Query psy930
Match_columns 89
No_of_seqs 174 out of 1077
Neff 9.1
Searched_HMMs 13730
Date Fri Aug 16 23:55:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy930.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/930hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ov9a_ a.155.1.1 (A:) H-NS-li 27.9 4 0.00029 17.8 -0.6 13 75-87 5-17 (45)
2 d2e1ba1 b.43.3.6 (A:1-87) AlaX 15.0 22 0.0016 17.3 0.5 7 2-8 38-44 (87)
3 d1lr1a_ a.155.1.1 (A:) H1 prot 9.3 26 0.0019 16.0 -0.3 13 75-87 6-18 (57)
4 d2axte1 f.23.38.1 (E:3-84) Cyt 4.5 1.8E+02 0.013 13.8 1.4 10 20-29 27-36 (82)
5 d1jb0f_ f.23.16.1 (F:) Subunit 3.6 2.7E+02 0.019 14.8 1.7 6 24-29 74-79 (141)
6 d1iwga8 f.35.1.1 (A:513-566,A: 3.2 4.3E+02 0.031 14.3 3.6 21 65-85 64-84 (222)
7 d1dq3a3 d.95.2.2 (A:129-226) P 2.7 2.6E+02 0.019 13.4 0.9 10 10-19 56-65 (98)
8 d2noha1 a.96.1.3 (A:136-325) 8 2.7 4.7E+02 0.034 13.7 2.9 15 11-25 167-181 (190)
9 d2akla2 g.41.3.5 (A:3-40) Hypo 2.6 1.4E+02 0.0099 12.2 -0.2 9 3-11 7-15 (38)
10 d1ak2a2 g.41.2.1 (A:147-176) M 2.5 1.5E+02 0.011 11.3 -0.1 8 3-10 1-8 (30)
No 1
>d1ov9a_ a.155.1.1 (A:) H-NS-like protein VicH {Vibrio cholerae [TaxId: 666]}
Probab=27.94 E-value=4 Score=17.83 Aligned_cols=13 Identities=15% Similarity=-0.008 Sum_probs=10.0
Q ss_pred HHHHHhccchhhc
Q psy930 75 TAINCYNKYHLTC 87 (89)
Q Consensus 75 ~~iN~~gvk~~~~ 87 (89)
+++|+++.|..+|
T Consensus 5 ~llNiRSLRA~~R 17 (45)
T d1ov9a_ 5 TLLNIRSLRAYAR 17 (45)
T ss_dssp HHTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 5678888887765
No 2
>d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=15.01 E-value=22 Score=17.31 Aligned_cols=7 Identities=43% Similarity=1.023 Sum_probs=3.9
Q ss_pred CCCCcch
Q psy930 2 IPKSGGD 8 (89)
Q Consensus 2 ~P~~GG~ 8 (89)
+|++||+
T Consensus 38 YpegGGQ 44 (87)
T d2e1ba1 38 YPTGGGQ 44 (87)
T ss_dssp CCCCTTC
T ss_pred ccCCCCC
Confidence 4556654
No 3
>d1lr1a_ a.155.1.1 (A:) H1 protein (H-NS) {Escherichia coli [TaxId: 562]}
Probab=9.33 E-value=26 Score=15.98 Aligned_cols=13 Identities=8% Similarity=-0.281 Sum_probs=9.5
Q ss_pred HHHHHhccchhhc
Q psy930 75 TAINCYNKYHLTC 87 (89)
Q Consensus 75 ~~iN~~gvk~~~~ 87 (89)
++.|+++.|..+|
T Consensus 6 ~L~NIRsLRA~aR 18 (57)
T d1lr1a_ 6 ILNNIRTLRAQAR 18 (57)
T ss_dssp HTTHHHHHHHHTT
T ss_pred HHHhHHHHHHHHH
Confidence 4578888887765
No 4
>d2axte1 f.23.38.1 (E:3-84) Cytochrome b559 subunit alpha, PsbE {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.51 E-value=1.8e+02 Score=13.82 Aligned_cols=10 Identities=20% Similarity=0.624 Sum_probs=6.5
Q ss_pred HHHHHHHHHH
Q psy930 20 PAFLYMWVAL 29 (89)
Q Consensus 20 ~gf~~gw~~~ 29 (89)
.=|+.||+..
