Query psy9306
Match_columns 98
No_of_seqs 47 out of 49
Neff 3.6
Searched_HMMs 29240
Date Sat Aug 17 00:03:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9306.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9306hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vr4_A Hypothetical protein AP 98.0 2.4E-05 8.3E-10 53.3 7.4 75 12-86 2-88 (103)
2 1y2i_A Hypothetical protein S0 97.9 5.6E-05 1.9E-09 53.9 7.8 80 7-86 21-112 (133)
3 2jz7_A Selenium binding protei 97.3 9.6E-05 3.3E-09 49.4 2.6 55 10-83 6-60 (81)
4 3qkb_A Uncharacterized protein 81.8 3.7 0.00013 28.6 5.7 36 51-86 55-90 (111)
5 3kzf_A Carbamate kinase; argin 34.8 4.4 0.00015 32.1 -1.6 11 67-77 9-19 (317)
6 2y1b_A RCSF protein, putative 26.9 54 0.0018 23.1 3.1 57 18-87 43-99 (128)
7 2l3i_A Aoxki4A, antimicrobial 24.3 41 0.0014 18.3 1.7 18 49-66 11-28 (30)
8 3blx_A Isocitrate dehydrogenas 17.5 71 0.0024 25.4 2.4 29 10-40 104-132 (349)
9 1wpw_A 3-isopropylmalate dehyd 17.2 71 0.0024 25.2 2.3 30 10-41 91-120 (336)
10 3blx_B Isocitrate dehydrogenas 17.0 73 0.0025 25.4 2.4 30 10-41 110-139 (354)
No 1
>1vr4_A Hypothetical protein APC22750; structural genomics, pentamer, PSI, PR structure initiative, the midwest center for structural GEN MCSG; 2.09A {Bacillus cereus} SCOP: d.230.5.1 PDB: 2gtc_A
Probab=98.00 E-value=2.4e-05 Score=53.30 Aligned_cols=75 Identities=20% Similarity=0.219 Sum_probs=60.9
Q ss_pred EEeeccccCCceeeEEeeeeeEEEEeeeeeeee------------cCCcchhHHHHHHHHHHHHHHHHHhhcccEEeEEE
Q psy9306 12 DITPLSYIAGGKIERYLGNLNFFFIRESNCIRE------------SGGLSGFVHSFVTEVLAILRAHVTALGGNAMVSYT 79 (98)
Q Consensus 12 ~iTPls~iPg~~i~kYLG~l~~hfIREst~vre------------~ggl~~F~~~fi~Ev~aivrAhV~alGGNAllsy~ 79 (98)
++|..+.+||.+|.+|+|.+.=--|+-..-.|+ .++...-+.+.-.|++.=.+++.+++|+||+++.+
T Consensus 2 iitTt~~i~G~~I~~~lGiV~G~~v~~~n~~~d~~a~lr~i~GG~~~~y~~~l~~aR~~A~~rm~~~A~~lGAnAVVgvr 81 (103)
T 1vr4_A 2 IVTTTSGIQGKEIIEYIDIVNGEAIMGANIVRDLFASVRDVVGGRAGSYESKLKEARDIAMDEMKELAKQKGANAIVGVD 81 (103)
T ss_dssp EECSSSSBTTBCCCEEEEEEEEEEEECHHHHHTTCGGGSSEEETTTTSSSCTTHHHHHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred EEEcCCCcCCeEEEEEeeEEEEEEEEeechhhhHHHHhhHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 688999999999999999998887776543443 22333446677889999999999999999999999
Q ss_pred eeeEEEe
Q psy9306 80 MTHCILL 86 (98)
Q Consensus 80 i~~~~l~ 86 (98)
++.-.+.
T Consensus 82 ~d~~~i~ 88 (103)
T 1vr4_A 82 VDYEVVR 88 (103)
T ss_dssp EEEEEEG
T ss_pred EEeeeeC
Confidence 9998774
No 2
>1y2i_A Hypothetical protein S0862; structural genomics, pentamer, protein structure initiative, PSI, midwest center for structural genomics; 2.30A {Shigella flexneri 2a str} SCOP: d.230.5.1
Probab=97.88 E-value=5.6e-05 Score=53.88 Aligned_cols=80 Identities=18% Similarity=0.219 Sum_probs=59.5
Q ss_pred CcceEEEeeccccCCceeeEEeeeeeEEEEeeeeeeee---------cCCcchh---HHHHHHHHHHHHHHHHHhhcccE
Q psy9306 7 EHYGVDITPLSYIAGGKIERYLGNLNFFFIRESNCIRE---------SGGLSGF---VHSFVTEVLAILRAHVTALGGNA 74 (98)
Q Consensus 7 ~~~~V~iTPls~iPg~~i~kYLG~l~~hfIREst~vre---------~ggl~~F---~~~fi~Ev~aivrAhV~alGGNA 74 (98)
+...+++|..+.+||.+|.+|+|.+.=--|+-..-.|+ .|-+.++ +.+.-.|++.=.+++.+++|+||
T Consensus 21 ~~~~mivtTt~~i~G~~I~e~lGiV~G~~V~~~n~~kd~~a~lr~ivGG~~~~Y~~~l~~aR~~Al~rm~~~A~~lGAnA 100 (133)
T 1y2i_A 21 QSNAMQFSTTPTLEGLTIVEYCGVVTGEAILGANIFRDFFAGIRDIVGGRSGAYEKELRKAREIAFEELGSQARALGADA 100 (133)
T ss_dssp ----CEECSSSSCTTEEEEEEEEEEEEEEEECHHHHHHHTTTCCSEEETTTCTHHHHHHHHHHHHHHHHHHHHHHHTCSE
T ss_pred cCCceEEEeCCCcCCeEEEEEeeEEEEEEEEeechhhhHhHhhhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 44568899999999999999999988777775433333 2233333 33445788888889999999999
Q ss_pred EeEEEeeeEEEe
Q psy9306 75 MVSYTMTHCILL 86 (98)
Q Consensus 75 llsy~i~~~~l~ 86 (98)
+++.+++.-.+.
