RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9305
(465 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 1e-04
Identities = 64/430 (14%), Positives = 104/430 (24%), Gaps = 167/430 (38%)
Query: 39 GMVWCIKDICGVICAIL-----TWLLILYAEFVVMAVMLIPNPHPMYRFFNMALFQTFAF 93
G + G++ A+ +W F V I LF F
Sbjct: 269 GATGHSQ---GLVTAVAIAETDSW-----ESFFVSVRKAI-----------TVLF----F 305
Query: 94 LAFASHLRAMLTDPGAVPKGNATTEIIQQ-MGFREGQVIFKCPKCCCIKPERAHHCSVCQ 152
+ + A P + I++ + EG P + Q
Sbjct: 306 IGVRCYE--------AYPNTSLPPSILEDSLENNEGV---PSPMLSISNLTQEQ----VQ 350
Query: 153 RCIRKMDHHCPWVNNCVGENNQKYFVLFTFYIATISIHSLFLAVNQFLMCVRNEWRECSS 212
+ K + H P Q + I SL ++
Sbjct: 351 DYVNKTNSHLP-------AGKQ------------VEI-SLVNGAKNLVVS---------- 380
Query: 213 YSPPATVVFLVFLVFEALLFAIFTTVMLLSQLQAIWNDETGIEQLKKEEAKWARKSRWKS 272
PP + L L L + +A +G++Q + ++ RK +
Sbjct: 381 -GPPQS---LYGLNLT------------LRKAKA----PSGLDQSRIPFSE--RKLK--- 415
Query: 273 IQAVFGRFSLAWFSPFTQPPSRSKFESYLYPGAVPKGNATTEIIQQMGFREGQVIFKCPK 332
RF L SPF L P A+ I + +
Sbjct: 416 ---FSNRF-LPVASPF--------HSHLLVP-------ASDLINKDLVKNN--------- 447
Query: 333 CCCIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQKYFVLFTILLMLLLGPALCDQA 392
+ D P + G + + L + + D
Sbjct: 448 -VSFNAK---------------DIQIPVYDTFDGSDLRV--------LSGSISERIVDCI 483
Query: 393 PDKDDTEDDV-----TTTPASEFEAFYPREAYGIPNSVVRAPHGHGSFYKYR--NPALVD 445
V T A+ F P A G+ R G G R +D
Sbjct: 484 -----IRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGV----RVIVAGTLD 534
Query: 446 TKNAAAYGFR 455
YGF+
Sbjct: 535 INPDDDYGFK 544
Score = 42.3 bits (99), Expect = 3e-04
Identities = 38/210 (18%), Positives = 63/210 (30%), Gaps = 62/210 (29%)
Query: 165 VNNCVGENNQKYF------VLFTF---YIATISIHSL---FLAVNQFLMCVRNEW----- 207
V++ V + F L F Y+ IH+L L N + E
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI 127
Query: 208 -------RECSSYSPPATVVFLVFLVFEAL------LFAIF----TTVMLLSQLQAIWND 250
R S A +F A+ L AIF T +L+ ++
Sbjct: 128 TARIMAKRPFDKKSNSA--------LFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT 179
Query: 251 -ETGIEQLKKEEAK--WARKSRWKSIQAVFGR-FSL-AWFS-PFTQPPSRSKFESYL--Y 302
+ L K A+ + VF + ++ W P P + YL
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD-----KDYLLSI 234
Query: 303 PGAVPKGNATTEIIQ------QMGFREGQV 326
P + P ++ +GF G++
Sbjct: 235 PISCP-LIGVIQLAHYVVTAKLLGFTPGEL 263
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.11
Identities = 12/60 (20%), Positives = 18/60 (30%), Gaps = 32/60 (53%)
Query: 255 EQLKKEEAKWARKSRWKSIQAVFGRFSLAWFSPFTQPPSRSKFESYLYPGAVPKGNATTE 314
+ LKK +A SL ++ + P L A+ AT E
Sbjct: 20 QALKKLQA------------------SLKLYADDSAPA--------L---AI---KATME 47
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine
methyltransferase, transferase, network VIA methyllysine
signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A*
Length = 449
Score = 31.0 bits (69), Expect = 0.98
