Query psy9306
Match_columns 98
No_of_seqs 47 out of 49
Neff 3.6
Searched_HMMs 46136
Date Sat Aug 17 00:02:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9306.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9306hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1031|consensus 100.0 2.6E-41 5.6E-46 294.3 3.7 94 5-98 1060-1154(1169)
2 PRK00967 hypothetical protein; 98.1 2.8E-05 6.2E-10 54.2 8.6 75 12-86 2-88 (105)
3 PF01906 YbjQ_1: Putative heav 98.1 1.9E-05 4.2E-10 54.0 7.5 75 11-85 1-87 (105)
4 PRK12855 hypothetical protein; 97.7 0.00024 5.3E-09 49.8 7.9 75 12-86 2-88 (103)
5 PRK02877 hypothetical protein; 97.7 0.0002 4.3E-09 50.3 7.3 75 12-86 2-88 (106)
6 PRK12856 hypothetical protein; 97.7 0.00026 5.6E-09 49.7 7.8 75 12-86 2-88 (103)
7 PRK01119 hypothetical protein; 97.7 0.00031 6.7E-09 49.4 8.0 75 12-86 2-88 (106)
8 PRK01217 hypothetical protein; 97.7 0.00029 6.3E-09 50.1 7.7 81 6-86 3-95 (114)
9 PRK03732 hypothetical protein; 97.5 0.0006 1.3E-08 48.7 7.3 77 9-85 6-94 (114)
10 TIGR03884 sel_bind_Methan sele 97.4 0.00038 8.2E-09 47.0 5.4 53 12-83 2-54 (74)
11 COG0393 Uncharacterized conser 97.4 0.0007 1.5E-08 48.4 6.6 76 12-87 2-89 (108)
12 PF11524 SeleniumBinding: Sele 90.0 0.8 1.7E-05 31.5 4.6 55 9-82 5-59 (81)
13 COG0549 ArcC Carbamate kinase 59.5 1.8 3.9E-05 36.0 -1.3 11 67-77 4-14 (312)
14 PRK09411 carbamate kinase; Rev 53.9 2.7 5.9E-05 34.3 -1.1 11 67-77 5-15 (297)
15 PF13698 DUF4156: Domain of un 51.8 22 0.00048 24.0 3.2 60 7-78 7-69 (93)
16 KOG3306|consensus 45.8 17 0.00036 28.4 2.1 32 28-63 91-122 (185)
17 PRK12686 carbamate kinase; Rev 42.7 4.8 0.0001 32.9 -1.3 11 67-77 6-16 (312)
18 PRK12454 carbamate kinase-like 42.6 4.2 9E-05 33.4 -1.7 11 67-77 6-16 (313)
19 KOG1031|consensus 41.0 32 0.0007 32.2 3.4 28 53-80 476-503 (1169)
20 PF09967 DUF2201: VWA-like dom 37.6 55 0.0012 22.7 3.5 26 41-66 4-30 (126)
21 PRK10781 rcsF outer membrane l 34.9 78 0.0017 23.3 4.1 30 56-88 85-114 (133)
22 PRK12354 carbamate kinase; Rev 32.5 8.6 0.00019 31.5 -1.4 11 67-77 4-14 (307)
23 PF07536 HWE_HK: HWE histidine 25.2 78 0.0017 20.7 2.5 31 41-71 20-50 (83)
24 PRK14025 multifunctional 3-iso 24.7 63 0.0014 26.7 2.4 30 10-41 87-116 (330)
25 PF13642 DUF4144: protein stru 24.3 73 0.0016 22.2 2.3 23 53-75 63-85 (101)
26 PRK08997 isocitrate dehydrogen 23.7 69 0.0015 26.5 2.4 30 10-41 92-121 (334)
27 cd04235 AAK_CK AAK_CK: Carbama 23.5 13 0.00028 30.4 -1.8 11 67-77 3-13 (308)
28 PF13254 DUF4045: Domain of un 22.9 41 0.00089 29.1 1.0 12 46-57 7-18 (418)
29 KOG0777|consensus 22.8 92 0.002 26.0 3.0 30 45-74 264-293 (322)
30 PF07448 Spp-24: Secreted phos 21.2 61 0.0013 24.3 1.5 14 34-47 13-26 (139)
No 1
>KOG1031|consensus
Probab=100.00 E-value=2.6e-41 Score=294.31 Aligned_cols=94 Identities=55% Similarity=1.055 Sum_probs=91.9
