Query psy9305
Match_columns 465
No_of_seqs 455 out of 2605
Neff 8.2
Searched_HMMs 29240
Date Sat Aug 17 00:01:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9305.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9305hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayj_A 50S ribosomal protein L 59.7 3.8 0.00013 28.5 1.5 25 328-352 20-44 (56)
2 2ayj_A 50S ribosomal protein L 58.4 4.6 0.00016 28.1 1.7 29 129-157 17-45 (56)
3 3j21_g 50S ribosomal protein L 56.5 6.1 0.00021 27.0 2.1 28 130-157 13-40 (51)
4 3j21_g 50S ribosomal protein L 52.2 6.7 0.00023 26.8 1.7 25 328-352 15-39 (51)
5 1x4u_A Zinc finger, FYVE domai 49.1 7.8 0.00027 29.3 1.9 25 131-155 14-40 (84)
6 2yw8_A RUN and FYVE domain-con 48.6 6.6 0.00023 29.6 1.5 22 329-350 21-44 (82)
7 1z2q_A LM5-1; membrane protein 47.5 9 0.00031 29.0 2.1 27 130-156 20-48 (84)
8 3zyq_A Hepatocyte growth facto 46.5 6.6 0.00023 35.8 1.4 22 329-350 166-189 (226)
9 1joc_A EEA1, early endosomal a 43.9 9.6 0.00033 31.3 1.8 25 131-155 69-95 (125)
10 3t7l_A Zinc finger FYVE domain 40.6 20 0.00067 27.5 3.1 25 131-155 20-46 (90)
11 2dkt_A Ring finger and CHY zin 37.5 11 0.00039 31.6 1.3 40 130-169 82-125 (143)
12 1vfy_A Phosphatidylinositol-3- 36.1 9.2 0.00031 28.1 0.5 23 133-155 13-37 (73)
13 1dvp_A HRS, hepatocyte growth 32.5 16 0.00055 32.9 1.6 25 132-156 162-188 (220)
14 2dkt_A Ring finger and CHY zin 32.2 8.1 0.00028 32.5 -0.4 40 327-366 83-126 (143)
15 1joc_A EEA1, early endosomal a 31.7 18 0.00062 29.6 1.6 22 329-350 71-94 (125)
16 1wfk_A Zinc finger, FYVE domai 31.5 20 0.00068 27.3 1.7 24 132-155 10-35 (88)
17 1y02_A CARP2, FYVE-ring finger 31.1 13 0.00045 30.2 0.7 24 132-155 20-45 (120)
18 2knc_B Integrin beta-3; transm 30.9 64 0.0022 24.0 4.4 37 226-262 16-52 (79)
19 1twf_L ABC10-alpha, DNA-direct 29.1 34 0.0012 24.9 2.5 29 324-352 25-56 (70)
20 2cr8_A MDM4 protein; ZF-ranbp 27.6 25 0.00084 23.8 1.4 22 132-153 12-33 (53)
21 1dvp_A HRS, hepatocyte growth 26.2 22 0.00074 32.0 1.3 23 329-351 163-187 (220)
22 2c6a_A Ubiquitin-protein ligas 26.0 27 0.00093 23.1 1.3 22 132-153 14-35 (46)
23 3zyq_A Hepatocyte growth facto 25.8 23 0.00079 32.1 1.4 25 132-156 165-191 (226)
No 1
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=59.72 E-value=3.8 Score=28.45 Aligned_cols=25 Identities=32% Similarity=0.680 Sum_probs=21.6
Q ss_pred ecCCCCCCCCCCCCCCCcccccccc
Q psy9305 328 FKCPKCCCIKPERAHHCSVCQRCIR 352 (465)
Q Consensus 328 ~~c~~c~~~~p~r~~hc~~c~~cv~ 352 (465)
..|..|...-|+|+..|+.||..-+
T Consensus 20 ~ICrkC~ARnp~~A~~CRKCg~~~L 44 (56)
T 2ayj_A 20 KVCRKCGALNPIRATKCRRCHSTNL 44 (56)
T ss_dssp EEETTTCCEECTTCSSCTTTCCCCE
T ss_pred hhhccccCcCCcccccccCCCCCCC
Confidence 4699999999999999999986543
No 2
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=58.44 E-value=4.6 Score=28.07 Aligned_cols=29 Identities=28% Similarity=0.584 Sum_probs=23.8
Q ss_pred cceeeCCCCCccCCCCCccCccccccccc
Q psy9305 129 QVIFKCPKCCCIKPERAHHCSVCQRCIRK 157 (465)
Q Consensus 129 ~~~~~C~~C~~~kP~Rs~HC~~C~~CV~~ 157 (465)
-....|..|...-|+|+..|+.|+.--+|
T Consensus 17 ~~k~ICrkC~ARnp~~A~~CRKCg~~~LR 45 (56)
T 2ayj_A 17 FLKKVCRKCGALNPIRATKCRRCHSTNLR 45 (56)
T ss_dssp CCCEEETTTCCEECTTCSSCTTTCCCCEE
