Query psy9305
Match_columns 465
No_of_seqs 455 out of 2605
Neff 8.2
Searched_HMMs 13730
Date Sat Aug 17 00:02:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9305.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9305hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ayja1 g.41.8.7 (A:1-56) Ribo 78.1 0.43 3.2E-05 31.3 1.6 22 328-349 20-41 (56)
2 d2ayja1 g.41.8.7 (A:1-56) Ribo 71.7 0.76 5.6E-05 30.1 1.5 24 130-153 18-41 (56)
3 d1joca1 g.50.1.1 (A:1348-1411) 58.4 2.1 0.00015 29.0 1.8 26 131-156 8-35 (64)
4 d1vfya_ g.50.1.1 (A:) vps27p p 52.9 2.4 0.00018 29.0 1.4 24 133-156 7-32 (67)
5 d2dmda2 g.37.1.1 (A:8-33) Zinc 49.9 1.7 0.00012 23.1 0.1 14 146-159 2-15 (26)
6 d2dkta2 g.93.1.1 (A:82-137) RI 48.6 1.5 0.00011 28.9 -0.3 15 338-352 31-45 (56)
7 d2dkta2 g.93.1.1 (A:82-137) RI 46.1 0.81 5.9E-05 30.2 -2.0 40 328-367 3-46 (56)
8 d1njqa_ g.37.1.3 (A:) SUPERMAN 43.2 3.3 0.00024 24.7 0.7 13 142-154 2-14 (37)
9 d2c6aa1 g.41.11.1 (A:290-335) 42.1 4.8 0.00035 25.0 1.3 20 132-151 14-33 (46)
10 d1dvpa2 g.50.1.1 (A:149-220) H 41.7 5 0.00036 27.7 1.6 24 133-156 15-40 (72)
11 d2adra2 g.37.1.1 (A:131-161) A 37.4 2.8 0.0002 23.6 -0.3 14 146-159 2-15 (31)
12 d2c6aa1 g.41.11.1 (A:290-335) 35.7 6.4 0.00047 24.4 1.2 19 329-347 15-33 (46)
13 d1wfka_ g.50.1.1 (A:) Zinc fin 35.4 6.1 0.00044 28.5 1.2 25 131-155 9-35 (88)
14 d2cr8a1 g.41.11.1 (A:8-48) MDM 34.5 7.8 0.00057 23.4 1.4 20 133-152 6-25 (41)
15 d2pg3a1 c.26.2.1 (A:1-230) Que 33.6 4.6 0.00033 34.2 0.3 23 133-157 184-206 (230)
16 d1olza3 g.16.2.1 (A:481-536) S 33.0 3.2 0.00023 27.3 -0.7 23 149-171 6-31 (56)
17 d1y02a2 g.50.1.1 (A:20-70) Rif 24.5 7.9 0.00057 24.7 0.1 13 143-155 14-26 (51)
18 d2pg3a1 c.26.2.1 (A:1-230) Que 23.9 8.7 0.00063 32.2 0.4 22 330-353 185-206 (230)
19 d2dlqa2 g.37.1.1 (A:35-62) GLI 21.6 14 0.001 19.7 0.7 12 146-157 2-13 (28)
20 d1q5wa_ g.41.11.1 (A:) Npl4 {R 21.3 21 0.0015 19.7 1.5 21 132-152 7-27 (31)
No 1
>d2ayja1 g.41.8.7 (A:1-56) Ribosomal protein L40e {Sulfolobus solfataricus [TaxId: 2287]}
Probab=78.13 E-value=0.43 Score=31.31 Aligned_cols=22 Identities=36% Similarity=0.856 Sum_probs=19.8
Q ss_pred ecCCCCCCCCCCCCCCCccccc
Q psy9305 328 FKCPKCCCIKPERAHHCSVCQR 349 (465)
Q Consensus 328 ~~c~~c~~~~p~r~~hc~~c~~ 349 (465)
..|..|...-|+|+..|+.||.