Q ss_pred CCCcce-EEEeeccccCCceeeEEeeeeeEEEEeeeeeeeecCCcchhHHHHHHHHHHHHHHHHHhhcccEEeEEEeeeE
Q psy9306 5 PKEHYG-VDITPLSYIAGGKIERYLGNLNFFFIRESNCIRESGGLSGFVHSFVTEVLAILRAHVTALGGNAMVSYTMTHC 83 (98)
Q Consensus 5 ~~~~~~-V~iTPls~iPg~~i~kYLG~l~~hfIREst~vre~ggl~~F~~~fi~Ev~aivrAhV~alGGNAllsy~i~~~ 83 (98)
.+++.+ |++||||+|||++|+||||+||||||||||++||.||+++|+|-||+|++|||||||+|||||||+||.|++|
T Consensus 1060 ~~d~~gvv~mtplsfipg~ki~kylg~in~ffirestsire~ggisgflh~fiael~amvrahiaalggnamvsf~i~e~ 1139 (1169)
T KOG1031|consen 1060 ANDRVGVVDMTPLSFIPGAKIDKYLGIINFFFIRESTSIREEGGISGFLHAFIAELFAMVRAHIAALGGNAMVSFIIKEC 1139 (1169)
T ss_pred cccccceEecceecccccchhhhhhceeeEEEEecccchhhcCCchHHHHHHHHHHHHHHHHHHHhhcCceehHHHHhHH
Confidence 577888 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCceeecC
Q psy9306 84 ILLNNQGKNQVKELF 98 (98)
Q Consensus 84 ~l~dn~~KNQ~qcl~ 98 (98)
+++||+||||+||||
T Consensus 1140 m~~dn~~knq~qcli 1154 (1169)
T KOG1031|consen 1140 MFFDNPHKNQAQCLI 1154 (1169)
T ss_pred hhccCCCcccceEEE
Confidence 999999999999996
No 2
>PRK00967 hypothetical protein; Provisional
Probab=98.11 E-value=2.8e-05 Score=54.19 Aligned_cols=75 Identities=19% Similarity=0.318 Sum_probs=58.4
Q ss_pred EEeeccccCCceeeEEeeeeeEEEEeeeeeeeec--------CC-cchhH---HHHHHHHHHHHHHHHHhhcccEEeEEE
Q psy9306 12 DITPLSYIAGGKIERYLGNLNFFFIRESNCIRES--------GG-LSGFV---HSFVTEVLAILRAHVTALGGNAMVSYT 79 (98)
Q Consensus 12 ~iTPls~iPg~~i~kYLG~l~~hfIREst~vre~--------gg-l~~F~---~~fi~Ev~aivrAhV~alGGNAllsy~ 79 (98)
++|..+.+||.+|++|||.+.=--|+=..-.|+. || +..+- .+.-.|++.-..++...+|+||+++.+
T Consensus 2 iitTt~~i~G~~I~~~lG~V~G~~v~s~~~~~d~~a~~r~~~GGe~~~y~~~l~~aR~eA~~rm~~~A~~~GAnAIIgvr 81 (105)
T PRK00967 2 LVTTTENIPGKEIIEVIGEVFGLTTQSKNIVRDIGAGLKNVVGGEIKGYTEMLTEARDIAIDRMKEEAKQKGANAIVGMR 81 (105)
T ss_pred EEEcCCCcCCeEEEEEeeEEEEEEEEccchHhHHHHHHhHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 6899999999999999999987777665555542 22 33333 333478888889999999999999999
Q ss_pred eeeEEEe
Q psy9306 80 MTHCILL 86 (98)
Q Consensus 80 i~~~~l~ 86 (98)
++.-++.
T Consensus 82 ~d~~~~~ 88 (105)
T PRK00967 82 FDSSSIR 88 (105)
T ss_pred EEeeeec
Confidence 9998774
No 3
>PF01906 YbjQ_1: Putative heavy-metal-binding; InterPro: IPR002765 This family of bacterial proteins have not been characterised.; PDB: 3QKB_A 1VR4_D 1Y2I_D 2GTC_C.
Probab=98.10 E-value=1.9e-05 Score=54.03 Aligned_cols=75 Identities=23% Similarity=0.372 Sum_probs=60.0
Q ss_pred EEEeeccccCCceeeEEeeeeeEEEEeeeeeeee---------cCCcchh---HHHHHHHHHHHHHHHHHhhcccEEeEE
Q psy9306 11 VDITPLSYIAGGKIERYLGNLNFFFIRESNCIRE---------SGGLSGF---VHSFVTEVLAILRAHVTALGGNAMVSY 78 (98)
Q Consensus 11 V~iTPls~iPg~~i~kYLG~l~~hfIREst~vre---------~ggl~~F---~~~fi~Ev~aivrAhV~alGGNAllsy 78 (98)
+.+|..+.+||.+|++|+|.+.=--++.....++ .|....+ ++..-.|++.-.+.+...+|+||+++.