T ss_pred hchhhhccccCcCCcccccccCCCCCCCC
Confidence 34578999999999999999998865443
No 3
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=56.50 E-value=6.1 Score=27.01 Aligned_cols=28 Identities=21% Similarity=0.491 Sum_probs=23.7
Q ss_pred ceeeCCCCCccCCCCCccCccccccccc
Q psy9305 130 VIFKCPKCCCIKPERAHHCSVCQRCIRK 157 (465)
Q Consensus 130 ~~~~C~~C~~~kP~Rs~HC~~C~~CV~~ 157 (465)
....|..|...-|+++..|+.||.--++
T Consensus 13 ~k~iCpkC~a~~~~gaw~CrKCG~~~lr 40 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKKCRKCGYKRLR 40 (51)
T ss_dssp SEEECTTTCCEECTTCSSCSSSSSCCCE
T ss_pred CCccCCCCCCcCCCCceecCCCCCcccc
Confidence 4578999999999999999999875443
No 4
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=52.18 E-value=6.7 Score=26.81 Aligned_cols=25 Identities=24% Similarity=0.565 Sum_probs=21.5
Q ss_pred ecCCCCCCCCCCCCCCCcccccccc
Q psy9305 328 FKCPKCCCIKPERAHHCSVCQRCIR 352 (465)
Q Consensus 328 ~~c~~c~~~~p~r~~hc~~c~~cv~ 352 (465)
..|..|....|.++..|+.||.--+
T Consensus 15 ~iCpkC~a~~~~gaw~CrKCG~~~l 39 (51)
T 3j21_g 15 YVCLRCGATNPWGAKKCRKCGYKRL 39 (51)
T ss_dssp EECTTTCCEECTTCSSCSSSSSCCC
T ss_pred ccCCCCCCcCCCCceecCCCCCccc
Confidence 3599999999999999999987533
No 5
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.14 E-value=7.8 Score=29.33 Aligned_cols=25 Identities=20% Similarity=0.557 Sum_probs=17.7
Q ss_pred eeeCCCCCcc--CCCCCccCccccccc
Q psy9305 131 IFKCPKCCCI--KPERAHHCSVCQRCI 155 (465)
Q Consensus 131 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 155 (465)
...|..|+.. --.|-|||+.||+-+
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vf 40 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSF 40 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEE
Confidence 3468888632 346889999998743
No 6
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=48.59 E-value=6.6 Score=29.59 Aligned_cols=22 Identities=32% Similarity=0.736 Sum_probs=16.3
Q ss_pred cCCCCCCCC--CCCCCCCcccccc
Q psy9305 329 KCPKCCCIK--PERAHHCSVCQRC 350 (465)
Q Consensus 329 ~c~~c~~~~--p~r~~hc~~c~~c 350 (465)
.|..|+..= -.|-|||+.||+-
T Consensus 21 ~C~~C~~~Fs~~~RrHHCR~CG~v 44 (82)
T 2yw8_A 21 HCRQCEKEFSISRRKHHCRNCGHI 44 (82)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCE
T ss_pred cccCcCCcccCccccccCCCCCCE
Confidence 488887632 3578999999874
No 7
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=47.46 E-value=9 Score=28.99 Aligned_cols=27 Identities=30% Similarity=0.722 Sum_probs=18.5
Q ss_pred ceeeCCCCCcc--CCCCCccCcccccccc
Q psy9305 130 VIFKCPKCCCI--KPERAHHCSVCQRCIR 156 (465)
Q Consensus 130 ~~~~C~~C~~~--kP~Rs~HC~~C~~CV~ 156 (465)
....|..|+.. --.|-|||+.||+-+-
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C 48 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLC 48 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEEC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEC
Confidence 34569888632 2358899999987543
No 8
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=46.46 E-value=6.6 Score=35.78 Aligned_cols=22 Identities=32% Similarity=0.850 Sum_probs=15.8
Q ss_pred cCCCCCCC--CCCCCCCCcccccc
Q psy9305 329 KCPKCCCI--KPERAHHCSVCQRC 350 (465)
Q Consensus 329 ~c~~c~~~--~p~r~~hc~~c~~c 350 (465)
.|..|+.. --.|-|||+.||+.
