Query psy930
Match_columns 89
No_of_seqs 174 out of 1077
Neff 9.1
Searched_HMMs 29240
Date Fri Aug 16 23:55:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy930.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/930hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.4 3.5E-13 1.2E-17 91.1 7.6 85 1-88 66-150 (445)
2 4djk_A Probable glutamate/gamm 99.4 4.9E-13 1.7E-17 91.8 7.8 86 1-88 69-155 (511)
3 3gia_A Uncharacterized protein 99.3 2.6E-11 8.9E-16 82.0 10.7 85 1-88 65-150 (444)
4 2ww9_C Protein transport prote 50.2 16 0.00055 19.5 2.7 26 56-81 57-82 (87)
5 2wwb_C SEC61BETA, protein tran 41.7 13 0.00044 20.3 1.5 25 57-81 67-91 (96)
6 2jln_A MHP1; hydantoin, transp 32.5 93 0.0032 21.4 5.0 19 11-29 93-111 (501)
7 2xq2_A Sodium/glucose cotransp 13.3 3.6E+02 0.012 18.9 7.9 21 7-27 113-133 (593)
8 3dh4_A Sodium/glucose cotransp 13.1 3.5E+02 0.012 18.7 6.9 21 7-27 84-104 (530)
9 1rh5_C Secbeta; protein transl 11.9 1.6E+02 0.0054 14.0 4.1 24 57-80 27-50 (53)
10 1m56_D Cytochrome C oxidase; m 6.1 3E+02 0.01 12.8 2.4 17 62-78 34-50 (51)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.43 E-value=3.5e-13 Score=91.12 Aligned_cols=85 Identities=19% Similarity=0.312 Sum_probs=72.0
Q ss_pred CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q psy930 1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCY 80 (89)
Q Consensus 1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~ 80 (89)
++|++||.|+|+++.+||..||+.+|.+++.+ ....+.++..+++|+.. ++|+.. ++++..+++++++++++.+|++
T Consensus 66 ~~p~~Gg~y~~~~~~~G~~~g~~~g~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~in~~ 142 (445)
T 3l1l_A 66 LDPSPGGSYAYARRCFGPFLGYQTNVLYWLAC-WIGNIAMVVIGVGYLSY-FFPILK-DPWVLTITCVVVLWIFVLLNIV 142 (445)
T ss_dssp HCCCTTTHHHHHHHHSCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTT-TCGGGG-SHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCchhhHHhHcCChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HCcccc-ccHHHHHHHHHHHHHHHHHHHh
Confidence 37999999999999999999999999999876 45677788899999986 567543 3456778899999999999999
Q ss_pred ccchhhcc
Q psy930 81 NKYHLTCS 88 (89)
Q Consensus 81 gvk~~~~~ 88 (89)
|+|..+|+
T Consensus 143 g~~~~~~~ 150 (445)
T 3l1l_A 143 GPKMITRV 150 (445)
T ss_dssp CHHHHHHH
T ss_pred chHHHHHH
Confidence 99998874
No 2
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.42 E-value=4.9e-13 Score=91.82 Aligned_cols=86 Identities=15% Similarity=0.163 Sum_probs=66.7
Q ss_pred CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhh-CCCCCCchHHHHHHHHHHHHHHHHHHH
Q psy930 1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPI-WPHCDPPYSAVRLLAAVITCLLTAINC 79 (89)
Q Consensus 1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~iN~ 79 (89)
++| +||.|.|+++.+||.+||+.+|.+|+.+ ....+......++++...+ .|+...+++...+++++++++++.+|+
T Consensus 69 ~~P-~GG~y~~~~~~~g~~~g~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~in~ 146 (511)
T 4djk_A 69 GWE-EGGVFAWVSNTLGPRWGFAAISFGYLQI-AIGFIPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALALTQF 146 (511)
T ss_dssp CC----CHHHHHHHHHCHHHHHHHHHHHHHHH-HHHTHHHHHHHHHHHHTTTTCGGGTSCSSHHHHHHHHHHHHHHHHHH
T ss_pred cCC-CCChhhhHHhhcCchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCcccccCcHHHHHHHHHHHHHHHHHHH
Confidence 479 9999999999999999999999999876 4556666777777776522 455544556677889999999999999
Q ss_pred hccchhhcc
Q psy930 80 YNKYHLTCS 88 (89)
Q Consensus 80 ~gvk~~~~~ 88 (89)
+|+|..+|+
T Consensus 147 ~g~~~~~~~ 155 (511)
T 4djk_A 147 GGTKYTARI 155 (511)
T ss_dssp TCSSSHHHH
T ss_pred hChHHHHHH
Confidence 999998874
No 3
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.31 E-value=2.6e-11 Score=82.00 Aligned_cols=85 Identities=19% Similarity=0.168 Sum_probs=69.7
Q ss_pred CCCCCcchhhhHHHHhCChH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHH
Q psy930 1 MIPKSGGDYAYINEAFGPLP-AFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINC 79 (89)
Q Consensus 1 ~~P~~GG~y~y~~~~~G~~~-gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~ 79 (89)
++|++||.|.|+++.+||.+ +...+|.+|+.+ ....+.++.++++|+.. ++|.. .++++..+++.+++++++.+|+
T Consensus 65 ~~P~~Gg~y~~~~~~~G~~~~~g~~~~~~~~~~-~~~~a~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~in~ 141 (444)