T Consensus 1 mivtTt~~~~g~~I~~~~G~V~g~~v~~~~~~~~~~~~~~~~~gg~~~~~~~~l~~~r~~A~~~L~~~A~~~GAnAVIgv 80 (105)
T PF01906_consen 1 MIVTTTNTIPGYEITEYLGIVSGEVVRSRNILKDFFASLKDIVGGESKSYTEMLDEAREEALERLKEEAKELGANAVIGV 80 (105)
T ss_dssp -EE-SSSSCTTEEECEEEEEEEEEEEEGHHHHHHHCTTCSSEEETTTCSCHHHHHHHHHHHHHHHHHHHHHTT-SEEEEE
T ss_pred CEEEcCCCcCCEEEEEEeeEEEEEEEEeechhhhhhhhHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 4688899999999999999999888877644444 2234444 677788999999999999999999999
Q ss_pred EeeeEEE
Q psy9306 79 TMTHCIL 85 (98)
Q Consensus 79 ~i~~~~l 85 (98)
+++...+
T Consensus 81 ~~~~~~~ 87 (105)
T PF01906_consen 81 RFDYSSI 87 (105)
T ss_dssp EEEEEEE
T ss_pred EEEeeee
Confidence 9999988
No 4
>PRK12855 hypothetical protein; Provisional
Probab=97.74 E-value=0.00024 Score=49.84 Aligned_cols=75 Identities=24% Similarity=0.258 Sum_probs=58.2
Q ss_pred EEeeccccCCceeeEEeeeeeEEEEeeeeeeee--------cCCcchhHHHHH----HHHHHHHHHHHHhhcccEEeEEE
Q psy9306 12 DITPLSYIAGGKIERYLGNLNFFFIRESNCIRE--------SGGLSGFVHSFV----TEVLAILRAHVTALGGNAMVSYT 79 (98)
Q Consensus 12 ~iTPls~iPg~~i~kYLG~l~~hfIREst~vre--------~ggl~~F~~~fi----~Ev~aivrAhV~alGGNAllsy~ 79 (98)
++|..+.+||.+|.+|+|.+.=--+|=..-.|+ .||-..=+++-+ .|++.=.++|.+.+|+||+++.+
T Consensus 2 iitTt~~i~g~~I~e~lGiV~G~~V~~~n~~kd~~a~lr~ivGG~~~~Y~~~l~~aR~~A~~rm~~~A~~lGAnAVVgvr 81 (103)
T PRK12855 2 IVTTTSTIQGKEIIEYVDIVNGEAIMGANIVRDLFASVRDVVGGRSGAYESKLKEARDIAMEEMKTLARQKNANAIVGID 81 (103)
T ss_pred EEecCCCcCCeEEEEEeeEEEEEEEEeeeeHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 689999999999999999998887877777766 333333334444 45556668999999999999999
Q ss_pred eeeEEEe
Q psy9306 80 MTHCILL 86 (98)
Q Consensus 80 i~~~~l~ 86 (98)
++.-.+.
T Consensus 82 ~d~~~i~ 88 (103)
T PRK12855 82 VDYEVVR 88 (103)
T ss_pred EEhhHhc
Confidence 9887664
No 5
>PRK02877 hypothetical protein; Provisional
Probab=97.73 E-value=0.0002 Score=50.32 Aligned_cols=75 Identities=23% Similarity=0.249 Sum_probs=57.1
Q ss_pred EEeeccccCCceeeEEeeeeeEEEEeeeeeeee--------cCCcchhHH----HHHHHHHHHHHHHHHhhcccEEeEEE
Q psy9306 12 DITPLSYIAGGKIERYLGNLNFFFIRESNCIRE--------SGGLSGFVH----SFVTEVLAILRAHVTALGGNAMVSYT 79 (98)
Q Consensus 12 ~iTPls~iPg~~i~kYLG~l~~hfIREst~vre--------~ggl~~F~~----~fi~Ev~aivrAhV~alGGNAllsy~ 79 (98)
++|.-+.+||.+|++|+|.+.=--|+-..-.|+ .||-..=++ ..=.|++.=.++|...+|.||+++.+
T Consensus 2 ivtTt~~i~G~~I~e~lG~V~G~~V~~~n~~kd~~a~l~~i~GG~~~~Y~~~l~~aR~~A~~rm~~~A~~lGAnAVIgvr 81 (106)
T PRK02877 2 QFSTTPTLEGQTIVEYCGVVTGEAILGANIFRDFFAGIRDIVGGRSGAYEKELRKAREIAFEELGEQARALGADAVVGID 81 (106)
T ss_pred EEecCCCcCCeEEEEEeeEEEEEEEEeechHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 678899999999999999998888876666665 222222233 34445566668999999999999999
Q ss_pred eeeEEEe
Q psy9306 80 MTHCILL 86 (98)
Q Consensus 80 i~~~~l~ 86 (98)
++.-.+.
T Consensus 82 ~d~~~i~ 88 (106)
T PRK02877 82 IDYETVG 88 (106)
T ss_pred EEehhcc
Confidence 9987664
No 6
>PRK12856 hypothetical protein; Provisional
Probab=97.72 E-value=0.00026 Score=49.69 Aligned_cols=75 Identities=24% Similarity=0.264 Sum_probs=57.8
Q ss_pred EEeeccccCCceeeEEeeeeeEEEEeeeeeeeec--------CCcchhHHHHH----HHHHHHHHHHHHhhcccEEeEEE
Q psy9306 12 DITPLSYIAGGKIERYLGNLNFFFIRESNCIRES--------GGLSGFVHSFV----TEVLAILRAHVTALGGNAMVSYT 79 (98)
Q Consensus 12 ~iTPls~iPg~~i~kYLG~l~~hfIREst~vre~--------ggl~~F~~~fi----~Ev~aivrAhV~alGGNAllsy~ 79 (98)
++|..+.+||.+|.+|+|.+.=--||=..-.|+. ||-..=+++-+ .|++.=.++|.+.+|+||+++.+
T Consensus 2 iitTt~~i~G~~I~e~lGiV~G~~V~~~n~~kd~~a~lr~ivGG~~~~Y~~~l~~aR~~A~~rm~~~A~~lGAnAVvgvr 81 (103)
T PRK12856 2 IVTTTSGIQGKEIIEYIDIVNGEAIMGANIVRDLFASVRDVVGGRAGSYESKLKEARDIAMDEMKELAKQKGANAIVGVD 81 (103)
T ss_pred EEecCCCcCCeEEEEEeeEEEEEEEEeeeeHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 6889999999999999999988888877777762 33333333334 45555668999999999999999
Q ss_pred eeeEEEe
Q psy9306 80 MTHCILL 86 (98)
Q Consensus 80 i~~~~l~ 86 (98)
++.-.+.