T Consensus 101 VVGvr~d~~~i~ 112 (133)
T 1y2i_A 101 VVGIDIDYETVG 112 (133)
T ss_dssp EEEEEEEEEEES
T ss_pred EEEEEEEeeeec
Confidence 999999998885
No 3
>2jz7_A Selenium binding protein; NMR {Methanococcus vannielii}
Probab=97.35 E-value=9.6e-05 Score=49.41 Aligned_cols=55 Identities=27% Similarity=0.317 Sum_probs=44.2
Q ss_pred eEEEeeccccCCceeeEEeeeeeEEEEeeeeeeeecCCcchhHHHHHHHHHHHHHHHHHhhcccEEeEEEeeeE
Q psy9306 10 GVDITPLSYIAGGKIERYLGNLNFFFIRESNCIRESGGLSGFVHSFVTEVLAILRAHVTALGGNAMVSYTMTHC 83 (98)
Q Consensus 10 ~V~iTPls~iPg~~i~kYLG~l~~hfIREst~vre~ggl~~F~~~fi~Ev~aivrAhV~alGGNAllsy~i~~~ 83 (98)
..++|..+.|||.+| +|+|.+.=--| .=.|++.=...+.+++|+||+++.+++.-
T Consensus 6 ~miitTT~~i~G~~I-~~lGiV~G~~v------------------aR~~A~~rm~e~A~~lGAnAVVgvr~d~~ 60 (81)
T 2jz7_A 6 KFIITTADEIPGLQL-YSLGIASTISD------------------NVDEIVENLRKQVKAKGGMGLIAFRITCA 60 (81)
T ss_dssp SSEEESSCCCTTSCC-EEEEEECCCCS------------------SHHHHHHHHHHHHHHTTCCEEECCCCCCC
T ss_pred cEEEEeCCCcCCcEE-EEEEEEEEEEe------------------hHHHHHHHHHHHHHHcCCCEEEEEEEEcc
Confidence 578999999999999 99998753222 34466666778999999999999998764
No 4
>3qkb_A Uncharacterized protein; beta/alpha-propeller, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.73A {Pediococcus pentosaceus}
Probab=81.82 E-value=3.7 Score=28.58 Aligned_cols=36 Identities=11% Similarity=0.253 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccEEeEEEeeeEEEe
Q psy9306 51 FVHSFVTEVLAILRAHVTALGGNAMVSYTMTHCILL 86 (98)
Q Consensus 51 F~~~fi~Ev~aivrAhV~alGGNAllsy~i~~~~l~ 86 (98)
-+.....|+..=...+..++|+||+++.|++.-.+-
T Consensus 55 ~~~ear~eA~~rM~e~A~~lGANAVIgvrfdts~i~ 90 (111)
T 3qkb_A 55 MFDQLFDEAKQKLKKKADLLEGDGIIGLKYNTEVVE 90 (111)
T ss_dssp GHHHHHHHHHHHHHHHHHHTTCSEEEEEEEEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCEEEEEEEEhhhhc
Confidence 455667788888889999999999999999988774
No 5
>3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803}
Probab=34.81 E-value=4.4 Score=32.12 Aligned_cols=11 Identities=73% Similarity=1.057 Sum_probs=8.8
Q ss_pred HHhhcccEEeE
Q psy9306 67 VTALGGNAMVS 77 (98)
Q Consensus 67 V~alGGNAlls 77 (98)
|.|||||||+.
