Query psy931
Match_columns 108
No_of_seqs 133 out of 1024
Neff 8.8
Searched_HMMs 46136
Date Sat Aug 17 00:07:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy931.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/931hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1287|consensus 99.8 1.2E-18 2.7E-23 128.8 10.4 106 2-107 55-160 (479)
2 TIGR00911 2A0308 L-type amino 99.7 1.9E-17 4E-22 124.0 11.3 106 2-107 85-190 (501)
3 PRK10655 potE putrescine trans 99.7 9.4E-17 2E-21 118.4 10.7 103 2-107 46-148 (438)
4 PRK10644 arginine:agmatin anti 99.7 1.9E-16 4.1E-21 117.0 10.7 103 2-107 48-150 (445)
5 TIGR00908 2A0305 ethanolamine 99.7 3.4E-16 7.4E-21 115.5 10.2 97 4-107 50-146 (442)
6 TIGR00905 2A0302 transporter, 99.7 3.4E-16 7.3E-21 116.6 9.9 104 2-107 49-154 (473)
7 PF13520 AA_permease_2: Amino 99.7 4.9E-16 1.1E-20 113.7 10.0 100 7-107 44-143 (426)
8 PRK10435 cadB lysine/cadaverin 99.7 6.5E-16 1.4E-20 114.1 10.6 102 2-107 45-146 (435)
9 PRK11021 putative transporter; 99.7 6.7E-16 1.5E-20 113.1 10.0 101 2-107 40-140 (410)
10 TIGR03428 ureacarb_perm permea 99.7 8.6E-16 1.9E-20 114.5 10.5 105 2-107 55-169 (475)
11 PRK10249 phenylalanine transpo 99.7 1.6E-15 3.4E-20 112.7 10.9 99 2-107 62-160 (458)
12 PRK10197 gamma-aminobutyrate t 99.6 1.6E-15 3.5E-20 112.4 10.5 99 2-107 33-131 (446)
13 TIGR01773 GABAperm gamma-amino 99.6 2E-15 4.4E-20 111.8 10.9 99 2-107 53-151 (452)
14 PRK11357 frlA putative fructos 99.6 1.9E-15 4.2E-20 111.7 10.5 102 2-107 51-152 (445)
15 TIGR00906 2A0303 cationic amin 99.6 1.3E-15 2.9E-20 115.6 9.7 105 2-107 70-186 (557)
16 PRK11387 S-methylmethionine tr 99.6 2E-15 4.4E-20 112.4 10.1 98 2-106 56-153 (471)
17 PRK10238 aromatic amino acid t 99.6 2.4E-15 5.3E-20 111.7 10.2 99 2-107 53-151 (456)
18 TIGR03810 arg_ornith_anti argi 99.6 3.5E-15 7.6E-20 111.0 10.6 104 2-107 43-148 (468)
19 PRK10746 putative transport pr 99.6 3.6E-15 7.8E-20 111.0 10.4 99 2-107 51-149 (461)
20 PRK15049 L-asparagine permease 99.6 4.3E-15 9.2E-20 111.6 10.4 101 2-107 69-169 (499)
21 TIGR00907 2A0304 amino acid pe 99.6 3.8E-15 8.2E-20 111.1 9.4 105 2-107 55-168 (482)
22 PRK10580 proY putative proline 99.6 1E-14 2.2E-19 108.2 10.4 99 2-107 50-148 (457)
23 PRK10836 lysine transporter; P 99.6 2.4E-14 5.3E-19 107.1 10.7 99 2-107 57-155 (489)
24 TIGR00930 2a30 K-Cl cotranspor 99.6 1.3E-14 2.7E-19 115.6 9.1 104 2-107 119-228 (953)
25 TIGR00910 2A0307_GadC glutamat 99.6 2.4E-14 5.2E-19 107.8 9.8 99 7-107 47-148 (507)
26 TIGR03813 put_Glu_GABA_T putat 99.6 3.1E-14 6.8E-19 106.1 10.3 100 7-107 44-148 (474)
27 TIGR00909 2A0306 amino acid tr 99.6 2.6E-14 5.6E-19 105.0 9.6 104 2-107 44-158 (429)
28 TIGR00913 2A0310 amino acid pe 99.5 9.5E-14 2.1E-18 103.4 10.6 99 2-107 44-143 (478)
29 COG0531 PotE Amino acid transp 99.5 7.7E-14 1.7E-18 102.7 9.8 103 3-107 54-159 (466)
30 PRK15238 inner membrane transp 99.5 3.7E-13 8E-18 100.9 10.5 103 5-107 49-160 (496)
31 PRK11049 D-alanine/D-serine/gl 99.5 4.5E-13 9.7E-18 99.9 10.4 99 2-107 61-159 (469)
32 KOG1289|consensus 99.4 9.4E-13 2E-17 98.6 7.0 105 2-107 91-202 (550)
33 COG1113 AnsP Gamma-aminobutyra 99.4 5.2E-12 1.1E-16 93.1 9.9 98 2-106 54-151 (462)
34 PF00324 AA_permease: Amino ac 99.3 8.4E-13 1.8E-17 98.4 3.7 104 2-107 37-142 (478)
35 PHA02764 hypothetical protein; 99.3 3.2E-12 6.8E-17 90.8 4.6 57 2-59 54-110 (399)
36 TIGR00837 araaP aromatic amino 99.3 2.3E-11 4.9E-16 88.4 8.4 103 3-107 37-139 (381)
37 KOG1286|consensus 99.2 5.5E-11 1.2E-15 90.4 8.7 68 2-70 72-140 (554)
38 COG0833 LysP Amino acid transp 99.2 1.5E-10 3.3E-15 86.9 10.6 98 2-105 86-183 (541)
39 TIGR00912 2A0309 spore germina 98.9 1.9E-08 4.1E-13 72.6 10.0 99 2-107 42-140 (359)
40 TIGR00796 livcs branched-chain 98.0 7.9E-05 1.7E-09 54.8 9.5 84 20-107 49-136 (378)
41 TIGR00814 stp serine transport 97.9 0.00012 2.6E-09 54.2 9.5 95 10-107 50-147 (397)
42 PF03222 Trp_Tyr_perm: Tryptop 97.1 0.0044 9.5E-08 45.9 8.3 101 4-106 44-144 (394)
43 PF03845 Spore_permease: Spore 97.0 0.014 3.1E-07 41.7 10.2 98 2-106 40-137 (320)
44 KOG2083|consensus 96.5 0.0054 1.2E-07 47.5 4.9 102 2-107 71-173 (643)
45 PRK15132 tyrosine transporter 96.4 0.026 5.6E-07 42.1 8.1 96 6-106 46-144 (403)
46 PRK13629 threonine/serine tran 96.4 0.057 1.2E-06 40.8 9.4 101 5-106 61-162 (443)
47 COG0814 SdaC Amino acid permea 96.2 0.06 1.3E-06 40.2 8.8 103 2-106 48-152 (415)
48 PRK10483 tryptophan permease; 95.8 0.12 2.5E-06 38.8 8.7 100 4-106 52-151 (414)
49 PRK09664 tryptophan permease T 95.7 0.15 3.3E-06 38.2 9.0 99 3-106 49-150 (415)
50 KOG1288|consensus 91.4 0.34 7.3E-06 38.8 4.2 99 7-106 113-221 (945)
51 KOG2082|consensus 89.0 0.57 1.2E-05 38.0 3.6 99 8-107 161-272 (1075)
52 TIGR00835 agcS amino acid carr 86.4 10 0.00022 28.8 8.8 75 25-107 116-191 (425)
53 COG1115 AlsT Na+/alanine sympo 82.9 17 0.00036 27.9 8.5 91 9-106 109-207 (452)
54 PF01235 Na_Ala_symp: Sodium:a 80.0 18 0.0004 27.4 7.9 76 24-106 87-163 (416)
55 PF13317 DUF4088: Protein of u 46.8 9.6 0.00021 25.9 0.8 16 23-38 49-64 (229)
56 KOG3659|consensus 26.3 95 0.0021 24.9 3.4 29 80-108 252-280 (629)
57 TIGR02358 thia_cytX probable h 25.9 2.8E+02 0.006 20.5 8.5 58 11-69 43-101 (386)
58 PF12051 DUF3533: Protein of u 22.0 3.3E+02 0.0072 20.1 5.8 38 4-48 253-290 (382)
No 1
>KOG1287|consensus
Probab=99.78 E-value=1.2e-18 Score=128.83 Aligned_cols=106 Identities=50% Similarity=0.845 Sum_probs=97.4
Q ss_pred chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy931 2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA 81 (108)
Q Consensus 2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~ 81 (108)
.+++.+...++||+||++++|++||+|.|..+.|||.++|...|..++...+...+..+.++++|....++|.++.|+..
T Consensus 55 ~~gi~s~~galcyaELGT~ipksGgd~ayi~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~c~~p~~~ 134 (479)
T KOG1287|consen 55 FCGIISIIGALCYAELGTSIPKSGGDYAYISEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPLCDVPRVA 134 (479)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCcchhhHHHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCCCCCchHH
Confidence 35778999999999999999999999999999999999999999998877788889999999999666678877788899
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccc
Q psy931 82 VRLLAAVITCLLTAINCYNKYHLTCS 107 (108)
Q Consensus 82 ~~~i~~~~i~l~~~iN~~g~k~~~~i 107 (108)
.++++..++++++.+|+.++|+..|+
T Consensus 135 ~~lla~~~l~~lt~~n~~~V~~a~~v 160 (479)
T KOG1287|consen 135 SKLLAAALLVLLTLINSFSVKWATRV 160 (479)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 99999999999999999999988764
No 2
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.75 E-value=1.9e-17 Score=124.00 Aligned_cols=106 Identities=45% Similarity=0.746 Sum_probs=89.9
Q ss_pred chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy931 2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA 81 (108)
Q Consensus 2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~ 81 (108)
++.+.+++.+++++||++++|++||.|+|+++.+||..||+.+|..+..+.+...+..+..+++|+.+.++|+...+++.
T Consensus 85 i~~i~~~~~al~~aELas~~P~sGG~y~~~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~ 164 (501)
T TIGR00911 85 VCGIFSIVGALVYAELGTTIPKSGGEYNYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEWA 164 (501)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCchhhhHHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHH
Confidence 45677899999999999999999999999999999999999999987655566777888888998765445765555666
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccc
Q psy931 82 VRLLAAVITCLLTAINCYNKYHLTCS 107 (108)
Q Consensus 82 ~~~i~~~~i~l~~~iN~~g~k~~~~i 107 (108)
..+++++++++.+.+|++|+|..+|+
T Consensus 165 ~~~i~~~~i~~~~~ln~~Gvk~~~~~ 190 (501)
T TIGR00911 165 IRLVAVLCVLLLTLVNCLSVKWATRV 190 (501)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 77888889999999999999998874
No 3
>PRK10655 potE putrescine transporter; Provisional
Probab=99.71 E-value=9.4e-17 Score=118.36 Aligned_cols=103 Identities=17% Similarity=0.113 Sum_probs=84.1
Q ss_pred chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy931 2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA 81 (108)
Q Consensus 2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~ 81 (108)
++.+.+++++++|+|+++++|++||.|.|+++.+||..||+.||.+++.+ .......+.+..+|+.. ++|. +.+++.