T 3gia_A 65 KIVSNAGPIAFIHKAIGDNIITGALSILLWMSY-VISIALFAKGFAGYFLP-LINAP-INTFNIAITEIGIVAFFTALNF 141 (444)
T ss_dssp TCCCTTTHHHHHHHHHCSSHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HTTCC-CCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCCcHHHhHHHHhCcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HhCCC-CchHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999963 445589988876 56788899999999987 45653 3445667888999999999999
Q ss_pred hccchhhcc
Q psy930 80 YNKYHLTCS 88 (89)
Q Consensus 80 ~gvk~~~~~ 88 (89)
+|+|..+|+
T Consensus 142 ~g~~~~~~~ 150 (444)
T 3gia_A 142 FGSKAVGRA 150 (444)
T ss_dssp HTHHHHHHH
T ss_pred HhHHHHHHH
Confidence 999998874
No 4
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=50.19 E-value=16 Score=19.54 Aligned_cols=26 Identities=12% Similarity=0.024 Sum_probs=15.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHhc
Q psy930 56 CDPPYSAVRLLAAVITCLLTAINCYN 81 (89)
Q Consensus 56 ~~~~~~~~~~~a~~~~~~~~~iN~~g 81 (89)
+..++.....++++++..+.++|++|
T Consensus 57 lKV~P~~VLv~sl~FIa~VilLHI~g 82 (87)
T 2ww9_C 57 FRVDSLVVLFLSVGFIFSVIALHLLT 82 (87)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHC----
T ss_pred eEEcCeeehhhHHHHHHHHHHHHHhh
Confidence 34455566677888888889999887
No 5
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=41.70 E-value=13 Score=20.29 Aligned_cols=25 Identities=4% Similarity=0.081 Sum_probs=18.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHhc
Q psy930 57 DPPYSAVRLLAAVITCLLTAINCYN 81 (89)
Q Consensus 57 ~~~~~~~~~~a~~~~~~~~~iN~~g 81 (89)
+.++....+++++++.++.++|+++
T Consensus 67 KV~P~~VLv~sl~Fi~~Vi~Lhi~~ 91 (96)
T 2wwb_C 67 KVGPVPVLVMSLLFIASVFMLHIWG 91 (96)
T ss_dssp CCSSCSHHHHHHHHHHHHHHHSCSS
T ss_pred EECCEEehhhHHHHHHHHHHHHHhh
Confidence 3344556677888888889998876
No 6
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=32.51 E-value=93 Score=21.42 Aligned_cols=19 Identities=11% Similarity=0.086 Sum_probs=12.9
Q ss_pred hHHHHhCChHHHHHHHHHH
Q psy930 11 YINEAFGPLPAFLYMWVAL 29 (89)
Q Consensus 11 y~~~~~G~~~gf~~gw~~~ 29 (89)
..|..||++.+.+......
T Consensus 93 ~~R~~FG~~Gs~i~~ll~~ 111 (501)
T 2jln_A 93 AARMPFGIRGSLIPITLKA 111 (501)
T ss_dssp HTTTTSCTTTTHHHHHHHH
T ss_pred hhHhhcchhHHHHHHHHHH
Confidence 6777899987766555443
No 7
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=13.33 E-value=3.6e+02 Score=18.92 Aligned_cols=21 Identities=5% Similarity=0.020 Sum_probs=14.9
Q ss_pred chhhhHHHHhCChHHHHHHHH
Q psy930 7 GDYAYINEAFGPLPAFLYMWV 27 (89)
Q Consensus 7 G~y~y~~~~~G~~~gf~~gw~ 27 (89)
..++|.++.||+...-+....
T Consensus 113 T~~e~l~~Rfg~~~~~~~ai~ 133 (593)
T 2xq2_A 113 TIPEFVEKRFNKKLKTILAVF 133 (593)
T ss_dssp SHHHHHHHHTCHHHHHHHHHH
T ss_pred CcHHHHHHHccCchHHHHHHH
Confidence 467889999998766555433
No 8
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=13.13 E-value=3.5e+02 Score=18.67 Aligned_cols=21 Identities=5% Similarity=0.020 Sum_probs=15.3
Q ss_pred chhhhHHHHhCChHHHHHHHH
Q psy930 7 GDYAYINEAFGPLPAFLYMWV 27 (89)
Q Consensus 7 G~y~y~~~~~G~~~gf~~gw~ 27 (89)
-.++|.++.||+...-+....
T Consensus 84 T~~e~l~~Rfg~~~~~~~a~~ 104 (530)
T 3dh4_A 84 TIPEFVEKRFNKKLKTILAVF 104 (530)
T ss_dssp SHHHHHHHHTCHHHHHHHHHH
T ss_pred cHHHHHHHHcCcHHHHHHHHH
Confidence 467899999999876555543
No 9
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=11.94 E-value=1.6e+02 Score=13.99 Aligned_cols=24 Identities=4% Similarity=-0.118 Sum_probs=15.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHh
Q psy930 57 DPPYSAVRLLAAVITCLLTAINCY 80 (89)
Q Consensus 57 ~~~~~~~~~~a~~~~~~~~~iN~~ 80 (89)
..++......+++++.+..++|..
T Consensus 27 Ki~P~~Vl~~si~~i~~V~~L~~~ 50 (53)
T 1rh5_C 27 RVKPEHVIGVTVAFVIIEAILTYG 50 (53)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCeehhhhHHHHHHHHHHHHHH
Confidence 334455556677777778888753
No 10
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=6.12 E-value=3e+02 Score=12.84 Aligned_cols=17 Identities=12% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy930 62 AVRLLAAVITCLLTAIN 78 (89)
Q Consensus 62 ~~~~~a~~~~~~~~~iN 78 (89)
+..+..+++++++++.|
T Consensus 34 ~gt~~~~~~ll~laif~ 50 (51)
T 1m56_D 34 WAAVVIVAALIFLALAN 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHc
Done!