T Consensus 166 ~C~~C~~~F~~~~RrhHCR~CG~v 189 (226)
T 3zyq_A 166 ECHRCRVQFGVMTRKHHCRACGQI 189 (226)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCE
T ss_pred CCcCcCCCCCccccccccCCCcCE
Confidence 38888742 23477999999875
No 9
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=43.87 E-value=9.6 Score=31.27 Aligned_cols=25 Identities=28% Similarity=0.604 Sum_probs=18.1
Q ss_pred eeeCCCCCcc--CCCCCccCccccccc
Q psy9305 131 IFKCPKCCCI--KPERAHHCSVCQRCI 155 (465)
Q Consensus 131 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 155 (465)
...|..|... --.|-|||+.||+-+
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vf 95 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIF 95 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEE
Confidence 4569999742 245889999998754
No 10
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=40.65 E-value=20 Score=27.46 Aligned_cols=25 Identities=28% Similarity=0.745 Sum_probs=17.4
Q ss_pred eeeCCCCCc-c-CCCCCccCccccccc
Q psy9305 131 IFKCPKCCC-I-KPERAHHCSVCQRCI 155 (465)
Q Consensus 131 ~~~C~~C~~-~-kP~Rs~HC~~C~~CV 155 (465)
...|..|.. + --.|-|||+.||+-+
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~ 46 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVF 46 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEE
Confidence 346888863 2 234789999998754
No 11
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=37.45 E-value=11 Score=31.58 Aligned_cols=40 Identities=25% Similarity=0.567 Sum_probs=26.0
Q ss_pred ceeeCCCCCccCCCC-CccCccccccccc---cCccCccccccc
Q psy9305 130 VIFKCPKCCCIKPER-AHHCSVCQRCIRK---MDHHCPWVNNCV 169 (465)
Q Consensus 130 ~~~~C~~C~~~kP~R-s~HC~~C~~CV~~---~DHHCpWi~nCI 169 (465)
...||..|+.+.+++ ..||..||-|... -=-||.==|.|+
T Consensus 82 ~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~ 125 (143)
T 2dkt_A 82 GEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCL 125 (143)
T ss_dssp CSEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEE
T ss_pred eeeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeee
Confidence 346899999886654 3788888887765 123555555554
No 12
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=36.14 E-value=9.2 Score=28.07 Aligned_cols=23 Identities=30% Similarity=0.680 Sum_probs=16.8
Q ss_pred eCCCCCcc--CCCCCccCccccccc
Q psy9305 133 KCPKCCCI--KPERAHHCSVCQRCI 155 (465)
Q Consensus 133 ~C~~C~~~--kP~Rs~HC~~C~~CV 155 (465)
.|..|+.. --.|-|||+.||+-+
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGVF 37 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred cccCCCCccCCccccccCCCCCEEE
Confidence 58888632 235889999998754
No 13
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=32.49 E-value=16 Score=32.92 Aligned_cols=25 Identities=28% Similarity=0.650 Sum_probs=17.7
Q ss_pred eeCCCCCcc--CCCCCccCcccccccc
Q psy9305 132 FKCPKCCCI--KPERAHHCSVCQRCIR 156 (465)
Q Consensus 132 ~~C~~C~~~--kP~Rs~HC~~C~~CV~ 156 (465)
..|..|... --.|-|||+.||+.+-
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~C 188 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVFC 188 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEEC
T ss_pred CccCCCCCccCCcccccccCCcCCEEC
Confidence 468888632 2358899999988544
No 14
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=32.17 E-value=8.1 Score=32.46 Aligned_cols=40 Identities=25% Similarity=0.582 Sum_probs=27.0
Q ss_pred eecCCCCCCCCCCCC-CCCccccccccC---ccccccccccccc
Q psy9305 327 IFKCPKCCCIKPERA-HHCSVCQRCIRK---MDHHCPWVNNCVG 366 (465)
Q Consensus 327 ~~~c~~c~~~~p~r~-~hc~~c~~cv~~---~dhhc~~~~~cig 366 (465)
..+|..|+.+.+.+. .||..||-|..+ -=-||.--|.|+.