T Consensus 46 i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~-~~~~~~~a~~~~~y~~~-~~~~-~~~~~~ 122 (438)
T PRK10655 46 VTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGKSGNFMANYTYGVSL-LIANVAIAISAVGYGTE-LFGA-TLSPVQ 122 (438)
T ss_pred HHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcCcchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hccc-ccchHH
Confidence 46778899999999999999999999999999999999999999998865 33444556677788876 4563 233455
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccc
Q psy931 82 VRLLAAVITCLLTAINCYNKYHLTCS 107 (108)
Q Consensus 82 ~~~i~~~~i~l~~~iN~~g~k~~~~i 107 (108)
..+..++++++++.+|++|+|..+|+
T Consensus 123 ~~~~~~~~l~~~~~ln~~g~~~~~~i 148 (438)
T PRK10655 123 ICLATIGVLWLCTVANFGGARITGQI 148 (438)
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 56677788899999999999998874
No 4
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.70 E-value=1.9e-16 Score=117.05 Aligned_cols=103 Identities=17% Similarity=0.275 Sum_probs=81.3
Q ss_pred chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy931 2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA 81 (108)
Q Consensus 2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~ 81 (108)
+..+.+++.+++++||++++|++||.|+|+++.+||..||+.||.+|+.+. ............|... ++|..+ +++.
T Consensus 48 i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~~g~~~gf~~gw~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~-~~~~ 124 (445)
T PRK10644 48 VTIIGALGLSMVYAKMSSLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACW-IGNIAMVVIGVGYLSY-FFPILK-DPLV 124 (445)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHHcCchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HhcccC-CcHH
Confidence 456788999999999999999999999999999999999999999998653 3344444455567664 456432 2344
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccc
Q psy931 82 VRLLAAVITCLLTAINCYNKYHLTCS 107 (108)
Q Consensus 82 ~~~i~~~~i~l~~~iN~~g~k~~~~i 107 (108)
..++.++++++++.+|++|+|..+|+
T Consensus 125 ~~~~~~~~~~~~~~ln~~gvk~~~~i 150 (445)
T PRK10644 125 LTITCVVVLWIFVLLNIVGPKMITRV 150 (445)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 55677788889999999999998874
No 5
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.68 E-value=3.4e-16 Score=115.49 Aligned_cols=97 Identities=26% Similarity=0.314 Sum_probs=82.0
Q ss_pred HHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHHHH
Q psy931 4 LREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVR 83 (108)
Q Consensus 4 ~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~ 83 (108)
.+.+++.+++++|+++++|++||.|.|+++.+||..||+.||.+++.+ ....+.++..+++|+.. ++|+. + ..
T Consensus 50 ~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~~~~G~~~gf~~gw~~~~~~-~~~~~~~a~~~~~~l~~-~~p~~--~---~~ 122 (442)
T TIGR00908 50 ATMYLTFCFSLAELSTMIPTAGGGYGFARRAFGPWGGFLAGTAILIEF-AFAPPAIACFIGAYCES-LFPVG--P---GW 122 (442)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HhccC--c---hh
Confidence 445678899999999999999999999999999999999999999876 66778888999999986 45643 2 24
Q ss_pred HHHHHHHHHHHHHHHhcccccccc
Q psy931 84 LLAAVITCLLTAINCYNKYHLTCS 107 (108)
Q Consensus 84 ~i~~~~i~l~~~iN~~g~k~~~~i 107 (108)
..+.+++++++.+|++|+|..+|+
T Consensus 123 ~~~~~~~~~~~~ln~~g~~~~~~i 146 (442)
T TIGR00908 123 LAALVFYIVFIGINILGVGEAAKL 146 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 566677888899999999998874
No 6
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.68 E-value=3.4e-16 Score=116.59 Aligned_cols=104 Identities=23% Similarity=0.229 Sum_probs=83.4
Q ss_pred chHHHHHHhhHHHHhccccccc-CCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCC-CCh
Q psy931 2 LTLREAYYRMFPPESLGTMIPK-SGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCD-PPY 79 (108)
Q Consensus 2 ~~~~~al~~a~~~ael~s~~P~-~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~-~~~ 79 (108)
++.+.+++.+++|+|+++++|+ +||.|+|+++.+||..||+.||.+++.+ .......+....+|+.. ++|..+ .++
T Consensus 49 i~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~G~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~l~~-~~p~~~~~~~ 126 (473)
T TIGR00905 49 ITGVGMLALAFVFAILATKKPELDGGIYAYAREGFGPYIGFMSGWGYWLSA-WIGNVAYAVLLFSALGY-FFPLFGSGNP 126 (473)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcccccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HhhhhcCCCc
Confidence 4567788999999999999999 9999999999999999999999998765 44455566666777765 446332 223
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccc
Q psy931 80 SAVRLLAAVITCLLTAINCYNKYHLTCS 107 (108)
Q Consensus 80 ~~~~~i~~~~i~l~~~iN~~g~k~~~~i 107 (108)
++..+.++.++++.+.+|++|+|..+|+
T Consensus 127 ~~~~~~~~~~~~~~~~ln~~Gi~~~~~i 154 (473)
T TIGR00905 127 VPSILGASVLLWVFTFLVLRGVRQAAFI 154 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 4556777888889999999999998874
No 7
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.67 E-value=4.9e-16 Score=113.74 Aligned_cols=100 Identities=24% Similarity=0.341 Sum_probs=84.9
Q ss_pred HHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHHHHHHH
Q psy931 7 AYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLA 86 (108)
Q Consensus 7 al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~i~ 86 (108)
.++.+++|+|+++++|++||.|.|+++.+||++||+.+|.+++.+ ....+......++|+...+.|+.++.+++...++
T Consensus 44 ~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 122 (426)
T PF13520_consen 44 FLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWGFIVGWLYWVAY-ILSLASVASSFASYLLSLFGPDLNPSPWPQFLIA 122 (426)
T ss_dssp HHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTTTTTGGGTCSHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcCeeeehhhhcccccchhcccceeEEEe-eccccccccchhhhhhhccccccccccchheeee
Confidence 378999999999999999999999999999999999999999986 5566677788899998754444444456778889
Q ss_pred HHHHHHHHHHHHhcccccccc
Q psy931 87 AVITCLLTAINCYNKYHLTCS 107 (108)
Q Consensus 87 ~~~i~l~~~iN~~g~k~~~~i 107 (108)
++++++.+.+|++|.|..+|+
T Consensus 123 ~~~~~~~~~l~~~g~~~~~~~ 143 (426)
T PF13520_consen 123 IILILLFTLLNLLGIKLSGKI 143 (426)
T ss_dssp HHHHHHHHHHHHTTHHHHHHH
T ss_pred ecccccceEeeechhhhhhhh
Confidence 999999999999999998874
No 8
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.67 E-value=6.5e-16 Score=114.07 Aligned_cols=102 Identities=19% Similarity=0.222 Sum_probs=81.5
Q ss_pred chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy931 2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA 81 (108)
Q Consensus 2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~ 81 (108)
++++.+++.+++++||++++|++||.|+|++| +||.+||..||.+|... .......+....+|+.. ++|..+. +..
T Consensus 45 i~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~g~~~gf~~gw~~~~~~-~~~~~~~~~~~~~y~~~-~~p~~~~-~~~ 120 (435)
T PRK10435 45 ISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-ISPAFGFQTGVLYYHAN-WIGNLAIGITAVSYLST-FFPVLND-PIP 120 (435)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-HCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HccccCC-hHH
Confidence 45778999999999999999999999999999 99999999999988643 23445556777788876 4575432 234
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccc
Q psy931 82 VRLLAAVITCLLTAINCYNKYHLTCS 107 (108)
Q Consensus 82 ~~~i~~~~i~l~~~iN~~g~k~~~~i 107 (108)
..++++.++++++.+|++|+|..+++
T Consensus 121 ~~~~~~~i~~~~~~ln~~gvk~~~~i 146 (435)
T PRK10435 121 AGIACIAIVWVFTFVNMLGGTWVSRL 146 (435)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45667778889999999999988764
No 9
>PRK11021 putative transporter; Provisional
Probab=99.66 E-value=6.7e-16 Score=113.06 Aligned_cols=101 Identities=21% Similarity=0.234 Sum_probs=79.2
Q ss_pred chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy931 2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA 81 (108)
Q Consensus 2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~ 81 (108)
++.+.+++.+++++|+++++|++||.|.|+++.+||+.||+.||.++..+ +...+.......+|... .+|.. ++.
T Consensus 40 i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~---~~~ 114 (410)
T PRK11021 40 LLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLGRVTGWLFLSVI-PVGLPAALQIAAGFGQA-LFGWS---SWQ 114 (410)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhHHHHHHHHHHHH-HhhHHHHHHHHHHHHHH-HcCCC---Cch
Confidence 46778999999999999999999999999999999999999999998764 33333333344566665 34532 233
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccc
Q psy931 82 VRLLAAVITCLLTAINCYNKYHLTCS 107 (108)
Q Consensus 82 ~~~i~~~~i~l~~~iN~~g~k~~~~i 107 (108)
...++.+++++.+.+|++|+|.++|+
T Consensus 115 ~~~~~~~~~~~~~~ln~~Gv~~~~~~ 140 (410)
T PRK11021 115 LLLAELLTLALLWLLNLRGASSSANL 140 (410)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 45667778888999999999998874
No 10
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.66 E-value=8.6e-16 Score=114.49 Aligned_cols=105 Identities=18% Similarity=0.248 Sum_probs=80.9
Q ss_pred chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhh-----C---C
Q psy931 2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPI-----W---P 73 (108)
Q Consensus 2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~-----~---~ 73 (108)
+..+.+++++++++||++++|++||.|+|+++.+||..||++||.+++.+ ....+..+.....++...+ . |
T Consensus 55 i~~i~~l~~als~aEL~s~~P~aGG~Y~~~~~~~g~~~gf~~gW~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (475)
T TIGR03428 55 VVFVGQLLVALNFAELAARYPISGAIYQWSRRMGGEVIGWFAGWFMIIAQ-IVTAAAAAIALQVVLPNIWSGFQIIGEDP 133 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHcCccccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhcccCc
Confidence 45678899999999999999999999999999999999999999999876 4455555666555543211 0 1
Q ss_pred CCC-C-ChHHHHHHHHHHHHHHHHHHHhcccccccc
Q psy931 74 HCD-P-PYSAVRLLAAVITCLLTAINCYNKYHLTCS 107 (108)
Q Consensus 74 ~~~-~-~~~~~~~i~~~~i~l~~~iN~~g~k~~~~i 107 (108)
++. + +.++..+++.+++++.+.+|++|+|..+|+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~in~~g~k~~~~i 169 (475)
T TIGR03428 134 TLTSPSGAANAVLLGSVLLVLTTVINCIGVEWMSRV 169 (475)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 111 1 124566778888889999999999998774
No 11
>PRK10249 phenylalanine transporter; Provisional
Probab=99.65 E-value=1.6e-15 Score=112.75 Aligned_cols=99 Identities=18% Similarity=0.211 Sum_probs=81.7
Q ss_pred chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy931 2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA 81 (108)
Q Consensus 2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~ 81 (108)
+..+.+++++++++||++++|++||.|.|+++.+||..||+.||.+|+.+ ....+.+....+.|+.. ++|+. +
T Consensus 62 i~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~~~g~~~gf~~gw~~~~~~-~~~~~~~~~a~~~~~~~-~~~~~--~--- 134 (458)
T PRK10249 62 VAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKYWGPFAGFLSGWNYWVMF-VLVGMAELTAAGIYMQY-WFPDV--P--- 134 (458)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-cCCcC--c---
Confidence 45778999999999999999999999999999999999999999999876 44556666677778775 44532 2
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccc
Q psy931 82 VRLLAAVITCLLTAINCYNKYHLTCS 107 (108)
Q Consensus 82 ~~~i~~~~i~l~~~iN~~g~k~~~~i 107 (108)
......+++++.+.+|++|+|..+|+
T Consensus 135 ~~~~~~~~~~l~~~lN~~gv~~~~~i 160 (458)
T PRK10249 135 TWIWAAAFFIIINAVNLVNVRLYGET 160 (458)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhhhH
Confidence 34456777889999999999998874
No 12
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.65 E-value=1.6e-15 Score=112.36 Aligned_cols=99 Identities=17% Similarity=0.133 Sum_probs=81.1
Q ss_pred chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy931 2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA 81 (108)
Q Consensus 2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~ 81 (108)
++++.+++.+++++||++++|++||.|.|++|.+||..||..||.+++.+ ....+.++...+.++.. +.|+. .