T Consensus 20 ~ICrkC~AR~p~rAt~CRKCg~ 41 (56)
T d2ayja1 20 KVCRKCGALNPIRATKCRRCHS 41 (56)
T ss_dssp EEETTTCCEECTTCSSCTTTCC
T ss_pred HHHhhccccCCccccccccCCC
Confidence 4599999999999999998875
No 2
>d2ayja1 g.41.8.7 (A:1-56) Ribosomal protein L40e {Sulfolobus solfataricus [TaxId: 2287]}
Probab=71.74 E-value=0.76 Score=30.09 Aligned_cols=24 Identities=33% Similarity=0.780 Sum_probs=21.3
Q ss_pred ceeeCCCCCccCCCCCccCccccc
Q psy9305 130 VIFKCPKCCCIKPERAHHCSVCQR 153 (465)
Q Consensus 130 ~~~~C~~C~~~kP~Rs~HC~~C~~ 153 (465)
....|..|...-|+|+..|+.|+.
T Consensus 18 ~k~ICrkC~AR~p~rAt~CRKCg~ 41 (56)
T d2ayja1 18 LKKVCRKCGALNPIRATKCRRCHS 41 (56)
T ss_dssp CCEEETTTCCEECTTCSSCTTTCC
T ss_pred hhHHHhhccccCCccccccccCCC
Confidence 457899999999999999998875
No 3
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.36 E-value=2.1 Score=29.02 Aligned_cols=26 Identities=27% Similarity=0.588 Sum_probs=18.1
Q ss_pred eeeCCCCCc--cCCCCCccCcccccccc
Q psy9305 131 IFKCPKCCC--IKPERAHHCSVCQRCIR 156 (465)
Q Consensus 131 ~~~C~~C~~--~kP~Rs~HC~~C~~CV~ 156 (465)
...|..|+. ---.|-|||+.||+.+=
T Consensus 8 ~~~C~~C~~~F~~~~rrHHCR~CG~v~C 35 (64)
T d1joca1 8 VQNCMACGKGFSVTVRRHHCRQCGNIFC 35 (64)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEEC
T ss_pred CCcCcCcCCcccCCccccchhhhCCeec
Confidence 345888853 22357899999998654
No 4
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=52.93 E-value=2.4 Score=28.98 Aligned_cols=24 Identities=29% Similarity=0.625 Sum_probs=17.5
Q ss_pred eCCCCCc--cCCCCCccCcccccccc
Q psy9305 133 KCPKCCC--IKPERAHHCSVCQRCIR 156 (465)
Q Consensus 133 ~C~~C~~--~kP~Rs~HC~~C~~CV~ 156 (465)
-|..|+. ---.|-|||+.||+-+-
T Consensus 7 ~C~~C~~~F~~~~rkhhCr~CG~~fC 32 (67)
T d1vfya_ 7 ACMICSKKFSLLNRKHHCRSCGGVFC 32 (67)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEEC
T ss_pred ccccCCCcccCcccccccccCCCEec
Confidence 3888863 23468899999998654
No 5
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.91 E-value=1.7 Score=23.12 Aligned_cols=14 Identities=43% Similarity=1.265 Sum_probs=11.7
Q ss_pred ccCccccccccccC
Q psy9305 146 HHCSVCQRCIRKMD 159 (465)
Q Consensus 146 ~HC~~C~~CV~~~D 159 (465)
|.|..|++|..|-|
T Consensus 2 hkc~~c~kcfsrkd 15 (26)
T d2dmda2 2 HKCEVCGKCFSRKD 15 (26)
T ss_dssp CCBTTTTBCCCCHH
T ss_pred CccchhhhHhcchh
Confidence 67999999988766
No 6
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=48.57 E-value=1.5 Score=28.87 Aligned_cols=15 Identities=33% Similarity=0.846 Sum_probs=8.0
Q ss_pred CCCCCCCcccccccc
Q psy9305 338 PERAHHCSVCQRCIR 352 (465)
Q Consensus 338 p~r~~hc~~c~~cv~ 352 (465)
.+.-.||..|+.|+.