T Consensus 27 slFiaGwlFV 36 (82)
T d2axte1 27 ALFIAGWLFV 36 (82)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhhhhhe
Confidence 3477888754
No 5
>d1jb0f_ f.23.16.1 (F:) Subunit III of photosystem I reaction centre, PsaF {Synechococcus elongatus [TaxId: 32046]}
Probab=3.63 E-value=2.7e+02 Score=14.76 Aligned_cols=6 Identities=17% Similarity=0.634 Sum_probs=2.7
Q ss_pred HHHHHH
Q psy930 24 YMWVAL 29 (89)
Q Consensus 24 ~gw~~~ 29 (89)
.||+.|
T Consensus 74 AGwIGW 79 (141)
T d1jb0f_ 74 AGWIGW 79 (141)
T ss_dssp HHHHHH
T ss_pred hhhhhh
Confidence 444444
No 6
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=3.22 E-value=4.3e+02 Score=14.35 Aligned_cols=21 Identities=10% Similarity=-0.084 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHhccchh
Q psy930 65 LLAAVITCLLTAINCYNKYHL 85 (89)
Q Consensus 65 ~~a~~~~~~~~~iN~~gvk~~ 85 (89)
.++++++.++..+.+++.+..
T Consensus 64 ~la~i~i~liL~~~frS~~~~ 84 (222)
T d1iwga8 64 AISLIVVFLCLAALYESWSIP 84 (222)
T ss_dssp HHHHHHHHHHHHHTTCSSSHH
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 345555555555555665543
No 7
>d1dq3a3 d.95.2.2 (A:129-226) PI-Pfui intein {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=2.73 E-value=2.6e+02 Score=13.37 Aligned_cols=10 Identities=30% Similarity=0.787 Sum_probs=6.0
Q ss_pred hhHHHHhCCh
Q psy930 10 AYINEAFGPL 19 (89)
Q Consensus 10 ~y~~~~~G~~ 19 (89)
.|+++.||+.
T Consensus 56 ~~le~tfgkr 65 (98)
T d1dq3a3 56 DYLEKTFGRK 65 (98)
T ss_dssp HHHHHHHSCC
T ss_pred HHHHHHhccc
Confidence 4566666664
No 8
>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.69 E-value=4.7e+02 Score=13.71 Aligned_cols=15 Identities=13% Similarity=0.523 Sum_probs=8.4
Q ss_pred hHHHHhCChHHHHHH
Q psy930 11 YINEAFGPLPAFLYM 25 (89)
Q Consensus 11 y~~~~~G~~~gf~~g 25 (89)
+.++.||+..|+..-
T Consensus 167 ~~~~~~g~y~g~a~~ 181 (190)
T d2noha1 167 FFRSLWGPYAGWAAA 181 (190)
T ss_dssp HHHHHHCTTHHHHHH
T ss_pred HHHHHhcchhhHHHH
Confidence 344557777655433
No 9
>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=2.61 E-value=1.4e+02 Score=12.17 Aligned_cols=9 Identities=33% Similarity=1.069 Sum_probs=0.0
Q ss_pred CCCcchhhh
Q psy930 3 PKSGGDYAY 11 (89)
Q Consensus 3 P~~GG~y~y 11 (89)
|+-+++|.|
T Consensus 7 P~C~seytY 15 (38)
T d2akla2 7 PQCNSEYTY 15 (38)
T ss_dssp TTTCCCCCE
T ss_pred CCCCCcceE
No 10
>d1ak2a2 g.41.2.1 (A:147-176) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Probab=2.52 E-value=1.5e+02 Score=11.28 Aligned_cols=8 Identities=50% Similarity=1.016 Sum_probs=0.0
Q ss_pred CCCcchhh
Q psy930 3 PKSGGDYA 10 (89)
Q Consensus 3 P~~GG~y~ 10 (89)
|.+|-.|+
T Consensus 1 P~sG~~Yh 8 (30)
T d1ak2a2 1 PQSGRSYH 8 (30)
T ss_dssp TTTCCEEB
T ss_pred CCCCCCcc
Done!