~a~~~~G~~G~~ll~i~v~lAC-LtT~iGli~~~a~~f~~-~~~k 302 (378)
T TIGR00796 259 AYSQHLFGSLGSFLLGLIITLAC-LTTAVGLTTACSEYFHK-LVPK 302 (378)
T ss_pred HHHHHHcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hcCC
Confidence 66788999987777776666655 34445567779999997 4453
No 63
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=27.17 E-value=2.5e+02 Score=20.41 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=31.4
Q ss_pred hhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh
Q psy930 9 YAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQP 51 (89)
Q Consensus 9 y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~ 51 (89)
-..+++.+|+....+.+-..++... .+......++++|+.+.
T Consensus 268 ~~~~~~~~G~~G~~ll~iiv~lACL-TTaIGLi~a~a~~f~~~ 309 (439)
T PRK15433 268 HAYVQHTFGGGGSFLLAALIFIACL-VTAVGLTCACAEFFAQY 309 (439)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Confidence 3567889999988888877777664 34455678889999874
No 64
>KOG3659|consensus
Probab=25.81 E-value=1.1e+02 Score=23.31 Aligned_cols=23 Identities=9% Similarity=-0.195 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHhccchhhccC
Q psy930 67 AAVITCLLTAINCYNKYHLTCSV 89 (89)
Q Consensus 67 a~~~~~~~~~iN~~gvk~~~~~~ 89 (89)
.+++-+++.+.-..|+|.++|++
T Consensus 258 ~~lv~~liyf~~~kG~kssGKvv 280 (629)
T KOG3659|consen 258 LVLVWLLIYFSLWKGVKSSGKVV 280 (629)
T ss_pred HHHHHHHHHHHHhccccccceEE
Confidence 34444456678889999999874
No 65
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=25.15 E-value=1.6e+02 Score=17.61 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=16.6
Q ss_pred hhHHHHhCChHHHHHHHHHHHHH
Q psy930 10 AYINEAFGPLPAFLYMWVALFVI 32 (89)
Q Consensus 10 ~y~~~~~G~~~gf~~gw~~~~~~ 32 (89)
.++.+.-|+.++|+..|...++|
T Consensus 6 ~~is~~~gs~~~f~~~~~~Ii~W 28 (132)
T PF04120_consen 6 NWISDVAGSPWAFVIAVAVIIVW 28 (132)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHH
Confidence 45666778888888887766555
No 66
>PF04547 Anoctamin: Calcium-activated chloride channel; InterPro: IPR007632 This family contains the anoctamin/TMEM16 proteins which are thought to be calcium-dependent chloride channel [].
Probab=21.60 E-value=3.1e+02 Score=19.49 Aligned_cols=28 Identities=21% Similarity=0.408 Sum_probs=19.5
Q ss_pred HHHHhCChHHHHHHHHHHHHHhhHHHHH
Q psy930 12 INEAFGPLPAFLYMWVALFVIMPTGNAV 39 (89)
Q Consensus 12 ~~~~~G~~~gf~~gw~~~~~~~~~~~a~ 39 (89)
+++.||+..|+-..|...........+.
T Consensus 1 Ir~YFGekia~YFafl~~yt~~L~~~ai 28 (452)
T PF04547_consen 1 IRSYFGEKIAFYFAFLGFYTRWLIPPAI 28 (452)
T ss_pred ChHHhchHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999998765443333333
No 67
>KOG1304|consensus
Probab=21.29 E-value=2.8e+02 Score=20.24 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=25.8
Q ss_pred HHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Q psy930 13 NEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQ 50 (89)
Q Consensus 13 ~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~ 50 (89)
.|.+||...+++.-...+ .+...+.++.+..++-+.+
T Consensus 131 ~r~~g~~~r~~V~~~L~i-~QlGfc~vY~VFva~nl~~ 167 (449)
T KOG1304|consen 131 LRKYGPAARFVVNFFLVI-TQLGFCCVYLVFVATNLKQ 167 (449)
T ss_pred HHhhcHHHHHHHHHHHHH-HHhchhhEEeeeHHhhHHH
Confidence 677899988888876554 3455666666666666665
Done!