T Consensus 82 ~d~~~~~ 88 (103)
T PRK12856 82 VDYEVVR 88 (103)
T ss_pred EEhhHhc
Confidence 9887664
No 7
>PRK01119 hypothetical protein; Provisional
Probab=97.70 E-value=0.00031 Score=49.35 Aligned_cols=75 Identities=20% Similarity=0.268 Sum_probs=57.5
Q ss_pred EEeeccccCCceeeEEeeeeeEEEEeeeeeeeec--------CC-cchh---HHHHHHHHHHHHHHHHHhhcccEEeEEE
Q psy9306 12 DITPLSYIAGGKIERYLGNLNFFFIRESNCIRES--------GG-LSGF---VHSFVTEVLAILRAHVTALGGNAMVSYT 79 (98)
Q Consensus 12 ~iTPls~iPg~~i~kYLG~l~~hfIREst~vre~--------gg-l~~F---~~~fi~Ev~aivrAhV~alGGNAllsy~ 79 (98)
++|..+.+||.+|++|+|.+.=--+|=..-.|+. || ++++ +.+.=.|++.=..++...+|+||+++.+
T Consensus 2 iitTt~~i~G~~I~~~lG~V~G~~V~s~n~~kd~~a~lr~i~GG~~~~Y~~~l~~aR~~A~~rm~~~A~~lGAnAVIgvr 81 (106)
T PRK01119 2 IVTTSPNIEGKQIIEYKKIVFGEVITGVNFMKDIGAGLRNFFGGRSQGYEDELINAREEAIREMEQRAKDIGANAVIGVD 81 (106)
T ss_pred EEecCCCcCCeEEEEEeeEEEEEEEEEechhhhHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 6889999999999999999988777766666552 33 2222 3333456667778999999999999999
Q ss_pred eeeEEEe
Q psy9306 80 MTHCILL 86 (98)
Q Consensus 80 i~~~~l~ 86 (98)
++.-.+.
T Consensus 82 ~d~~~ig 88 (106)
T PRK01119 82 IDYEVLG 88 (106)
T ss_pred EEeeeec
Confidence 9987774
No 8
>PRK01217 hypothetical protein; Provisional
Probab=97.68 E-value=0.00029 Score=50.11 Aligned_cols=81 Identities=21% Similarity=0.280 Sum_probs=60.0
Q ss_pred CCcceEEEeeccccCCceeeEEeeeeeEEEEeeeeeeeec--------CC-cchh---HHHHHHHHHHHHHHHHHhhccc
Q psy9306 6 KEHYGVDITPLSYIAGGKIERYLGNLNFFFIRESNCIRES--------GG-LSGF---VHSFVTEVLAILRAHVTALGGN 73 (98)
Q Consensus 6 ~~~~~V~iTPls~iPg~~i~kYLG~l~~hfIREst~vre~--------gg-l~~F---~~~fi~Ev~aivrAhV~alGGN 73 (98)
.+...+++|..+.|||.+|.+|||.+.=--+|-..-.++. || +..+ +...=.|++.=.+.+-..+|+|
T Consensus 3 ~~~~~mivtTt~~i~g~~I~e~lG~V~G~~V~s~~~~~d~~a~lr~~~GGe~~~Y~~~l~~aR~eA~~rm~~~A~~lGAn 82 (114)
T PRK01217 3 EEEGDVIVVTSEYIPGYRIVEVLGVVWGITVRSRGLGGNIVAGLRSLAGGEIKEYVEMAEQARNQALERMIDHAKELGAN 82 (114)
T ss_pred cccCCEEEEcCCCcCCeEEEEEEEEEEEEEEEecchhhHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4567789999999999999999999987666654444442 22 2222 2334446777778999999999
Q ss_pred EEeEEEeeeEEEe
Q psy9306 74 AMVSYTMTHCILL 86 (98)
Q Consensus 74 Allsy~i~~~~l~ 86 (98)
|+++-|++.-.+.
