RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy9306
         (98 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.0 bits (67), Expect = 0.100
 Identities = 22/147 (14%), Positives = 44/147 (29%), Gaps = 65/147 (44%)

Query: 2   ITPPKEHYGVDITP----------LSYIA-------GGKIERYLGN-LNFFFIRESNCIR 43
           +  P E +  D  P          L Y++        G+ ++ L   L  F   E+  + 
Sbjct: 41  LPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF---ENCYLE 97

Query: 44  ESGGLSGFVHSFVTEVLA-----------ILRAHVTALG--------------------G 72
            +      +H+   ++L            +++ ++TA                      G
Sbjct: 98  GND-----IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEG 152

Query: 73  NAMVSYTMTHCILLNNQGKNQ--VKEL 97
           NA +        +   QG      +EL
Sbjct: 153 NAQL-VA-----IFGGQGNTDDYFEEL 173


>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial;
           triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein,
           membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A
           {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A*
           3sfk_A*
          Length = 415

 Score = 25.3 bits (56), Expect = 3.8
 Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 5/28 (17%)

Query: 43  RESGGLSG---FVHSFVTEVLAILRAHV 67
            + GG+SG      S  T+ +  +  + 
Sbjct: 317 NKKGGVSGAKLKDIS--TKFICEMYNYT 342


>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase;
           HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A*
           2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A*
           3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A*
           2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
          Length = 367

 Score = 25.2 bits (56), Expect = 4.0
 Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 5/27 (18%)

Query: 44  ESGGLSG---FVHSFVTEVLAILRAHV 67
           E+GGLSG      S  T+ +  + A  
Sbjct: 271 ETGGLSGKPLRDLS--TQTIREMYALT 295


>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN
           binding domain, orotate complex, oxidoreductase; HET:
           MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
          Length = 336

 Score = 25.2 bits (56), Expect = 4.1
 Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 5/27 (18%)

Query: 44  ESGGLSG---FVHSFVTEVLAILRAHV 67
           ++GGLSG    + S  TE++  L   +
Sbjct: 262 QTGGLSGRPLQLKS--TEIIRRLSLEL 286


>2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP
          synthesys, open alpha/beta sheet, phosphotransferase,
          transferase; HET: ADP; 1.39A {Enterococcus faecalis}
          PDB: 1b7b_A 2we4_A*
          Length = 310

 Score = 24.8 bits (54), Expect = 5.8
 Identities = 8/11 (72%), Positives = 10/11 (90%)

Query: 67 VTALGGNAMVS 77
          V ALGGNA++S
Sbjct: 6  VVALGGNAILS 16


>2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA,
          national project O structural and functional analyses;
          1.80A {Aeropyrum pernix}
          Length = 316

 Score = 24.6 bits (53), Expect = 7.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)

Query: 67 VTALGGNAMVS 77
          V ALGGNA+  
Sbjct: 8  VIALGGNAIAG 18


>3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB
          target, transferase; 3.00A {Giardia lamblia atcc 50803}
          Length = 317

 Score = 24.3 bits (52), Expect = 8.0
 Identities = 8/11 (72%), Positives = 9/11 (81%)

Query: 67 VTALGGNAMVS 77
          V ALGGNAM+ 
Sbjct: 9  VIALGGNAMLQ 19


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.324    0.140    0.419 

Gapped
Lambda     K      H
   0.267   0.0814    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,528,814
Number of extensions: 79394
Number of successful extensions: 148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 17
Length of query: 98
Length of database: 6,701,793
Length adjustment: 64
Effective length of query: 34
Effective length of database: 4,914,849
Effective search space: 167104866
Effective search space used: 167104866
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.3 bits)