T Consensus 33 i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~-----~ 105 (446)
T PRK10197 33 FAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFW-VLVIPLEANIAAMILHS-WVPGI-----P 105 (446)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh-ccccC-----c
Confidence 46788999999999999999999999999999999999999999999875 44566666666666554 33422 2
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccc
Q psy931 82 VRLLAAVITCLLTAINCYNKYHLTCS 107 (108)
Q Consensus 82 ~~~i~~~~i~l~~~iN~~g~k~~~~i 107 (108)
...++.+++++++.+|++|+|..+++
T Consensus 106 ~~~~~~~~l~~~~~lN~~gv~~~~~i 131 (446)
T PRK10197 106 IWLFSLVITLALTGSNLLSVKNYGEF 131 (446)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHhhh
Confidence 45678888999999999999998764
No 13
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.65 E-value=2e-15 Score=111.76 Aligned_cols=99 Identities=19% Similarity=0.250 Sum_probs=83.9
Q ss_pred chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy931 2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA 81 (108)
Q Consensus 2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~ 81 (108)
+..+.+++++++++||++++|++||.|.|+++.+||..||+.||.+++.+ ....+.++...++++.. ++|+. +
T Consensus 53 i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~~g~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~l~~-~~~~~--~--- 125 (452)
T TIGR01773 53 LAGLLVVFIMRMLGEMAVANPDTGSFSTYADDAIGRWAGFTIGWLYWWFW-VLVIPLEAIAAAGILQY-WFPDI--P--- 125 (452)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hcCcC--c---
Confidence 45678899999999999999999999999999999999999999999876 55677788888888875 44642 2
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccc
Q psy931 82 VRLLAAVITCLLTAINCYNKYHLTCS 107 (108)
Q Consensus 82 ~~~i~~~~i~l~~~iN~~g~k~~~~i 107 (108)
....+++++++.+.+|++|+|..+|+
T Consensus 126 ~~~~~~~~~~~~~~~n~~gv~~~~~~ 151 (452)
T TIGR01773 126 LWLFSLILTIVLTLTNLYSVKSYGEF 151 (452)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhHH
Confidence 44677788888999999999998764
No 14
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.64 E-value=1.9e-15 Score=111.67 Aligned_cols=102 Identities=18% Similarity=0.161 Sum_probs=82.3
Q ss_pred chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy931 2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA 81 (108)
Q Consensus 2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~ 81 (108)
++.+.+++.+++|+|+++++|++||.|.|+++.+||..||+.+|..+....+...+..+..+++|+.. ..|. ++..
T Consensus 51 i~~v~~l~~al~~aEl~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~-~~~~---~~~~ 126 (445)
T PRK11357 51 IGGLIVIPQMCVYAELSTAYPENGADYVYLKNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGF-LTPI---DPLL 126 (445)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCceeeHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCC---chHH
Confidence 35567899999999999999999999999999999999999999855433355677788888899875 3453 2234
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccc
Q psy931 82 VRLLAAVITCLLTAINCYNKYHLTCS 107 (108)
Q Consensus 82 ~~~i~~~~i~l~~~iN~~g~k~~~~i 107 (108)
...++..++.+++.+|++|+|..+|+
T Consensus 127 ~~~~~~~~~~~~~~ln~~gv~~~~~v 152 (445)
T PRK11357 127 GKFIAAGLIIAFMLLHLRSVEGGAAF 152 (445)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 45667777888999999999988774
No 15
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.64 E-value=1.3e-15 Score=115.65 Aligned_cols=105 Identities=19% Similarity=0.258 Sum_probs=84.4
Q ss_pred chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhC---CCC---
Q psy931 2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIW---PHC--- 75 (108)
Q Consensus 2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~---~~~--- 75 (108)
++++.+++.+++|+|+++++|++||.|.|+++.+||..||+.||.+++.+ ....+.++.++++|+...+. ++.
T Consensus 70 iagv~~l~~al~yaElas~~P~sGg~Y~y~~~~~G~~~gfi~GW~~~l~~-~~~~a~va~~~s~yl~~ll~~~~~~~~~~ 148 (557)
T TIGR00906 70 ISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVTVGELWAFITGWNLILEY-VIGTAAVARSWSAYFDELLNKQIGQFRRT 148 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcceeeHHHHhCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 46778999999999999999999999999999999999999999999876 66778888888888875331 100
Q ss_pred ----CCCh--HHHHHHHHHHHHHHHHHHHhcccccccc
Q psy931 76 ----DPPY--SAVRLLAAVITCLLTAINCYNKYHLTCS 107 (108)
Q Consensus 76 ----~~~~--~~~~~i~~~~i~l~~~iN~~g~k~~~~i 107 (108)
..+. ....+++++++++.+.+|.+|+|.++|+
T Consensus 149 ~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gik~s~~v 186 (557)
T TIGR00906 149 YFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVKESAWV 186 (557)
T ss_pred cccccCCcccccchHHHHHHHHHHHHHHHhchhHHHHH
Confidence 0011 1235667788888999999999999874
No 16
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.64 E-value=2e-15 Score=112.40 Aligned_cols=98 Identities=14% Similarity=0.234 Sum_probs=76.3
Q ss_pred chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy931 2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA 81 (108)
Q Consensus 2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~ 81 (108)
+..+.+++++++++||++++|++||.|.|+++.+||..||+.||.+|+.+ ....+......+.++.. ++|+ .+
T Consensus 56 i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~~~g~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~~~~-~~p~--~~--- 128 (471)
T PRK11387 56 IGALVVYLVMQCLGELSVAMPETGAFHVYAARYLGPATGYTVAWLYWLTW-TVALGSSLTAAGFCMQY-WFPQ--VP--- 128 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh-ccCc--Cc---
Confidence 45678999999999999999999999999999999999999999999876 44555555556555543 3453 22
Q ss_pred HHHHHHHHHHHHHHHHHhccccccc
Q psy931 82 VRLLAAVITCLLTAINCYNKYHLTC 106 (108)
Q Consensus 82 ~~~i~~~~i~l~~~iN~~g~k~~~~ 106 (108)
......+++++++.+|++|+|..+|
T Consensus 129 ~~~~~~~~~~~~~~in~~gvk~~~~ 153 (471)
T PRK11387 129 VWPWCLLFCALIFGLNVVSTRFFAE 153 (471)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 2233445567788999999998875
No 17
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.63 E-value=2.4e-15 Score=111.68 Aligned_cols=99 Identities=18% Similarity=0.174 Sum_probs=82.0
Q ss_pred chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy931 2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA 81 (108)
Q Consensus 2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~ 81 (108)
+..+.+++++++++|+++++|++||.|+|+++.+||..||+.||.+++.+ ....+.+..++++|+.. ++|+ .+
T Consensus 53 i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~~~g~~~gf~~Gw~~~~~~-~~~~~~~~~~~~~~~~~-~~p~--~~--- 125 (456)
T PRK10238 53 IAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGSFAGFASGWNYWVLY-VLVAMAELTAVGKYIQF-WYPE--IP--- 125 (456)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hcCc--Cc---
Confidence 45678899999999999999999999999999999999999999999987 55667777788888875 4453 23
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccc
Q psy931 82 VRLLAAVITCLLTAINCYNKYHLTCS 107 (108)
Q Consensus 82 ~~~i~~~~i~l~~~iN~~g~k~~~~i 107 (108)
......+++++++.+|++|+|..+|+
T Consensus 126 ~~~~~~i~~~~~~~lN~~gv~~~~~~ 151 (456)
T PRK10238 126 TWVSAAVFFVVINAINLTNVKVFGEM 151 (456)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 23445566788999999999988764
No 18
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.63 E-value=3.5e-15 Score=111.05 Aligned_cols=104 Identities=18% Similarity=0.212 Sum_probs=79.9
Q ss_pred chHHHHHHhhHHHHhcccccccC-CcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCC-Ch
Q psy931 2 LTLREAYYRMFPPESLGTMIPKS-GGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDP-PY 79 (108)
Q Consensus 2 ~~~~~al~~a~~~ael~s~~P~~-GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~-~~ 79 (108)
++++.+++++++++||++++|++ ||.|+|+++.|||..||+.||.+|+.+.. .....+....+++.. ++|.... ++
T Consensus 43 i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~~~gf~~gw~~w~~~~~-~~~~~~~~~~~~~~~-~~p~~~~~~~ 120 (468)
T TIGR03810 43 ITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGPFMGFISAWGYWLSAWL-GNVAYATLLFSTLGY-FFPIFGGGNN 120 (468)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-hcccccCCCc
Confidence 46778899999999999999997 59999999999999999999999987533 344445455566654 4564422 22
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccc
Q psy931 80 SAVRLLAAVITCLLTAINCYNKYHLTCS 107 (108)
Q Consensus 80 ~~~~~i~~~~i~l~~~iN~~g~k~~~~i 107 (108)
.+....+..++++++.+|++|+|..+|+
T Consensus 121 ~~~~~~~~~~~~~~~~ln~~Gv~~~~~i 148 (468)
T TIGR03810 121 PPSIIGASVLLWCVHFLVLRGVEGAAFI 148 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 3445667777888999999999988763
No 19
>PRK10746 putative transport protein YifK; Provisional
Probab=99.63 E-value=3.6e-15 Score=110.99 Aligned_cols=99 Identities=13% Similarity=0.149 Sum_probs=80.9
Q ss_pred chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy931 2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA 81 (108)
Q Consensus 2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~ 81 (108)
+.++.+++++++++||++++|++||.|+|++|.+||..||..||.+|+.| ....+.+..+.++|+.. ++|+. +
T Consensus 51 i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~~~g~~~Gf~~gw~~~~~~-~~~~~~~~~a~~~~l~~-~~p~~--~--- 123 (461)
T PRK10746 51 IAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYMSPFFGYLTAWSYWFMW-MAVGISEITAIGVYVQF-WFPEM--A--- 123 (461)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-ccCCC--c---
Confidence 35677899999999999999999999999999999999999999999986 44556667788888875 45642 2
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccc
Q psy931 82 VRLLAAVITCLLTAINCYNKYHLTCS 107 (108)
Q Consensus 82 ~~~i~~~~i~l~~~iN~~g~k~~~~i 107 (108)
......+++++++.+|++|+|..+++
T Consensus 124 ~~~~~~~~~~~~~~lN~~gv~~~~~~ 149 (461)
T PRK10746 124 QWIPALIAVALVALANLAAVRLYGEI 149 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 23445566788888999999998764
No 20
