RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9305
         (465 letters)



>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden
           pea (Pisum sativum) [TaxId: 3888]}
          Length = 261

 Score = 29.9 bits (66), Expect = 0.61
 Identities = 7/36 (19%), Positives = 11/36 (30%)

Query: 125 FREGQVIFKCPKCCCIKPERAHHCSVCQRCIRKMDH 160
                VI + PK   I P+      + + C      
Sbjct: 41  ISRNDVILQVPKRLWINPDAVAASEIGRVCSELKPW 76



 Score = 29.9 bits (66), Expect = 0.61
 Identities = 7/36 (19%), Positives = 11/36 (30%)

Query: 321 FREGQVIFKCPKCCCIKPERAHHCSVCQRCIRKMDH 356
                VI + PK   I P+      + + C      
Sbjct: 41  ISRNDVILQVPKRLWINPDAVAASEIGRVCSELKPW 76


>d2gl5a1 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273
           {Salmonella typhimurium [TaxId: 90371]}
          Length = 278

 Score = 26.6 bits (57), Expect = 6.2
 Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 2/125 (1%)

Query: 242 SQLQAIWNDETGIEQLKKEEAKWARKSRWKSIQAV-FGRFSLAWFSPFTQPPSRSKFESY 300
           SQLQ  W D+  I    +E A+ AR +      A+      +          +R++  S 
Sbjct: 11  SQLQFGWGDKNHILVTPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSG 70

Query: 301 LYPGAVPK-GNATTEIIQQMGFREGQVIFKCPKCCCIKPERAHHCSVCQRCIRKMDHHCP 359
           L      K G A    +++    +  +I +               ++ +  I   +    
Sbjct: 71  LLLADQLKMGEARIAAMREAMGDDADIIVEIHSLLGTNSAIQFAKAIEKYRIFLYEEPIH 130

Query: 360 WVNNC 364
            +N+ 
Sbjct: 131 PLNSD 135


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.140    0.468 

Gapped
Lambda     K      H
   0.267   0.0393    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,873,174
Number of extensions: 90609
Number of successful extensions: 511
Number of sequences better than 10.0: 1
Number of HSP's gapped: 505
Number of HSP's successfully gapped: 40
Length of query: 465
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 377
Effective length of database: 1,199,356
Effective search space: 452157212
Effective search space used: 452157212
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.9 bits)