T Consensus 83 AVVgvrfd~s~i~ 95 (114)
T PRK01217 83 AVINVRFDSNEIS 95 (114)
T ss_pred EEEEEEEEHHHhc
Confidence 9999999887664
No 9
>PRK03732 hypothetical protein; Provisional
Probab=97.50 E-value=0.0006 Score=48.68 Aligned_cols=77 Identities=21% Similarity=0.308 Sum_probs=57.6
Q ss_pred ceEEEeeccccCCceeeEEeeeeeEEEEeeeeeeeec--------CC-cchh---HHHHHHHHHHHHHHHHHhhcccEEe
Q psy9306 9 YGVDITPLSYIAGGKIERYLGNLNFFFIRESNCIRES--------GG-LSGF---VHSFVTEVLAILRAHVTALGGNAMV 76 (98)
Q Consensus 9 ~~V~iTPls~iPg~~i~kYLG~l~~hfIREst~vre~--------gg-l~~F---~~~fi~Ev~aivrAhV~alGGNAll 76 (98)
.++++|..+.+||.+|.+|+|.+.=--+|=..-.|+. || ++.| +.+.=.|++.=.+.+-+.+|+||++
T Consensus 6 ~~miitTT~~i~g~~I~~~lG~V~G~~V~s~n~~kd~~a~lr~i~GGe~~~Yt~~l~~aR~~A~~rm~~~A~~lGAnAVV 85 (114)
T PRK03732 6 EGIIVVTTETIPGYRIVEVKGIARGGIVKATHLGRDIMALLRNIKGGEVKEYTQMMAEAREEALRRMALHAKELGANAVV 85 (114)
T ss_pred CCEEEEcCCCcCCeEEEEEEEEEEEEEEEEechHhHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 3588999999999999999999887777666555552 22 2222 2333356667778999999999999
Q ss_pred EEEeeeEEE
Q psy9306 77 SYTMTHCIL 85 (98)
Q Consensus 77 sy~i~~~~l 85 (98)
+-+++.-.+
T Consensus 86 gvr~d~s~~ 94 (114)
T PRK03732 86 NFRFATSNV 94 (114)
T ss_pred EEEEEehhh
Confidence 999987655
No 10
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=97.45 E-value=0.00038 Score=47.00 Aligned_cols=53 Identities=34% Similarity=0.520 Sum_probs=41.6
Q ss_pred EEeeccccCCceeeEEeeeeeEEEEeeeeeeeecCCcchhHHHHHHHHHHHHHHHHHhhcccEEeEEEeeeE
Q psy9306 12 DITPLSYIAGGKIERYLGNLNFFFIRESNCIRESGGLSGFVHSFVTEVLAILRAHVTALGGNAMVSYTMTHC 83 (98)
Q Consensus 12 ~iTPls~iPg~~i~kYLG~l~~hfIREst~vre~ggl~~F~~~fi~Ev~aivrAhV~alGGNAllsy~i~~~ 83 (98)
++|.-+-|||..+ +|||.++ -|+-+ ..|++.-...+.+.+|+||+++.|++.-
T Consensus 2 iitT~~~i~G~ei-~yl~iv~----~~~~d--------------~d~Al~eM~e~A~~lGAnAVVGvr~d~s 54 (74)
T TIGR03884 2 IITTADEIPGLQL-YYLGIVS----TESDN--------------VDEIVENLREKVKAKGGMGLIAFRITCA 54 (74)
T ss_pred EEEecccCCCeEE-EEEEEEE----EecCC--------------HHHHHHHHHHHHHHcCCCEEEEEEEEcC
Confidence 6899999999999 9999997 22221 2345555667889999999999999864
No 11
>COG0393 Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.0007 Score=48.36 Aligned_cols=76 Identities=28% Similarity=0.283 Sum_probs=57.8
Q ss_pred EEeeccccCCceeeEEeeeeeEEEEeeeeeeee--------cCCcchhHH----HHHHHHHHHHHHHHHhhcccEEeEEE
Q psy9306 12 DITPLSYIAGGKIERYLGNLNFFFIRESNCIRE--------SGGLSGFVH----SFVTEVLAILRAHVTALGGNAMVSYT 79 (98)
Q Consensus 12 ~iTPls~iPg~~i~kYLG~l~~hfIREst~vre--------~ggl~~F~~----~fi~Ev~aivrAhV~alGGNAllsy~ 79 (98)
++|.-.+|||.+|.+|+|.+.--.|+=..-.|+ .||=.+=+. +.=.|++.=.+.+.++||.||+++.+
T Consensus 2 i~tTT~~I~G~~I~~~~G~v~G~~V~g~n~~~d~~agir~i~GGe~~~Y~~~l~~aR~~Al~rm~~~A~~lGAnAVVgvr 81 (108)
T COG0393 2 IITTTPTIEGKRIVEYLGVVTGETVRGANVGRDIFAGIRDIVGGEIKAYEKMLAEAREEALERMVDEAEALGANAVVGVR 81 (108)
T ss_pred EEecCCCcCCEEEEEEeeEEEEEEEEEeeehhhHHHhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 578889999999999999999888887777665 222222222 33345666677899999999999999
Q ss_pred eeeEEEee
Q psy9306 80 MTHCILLN 87 (98)
Q Consensus 80 i~~~~l~d 87 (98)
++.-.+.+
T Consensus 82 ~d~~~ig~ 89 (108)
T COG0393 82 FDYSTIGE 89 (108)
T ss_pred echhHhCC
Confidence 98877653
No 12
>PF11524 SeleniumBinding: Selenium binding protein; InterPro: IPR021603 Selenium is an important nutrient which needs to be regulated since lack of the nutrient leads to cell abnormalities and high concentrations are toxic.SeBP regulates the level of free selenium in the cell by sequestering the nutrient during transport. SeBP acts as a pentamer and delivers the selenium to the selenophosphate synthetase enzyme []. Each subunit is composed of an alpha helix on top of a four stranded twisted ss sheet, stabilised by hydrogen bonds []. members of this entry are restricted to the archaeal Methanococcales.; PDB: 2JZ7_D.
Probab=89.98 E-value=0.8 Score=31.53 Aligned_cols=55 Identities=29% Similarity=0.410 Sum_probs=33.3
Q ss_pred ceEEEeeccccCCceeeEEeeeeeEEEEeeeeeeeecCCcchhHHHHHHHHHHHHHHHHHhhcccEEeEEEeee
Q psy9306 9 YGVDITPLSYIAGGKIERYLGNLNFFFIRESNCIRESGGLSGFVHSFVTEVLAILRAHVTALGGNAMVSYTMTH 82 (98)
Q Consensus 9 ~~V~iTPls~iPg~~i~kYLG~l~~hfIREst~vre~ggl~~F~~~fi~Ev~aivrAhV~alGGNAllsy~i~~ 82 (98)
..++||.-+-|||-.+ -|+|.++ |+.. =..|+....+-.|++.+|+++++||++.