T Consensus 31 ~~~ffHC~~C~~C~~ 45 (56)
T d2dkta2 31 KEDFFHCLKCNLCLT 45 (56)
T ss_dssp GGGEEEETTTTEEEE
T ss_pred CccccccCccccccC
Confidence 334456666666653
No 7
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=46.12 E-value=0.81 Score=30.23 Aligned_cols=40 Identities=25% Similarity=0.607 Sum_probs=30.5
Q ss_pred ecCCCCCCCCCCC-CCCCccccccccC---cccccccccccccC
Q psy9305 328 FKCPKCCCIKPER-AHHCSVCQRCIRK---MDHHCPWVNNCVGE 367 (465)
Q Consensus 328 ~~c~~c~~~~p~r-~~hc~~c~~cv~~---~dhhc~~~~~cig~ 367 (465)
.+|..|+.+-..+ ..||..||-|... -=-||.--+.|+..
T Consensus 3 YfC~iC~l~dddk~~yHC~~CgiCRvG~~~~ffHC~~C~~C~~~ 46 (56)
T d2dkta2 3 YYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLTT 46 (56)
T ss_dssp EECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEEG
T ss_pred eECCcCCcccCCCCcccCCCCCceeecCCccccccCccccccCc
Confidence 4699998875443 4899999999854 33589999988854
No 8
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=43.22 E-value=3.3 Score=24.71 Aligned_cols=13 Identities=46% Similarity=0.996 Sum_probs=11.1
Q ss_pred CCCCccCcccccc
Q psy9305 142 PERAHHCSVCQRC 154 (465)
Q Consensus 142 P~Rs~HC~~C~~C 154 (465)
|+|.+-|+.|++-
T Consensus 2 p~r~~~C~~C~k~ 14 (37)
T d1njqa_ 2 PPRSYTCSFCKRE 14 (37)
T ss_dssp CSSSEECTTTCCE
T ss_pred CCCccCCCCCCCc
Confidence 7899999999873
No 9
>d2c6aa1 g.41.11.1 (A:290-335) MDM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.08 E-value=4.8 Score=24.97 Aligned_cols=20 Identities=35% Similarity=1.022 Sum_probs=17.5
Q ss_pred eeCCCCCccCCCCCccCccc
Q psy9305 132 FKCPKCCCIKPERAHHCSVC 151 (465)
Q Consensus 132 ~~C~~C~~~kP~Rs~HC~~C 151 (465)
-.|.+|+..-||-..||..|
T Consensus 14 WkC~~C~~~N~Pl~ryC~rC 33 (46)
T d2c6aa1 14 WKCTSCNEMNPPLPSHCNRC 33 (46)
T ss_dssp EECTTTCCEECSSCSSCTTT
T ss_pred ccCccccccCCcchhHhHHH
Confidence 35999999999999999877
No 10
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=41.71 E-value=5 Score=27.73 Aligned_cols=24 Identities=29% Similarity=0.750 Sum_probs=17.8
Q ss_pred eCCCCCc--cCCCCCccCcccccccc
Q psy9305 133 KCPKCCC--IKPERAHHCSVCQRCIR 156 (465)
Q Consensus 133 ~C~~C~~--~kP~Rs~HC~~C~~CV~ 156 (465)
.|..|+. ---.|-|||+.||+.+-
T Consensus 15 ~C~~C~~~F~~~~rrhhCr~CG~~~C 40 (72)
T d1dvpa2 15 VCHRCRVEFTFTNRKHHCRNCGQVFC 40 (72)
T ss_dssp BCTTTCCBCCSSSCCEECTTTCCEEC
T ss_pred ccccCCCcccCccccccccccCCeeC
Confidence 4888863 23468899999998654
No 11
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}
Probab=37.36 E-value=2.8 Score=23.59 Aligned_cols=14 Identities=29% Similarity=0.816 Sum_probs=12.0
Q ss_pred ccCccccccccccC
Q psy9305 146 HHCSVCQRCIRKMD 159 (465)
Q Consensus 146 ~HC~~C~~CV~~~D 159 (465)
..|..|+||-.|.|