>PRK15049 L-asparagine permease; Provisional
Probab=99.62 E-value=4.3e-15 Score=111.57 Aligned_cols=101 Identities=14% Similarity=0.133 Sum_probs=78.1
Q ss_pred chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy931 2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA 81 (108)
Q Consensus 2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~ 81 (108)
+..+.+++++.+++||++++|++||.|+|+++.+||..||+.||.+|+.| ....+....+.+.|... + +.... .+
T Consensus 69 i~~i~~~~v~~slaELas~~P~aGg~y~y~~~~~G~~~gf~~GW~~~l~~-~~~~~~~~~a~~~~~~~-~-~~~~~--~~ 143 (499)
T PRK15049 69 ICGLFSFFILRALGELVLHRPSSGSFVSYAREFLGEKAAYVAGWMYFINW-AMTGIVDITAVALYMHY-W-GAFGG--VP 143 (499)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-h-ccCCC--Cc
Confidence 45778999999999999999999999999999999999999999999876 33344444455666543 2 32221 12
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccc
Q psy931 82 VRLLAAVITCLLTAINCYNKYHLTCS 107 (108)
Q Consensus 82 ~~~i~~~~i~l~~~iN~~g~k~~~~i 107 (108)
.+..+.+++++++.+|++|+|..+|+
T Consensus 144 ~~~~~~~~~~l~~~iN~~gvk~~~~i 169 (499)
T PRK15049 144 QWVFALAALTIVGTMNMIGVKWFAEM 169 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557778889999999999998874
No 21
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.61 E-value=3.8e-15 Score=111.07 Aligned_cols=105 Identities=22% Similarity=0.248 Sum_probs=83.1
Q ss_pred chHHHHHHhhHHHHhcccccccCCcchhhhHHHhC----chhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhh---CCC
Q psy931 2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFG----PLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPI---WPH 74 (108)
Q Consensus 2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g----~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~---~~~ 74 (108)
+..+..++++++++||++++|++||.|+|+++.+| |..+|+.||.+++.+ ....+..+...++++...+ .|+
T Consensus 55 i~gi~~l~~~~~~aEl~s~~P~~Gg~y~~~~~~~g~~~g~~~~f~~gW~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~ 133 (482)
T TIGR00907 55 IAGAGSICIALSLAELSSAYPTSGGQYFWSAKLAPPRQMPFASWMTGWFNLAGQ-VAGTASTDLSVAQLILGIVSLTTPG 133 (482)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHhcccccccceeHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46778899999999999999999999999999876 577999999998875 5566777777888876532 122
Q ss_pred --CCCChHHHHHHHHHHHHHHHHHHHhcccccccc
Q psy931 75 --CDPPYSAVRLLAAVITCLLTAINCYNKYHLTCS 107 (108)
Q Consensus 75 --~~~~~~~~~~i~~~~i~l~~~iN~~g~k~~~~i 107 (108)
+.++++....+.++++++++.+|++|+|..+|+
T Consensus 134 ~~~~~~~~~~~~i~~~~~~~~~~in~~g~k~~~~~ 168 (482)
T TIGR00907 134 REYIPTRWHIFGIMIGIHLIHALINSLPTKWLPRI 168 (482)
T ss_pred CCccccCchhhhhHHHHHHHHHHHHHhhHhHHHHH
Confidence 223345556777788899999999999987664
No 22
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.60 E-value=1e-14 Score=108.22 Aligned_cols=99 Identities=18% Similarity=0.260 Sum_probs=79.5
Q ss_pred chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy931 2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA 81 (108)
Q Consensus 2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~ 81 (108)
+..+.+++++++++|+++++|++||.|.|+++.+||..||+.||.+++.+ ....+....+++.|... ++|+. +
T Consensus 50 i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~--~--- 122 (457)
T PRK10580 50 IGGVAAYIIMRALGEMSVHNPAASSFSRYAQENLGPLAGYITGWTYCFEI-LIVAIADVTAFGIYMGV-WFPTV--P--- 122 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hCCCC--C---
Confidence 45678899999999999999999999999999999999999999998875 44556666778888765 44532 2
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccc
Q psy931 82 VRLLAAVITCLLTAINCYNKYHLTCS 107 (108)
Q Consensus 82 ~~~i~~~~i~l~~~iN~~g~k~~~~i 107 (108)
.....+.++++.+.+|++|+|..+|+
T Consensus 123 ~~~~~~~~~~l~~~ln~~gv~~~~~~ 148 (457)
T PRK10580 123 HWIWVLSVVLIICAVNLMSVKVFGEL 148 (457)
T ss_pred hHHHHHHHHHHHHHHHHccchhHHHH
Confidence 22335566778899999999988763
No 23
>PRK10836 lysine transporter; Provisional
Probab=99.58 E-value=2.4e-14 Score=107.11 Aligned_cols=99 Identities=19% Similarity=0.192 Sum_probs=74.7
Q ss_pred chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy931 2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA 81 (108)
Q Consensus 2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~ 81 (108)
+.++.+++++++|+||++++|++||.|.|+++.+||..||+.||.+++.+ ....+. ....+++..+.++|+. +
T Consensus 57 i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~~~~g~~~gf~~Gw~~~~~~-~~~~a~-~~~a~~~~~~~~~~~~--~--- 129 (489)
T PRK10836 57 LIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFGFALGWNYWYNW-AVTIAV-DLVAAQLVMSWWFPDT--P--- 129 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHcChHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHhhhcCCCC--c---
Confidence 46788999999999999999999999999999999999999999999865 444443 3333444333344532 2
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccc
Q psy931 82 VRLLAAVITCLLTAINCYNKYHLTCS 107 (108)
Q Consensus 82 ~~~i~~~~i~l~~~iN~~g~k~~~~i 107 (108)
....+.+++.+++.+|++|+|..+++
T Consensus 130 ~~~~~~~~~~~~~~lN~~gv~~~~~~ 155 (489)
T PRK10836 130 GWIWSALFLGVIFLLNYISVRGFGEA 155 (489)
T ss_pred hHHHHHHHHHHHHHHHHHcchhhhhh
Confidence 22345566677889999999987763
No 24
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.57 E-value=1.3e-14 Score=115.65 Aligned_cols=104 Identities=18% Similarity=0.202 Sum_probs=88.2
Q ss_pred chHHHHHHhhHHHHhcccc-cccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCC-----
Q psy931 2 LTLREAYYRMFPPESLGTM-IPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHC----- 75 (108)
Q Consensus 2 ~~~~~al~~a~~~ael~s~-~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~----- 75 (108)
++.+++++.++||+|+++. +|++||.|.|++|.+||..||..||..++.. ....+..+.++++|+...+ +..
T Consensus 119 la~~vtlltaLS~seiaTng~p~aGG~Y~yisralGp~~Gf~iG~~~~la~-~va~A~~~~Gf~eyl~~lf-~~~~~~~~ 196 (953)
T TIGR00930 119 LCCCVTTITGLSMSAIATNGVVKGGGAYYLISRSLGPEFGGSIGLIFAFAN-AVAVAMYVVGFAETVLDLL-RENGSKIM 196 (953)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh-hhcccccc
Confidence 5678899999999999998 9999999999999999999999999998875 6788999999999998753 321
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHhcccccccc
Q psy931 76 DPPYSAVRLLAAVITCLLTAINCYNKYHLTCS 107 (108)
Q Consensus 76 ~~~~~~~~~i~~~~i~l~~~iN~~g~k~~~~i 107 (108)
..+.....+++.+++++++++|++|+|..+|+
T Consensus 197 ~~~~~~~~iia~i~l~ll~~In~~Gvk~~ak~ 228 (953)
T TIGR00930 197 VDPINDIRIYGTVTVVVLLGISFAGMEWENKA 228 (953)
T ss_pred cCccccchHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 11222356788899999999999999998874
No 25
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=99.56 E-value=2.4e-14 Score=107.76 Aligned_cols=99 Identities=16% Similarity=0.138 Sum_probs=72.7
Q ss_pred HHHhhHHHHhcccccc-cCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHH--HHHHHHHHHHhhhCCCCCCChHHHH
Q psy931 7 AYYRMFPPESLGTMIP-KSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAV--TALTFAQYILQPIWPHCDPPYSAVR 83 (108)
Q Consensus 7 al~~a~~~ael~s~~P-~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~--~a~~~~~y~~~~~~~~~~~~~~~~~ 83 (108)
.++.+++++||++++| ++||.|+|+++.+||++||+.+|.+|+.+.....+. ...+...|... +|+.+.+++...
T Consensus 47 ~lp~al~~AELas~~p~~~GG~y~wv~~a~G~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~--~~~~~~~~~~~~ 124 (507)
T TIGR00910 47 FIPVALCAAEMATVDGWEEGGIFAWVSNTLGERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILK--FPALNEDPIIKF 124 (507)
T ss_pred HHHHHHHHHHHHcccCCCCCCeeeehhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhccCcHHHH
Confidence 4668999999999997 999999999999999999999998887542211221 12233345442 244433445555
Q ss_pred HHHHHHHHHHHHHHHhcccccccc
Q psy931 84 LLAAVITCLLTAINCYNKYHLTCS 107 (108)
Q Consensus 84 ~i~~~~i~l~~~iN~~g~k~~~~i 107 (108)
+..++++++++++|++|+|..+|+
T Consensus 125 i~~l~i~~~~t~~n~~G~k~~~~i 148 (507)
T TIGR00910 125 IAALIIFWALAFSQFGGTKRTAKI 148 (507)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHH
Confidence 666778889999999999998874
No 26
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=99.56 E-value=3.1e-14 Score=106.08 Aligned_cols=100 Identities=19% Similarity=0.153 Sum_probs=68.4
Q ss_pred HHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHhh--hCCCCCCChHH
Q psy931 7 AYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMP---TGNAVTALTFAQYILQP--IWPHCDPPYSA 81 (108)
Q Consensus 7 al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~---~~~a~~a~~~~~y~~~~--~~~~~~~~~~~ 81 (108)
.++.+++++||++++|++||.|.|+++.+||++||+.+|.+|..+.. ...+..+..+ .|.... ..+....+.+.
T Consensus 44 ~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~~gf~~gw~~w~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 122 (474)
T TIGR03813 44 LVPVSLVAAELATAWPEKGGVFRWVGEAFGARWGFLAIFMLWAQVTIWFPTVLTFGAVSL-AFIGPEATVDESLAGNKLY 122 (474)
T ss_pred HHHHHHHHHHHHccCCCCCCceeeHhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCccccCcccccccHH
Confidence 35799999999999999999999999999999999999999886422 1111111111 122110 01122122344
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccc
Q psy931 82 VRLLAAVITCLLTAINCYNKYHLTCS 107 (108)
Q Consensus 82 ~~~i~~~~i~l~~~iN~~g~k~~~~i 107 (108)
...+.++++++.+.+|++|+|..+|+
T Consensus 123 ~~~~~l~~~~~~~~in~~gv~~~~~i 148 (474)
T TIGR03813 123 VLVSVLFVYWLATFIALRGVAAFTKV 148 (474)
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 44566677778899999999988764
No 27
>TIGR00909 2A0306 amino acid transporter.
Probab=99.56 E-value=2.6e-14 Score=105.00 Aligned_cols=104 Identities=26% Similarity=0.343 Sum_probs=83.3
Q ss_pred chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCC--CCCCh
Q psy931 2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPH--CDPPY 79 (108)
Q Consensus 2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~--~~~~~ 79 (108)
++.+.+++.+++++|+++++|++||.|.|+++.+||..||+.+|.+++.+ ....+..+..+++|+...+ +. .+.|.