T Consensus 5 ~~~IITT~~eIPGiel-y~~gIvS-----~~~e-------------nvd~li~~lee~vk~k~~~giigFki~~ 59 (81)
T PF11524_consen 5 DEFIITTTNEIPGIEL-YYLGIVS-----EASE-------------NVDELIKKLEEKVKAKGGMGIIGFKITA 59 (81)
T ss_dssp SSSEEESSS--TTS---EEEEEEE-----EBSS-------------SHHHHHHHHHHHHHHTT--EEES----S
T ss_pred ceEEEEEcCcCCCeEE-EeehhHH-----HHHh-------------hHHHHHHHHHHHHHhCCCceEEEEEEEe
Confidence 3578999999999765 5677664 2221 1456777788899999999999999986
No 13
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=59.50 E-value=1.8 Score=35.98 Aligned_cols=11 Identities=64% Similarity=1.029 Sum_probs=9.5
Q ss_pred HHhhcccEEeE
Q psy9306 67 VTALGGNAMVS 77 (98)
Q Consensus 67 V~alGGNAlls 77 (98)
|.|||||||+.
T Consensus 4 VvALGGNAll~ 14 (312)
T COG0549 4 VVALGGNALLQ 14 (312)
T ss_pred EEEecchhhcC
Confidence 67999999985
No 14
>PRK09411 carbamate kinase; Reviewed
Probab=53.85 E-value=2.7 Score=34.34 Aligned_cols=11 Identities=64% Similarity=1.029 Sum_probs=9.5
Q ss_pred HHhhcccEEeE
Q psy9306 67 VTALGGNAMVS 77 (98)
Q Consensus 67 V~alGGNAlls 77 (98)
|.|||||||+.
T Consensus 5 VvAlGGNAl~~ 15 (297)
T PRK09411 5 VVALGGNALLQ 15 (297)
T ss_pred EEEcCchhhcC
Confidence 67999999975
No 15
>PF13698 DUF4156: Domain of unknown function (DUF4156)
Probab=51.76 E-value=22 Score=23.98 Aligned_cols=60 Identities=23% Similarity=0.284 Sum_probs=37.5
Q ss_pred CcceEEEeeccccCCceeeEEeeeeeEEEEeeeeeeeecCCcchh-H--HHHHHHHHHHHHHHHHhhcccEEeEE
Q psy9306 7 EHYGVDITPLSYIAGGKIERYLGNLNFFFIRESNCIRESGGLSGF-V--HSFVTEVLAILRAHVTALGGNAMVSY 78 (98)
Q Consensus 7 ~~~~V~iTPls~iPg~~i~kYLG~l~~hfIREst~vre~ggl~~F-~--~~fi~Ev~aivrAhV~alGGNAllsy 78 (98)
+...|.+.+-.-.-++ ++||.+.= .+.-.++.+ . ...+.|+...+|-+.++||||.++-.
T Consensus 7 ~~~~V~i~~~~~~~~C---~~LG~Vtg---------s~~~~~~~~~~~~~~l~~ga~NdlrNeAa~lGgntV~~~ 69 (93)
T PF13698_consen 7 EAKQVRIVDSQPVSNC---QFLGEVTG---------SQGNWYSGQFRSNEKLMRGARNDLRNEAAKLGGNTVVLV 69 (93)
T ss_pred CcCEEEEecCCCcccC---eEeeEEEE---------EecceeeeeccccHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3456666444443333 57887642 111112222 1 45788999999999999999999843
No 16
>KOG3306|consensus
Probab=45.83 E-value=17 Score=28.41 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=26.8
Q ss_pred eeeeeEEEEeeeeeeeecCCcchhHHHHHHHHHHHH
Q psy9306 28 LGNLNFFFIRESNCIRESGGLSGFVHSFVTEVLAIL 63 (98)
Q Consensus 28 LG~l~~hfIREst~vre~ggl~~F~~~fi~Ev~aiv 63 (98)
+|.-.-|+.||.|+.++. .|.+..++|+.-.+
T Consensus 91 ~~p~~YF~~Re~w~~td~----l~~pmvLm~v~plL 122 (185)
T KOG3306|consen 91 SGPPSYFIVREDWSATDR----LKVPMVLMEVRPLL 122 (185)
T ss_pred cCCccceEEEeEeeeeec----ccCcchHHHHHHHH
Confidence 577778899999999996 89999999986543
No 17
>PRK12686 carbamate kinase; Reviewed
Probab=42.71 E-value=4.8 Score=32.90 Aligned_cols=11 Identities=64% Similarity=1.002 Sum_probs=9.4
Q ss_pred HHhhcccEEeE
Q psy9306 67 VTALGGNAMVS 77 (98)
Q Consensus 67 V~alGGNAlls 77 (98)
|.|+|||||+.