T Consensus 2 f~C~~C~R~FaRrD 15 (31)
T d2adra2 2 YPCGLCNRAFTRRD 15 (31)
T ss_dssp EECTTTCCEESSHH
T ss_pred cccccccchhhHHH
Confidence 47999999998877
No 12
>d2c6aa1 g.41.11.1 (A:290-335) MDM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.68 E-value=6.4 Score=24.38 Aligned_cols=19 Identities=37% Similarity=1.013 Sum_probs=16.4
Q ss_pred cCCCCCCCCCCCCCCCccc
Q psy9305 329 KCPKCCCIKPERAHHCSVC 347 (465)
Q Consensus 329 ~c~~c~~~~p~r~~hc~~c 347 (465)
.|.+|+..-||-..||..|
T Consensus 15 kC~~C~~~N~Pl~ryC~rC 33 (46)
T d2c6aa1 15 KCTSCNEMNPPLPSHCNRC 33 (46)
T ss_dssp ECTTTCCEECSSCSSCTTT
T ss_pred cCccccccCCcchhHhHHH
Confidence 3999999999988898876
No 13
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=35.41 E-value=6.1 Score=28.46 Aligned_cols=25 Identities=20% Similarity=0.486 Sum_probs=17.8
Q ss_pred eeeCCCCCc--cCCCCCccCccccccc
Q psy9305 131 IFKCPKCCC--IKPERAHHCSVCQRCI 155 (465)
Q Consensus 131 ~~~C~~C~~--~kP~Rs~HC~~C~~CV 155 (465)
...|..|+. ----|-|||+.||+.+
T Consensus 9 ~s~C~~C~~~Fs~~~rrhhCr~CG~vf 35 (88)
T d1wfka_ 9 ESRCYGCAVKFTLFKKEYGCKNCGRAF 35 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEE
T ss_pred cCcCcccCchhccccccccccccChhh
Confidence 345888863 2245789999999854
No 14
>d2cr8a1 g.41.11.1 (A:8-48) MDM4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.52 E-value=7.8 Score=23.35 Aligned_cols=20 Identities=20% Similarity=0.587 Sum_probs=16.9
Q ss_pred eCCCCCccCCCCCccCcccc
Q psy9305 133 KCPKCCCIKPERAHHCSVCQ 152 (465)
Q Consensus 133 ~C~~C~~~kP~Rs~HC~~C~ 152 (465)
.|.+|+..-||=..||..|=
T Consensus 6 kC~~C~~~N~Pl~ryC~rCW 25 (41)
T d2cr8a1 6 QCTECKKFNSPSKRYCFRCW 25 (41)
T ss_dssp ECSSSCCEECSSCCBCTTTC
T ss_pred ecCcccccCCcchhHHHHHH
Confidence 49999999999999988763
No 15
>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]}
Probab=33.56 E-value=4.6 Score=34.17 Aligned_cols=23 Identities=17% Similarity=0.556 Sum_probs=18.9
Q ss_pred eCCCCCccCCCCCccCccccccccc
Q psy9305 133 KCPKCCCIKPERAHHCSVCQRCIRK 157 (465)
Q Consensus 133 ~C~~C~~~kP~Rs~HC~~C~~CV~~ 157 (465)
.-.+| ++|.|.+||-.|..|+.|
T Consensus 184 ~T~SC--y~~~~~~~CG~C~~C~~R 206 (230)
T d2pg3a1 184 HTLTC--YNGIKGDGCGQCAACHLR 206 (230)
T ss_dssp HCCCC--TTSCCTTTTSCSHHHHHH
T ss_pred ccCCC--CCCCCCCCCCCCHhHHHH
Confidence 34566 678889999999999987
No 16
>d1olza3 g.16.2.1 (A:481-536) Semaphorin 4d {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.95 E-value=3.2 Score=27.30 Aligned_cols=23 Identities=30% Similarity=0.910 Sum_probs=18.7
Q ss_pred ccccccccccCccCccc---cccccc
Q psy9305 149 SVCQRCIRKMDHHCPWV---NNCVGE 171 (465)
Q Consensus 149 ~~C~~CV~~~DHHCpWi---~nCIG~ 171 (465)
+.|+.||.-.|-||.|= +.|+-.