Identities = 6/41 (14%), Positives = 15/41 (36%)
Query: 125 FREGQVIFKCPKCCCIKPERAHHCSVCQRCIRKMDHHCPWV 165
+ G+++F P+ + + +R + WV
Sbjct: 59 VQAGELLFVVPRAALLSQHTCSIGGLLERERVALQSQSGWV 99
Score = 31.0 bits (69), Expect = 0.98
Identities = 6/41 (14%), Positives = 15/41 (36%)
Query: 321 FREGQVIFKCPKCCCIKPERAHHCSVCQRCIRKMDHHCPWV 361
+ G+++F P+ + + +R + WV
Sbjct: 59 VQAGELLFVVPRAALLSQHTCSIGGLLERERVALQSQSGWV 99
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA-
binding, transport, tRNA processing, tRNA-binding, RNA
binding protein; 3.10A {Schizosaccharomyces pombe} PDB:
3icq_T*
Length = 980
Score = 31.0 bits (69), Expect = 1.0
Identities = 11/78 (14%), Positives = 25/78 (32%)
Query: 313 TEIIQQMGFREGQVIFKCPKCCCIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQKY 372
+ + + I + A + C++ W+N + N
Sbjct: 176 NLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCM 235
Query: 373 FVLFTILLMLLLGPALCD 390
+L++ L + L A C+
Sbjct: 236 NLLYSFLQIEELRCAACE 253
Score = 30.2 bits (67), Expect = 1.9
Identities = 8/66 (12%), Positives = 20/66 (30%)
Query: 117 TEIIQQMGFREGQVIFKCPKCCCIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQKY 176
+ + + I + A + C++ W+N + N
Sbjct: 176 NLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCM 235
Query: 177 FVLFTF 182
+L++F
Sbjct: 236 NLLYSF 241
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 1.1
Identities = 19/113 (16%), Positives = 34/113 (30%), Gaps = 28/113 (24%)
Query: 55 LTWLLILYAEFVVMAVMLIPNPHPMYRFFNMALFQTFAFLAFASHLRAMLTDPGAVPKGN 114
L W L+ E +V +F L + FL S ++ P +
Sbjct: 67 LFWTLLSKQEEMV------------QKFVEEVLRINYKFL--MSPIKTEQRQPSMM---- 108
Query: 115 ATTEIIQQMG--FREGQVIFKCPKCCCIKPERAHHCSVCQRCIRKMDHHCPWV 165
T I+Q + + QV K R ++ + ++ V
Sbjct: 109 -TRMYIEQRDRLYNDNQVFAKYNVS------RLQPYLKLRQALLELRPA-KNV 153
>2jkb_A Sialidase B; intramolecular trans-sialidase, lyase, glycosidase,
neuraminidase; HET: SKD; 1.54A {Streptococcus
pneumoniae} PDB: 2vw2_A* 2vw1_A* 2vw0_A*
Length = 686
Score = 30.7 bits (68), Expect = 1.3
Identities = 6/47 (12%), Positives = 13/47 (27%), Gaps = 3/47 (6%)
Query: 422 PNSVVRAPHGHGSFYKYRNPALVDTKNA---AAYGFRFDGKRRFNFD 465
P ++ +R P L + ++ R+ G
Sbjct: 217 PFQLIFQSGDSTQANYFRIPTLYTLSSGRVLSSIDARYGGTHDSKSK 263
>3n71_A Histone lysine methyltransferase SMYD1; heart development,
transcription; HET: SFG MES; 2.30A {Mus musculus}
Length = 490
Score = 29.5 bits (65), Expect = 2.7
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 6/49 (12%)
Query: 125 FREGQVIFKCPKCCCIKPERAHHCSVCQRCIRKMDH-----HCPWVNNC 168
F VIF + + VC C ++ + C + + C
Sbjct: 27 FWAADVIFAERAYSAV-VFDSLINFVCHTCFKRQEKLHRCGQCKFAHYC 74
Score = 29.5 bits (65), Expect = 2.7
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 6/49 (12%)
Query: 321 FREGQVIFKCPKCCCIKPERAHHCSVCQRCIRKMDH-----HCPWVNNC 364
F VIF + + VC C ++ + C + + C