T Consensus 6 VialGGnAl~~ 16 (312)
T PRK12686 6 VIALGGNAILQ 16 (312)
T ss_pred EEEcChHhhCC
Confidence 67899999975
No 18
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=42.59 E-value=4.2 Score=33.37 Aligned_cols=11 Identities=64% Similarity=1.011 Sum_probs=9.6
Q ss_pred HHhhcccEEeE
Q psy9306 67 VTALGGNAMVS 77 (98)
Q Consensus 67 V~alGGNAlls 77 (98)
|.|||||||+.
T Consensus 6 vvalgGnAl~~ 16 (313)
T PRK12454 6 VIALGGNALLQ 16 (313)
T ss_pred EEEeChHHhCC
Confidence 67999999986
No 19
>KOG1031|consensus
Probab=41.02 E-value=32 Score=32.19 Aligned_cols=28 Identities=25% Similarity=0.499 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHhhcccEEeEEEe
Q psy9306 53 HSFVTEVLAILRAHVTALGGNAMVSYTM 80 (98)
Q Consensus 53 ~~fi~Ev~aivrAhV~alGGNAllsy~i 80 (98)
...-+|+---+|+|.+|||.||.++|.=
T Consensus 476 dawwaeir~eikshakalgc~~vlgyae 503 (1169)
T KOG1031|consen 476 DAWWAEIRMEIKSHAKALGCHAVLGYAE 503 (1169)
T ss_pred hHHHHHHHHHHHHHHHhcCceEEEeecc
Confidence 4567888888999999999999999973
No 20
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=37.58 E-value=55 Score=22.73 Aligned_cols=26 Identities=38% Similarity=0.581 Sum_probs=21.7
Q ss_pred eeeecCCcch-hHHHHHHHHHHHHHHH
Q psy9306 41 CIRESGGLSG-FVHSFVTEVLAILRAH 66 (98)
Q Consensus 41 ~vre~ggl~~-F~~~fi~Ev~aivrAh 66 (98)
.++-||.++. -+.+|++|+.+|.|..
T Consensus 4 aiDtSGSis~~~l~~fl~ev~~i~~~~ 30 (126)
T PF09967_consen 4 AIDTSGSISDEELRRFLSEVAGILRRF 30 (126)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHhC
Confidence 4677888865 7899999999999975
No 21
>PRK10781 rcsF outer membrane lipoprotein; Reviewed
Probab=34.94 E-value=78 Score=23.31 Aligned_cols=30 Identities=10% Similarity=0.332 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhhcccEEeEEEeeeEEEeeC
Q psy9306 56 VTEVLAILRAHVTALGGNAMVSYTMTHCILLNN 88 (98)
Q Consensus 56 i~Ev~aivrAhV~alGGNAllsy~i~~~~l~dn 88 (98)
+.++.--.|--++.||||+++ +.+|.+.++
T Consensus 85 ~~~Ar~~~r~kAa~~gaN~Vv---l~~C~~~~~ 114 (133)
T PRK10781 85 IPTARKRMQINASKMKANAVL---LHSCEITSG 114 (133)
T ss_pred HHHHHHHHHHHHHHcCCCEEE---EEEeeccCC
Confidence 557777788889999999987 667877764
No 22
>PRK12354 carbamate kinase; Reviewed
Probab=32.50 E-value=8.6 Score=31.48 Aligned_cols=11 Identities=64% Similarity=1.017 Sum_probs=9.1
Q ss_pred HHhhcccEEeE
Q psy9306 67 VTALGGNAMVS 77 (98)
Q Consensus 67 V~alGGNAlls 77 (98)
|.|||||||+.
T Consensus 4 VialGGnal~~ 14 (307)
T PRK12354 4 VVALGGNALLR 14 (307)
T ss_pred EEEeccHHhCC
Confidence 56899999975
No 23
>PF07536 HWE_HK: HWE histidine kinase; InterPro: IPR011102 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. The HWE domain is found in a subset of two-component system kinases, belonging to the same superfamily as IPR003661 from INTERPRO []. In [], the HWE family was defined by the presence of conserved a H residue and a WXE motifs and was limited to members of the proteobacteria. However, many homologues of this domain are lack the WXE motif. Furthermore, homologues are found in a wide range of Gram-positive and Gram-negative bacteria as well as in several archaea.; GO: 0004673 protein histidine kinase activity
Probab=25.22 E-value=78 Score=20.68 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=25.2
Q ss_pred eeeecCCcchhHHHHHHHHHHHHHHHHHhhc
Q psy9306 41 CIRESGGLSGFVHSFVTEVLAILRAHVTALG 71 (98)
Q Consensus 41 ~vre~ggl~~F~~~fi~Ev~aivrAhV~alG 71 (98)
+.|.......|...|..=+.|+.|||-....
T Consensus 20 t~r~~~s~~~~~~~~~~Rl~ALa~a~~ll~~ 50 (83)
T PF07536_consen 20 TARSAASVEEFAEAFSGRLQALARAHDLLSR 50 (83)
T ss_pred HcccCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3466777889999999999999999976433
No 24
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional
Probab=24.72 E-value=63 Score=26.71 Aligned_cols=30 Identities=17% Similarity=0.387 Sum_probs=24.9
Q ss_pred eEEEeeccccCCceeeEEeeeeeEEEEeeeee
Q psy9306 10 GVDITPLSYIAGGKIERYLGNLNFFFIRESNC 41 (98)
Q Consensus 10 ~V~iTPls~iPg~~i~kYLG~l~~hfIREst~ 41 (98)
.+-+.|..++||..- .+..+++-+|||.|.