T Consensus 44 i~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~~g~~~gw~~~~~~-~~~~a~~~~~~~~~~~~~~-~~~~~~~~~ 121 (429)
T TIGR00909 44 LAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMGELTAFIIGWSLWLEY-GVAVAAVAVGWGGYLQEFL-PGVGLDLPA 121 (429)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHccccCch
Confidence 35667788999999999999999999999999999999999999999876 6678888888899987643 42 11121
Q ss_pred HH---------HHHHHHHHHHHHHHHHHhcccccccc
Q psy931 80 SA---------VRLLAAVITCLLTAINCYNKYHLTCS 107 (108)
Q Consensus 80 ~~---------~~~i~~~~i~l~~~iN~~g~k~~~~i 107 (108)
+. ....++.++++++.+|++|+|..+|+
T Consensus 122 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~~ 158 (429)
T TIGR00909 122 VLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGKV 158 (429)
T ss_pred hhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 11 11346778899999999999998875
No 28
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.53 E-value=9.5e-14 Score=103.43 Aligned_cols=99 Identities=13% Similarity=0.064 Sum_probs=76.4
Q ss_pred chHHHHHHhhHHHHhcccccccCC-cchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChH
Q psy931 2 LTLREAYYRMFPPESLGTMIPKSG-GDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYS 80 (108)
Q Consensus 2 ~~~~~al~~a~~~ael~s~~P~~G-G~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~ 80 (108)
+.++.+++++++++||++++|++| |.|.|+++.+||..||++||.+++.+ ....+......++++.. +.|+. +.
T Consensus 44 i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~--~~- 118 (478)
T TIGR00913 44 IMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVDPAFGFAVGWNYWLQW-LIVLPLELVTASMTIQY-WTDKV--NP- 118 (478)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-cCCCC--CH-
Confidence 356778999999999999999655 56679999999999999999999986 55677778888888764 33422 21
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccc
Q psy931 81 AVRLLAAVITCLLTAINCYNKYHLTCS 107 (108)
Q Consensus 81 ~~~~i~~~~i~l~~~iN~~g~k~~~~i 107 (108)
.....+++++.+++|++|+|..+|+
T Consensus 119 --~~~~~~~~~~~~~in~~gv~~~~~~ 143 (478)
T TIGR00913 119 --AVWIAIFYVFIVIINLFGVKGYGEA 143 (478)
T ss_pred --HHHHHHHHHHHHHHHHhcchHHHHH
Confidence 1222345567889999999998764
No 29
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.53 E-value=7.7e-14 Score=102.75 Aligned_cols=103 Identities=25% Similarity=0.335 Sum_probs=86.0
Q ss_pred hHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCC---CCCCh
Q psy931 3 TLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPH---CDPPY 79 (108)
Q Consensus 3 ~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~---~~~~~ 79 (108)
..+...+.+++++|+++.+|++||.|.|+++.+||+.+|..+|.+++.+ ....+..+...++++.. ++|. ...+.
T Consensus 54 ~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 131 (466)
T COG0531 54 AGIIILFLALSYAELSSAIPSAGGAYAYAKRALGPRLGFLAGWLYLLAY-VIALAAIAIGAASYLSY-LFPGPGLLSIGP 131 (466)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCeeeehhhhcCcchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hcCcchhhcCCc
Confidence 4566677799999999999999999999999999999999999999976 66777888888887775 4453 22222
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccc
Q psy931 80 SAVRLLAAVITCLLTAINCYNKYHLTCS 107 (108)
Q Consensus 80 ~~~~~i~~~~i~l~~~iN~~g~k~~~~i 107 (108)
+...+++.+++++.+.+|++|+|..+|+
T Consensus 132 ~~~~~~~~~~~~~~~~ln~~G~~~~~~~ 159 (466)
T COG0531 132 LLIILIALALIALLTLLNLRGIKASAKI 159 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 5678889999999999999999998774
No 30
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.48 E-value=3.7e-13 Score=100.95 Aligned_cols=103 Identities=16% Similarity=0.177 Sum_probs=66.1
Q ss_pred HHHHHhhHHHHhccccccc-CCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHH---HHHHHHHHhhh-CCC---CC
Q psy931 5 REAYYRMFPPESLGTMIPK-SGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTA---LTFAQYILQPI-WPH---CD 76 (108)
Q Consensus 5 ~~al~~a~~~ael~s~~P~-~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a---~~~~~y~~~~~-~~~---~~ 76 (108)
...++.+++++||++++|+ +||.|+|+++.+||++||+.+|.++..+........+ ......+.... .+. .+
T Consensus 49 ~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (496)
T PRK15238 49 LFFIPFALMMAEYGSAFKDEKGGIYSWMNKSVGPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTTQTWHFLG 128 (496)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhhhhc
Confidence 3357799999999999997 8999999999999999999999877654221111111 11111111100 000 00
Q ss_pred -CChHHHHHHHHHHHHHHHHHHHhcccccccc
Q psy931 77 -PPYSAVRLLAAVITCLLTAINCYNKYHLTCS 107 (108)
Q Consensus 77 -~~~~~~~~i~~~~i~l~~~iN~~g~k~~~~i 107 (108)
.++.....+++..+++++.+|.+|+|.++|+
T Consensus 129 ~~~~~~~~~~a~~~~~~~t~vn~~g~~~~~~i 160 (496)
T PRK15238 129 LNSTQVVGILAVIWMILVTFVASKGINKIAKV 160 (496)
T ss_pred ccchHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 1112233556666678999999999998874
No 31
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.48 E-value=4.5e-13 Score=99.89 Aligned_cols=99 Identities=11% Similarity=0.121 Sum_probs=79.4
Q ss_pred chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy931 2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA 81 (108)
Q Consensus 2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~ 81 (108)
+..+..++++.+++|+++..|+.|+.|.|+++.+||..||+.||.+++.+ ....+.++.+++.|+.. ++|+. +
T Consensus 61 i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~~~g~~~gf~~gW~~~~~~-~~~~~a~~~a~~~~~~~-~~p~~--~--- 133 (469)
T PRK11049 61 IIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLLGPWAGYFTGWTYWFCW-VVTGIADVVAITAYAQF-WFPDL--S--- 133 (469)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hcCCC--c---
Confidence 34567789999999999999999999999999999999999999999876 33445566777888875 45643 2
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccc
Q psy931 82 VRLLAAVITCLLTAINCYNKYHLTCS 107 (108)
Q Consensus 82 ~~~i~~~~i~l~~~iN~~g~k~~~~i 107 (108)
....+.+++++++.+|++|+|..+|+
T Consensus 134 ~~~~~~~~~~~~~~iN~~g~~~~~~i 159 (469)
T PRK11049 134 DWVASLAVVLLLLSLNLATVKMFGEM 159 (469)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 23445567788899999999998774
No 32
>KOG1289|consensus
Probab=99.39 E-value=9.4e-13 Score=98.60 Aligned_cols=105 Identities=20% Similarity=0.276 Sum_probs=90.4
Q ss_pred chHHHHHHhhHHHHhcccccccCCcchhhhHH----HhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhh---CCC
Q psy931 2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINE----AFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPI---WPH 74 (108)
Q Consensus 2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~----~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~---~~~ 74 (108)
++.+..+|++++.+|++|.+|++||.|.|+.. .++|..+|++||.+.+++ ....++...+.++.+.... .|+
T Consensus 91 Ia~~~~i~va~slaEl~Sa~PtsGgLy~waa~lap~k~~~~~sw~~Gw~~~~g~-~~~~aSi~~S~A~~i~~~v~l~np~ 169 (550)
T KOG1289|consen 91 IAGFFSICVALSLAELCSAMPTSGGLYFWAAVLAPPKYGPFASWVTGWLNYLGQ-ATGVASITYSLAQLILGAVSLTNPN 169 (550)
T ss_pred HHHHHHHHHHhHHHHHHhhCCCCCcHHHHHHHhcCcchhhHHHHHHHHHHHHHH-HhhchhhhHHHHHHHHHHHhhcCCC
Confidence 56788899999999999999999999999985 788899999999998876 6788888999998887642 366
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHhcccccccc
Q psy931 75 CDPPYSAVRLLAAVITCLLTAINCYNKYHLTCS 107 (108)
Q Consensus 75 ~~~~~~~~~~i~~~~i~l~~~iN~~g~k~~~~i 107 (108)
+.+++++...+...+..+..++|....|..+|+
T Consensus 170 y~~~~~~~~~v~~ai~~v~~lln~~p~r~l~~I 202 (550)
T KOG1289|consen 170 YEPTNYHQFGVFEAILFVHGLLNSLPTRVLARI 202 (550)
T ss_pred CcccceEeehHHHHHHHHHHHHhcCCcHHHHHH
Confidence 666677888899999999999999999887764
No 33
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.37 E-value=5.2e-12 Score=93.13 Aligned_cols=98 Identities=18% Similarity=0.197 Sum_probs=87.5
Q ss_pred chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy931 2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA 81 (108)
Q Consensus 2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~ 81 (108)
++++.+.++..+..|+...-|++|+..+|+++.+||++||+.||.||+.| .....++..+.+.|++. ++|+. +
T Consensus 54 I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~~lG~~Agf~tgW~YW~~w-v~v~~ae~tAi~~y~~~-WfP~v-----P 126 (462)
T COG1113 54 IAGIFVFLIMRALGEMLVANPVSGSFSDYARKYLGPWAGFLTGWTYWFFW-VLVGIAELTAIGIYLQF-WFPDV-----P 126 (462)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hcCCC-----c
Confidence 67888999999999999999999999999999999999999999999998 56777888999999997 56864 3
Q ss_pred HHHHHHHHHHHHHHHHHhccccccc
Q psy931 82 VRLLAAVITCLLTAINCYNKYHLTC 106 (108)
Q Consensus 82 ~~~i~~~~i~l~~~iN~~g~k~~~~ 106 (108)
.++.+...+.+...+|+.++|..+.
T Consensus 127 ~Wv~al~~~~l~~~~NL~sVk~FGE 151 (462)
T COG1113 127 QWVFALAAVVLLLAVNLISVKVFGE 151 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888899999999999998764
No 34
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.33 E-value=8.4e-13 Score=98.42 Aligned_cols=104 Identities=17% Similarity=0.236 Sum_probs=80.9
Q ss_pred chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhh--CCCCCCCh
Q psy931 2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPI--WPHCDPPY 79 (108)
Q Consensus 2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~--~~~~~~~~ 79 (108)
++.+.+++.+.+++|+++++|++||.|.|++|.+||..||..||.+++.+ ....+.+....+.++.. + +++...+.
T Consensus 37 i~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw~y~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 114 (478)
T PF00324_consen 37 IAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGWAYWLSY-IAAIAAEATAAGSFLQF-WGYFPGLPSTW 114 (478)
T ss_pred HHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeHHHHHHH-HHHHHhhhhhhhhhhcc-ccccccccccc
Confidence 56788999999999999999999999999999999999999999999876 55666666666655553 3 23321111
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccc
Q psy931 80 SAVRLLAAVITCLLTAINCYNKYHLTCS 107 (108)
Q Consensus 80 ~~~~~i~~~~i~l~~~iN~~g~k~~~~i 107 (108)
.+..+++.+.+++.+.+|++|+|..+|+
T Consensus 115 ~~~~~~~~i~~~~~~~l~~~gv~~~~~~ 142 (478)
T PF00324_consen 115 VWGILIAIIFILLITLLNLFGVRVSGKI 142 (478)
T ss_pred cccchhhhhhhhhhhhhhhhhhhccchH
Confidence 1112457778889999999999999873
No 35
>PHA02764 hypothetical protein; Provisional
Probab=99.29 E-value=3.2e-12 Score=90.77 Aligned_cols=57 Identities=21% Similarity=0.223 Sum_probs=50.8
Q ss_pred chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHH
Q psy931 2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVT 59 (108)
Q Consensus 2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~ 59 (108)
++++.+++.++||+|+++++|++||.|.|.+|.+||..|++.||..|..+ +.+.++.