T Consensus 6 ~sC~~C~~a~DPyCgW~~~~~~C~~~ 31 (56)
T d1olza3 6 GTCEDCVLARDPYCAWSPPTATCVAL 31 (56)
T ss_dssp CSHHHHHHTTCTTEEEETTTTEEEET
T ss_pred ccHHHHHcCCCCcCcccCCCCCeecC
Confidence 46899999999999994 667754
No 17
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.53 E-value=7.9 Score=24.72 Aligned_cols=13 Identities=23% Similarity=0.682 Sum_probs=10.2
Q ss_pred CCCccCccccccc
Q psy9305 143 ERAHHCSVCQRCI 155 (465)
Q Consensus 143 ~Rs~HC~~C~~CV 155 (465)
.|-|||+.||+-+
T Consensus 14 ~rkhhCr~CG~~f 26 (51)
T d1y02a2 14 ARKQTCLDCKKNF 26 (51)
T ss_dssp GGCEECTTTCCEE
T ss_pred ccCcccccCCccc
Confidence 4779999998843
No 18
>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]}
Probab=23.95 E-value=8.7 Score=32.24 Aligned_cols=22 Identities=18% Similarity=0.572 Sum_probs=17.6
Q ss_pred CCCCCCCCCCCCCCCccccccccC
Q psy9305 330 CPKCCCIKPERAHHCSVCQRCIRK 353 (465)
Q Consensus 330 c~~c~~~~p~r~~hc~~c~~cv~~ 353 (465)
-.+| +++.+.+||-.|..|+.|
T Consensus 185 T~SC--y~~~~~~~CG~C~~C~~R 206 (230)
T d2pg3a1 185 TLTC--YNGIKGDGCGQCAACHLR 206 (230)
T ss_dssp CCCC--TTSCCTTTTSCSHHHHHH
T ss_pred cCCC--CCCCCCCCCCCCHhHHHH
Confidence 4455 577888999999999877
No 19
>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.58 E-value=14 Score=19.70 Aligned_cols=12 Identities=25% Similarity=0.944 Sum_probs=9.2
Q ss_pred ccCccccccccc
Q psy9305 146 HHCSVCQRCIRK 157 (465)
Q Consensus 146 ~HC~~C~~CV~~ 157 (465)
..|..|++|..|
T Consensus 2 f~c~kcgkcyfr 13 (28)
T d2dlqa2 2 FECPKCGKCYFR 13 (28)
T ss_dssp CBCTTTCCBCSS
T ss_pred Cccccchhhhhh
Confidence 358888998776
No 20
>d1q5wa_ g.41.11.1 (A:) Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=21.32 E-value=21 Score=19.71 Aligned_cols=21 Identities=24% Similarity=0.906 Sum_probs=17.5
Q ss_pred eeCCCCCccCCCCCccCcccc
Q psy9305 132 FKCPKCCCIKPERAHHCSVCQ 152 (465)
Q Consensus 132 ~~C~~C~~~kP~Rs~HC~~C~ 152 (465)
--|..|-..-.|-+-||..|+
T Consensus 7 WsC~HCTf~N~pgtd~CeMC~ 27 (31)
T d1q5wa_ 7 WACQHCTFMNQPGTGHCEMCS 27 (31)
T ss_dssp EECSSSCCEECTTCSBCTTTC
T ss_pred eEeeeeeeecCCCCCcchhhc
Confidence 358999888889999998885
Done!