Sbjct: 27 FWAADVIFAERAYSAV-VFDSLINFVCHTCFKRQEKLHRCGQCKFAHYC 74
>3smt_A Histone-lysine N-methyltransferase SETD3; histone
methyltransferase, histone modification, LYSI
translational modification, structural genomics; HET:
SAM; 2.04A {Homo sapiens}
Length = 497
Score = 29.0 bits (64), Expect = 3.5
Identities = 3/40 (7%), Positives = 11/40 (27%)
Query: 125 FREGQVIFKCPKCCCIKPERAHHCSVCQRCIRKMDHHCPW 164
+ ++ P+ + E A + + +
Sbjct: 113 IKAEELFLWVPRKLLMTVESAKNSVLGPLYSQDRILQAMG 152
Score = 29.0 bits (64), Expect = 3.5
Identities = 3/40 (7%), Positives = 11/40 (27%)
Query: 321 FREGQVIFKCPKCCCIKPERAHHCSVCQRCIRKMDHHCPW 360
+ ++ P+ + E A + + +
Sbjct: 113 IKAEELFLWVPRKLLMTVESAKNSVLGPLYSQDRILQAMG 152
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.2 bits (62), Expect = 5.0
Identities = 5/28 (17%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 248 WNDETGIEQLKKEEAKWARKSRWKSIQA 275
W +E + + A + W+ +A
Sbjct: 90 WREEQRKRLQELDAASKVMEQEWRE-KA 116
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain,
protein lysine methyltransferase, transferase; HET: SAM;
2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB:
2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*
Length = 440
Score = 27.9 bits (61), Expect = 8.7
Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
Query: 125 FREGQVIFKCPKCCCIKPERAHHCSVCQRCIRKMDHH 161
VI + PK I P+ S R ++
Sbjct: 42 ISRNDVILQVPKRLWINPDAVAA-SEIGRVCSELKPW 77
Score = 27.9 bits (61), Expect = 8.7
Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
Query: 321 FREGQVIFKCPKCCCIKPERAHHCSVCQRCIRKMDHH 357
VI + PK I P+ S R ++
Sbjct: 42 ISRNDVILQVPKRLWINPDAVAA-SEIGRVCSELKPW 77
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation,
alternative splicing, HOST-virus interaction, UBL
conjugation pathway, zinc-finger, polymorphism; HET:
FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Length = 64
Score = 25.5 bits (56), Expect = 8.8
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 135 PKCCCIKPERAHHCSVCQRC---IRKMDHHCP 163
PK CI + H C C ++K + CP
Sbjct: 18 PKNGCIVHGKTGHLMACFTCAKKLKKRNKPCP 49
Score = 25.5 bits (56), Expect = 8.8
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 331 PKCCCIKPERAHHCSVCQRC---IRKMDHHCP 359
PK CI + H C C ++K + CP
Sbjct: 18 PKNGCIVHGKTGHLMACFTCAKKLKKRNKPCP 49
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.140 0.468
Gapped
Lambda K H
0.267 0.0512 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,419,023
Number of extensions: 440048
Number of successful extensions: 1621
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1613
Number of HSP's successfully gapped: 69
Length of query: 465
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 368
Effective length of database: 3,993,456
Effective search space: 1469591808
Effective search space used: 1469591808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 59 (27.0 bits)