T Consensus 54 LGGLlALPgAL~YAELGSAmPrAGGdYVYISRAFGP~~GFLvG~a~WLtl-~~G~Pal 110 (399)
T PHA02764 54 IGAVFEIPLLLMYYKLTTKFPLNGGDYAYIRTAFSSKFYTIFGISLWLTY-VLSQPIL 110 (399)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCceEEEhHHhhCccHHHHHHHHHHHHH-Hhhcchh
Confidence 56788999999999999999999999999999999999999999998875 5555554
No 36
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.27 E-value=2.3e-11 Score=88.37 Aligned_cols=103 Identities=8% Similarity=-0.100 Sum_probs=77.6
Q ss_pred hHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHHH
Q psy931 3 TLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAV 82 (108)
Q Consensus 3 ~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~ 82 (108)
....+++.+++++|+++++|++||.|+|+++.+||..+++.+|.+++.. .....+.....++++... ++....++.+.
T Consensus 37 ~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~~~~~-~~~~~ay~~~~~~~l~~~-~~~~~~~~~~~ 114 (381)
T TIGR00837 37 LWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSLLFVL-YILTYAYISGGGSILSRL-IGEYFGFPWSA 114 (381)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHHHHHH-HHHHHHHHHccHHHHHHH-HHHhcCCCccH
Confidence 4567889999999999999999999999999999999999999988754 334555555666676653 23211111234
Q ss_pred HHHHHHHHHHHHHHHHhcccccccc
Q psy931 83 RLLAAVITCLLTAINCYNKYHLTCS 107 (108)
Q Consensus 83 ~~i~~~~i~l~~~iN~~g~k~~~~i 107 (108)
....+.+.+++..+|.+|+|..+|+
T Consensus 115 ~~~~~~~~~v~~~l~~~G~~~~~~v 139 (381)
T TIGR00837 115 RAIVLIFTVLFGSFVWLSTSAVDRI 139 (381)
T ss_pred HHHHHHHHHHHHHHHHhchhHHHHH
Confidence 5566677778889999999988764
No 37
>KOG1286|consensus
Probab=99.23 E-value=5.5e-11 Score=90.42 Aligned_cols=68 Identities=21% Similarity=0.226 Sum_probs=62.7
Q ss_pred chHHHHHHhhHHHHhccccccc-CCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy931 2 LTLREAYYRMFPPESLGTMIPK-SGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQP 70 (108)
Q Consensus 2 ~~~~~al~~a~~~ael~s~~P~-~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~ 70 (108)
+.+..+++.+.||+|++.++|+ +||.|.|+++.+||.+||..||.+++.| ....+.++.+.+.|+..+
T Consensus 72 i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~i~e~~aF~~gWny~l~y-~i~~a~e~~a~s~~~~~w 140 (554)
T KOG1286|consen 72 IAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRFVGESLAFAIGWNYLLEY-VIGLAAEARAWSSYLDYW 140 (554)
T ss_pred HHHHHHHHHHHHHHHHheecccccccceeeeeeeeCcHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHH
Confidence 3467899999999999999999 5999999999999999999999999987 678999999999999874
No 38
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.22 E-value=1.5e-10 Score=86.94 Aligned_cols=98 Identities=16% Similarity=0.198 Sum_probs=80.9
Q ss_pred chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy931 2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA 81 (108)
Q Consensus 2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~ 81 (108)
+.+...++++.+..||++.+|.+|+..+|+.|-.+|-.||..||.||+.| ....+.+-.+.+..++. ++|+. .|
T Consensus 86 i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfvdpa~GFa~gWnYw~~w-~v~~~~El~aa~~vi~y-W~p~~-v~--- 159 (541)
T COG0833 86 IIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFVDPAFGFALGWNYWLNW-AVTLPLELTAASLVIQY-WFPDT-VP--- 159 (541)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhcCchHHHHHHHHHHHHH-HHHhhHHHHHHHHhhhh-hcCCC-CC---
Confidence 45678899999999999999999999999999999999999999999998 66788877777766665 55643 22
Q ss_pred HHHHHHHHHHHHHHHHHhcccccc
Q psy931 82 VRLLAAVITCLLTAINCYNKYHLT 105 (108)
Q Consensus 82 ~~~i~~~~i~l~~~iN~~g~k~~~ 105 (108)
......++..+.+++|++++|..+
T Consensus 160 ~~~w~~iF~~~i~~iN~~~Vk~fG 183 (541)
T COG0833 160 PWIWIAIFLVLIFLLNLFGVKGFG 183 (541)
T ss_pred hHHHHHHHHHHHHHHHHhcccccc
Confidence 344455677888999999999876
No 39
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=98.90 E-value=1.9e-08 Score=72.60 Aligned_cols=99 Identities=12% Similarity=0.055 Sum_probs=77.0
Q ss_pred chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy931 2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA 81 (108)
Q Consensus 2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~ 81 (108)
++++.+++.+++++|+++++|+. +.++|.++.+||..|++.+|.+... .....+.....+++++.....|+ . +
T Consensus 42 l~~~~~~~~~~~~~~l~~~~p~~-~~~~~~~~~~Gk~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~--t---p 114 (359)
T TIGR00912 42 LGGLIIIFLLCLMIKIMSKFPEK-NFSEILSKYLGKILGRLLSILFILY-FFLIAAYLIRIFADFIKTYLLPR--T---P 114 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCC--C---C
Confidence 46777889999999999999987 6999999999999999999998764 35555566667777776533343 1 2
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccc
Q psy931 82 VRLLAAVITCLLTAINCYNKYHLTCS 107 (108)
Q Consensus 82 ~~~i~~~~i~l~~~iN~~g~k~~~~i 107 (108)
...+.+..++++...|..|.|..+|+
T Consensus 115 ~~~~~l~~l~~~~~~~~~Gi~~i~r~ 140 (359)
T TIGR00912 115 IIVIIILIIIVSIYIVRKGIEVLLRT 140 (359)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 45566777778888899999988774
No 40
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=98.01 E-value=7.9e-05 Score=54.84 Aligned_cols=84 Identities=13% Similarity=0.233 Sum_probs=58.3
Q ss_pred ccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHH----HHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHHHHHHHH
Q psy931 20 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTG----NAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTA 95 (108)
Q Consensus 20 ~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~----~a~~a~~~~~y~~~~~~~~~~~~~~~~~~i~~~~i~l~~~ 95 (108)
+.|++||.|++.++.+||+.|++.+|...+...|.. .+..+.-++ +. .++|+.. +.....+.+++...+...
T Consensus 49 av~~~gG~~~~l~~~~g~~f~~lf~~~~~l~iGP~~aiPRtaa~s~e~~--i~-p~~~~~~-~~~~l~i~siiff~i~~~ 124 (378)
T TIGR00796 49 ALALVGGGYDSLSARIGKVFGILFTVILYLTIGPLFAIPRTATVSFEMG--IA-PLLHSPT-SLLALFIFSLIFFAVVLL 124 (378)
T ss_pred eeeecCCCHHHHHHHhChHHHHHHHHHHHHHHHhchhhhHHHHHHHHHH--HH-hccCccc-chHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999876555654 455554444 32 2445321 122334455666667777
Q ss_pred HHHhcccccccc
Q psy931 96 INCYNKYHLTCS 107 (108)
Q Consensus 96 iN~~g~k~~~~i 107 (108)
+|+++.|...++
T Consensus 125 l~~~~~k~~~~i 136 (378)
T TIGR00796 125 LSLNPSKLIDRV 136 (378)
T ss_pred HHcCcccHHHHh
Confidence 999998887653
No 41
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=97.94 E-value=0.00012 Score=54.19 Aligned_cols=95 Identities=15% Similarity=0.072 Sum_probs=62.0
Q ss_pred hhHHHHhccccccc-CCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCC--CCCCChHHHHHHH
Q psy931 10 RMFPPESLGTMIPK-SGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWP--HCDPPYSAVRLLA 86 (108)
Q Consensus 10 ~a~~~ael~s~~P~-~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~--~~~~~~~~~~~i~ 86 (108)
.+..+.|.....|. ..+.++++++.+||..|.+.++.+++.. .....+++...++.+.+.+.. ..+.| ...+.+
T Consensus 50 ~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii~~lY~~~~-~~i~~aY~~~~~~~~~~fl~~~~~~~~p--~~~i~~ 126 (397)
T TIGR00814 50 GHRALARFLLSSKNPCEDITEVVEEHFGKNWGILITLLYFFAI-YPILLIYSVAITNDSASFLVNQLGTAPP--LRGLLS 126 (397)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCc--HHHHHH
Confidence 33344555444454 7899999999999999999999998764 334455554444444432211 11222 234566
Q ss_pred HHHHHHHHHHHHhcccccccc
Q psy931 87 AVITCLLTAINCYNKYHLTCS 107 (108)
Q Consensus 87 ~~~i~l~~~iN~~g~k~~~~i 107 (108)
..+++....++..|.|...|+
T Consensus 127 lilv~il~~iv~~G~~~i~r~ 147 (397)
T TIGR00814 127 LALILILVAIMSFGEKLLFKI 147 (397)
T ss_pred HHHHHHHHHHHHhcHHHHHHH
Confidence 677777788999999988774
No 42
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=97.11 E-value=0.0044 Score=45.88 Aligned_cols=101 Identities=9% Similarity=0.009 Sum_probs=66.8
Q ss_pred HHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHHHH
Q psy931 4 LREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVR 83 (108)
Q Consensus 4 ~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~ 83 (108)
-..++..++.++|.....|+..+.-.-+++.+||..+++.+..+.+..+. ...++....++.+.+.+ +.....+....