T Consensus 9 vvalgGnal~~ 19 (317)
T 3kzf_A 9 VIALGGNAMLQ 19 (317)
T ss_dssp EEECCSTTTC-
T ss_pred EEEcChhhhCC
Confidence 67999999974
No 6
>2y1b_A RCSF protein, putative outer membrane protein, signal; phosphorelay, mucoidity, colanic acid; HET: I3C; 2.00A {Escherichia coli} PDB: 2l8y_A
Probab=26.92 E-value=54 Score=23.07 Aligned_cols=57 Identities=14% Similarity=0.183 Sum_probs=34.6
Q ss_pred ccCCceeeEEeeeeeEEEEeeeeeeeecCCcchhHHHHHHHHHHHHHHHHHhhcccEEeEEEeeeEEEee
Q psy9306 18 YIAGGKIERYLGNLNFFFIRESNCIRESGGLSGFVHSFVTEVLAILRAHVTALGGNAMVSYTMTHCILLN 87 (98)
Q Consensus 18 ~iPg~~i~kYLG~l~~hfIREst~vre~ggl~~F~~~fi~Ev~aivrAhV~alGGNAllsy~i~~~~l~d 87 (98)
-++|.. -++||.|+==-=+.+ ..+ ... -+.++.=-+|.-+..|||||++ +.+|.+.+
T Consensus 43 el~~~~-~~~LG~VsGeSCQ~~----~~d-~Pa----sis~Ar~~lr~kAa~~gANaVl---l~qC~~~~ 99 (128)
T 2y1b_A 43 ELVGKP-FRDLGEVSGDSCQAS----NQD-SPP----SIPTARKRMQINASKMKANAVL---LHSCEVTS 99 (128)
T ss_dssp GGTTCC-EEEEEEEEEEEEECS----TTS-CCC----CHHHHHHHHHHHHHHTTCSEEE---EEEEEEES
T ss_pred HhcCCC-CceeeeEecccccCC----CCC-CCC----CHHHHHHHHHHHHHHcCCCEEE---EEeeeccC
Confidence 445544 367887764333322 221 111 1446777788889999999987 66787765
No 7
>2l3i_A Aoxki4A, antimicrobial peptide in spider venom; antimicrobial protein; NMR {Araneae}
Probab=24.33 E-value=41 Score=18.29 Aligned_cols=18 Identities=33% Similarity=0.639 Sum_probs=16.3
Q ss_pred chhHHHHHHHHHHHHHHH
Q psy9306 49 SGFVHSFVTEVLAILRAH 66 (98)
Q Consensus 49 ~~F~~~fi~Ev~aivrAh 66 (98)
..|-|+.+-..+||+|-|
T Consensus 11 kafkqrvlkrllamlrqh 28 (30)
T 2l3i_A 11 KAFKQRVLKRLLAMLRQH 28 (30)
T ss_dssp CHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 479999999999999987
No 8
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=17.48 E-value=71 Score=25.40 Aligned_cols=29 Identities=17% Similarity=0.369 Sum_probs=23.7
Q ss_pred eEEEeeccccCCceeeEEeeeeeEEEEeeee
Q psy9306 10 GVDITPLSYIAGGKIERYLGNLNFFFIRESN 40 (98)
Q Consensus 10 ~V~iTPls~iPg~~i~kYLG~l~~hfIREst 40 (98)
.+-+.|...+||.. .-++.+++-+|||.|
T Consensus 104 yan~RP~~~~pg~~--~~~~~vD~vivREnt 132 (349)
T 3blx_A 104 YANVALFKSLKGVK--TRIPDIDLIVIRENT 132 (349)
T ss_dssp EEEEEEEECCTTCC--CSSCSCEEEEEEECS
T ss_pred EEEEEEEeccCCCC--CCCCCcCEEEEecCC
Confidence 46788999999975 334789999999988
No 9
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1
Probab=17.18 E-value=71 Score=25.23 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=24.1
Q ss_pred eEEEeeccccCCceeeEEeeeeeEEEEeeeee
Q psy9306 10 GVDITPLSYIAGGKIERYLGNLNFFFIRESNC 41 (98)
Q Consensus 10 ~V~iTPls~iPg~~i~kYLG~l~~hfIREst~ 41 (98)
.+-+.|...+||.. .-++.+++-+|||.|.
T Consensus 91 yan~RP~~~~pg~~--~~~~~~D~vivREnte 120 (336)
T 1wpw_A 91 YANIRPAKSIPGID--TKYGNVDILIVRENTE 120 (336)
T ss_dssp CEEEEEEECCTTTC--CSCSCCEEEEEEECSS
T ss_pred EEEEEEEeccCCCC--CCCCCCcEEEEecCcc
Confidence 46788999999975 3347899999999983
No 10
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B
Probab=17.03 E-value=73 Score=25.35 Aligned_cols=30 Identities=27% Similarity=0.367 Sum_probs=24.2
Q ss_pred eEEEeeccccCCceeeEEeeeeeEEEEeeeee
Q psy9306 10 GVDITPLSYIAGGKIERYLGNLNFFFIRESNC 41 (98)
Q Consensus 10 ~V~iTPls~iPg~~i~kYLG~l~~hfIREst~ 41 (98)
.+-+.|...+||.. .-++.+++-+|||.|.
T Consensus 110 yan~RP~~~~pg~~--s~~~~vD~vivREnte 139 (354)
T 3blx_B 110 FANVRPAKSIEGFK--TTYENVDLVLIRENTE 139 (354)
T ss_dssp EEEEEEEECCTTCC--CSSCSCEEEEEEECSS
T ss_pred EEEEEEecccCCCC--CCCCCccEEEEecCcC
Confidence 46788998999975 3347899999999983
Done!