RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9306
         (98 letters)



>d1r9ja1 c.36.1.6 (A:337-526) Transketolase (TK), Pyr module
           {Leishmania mexicana mexicana [TaxId: 44270]}
          Length = 190

 Score = 23.6 bits (50), Expect = 4.6
 Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 6/71 (8%)

Query: 25  ERYLGNLNFFFIRE------SNCIRESGGLSGFVHSFVTEVLAILRAHVTALGGNAMVSY 78
               G    F +RE       N +    G+  F  +F+  +   L A   A   +  V Y
Sbjct: 60  SSKEGRYIRFGVREHAMCAILNGLDAHDGIIPFGGTFLNFIGYALGAVRLAAISHHRVIY 119

Query: 79  TMTHCILLNNQ 89
             TH  +   +
Sbjct: 120 VATHDSIGVGE 130


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.140    0.419 

Gapped
Lambda     K      H
   0.267   0.0597    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 369,962
Number of extensions: 14859
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 7
Length of query: 98
Length of database: 2,407,596
Length adjustment: 60
Effective length of query: 38
Effective length of database: 1,583,796
Effective search space: 60184248
Effective search space used: 60184248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.2 bits)