T Consensus 44 w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~~~~~~~~~~~~y~-ll~AYisg~g~~~~~~l-~~~~~~~~~~~ 121 (394)
T PF03222_consen 44 WPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGGIVIGISYLFLLYA-LLVAYISGGGSILSSLL-GNQLGTDLSPW 121 (394)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHHHHHHHHHHHHHHH-HHHHHHHccHHHHHHHH-HHhcCCCCcHH
Confidence 35667888999999999999999999999999999999998887765433 44455566666665533 32111112233
Q ss_pred HHHHHHHHHHHHHHHhccccccc
Q psy931 84 LLAAVITCLLTAINCYNKYHLTC 106 (108)
Q Consensus 84 ~i~~~~i~l~~~iN~~g~k~~~~ 106 (108)
.....+..++..+-+.|.|...|
T Consensus 122 ~~~~~f~~i~~~iv~~g~~~v~~ 144 (394)
T PF03222_consen 122 LSSLLFTIIFGGIVYFGTKAVDR 144 (394)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHH
Confidence 44444455555555667665544
No 43
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=97.05 E-value=0.014 Score=41.67 Aligned_cols=98 Identities=9% Similarity=0.007 Sum_probs=72.8
Q ss_pred chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy931 2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA 81 (108)
Q Consensus 2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~ 81 (108)
++...++...+.+..+.+++|+ -...++.++.+||..|.+.+..+.+. .....+.....+++.+.....|+. +
T Consensus 40 l~~~~~l~~~~l~~~l~~~~p~-~~l~~~~~~~~Gk~lg~ii~~~~~l~-~l~~~~~~lr~~~~~i~~~~lp~T-----P 112 (320)
T PF03845_consen 40 LGGLIGLLLALLIYYLLKRFPG-KTLVEISEKLFGKWLGKIINLLYILY-FLLISALVLREFSEFIKTYLLPET-----P 112 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHhCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCcC-----C
Confidence 4677888899999999999988 45679999999999999998776653 355666667777777776555542 2
Q ss_pred HHHHHHHHHHHHHHHHHhccccccc
Q psy931 82 VRLLAAVITCLLTAINCYNKYHLTC 106 (108)
Q Consensus 82 ~~~i~~~~i~l~~~iN~~g~k~~~~ 106 (108)
...+...+++........|.+..+|
T Consensus 113 ~~~i~~~~ll~~~y~a~~G~e~i~R 137 (320)
T PF03845_consen 113 IWVIILLFLLVAAYAARKGIEVIAR 137 (320)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 4555556666777777777777666
No 44
>KOG2083|consensus
Probab=96.52 E-value=0.0054 Score=47.49 Aligned_cols=102 Identities=20% Similarity=0.141 Sum_probs=80.4
Q ss_pred chHHHHHHhhHHHHhcccccc-cCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChH
Q psy931 2 LTLREAYYRMFPPESLGTMIP-KSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYS 80 (108)
Q Consensus 2 ~~~~~al~~a~~~ael~s~~P-~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~ 80 (108)
++..+++..+++-.-.+++-- +.||.|.-..|..||..|--.|-++.++. ...++....++++-+...+ ... +.+
T Consensus 71 ~~~~vt~it~lSa~~I~t~~~vk~Gg~yflis~slg~efggsigiIy~f~~-aVa~am~~vgfaEsv~~l~-~~~--s~~ 146 (643)
T KOG2083|consen 71 LTTVVTLITVLSAIAIVTRGQVKSGGVYFLISRSLGPEFGGSIGIIYAFAN-AVATAMYVVGFAESVAHLF-ETE--SKE 146 (643)
T ss_pred HHHHHHHHHHHhHheeeecceeccCcEEEEEEecccccccchhHHHHHHHH-HHHHHHhhhhHHHHHHHHH-Hhc--cHH
Confidence 456778888888888888776 57999999999999998888888888874 6678888899998888754 432 223
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccc
Q psy931 81 AVRLLAAVITCLLTAINCYNKYHLTCS 107 (108)
Q Consensus 81 ~~~~i~~~~i~l~~~iN~~g~k~~~~i 107 (108)
-.+.++.+..+++..+|..|+|+..|.
T Consensus 147 ~i~gi~~vt~~ill~i~~ag~~w~~k~ 173 (643)
T KOG2083|consen 147 MIDGIGSVTVLILLAINVAGVEWEAKL 173 (643)
T ss_pred HhcchhHHHHHHHHHhhhccchhHHHH
Confidence 345588888899999999999987763
No 45
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=96.45 E-value=0.026 Score=42.09 Aligned_cols=96 Identities=10% Similarity=0.073 Sum_probs=60.6
Q ss_pred HHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhh---CCCCCCChHHH
Q psy931 6 EAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPI---WPHCDPPYSAV 82 (108)
Q Consensus 6 ~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~---~~~~~~~~~~~ 82 (108)
.+...++.++|.....|+..+..+-+++.+||..+++....+.+..++ ...++....++.+.+.+ .+ .+.++
T Consensus 46 ~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i~~~~y~fl~y~-ll~AYisg~g~il~~~l~~~~~-~~i~~--- 120 (403)
T PRK15132 46 LMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWLTGFSMMFLMYA-LTAAYISGAGELLASSISDWTG-ISMSP--- 120 (403)
T ss_pred HHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHHHHHHHHHHHHHH-HHHHHHhCcHHHHHHHHHHhcc-CCCCh---
Confidence 466778889999889888888999999999999999998888775433 45555555344443322 22 22222
Q ss_pred HHHHHHHHHHHHHHHHhccccccc
Q psy931 83 RLLAAVITCLLTAINCYNKYHLTC 106 (108)
Q Consensus 83 ~~i~~~~i~l~~~iN~~g~k~~~~ 106 (108)
....+.+.++...+-+.|.|...|
T Consensus 121 ~~~~l~F~~~~~~iv~~g~~~v~~ 144 (403)
T PRK15132 121 TAGVLLFTLVAGGVVCVGTSSVDL 144 (403)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHH
Confidence 223333444444455556665544
No 46
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=96.35 E-value=0.057 Score=40.76 Aligned_cols=101 Identities=15% Similarity=0.096 Sum_probs=66.1
Q ss_pred HHHHHhhHHHHhccccc-ccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHHHH
Q psy931 5 REAYYRMFPPESLGTMI-PKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVR 83 (108)
Q Consensus 5 ~~al~~a~~~ael~s~~-P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~ 83 (108)
..+++.++.+.|..... |+..+.-+-+++.+||..+.+.+..+.+..++ .+.++...+.+.+.+.+......++.+..
T Consensus 61 p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~ilYff~ly~-ll~aY~~~itn~l~sfl~~ql~~~~~~r~ 139 (443)
T PRK13629 61 PIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYFFAICP-LLWIYGVTITNTFMTFWENQLGFAPLNRG 139 (443)
T ss_pred HHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCcCCccHH
Confidence 45566778889999988 65666778889999999999999888876544 34444555555554421000111111245
Q ss_pred HHHHHHHHHHHHHHHhccccccc
Q psy931 84 LLAAVITCLLTAINCYNKYHLTC 106 (108)
Q Consensus 84 ~i~~~~i~l~~~iN~~g~k~~~~ 106 (108)
+.+.+++.++..+-..|.|...|
T Consensus 140 l~slifv~~l~~iv~~G~~~v~k 162 (443)
T PRK13629 140 FVALFLLLLMAFVIWFGKDLMVK 162 (443)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHH
Confidence 66777777777777788776655
No 47
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=96.17 E-value=0.06 Score=40.20 Aligned_cols=103 Identities=7% Similarity=0.016 Sum_probs=69.2
Q ss_pred chHHHHHHhhHHHHhcccccccCC-cchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCC-CCCCh
Q psy931 2 LTLREAYYRMFPPESLGTMIPKSG-GDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPH-CDPPY 79 (108)
Q Consensus 2 ~~~~~al~~a~~~ael~s~~P~~G-G~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~-~~~~~ 79 (108)
++...+++..+.+.|.....|+.. +...=+++.+||.++++.+-.+.+.. .....++....++-+.+.+ +. ...++
T Consensus 48 i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~li~~s~~~~~-~~~~~aY~~~~g~~l~~~~-~~~~~~~~ 125 (415)
T COG0814 48 IAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLGKKGGILIGLSYFFAL-YGLLVAYIVGIGNLLASFL-GNQFGLNP 125 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHhCcchHHHHHHHHHHHH-HHHHHHHHhcchhHHHHHH-HhhcccCC
Confidence 355678889999999999999995 99999999999999999998777653 3345556666666666532 32 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccc
Q psy931 80 SAVRLLAAVITCLLTAINCYNKYHLTC 106 (108)
Q Consensus 80 ~~~~~i~~~~i~l~~~iN~~g~k~~~~ 106 (108)
....+..+++...+..+...|.+...|
T Consensus 126 ~~r~~~~lif~~~~~~l~~~~~~~~lk 152 (415)
T COG0814 126 LPRKLGSLIFALVLAFLSWLGTLAVLK 152 (415)
T ss_pred cchHHHHHHHHHHHHHHHHhchhHHHH
Confidence 234444455555555566666665443
No 48
>PRK10483 tryptophan permease; Provisional
Probab=95.76 E-value=0.12 Score=38.83 Aligned_cols=100 Identities=5% Similarity=-0.144 Sum_probs=63.3
Q ss_pred HHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHHHH
Q psy931 4 LREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVR 83 (108)
Q Consensus 4 ~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~ 83 (108)
-+.++..++...|....+|+.-+.-+-+|+..||....+.+..+.+..+. ...++....++.+.+.+ ++.+. +.+..
T Consensus 52 W~~M~~taLlllEv~l~~~~g~~~~tma~~~LG~~g~~i~~~s~lfl~Y~-Ll~AYisg~g~il~~~l-~~~~~-~i~~~ 128 (414)
T PRK10483 52 WFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKGWNVVNGISIAFVLYI-LTYAYISASGSILHHTF-AEMSL-NVPAR 128 (414)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHhCcHHHHHHHH-HhcCC-CCcHH
Confidence 35677888889999999999999999999999998665544444433222 34444445555555533 32111 11234
Q ss_pred HHHHHHHHHHHHHHHhccccccc
Q psy931 84 LLAAVITCLLTAINCYNKYHLTC 106 (108)
Q Consensus 84 ~i~~~~i~l~~~iN~~g~k~~~~ 106 (108)
..++.+..++..+-+.|.|...|
T Consensus 129 ~~~llF~~~~~~iv~~gt~~vd~ 151 (414)
T PRK10483 129 AAGFGFALLVAFVVWLSTKAVSR 151 (414)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHH
Confidence 45556666666777777776655
No 49
>PRK09664 tryptophan permease TnaB; Provisional
Probab=95.67 E-value=0.15 Score=38.24 Aligned_cols=99 Identities=7% Similarity=-0.026 Sum_probs=62.7
Q ss_pred hHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCC---CCCCh
Q psy931 3 TLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPH---CDPPY 79 (108)
Q Consensus 3 ~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~---~~~~~ 79 (108)
+-+.++..++...|....+|+.-+.-+-+|+..||....+.+..+.+..+ +...++-..-++.+.+.+ +. .+.+
T Consensus 49 ~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~~i~~~~~~fl~Y-~Ll~AYisggG~il~~~l-~~~~~~~i~- 125 (415)
T PRK09664 49 AWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNIISGITVAFVLY-ILTYAYISANGAIISETI-SMNLGYHAN- 125 (415)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHH-hhhccCCCc-
Confidence 34567788888999999999999999999999999755555444433322 234444445555555533 21 1222
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccc
Q psy931 80 SAVRLLAAVITCLLTAINCYNKYHLTC 106 (108)
Q Consensus 80 ~~~~~i~~~~i~l~~~iN~~g~k~~~~ 106 (108)
....++.+.+++..+-+.|.|...|
T Consensus 126 --~~~~~llF~~~~~~~v~~gt~~vd~ 150 (415)
T PRK09664 126 --PRIVGICTAIFVASVLWISSLAASR 150 (415)
T ss_pred --HHHHHHHHHHHHHHHHHhchhHHHH
Confidence 2334456666666666677766554
No 50
>KOG1288|consensus
Probab=91.43 E-value=0.34 Score=38.85 Aligned_cols=99 Identities=14% Similarity=0.087 Sum_probs=69.4
Q ss_pred HHHhhHHHHhcccccc-cCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCC---------CC
Q psy931 7 AYYRMFPPESLGTMIP-KSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPH---------CD 76 (108)
Q Consensus 7 al~~a~~~ael~s~~P-~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~---------~~ 76 (108)
-++..++.+.+++.=- +.||.|....|..||-.|--.|-+..++ ....++.....+.+-+..-+.++ .+
T Consensus 113 ~llTvlSicAIsTNGaV~GGGaYymISRsLGpEfGGSIGllFf~a-nV~~~am~isG~vE~il~nfG~~a~g~sg~~~lP 191 (945)
T KOG1288|consen 113 LLLTVLSICAISTNGAVRGGGAYYMISRSLGPEFGGSIGLLFFVA-NVFNCAMNISGFVEPILDNFGKEAQGASGSQFLP 191 (945)
T ss_pred HHHHHHHHhhhccCCceecCceEEEEEcccCcccCCeeeehhhHH-HHhcchhhhhhhhHHHHHhcCccccCCcccccCC
Confidence 3444555666665443 5689999999999998887777665555 46778888888887777633211 12
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhccccccc
Q psy931 77 PPYSAVRLLAAVITCLLTAINCYNKYHLTC 106 (108)
Q Consensus 77 ~~~~~~~~i~~~~i~l~~~iN~~g~k~~~~ 106 (108)
+.+|+..+-+..+..++..+.+.|....+|
T Consensus 192 ~g~ww~fly~t~vl~l~~~vc~lGsalfAk 221 (945)
T KOG1288|consen 192 DGYWWRFLYTTLVLALCLIVCLLGSALFAK 221 (945)
T ss_pred CCcchhhHHHHHHHHHHHHHHHhhHHHHHh
Confidence 335777777788888888888888877765
No 51
>KOG2082|consensus
Probab=88.95 E-value=0.57 Score=37.98 Aligned_cols=99 Identities=17% Similarity=0.181 Sum_probs=62.1
Q ss_pred HHhhHHHHhcccccc-cCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCC------CC---
Q psy931 8 YYRMFPPESLGTMIP-KSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHC------DP--- 77 (108)
Q Consensus 8 l~~a~~~ael~s~~P-~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~------~~--- 77 (108)
++.+.+.+-.++.=- .+||.|....|..||-.|-.+|-+..++. ....+.+.....+.+....+|.. +.