T Consensus 83 ~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s 126 (143)
T 2dkt_A 83 EYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLT 126 (143)
T ss_dssp SEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEE
T ss_pred eeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeeec
Confidence 346888888765544 788888888765 2246777777754
No 15
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=31.68 E-value=18 Score=29.56 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=16.3
Q ss_pred cCCCCCCCC--CCCCCCCcccccc
Q psy9305 329 KCPKCCCIK--PERAHHCSVCQRC 350 (465)
Q Consensus 329 ~c~~c~~~~--p~r~~hc~~c~~c 350 (465)
.|..|+..= -.|-|||+.||+-
T Consensus 71 ~C~~C~~~Fs~~~RrHHCR~CG~v 94 (125)
T 1joc_A 71 NCMACGKGFSVTVRRHHCRQCGNI 94 (125)
T ss_dssp BCTTTCCBCCSSSCCEECTTTCCE
T ss_pred CCcCcCCccccccccccCCCCCeE
Confidence 488887632 3578999999874
No 16
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=31.50 E-value=20 Score=27.34 Aligned_cols=24 Identities=21% Similarity=0.523 Sum_probs=17.2
Q ss_pred eeCCCCCcc--CCCCCccCccccccc
Q psy9305 132 FKCPKCCCI--KPERAHHCSVCQRCI 155 (465)
Q Consensus 132 ~~C~~C~~~--kP~Rs~HC~~C~~CV 155 (465)
..|..|+.. --.|-|||+.||+-+
T Consensus 10 ~~C~~C~~~F~~~~RrHHCR~CG~vf 35 (88)
T 1wfk_A 10 SRCYGCAVKFTLFKKEYGCKNCGRAF 35 (88)
T ss_dssp SBCTTTCCBCCSSSCEEECSSSCCEE
T ss_pred CCCcCcCCcccCccccccCCCCCCEE
Confidence 358888642 246889999998743
No 17
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=31.09 E-value=13 Score=30.24 Aligned_cols=24 Identities=21% Similarity=0.636 Sum_probs=17.2
Q ss_pred eeCCCCCc-c-CCCCCccCccccccc
Q psy9305 132 FKCPKCCC-I-KPERAHHCSVCQRCI 155 (465)
Q Consensus 132 ~~C~~C~~-~-kP~Rs~HC~~C~~CV 155 (465)
..|..|.. + -..|-|||+.||+.+
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~if 45 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNF 45 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEE
T ss_pred CcccCcCCccccccccccCCCCCCee
Confidence 35888863 2 245889999998843
No 18
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=30.91 E-value=64 Score=24.02 Aligned_cols=37 Identities=16% Similarity=0.219 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchHHHhhhhhh
Q psy9305 226 VFEALLFAIFTTVMLLSQLQAIWNDETGIEQLKKEEA 262 (465)
Q Consensus 226 ~~~~~~~~~~~~~l~~~~l~~i~~n~Tt~E~~~~~~~ 262 (465)
.+.+.++++.+..++++.+.....++-..+++++++.