T Consensus 87 yanvRP~r~~pg~~~--~~~~iD~vivREnte 116 (330)
T PRK14025 87 YANVRPVKSYKGVKC--LYPDIDYVIVRENTE 116 (330)
T ss_pred eEEEEEeecCCCCCC--ccCCcCEEEEEECCC
Confidence 467899999999664 348899999999986
No 25
>PF13642 DUF4144: protein structure with unknown function; PDB: 2L6O_A.
Probab=24.32 E-value=73 Score=22.19 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHhhcccEE
Q psy9306 53 HSFVTEVLAILRAHVTALGGNAM 75 (98)
Q Consensus 53 ~~fi~Ev~aivrAhV~alGGNAl 75 (98)
+--+.||.+.||||-.+.|=-++
T Consensus 63 ~lsl~ev~~LIq~H~~~~g~cC~ 85 (101)
T PF13642_consen 63 QLSLEEVTELIQAHAFSLGQCCI 85 (101)
T ss_dssp E--HHHHHHHHHHHHHHHT---S
T ss_pred cccHHHHHHHHHHHHHhcCCeee
Confidence 34689999999999999885443
No 26
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=23.71 E-value=69 Score=26.55 Aligned_cols=30 Identities=20% Similarity=0.362 Sum_probs=24.9
Q ss_pred eEEEeeccccCCceeeEEeeeeeEEEEeeeee
Q psy9306 10 GVDITPLSYIAGGKIERYLGNLNFFFIRESNC 41 (98)
Q Consensus 10 ~V~iTPls~iPg~~i~kYLG~l~~hfIREst~ 41 (98)
.+-+.|..++||..- -+..+++-+|||.|.
T Consensus 92 yanvRP~k~~~g~~~--~~~~iD~vivREnte 121 (334)
T PRK08997 92 YANVRPVLSFPGTKA--RYDNIDIITVRENTE 121 (334)
T ss_pred eEEEeecccCCCCCC--ccCCcCEEEEEeccC
Confidence 477899999999653 357899999999986
No 27
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=23.46 E-value=13 Score=30.37 Aligned_cols=11 Identities=64% Similarity=1.017 Sum_probs=8.7
Q ss_pred HHhhcccEEeE
Q psy9306 67 VTALGGNAMVS 77 (98)
Q Consensus 67 V~alGGNAlls 77 (98)
|-|||||||+.
T Consensus 3 vialgGnal~~ 13 (308)
T cd04235 3 VVALGGNALLR 13 (308)
T ss_pred EEEecHHHhCC
Confidence 45899999875
No 28
>PF13254 DUF4045: Domain of unknown function (DUF4045)
Probab=22.89 E-value=41 Score=29.13 Aligned_cols=12 Identities=50% Similarity=0.805 Sum_probs=9.9
Q ss_pred CCcchhHHHHHH
Q psy9306 46 GGLSGFVHSFVT 57 (98)
Q Consensus 46 ggl~~F~~~fi~ 57 (98)
-|||||+|+..+
T Consensus 7 KGlGGFVQSAMM 18 (418)
T PF13254_consen 7 KGLGGFVQSAMM 18 (418)
T ss_pred CcchhHHHHhhh
Confidence 599999999754
No 29
>KOG0777|consensus
Probab=22.83 E-value=92 Score=25.98 Aligned_cols=30 Identities=20% Similarity=0.386 Sum_probs=25.6
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHHhhcccE
Q psy9306 45 SGGLSGFVHSFVTEVLAILRAHVTALGGNA 74 (98)
Q Consensus 45 ~ggl~~F~~~fi~Ev~aivrAhV~alGGNA 74 (98)
.-|.=.+...|+-+.-|-+|..|++.|+|-
T Consensus 264 d~gSf~YTrn~l~~L~a~a~~~i~~~g~Np 293 (322)
T KOG0777|consen 264 DTGSFAYTRNFLNQLVAEARSMIKNDGENP 293 (322)
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 445556788999999999999999999995
No 30
>PF07448 Spp-24: Secreted phosphoprotein 24 (Spp-24); InterPro: IPR010892 This family represents a conserved region approximately 140 residues long within secreted phosphoprotein 24 (Spp-24), which seems to be restricted to vertebrates []. This is a non-collagenous protein found in bone that is related in sequence to the cystatin family of thiol protease inhibitors. This suggests that Spp-24 could function to modulate the thiol protease activities known to be involved in bone turnover. It is also possible that the intact form of Spp-24 found in bone could be a precursor to a biologically active peptide that coordinates an aspect of bone turnover [].; GO: 0046849 bone remodeling, 0005576 extracellular region
Probab=21.21 E-value=61 Score=24.33 Aligned_cols=14 Identities=50% Similarity=0.975 Sum_probs=12.2
Q ss_pred EEEeeeeeeeecCC
Q psy9306 34 FFIRESNCIRESGG 47 (98)
Q Consensus 34 hfIREst~vre~gg 47 (98)
|=||||+..|++|.
T Consensus 13 F~IrET~C~k~SG~ 26 (139)
T PF07448_consen 13 FSIRETTCRKDSGE 26 (139)
T ss_pred EEEeeeecccccCC
Confidence 45999999999984
Done!