T Consensus 161 mLTaISmSAIATNGVVpaGGsYfmISRsLGPEFGgAVGlcFYLgt-T~AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a~~~ 239 (1075)
T KOG2082|consen 161 MLTAISMSAIATNGVVPAGGSYFMISRSLGPEFGGAVGLCFYLGT-TVAAAMYILGAVEIFLTYIFPAAAIFGAEDAHDE 239 (1075)
T ss_pred HHHHHHHHHHHhcCcccCCCeeEEEecccCccccceeeehhhhhh-HHHHHHHHHhHHHHHHHHHccHhhhcCccccccc
Confidence 344556666666433 58999999999999999988887655542 33334444444444443334421 00
Q ss_pred -C--hHHHHHHHHHHHHHHHHHHHhcccccccc
Q psy931 78 -P--YSAVRLLAAVITCLLTAINCYNKYHLTCS 107 (108)
Q Consensus 78 -~--~~~~~~i~~~~i~l~~~iN~~g~k~~~~i 107 (108)
. ..-.++-+.+++++.+++-+.|+|..-|+
T Consensus 240 ~~am~nnlRvYGT~~Li~m~lIVf~GVK~Vnk~ 272 (1075)
T KOG2082|consen 240 AAAMLNNLRVYGTVFLILMALIVFVGVKFVNKF 272 (1075)
T ss_pred hhhhhcceehHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 12245667788888888888999876553
No 52
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=86.38 E-value=10 Score=28.76 Aligned_cols=75 Identities=24% Similarity=0.274 Sum_probs=40.7
Q ss_pred CcchhhhHHHhC-chhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHHHHHHHHHHHhcccc
Q psy931 25 GGDYAYINEAFG-PLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCYNKYH 103 (108)
Q Consensus 25 GG~y~y~~~~~g-~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~i~~~~i~l~~~iN~~g~k~ 103 (108)
||+-.|.++..+ |+.|.+.+.. .+.+.......++.+.++.+.+.+ + .| ....++.+.++...+-.-|+|.
T Consensus 116 GGP~yyi~~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~-~---~~---~~v~~i~l~~l~~~vi~GGik~ 187 (425)
T TIGR00835 116 GGPMYYIKKGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAF-N---VP---KLVTGIVLTVLTALIIFGGLKR 187 (425)
T ss_pred cChHHHHHHHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHc-C---Cc---HHHHHHHHHHHHHHHHhcCchH
Confidence 455588888765 6666665544 333323345666677776666422 2 22 3344545555555554447776
Q ss_pred cccc
Q psy931 104 LTCS 107 (108)
Q Consensus 104 ~~~i 107 (108)
.+|+
T Consensus 188 Ia~v 191 (425)
T TIGR00835 188 IAKI 191 (425)
T ss_pred HHHH
Confidence 6553
No 53
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=82.89 E-value=17 Score=27.90 Aligned_cols=91 Identities=18% Similarity=0.211 Sum_probs=54.1
Q ss_pred HhhHHHHhcccccc-------cCCcchhhhHHHhCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChH
Q psy931 9 YRMFPPESLGTMIP-------KSGGDYAYINEAFGPL-PAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYS 80 (108)
Q Consensus 9 ~~a~~~ael~s~~P-------~~GG~y~y~~~~~g~~-~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~ 80 (108)
.+.++=+-|+..|. -.||+-.|.++.+|.+ .+-+.+...........+...+.+.++-+...+ + .|
T Consensus 109 at~f~E~~La~~Yr~kd~~G~~~GGP~yYi~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af-~---~~-- 182 (452)
T COG1115 109 ATKFAESTLAQKYRVKDKDGEYRGGPAYYIEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAF-G---IP-- 182 (452)
T ss_pred HHHHHHHHHHhheeEeCCCCCCcCChHHHHHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhc-C---Cc--
Confidence 33344444666655 1478999999999864 444444222233222456677777777777643 3 12
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccc
Q psy931 81 AVRLLAAVITCLLTAINCYNKYHLTC 106 (108)
Q Consensus 81 ~~~~i~~~~i~l~~~iN~~g~k~~~~ 106 (108)
....++.+.++...+-+-|+|.-+|
T Consensus 183 -~~~~gi~la~l~~~VI~GGi~rIa~ 207 (452)
T COG1115 183 -PLVTGIVLALLVALVIFGGIKRIAK 207 (452)
T ss_pred -HHHHHHHHHHHHHHHHHcchHHHHH
Confidence 4555666666667777777776554
No 54
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=79.97 E-value=18 Score=27.35 Aligned_cols=76 Identities=17% Similarity=0.195 Sum_probs=39.2
Q ss_pred CCcchhhhHHHhCchh-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHHHHHHHHHHHhccc
Q psy931 24 SGGDYAYINEAFGPLP-AFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCYNKY 102 (108)
Q Consensus 24 ~GG~y~y~~~~~g~~~-gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~i~~~~i~l~~~iN~~g~k 102 (108)
.||...|.++.+|+++ +.+.+-..............+.+.++-+.+.+ + .| ....++++..+..++-+-|+|
T Consensus 87 ~GGP~yyi~~gl~~k~la~~fai~~~~~~~~~~~~~Q~nsi~~~~~~~f-~---i~---~~~~gi~l~~l~~~vi~GGik 159 (416)
T PF01235_consen 87 RGGPMYYIEKGLGSKWLAILFAIFLIIAFGIGFNMVQANSIADALSSAF-G---IP---PWITGIILAILVALVIFGGIK 159 (416)
T ss_pred eecHHHHHHHHhccchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhc-c---cc---HHHHHHHHHHHHHHHHHcchh
Confidence 4899999999998863 22222221111111113344444444444322 2 22 344555666666666666777
Q ss_pred cccc
Q psy931 103 HLTC 106 (108)
Q Consensus 103 ~~~~ 106 (108)
..+|
T Consensus 160 rI~~ 163 (416)
T PF01235_consen 160 RIAK 163 (416)
T ss_pred HHHH
Confidence 6554
No 55
>PF13317 DUF4088: Protein of unknown function (DUF4088)
Probab=46.82 E-value=9.6 Score=25.94 Aligned_cols=16 Identities=31% Similarity=0.665 Sum_probs=13.9
Q ss_pred cCCcchhhhHHHhCch
Q psy931 23 KSGGDYAYINEAFGPL 38 (108)
Q Consensus 23 ~~GG~y~y~~~~~g~~ 38 (108)
-.||+|.|+++.|.|-
T Consensus 49 l~~GqYaWAkr~~DK~ 64 (229)
T PF13317_consen 49 LQGGQYAWAKRVFDKQ 64 (229)
T ss_pred HhcchhHHHHHHhhhh
Confidence 4799999999988874
No 56
>KOG3659|consensus
Probab=26.25 E-value=95 Score=24.95 Aligned_cols=29 Identities=10% Similarity=-0.143 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccC
Q psy931 80 SAVRLLAAVITCLLTAINCYNKYHLTCSV 108 (108)
Q Consensus 80 ~~~~~i~~~~i~l~~~iN~~g~k~~~~i~ 108 (108)
+...+-...+.++..+.-+.|+|.+||+|
T Consensus 252 ~~~~lc~~lv~~liyf~~~kG~kssGKvv 280 (629)
T KOG3659|consen 252 WTLALCLVLVWLLIYFSLWKGVKSSGKVV 280 (629)
T ss_pred hHHHHHHHHHHHHHHHHHhccccccceEE
Confidence 44444455555666778889999999975
No 57
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=25.93 E-value=2.8e+02 Score=20.55 Aligned_cols=58 Identities=14% Similarity=0.089 Sum_probs=33.0
Q ss_pred hHHHHhcccccccCCc-chhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q psy931 11 MFPPESLGTMIPKSGG-DYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQ 69 (108)
Q Consensus 11 a~~~ael~s~~P~~GG-~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~ 69 (108)
+...+-.+..=|+.|= .....|..||++-+.+......+. .....+.++...++.+..
T Consensus 43 ~~~~~l~~~~G~~~Gl~~~v~sR~~FG~~Gs~~~~~l~~i~-~igW~~v~~~~gg~~l~~ 101 (386)
T TIGR02358 43 VLLLSAAGVIGADTGLSAMGSLKLSLGSKGSVLPSLLNLLQ-LVGWTAVMIIVGAKAASL 101 (386)
T ss_pred HHHHHHHHHhhcccCcCHHHHHHHHHccchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3333434444455543 455677899998777777665543 244455555555655554
No 58
>PF12051 DUF3533: Protein of unknown function (DUF3533); InterPro: IPR022703 This transmembrane domain is functionally uncharacterised. It is found in bacterial and eukaryotic proteins.
Probab=22.00 E-value=3.3e+02 Score=20.09 Aligned_cols=38 Identities=13% Similarity=0.185 Sum_probs=22.2
Q ss_pred HHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHH
Q psy931 4 LREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVAL 48 (108)
Q Consensus 4 ~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~ 48 (108)
....++..++|.-+...+-..- .+.||+ .||+.-|+..
T Consensus 253 ~~~~~~~Sl~~~~v~~af~~~~------~~~~g~-~gf~v~Wm~~ 290 (382)
T PF12051_consen 253 WIAYFFLSLFYSLVSLAFQVDF------TVAFGK-GGFVVYWMFS 290 (382)
T ss_pred HHHHHHHHHHHHHHHHHHCCCc------cccCCC-CcHHHHHHHH
Confidence 3444555555555554443222 456788 7888888754
Done!