T Consensus 16 gvi~gilliGllllliwk~~~~i~DrrE~~kFEkE~~ 52 (79)
T 2knc_B 16 SVMGAILLIGLAALLIWKLLITIHDRKEFAKFEEERA 52 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444555667776666666666666665543
No 19
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=29.10 E-value=34 Score=24.93 Aligned_cols=29 Identities=21% Similarity=0.518 Sum_probs=20.4
Q ss_pred cceeecCCCCCCC---CCCCCCCCcccccccc
Q psy9305 324 GQVIFKCPKCCCI---KPERAHHCSVCQRCIR 352 (465)
Q Consensus 324 ~~~~~~c~~c~~~---~p~r~~hc~~c~~cv~ 352 (465)
..+...|..|+.. ++..+-||+.||.-|+
T Consensus 25 ~~v~Y~C~~CG~~~e~~~~d~irCp~CG~RIL 56 (70)
T 1twf_L 25 ATLKYICAECSSKLSLSRTDAVRCKDCGHRIL 56 (70)
T ss_dssp CCCCEECSSSCCEECCCTTSTTCCSSSCCCCC
T ss_pred ceEEEECCCCCCcceeCCCCCccCCCCCceEe
Confidence 3445569999875 4455789999998554
No 20
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=27.59 E-value=25 Score=23.82 Aligned_cols=22 Identities=18% Similarity=0.579 Sum_probs=17.9
Q ss_pred eeCCCCCccCCCCCccCccccc
Q psy9305 132 FKCPKCCCIKPERAHHCSVCQR 153 (465)
Q Consensus 132 ~~C~~C~~~kP~Rs~HC~~C~~ 153 (465)
-.|.+|+..-||-..||..|-.
T Consensus 12 WkC~~C~k~N~Pl~ryC~rCwa 33 (53)
T 2cr8_A 12 WQCTECKKFNSPSKRYCFRCWA 33 (53)
T ss_dssp EECSSSCCEECSSCCBCTTTCC
T ss_pred eecccccccCCCccchhHHHHH
Confidence 3599999999998888887754
No 21
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=26.21 E-value=22 Score=32.05 Aligned_cols=23 Identities=30% Similarity=0.784 Sum_probs=16.7
Q ss_pred cCCCCCCCC--CCCCCCCccccccc
Q psy9305 329 KCPKCCCIK--PERAHHCSVCQRCI 351 (465)
Q Consensus 329 ~c~~c~~~~--p~r~~hc~~c~~cv 351 (465)
.|..|+..= -.|-|||+.||+-+
T Consensus 163 ~C~~C~~~F~~~~rrhhCr~CG~v~ 187 (220)
T 1dvp_A 163 VCHRCRVEFTFTNRKHHCRNCGQVF 187 (220)
T ss_dssp BCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred ccCCCCCccCCcccccccCCcCCEE
Confidence 499897532 35789999998753
No 22
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=25.96 E-value=27 Score=23.10 Aligned_cols=22 Identities=32% Similarity=0.880 Sum_probs=18.1
Q ss_pred eeCCCCCccCCCCCccCccccc
Q psy9305 132 FKCPKCCCIKPERAHHCSVCQR 153 (465)
Q Consensus 132 ~~C~~C~~~kP~Rs~HC~~C~~ 153 (465)
-.|.+|+..-||-..||..|-.
T Consensus 14 WkC~~C~~~N~Pl~r~C~rCw~ 35 (46)
T 2c6a_A 14 WKCTSCNEMNPPLPSHCNRCWA 35 (46)
T ss_dssp EECTTTCCEECSSCSSCTTTCC
T ss_pred EecccccccCCCccchhhHHHh
Confidence 3599999999999889887744
No 23
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=25.82 E-value=23 Score=32.09 Aligned_cols=25 Identities=28% Similarity=0.727 Sum_probs=17.1
Q ss_pred eeCCCCCc-cC-CCCCccCcccccccc
Q psy9305 132 FKCPKCCC-IK-PERAHHCSVCQRCIR 156 (465)
Q Consensus 132 ~~C~~C~~-~k-P~Rs~HC~~C~~CV~ 156 (465)
..|..|.. +. --|-|||+.||+.+-
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~C 191 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIFC 191 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEEC
T ss_pred CCCcCcCCCCCccccccccCCCcCEeC
Confidence 36888862 22 347799999988543
Done!