Query psy931
Match_columns 108
No_of_seqs 133 out of 1024
Neff 8.8
Searched_HMMs 29240
Date Sat Aug 17 00:07:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy931.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/931hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.6 7.9E-16 2.7E-20 111.6 9.0 103 2-107 48-150 (445)
2 4djk_A Probable glutamate/gamm 99.6 1.6E-15 5.5E-20 111.7 8.8 98 8-107 55-155 (511)
3 3gia_A Uncharacterized protein 99.6 2.5E-14 8.4E-19 103.8 11.3 103 2-107 47-150 (444)
4 2jln_A MHP1; hydantoin, transp 67.0 21 0.00073 26.2 6.8 44 6-49 68-112 (501)
5 2ww9_C Protein transport prote 26.1 62 0.0021 18.3 2.7 24 77-100 59-82 (87)
6 2wwb_C SEC61BETA, protein tran 19.8 49 0.0017 19.0 1.4 22 79-100 70-91 (96)
7 3dh4_A Sodium/glucose cotransp 19.3 2.8E+02 0.0094 20.4 7.0 25 23-47 81-105 (530)
8 2xq2_A Sodium/glucose cotransp 9.0 6.1E+02 0.021 18.8 9.8 24 23-46 110-133 (593)
9 3rlb_A THIT; S-component, ECF 7.8 3E+02 0.01 17.6 2.6 42 4-48 26-74 (192)
10 2bsj_A Chaperone protein SYCT; 5.4 93 0.0032 18.5 -0.7 13 14-26 54-66 (133)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.64 E-value=7.9e-16 Score=111.57 Aligned_cols=103 Identities=17% Similarity=0.247 Sum_probs=88.2
Q ss_pred chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy931 2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA 81 (108)
Q Consensus 2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~ 81 (108)
++.+.+++.+++|+|+++++|++||.|+|+++.+||..||+.+|.+++.+ ....+..+..+++|+.. ++|+.+ ++++
T Consensus 48 i~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~~g~~~g~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~-~~~~ 124 (445)
T 3l1l_A 48 VTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLAC-WIGNIAMVVIGVGYLSY-FFPILK-DPWV 124 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHSCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTT-TCGGGG-SHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHcCChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HCcccc-ccHH
Confidence 45677899999999999999999999999999999999999999999875 55667788888999876 456532 3466
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccc
Q psy931 82 VRLLAAVITCLLTAINCYNKYHLTCS 107 (108)
Q Consensus 82 ~~~i~~~~i~l~~~iN~~g~k~~~~i 107 (108)
..+++++++++++.+|++|+|..+|+
T Consensus 125 ~~~~~~~~~~~~~~in~~g~~~~~~~ 150 (445)
T 3l1l_A 125 LTITCVVVLWIFVLLNIVGPKMITRV 150 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 77888899999999999999998874
No 2
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.62 E-value=1.6e-15 Score=111.68 Aligned_cols=98 Identities=14% Similarity=0.130 Sum_probs=78.0
Q ss_pred HHhhHHHHhccc--ccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhh-CCCCCCChHHHHH
Q psy931 8 YYRMFPPESLGT--MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPI-WPHCDPPYSAVRL 84 (108)
Q Consensus 8 l~~a~~~ael~s--~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~-~~~~~~~~~~~~~ 84 (108)
++.+++++|+++ ++| +||.|+|+++.+||+.||+.+|.+++.+ ....+......++++...+ .|+.+++++...+
T Consensus 55 l~~al~~ael~s~~~~P-~GG~y~~~~~~~g~~~g~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 132 (511)
T 4djk_A 55 IPVGLCAAEMATVDGWE-EGGVFAWVSNTLGPRWGFAAISFGYLQI-AIGFIPMLYFVLGALSYILKWPALNEDPITKTI 132 (511)
T ss_dssp HHHHHHHHHHHTTSCC----CHHHHHHHHHCHHHHHHHHHHHHHHH-HHHTHHHHHHHHHHHHTTTTCGGGTSCSSHHHH
T ss_pred HHHHHHHHHHcccccCC-CCChhhhHHhhcCchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCcccccCcHHHHH
Confidence 458999999999 999 9999999999999999999999999875 4455666666677775432 4555555567888
Q ss_pred HHHHHHHHHHHHHHhcccccccc
Q psy931 85 LAAVITCLLTAINCYNKYHLTCS 107 (108)
Q Consensus 85 i~~~~i~l~~~iN~~g~k~~~~i 107 (108)
++++++++++.+|++|+|..+|+
T Consensus 133 ~~~~~~~~~~~in~~g~~~~~~~ 155 (511)
T 4djk_A 133 AALIILWALALTQFGGTKYTARI 155 (511)
T ss_dssp HHHHHHHHHHHHHHTCSSSHHHH
T ss_pred HHHHHHHHHHHHHHhChHHHHHH
Confidence 89999999999999999998874
No 3
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.57 E-value=2.5e-14 Score=103.77 Aligned_cols=103 Identities=19% Similarity=0.153 Sum_probs=85.6
Q ss_pred chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchh-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChH
Q psy931 2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLP-AFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYS 80 (108)
Q Consensus 2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~-gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~ 80 (108)
++.+.+++.+++++|+++++|++||.|+|+++.+||+. +...+|.+++.+ ....+..+..+++|+... +|.. ++++
T Consensus 47 i~~~~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~G~~~~~g~~~~~~~~~~-~~~~a~~~~~~~~~~~~~-~~~~-~~~~ 123 (444)
T 3gia_A 47 LSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIGDNIITGALSILLWMSY-VISIALFAKGFAGYFLPL-INAP-INTF 123 (444)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHHCSSHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-TTCC-CCHH
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCcHHHhHHHHhCcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-hCCC-CchH
Confidence 45677899999999999999999999999999999963 444579888875 667888899999999874 4643 3456
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccc
Q psy931 81 AVRLLAAVITCLLTAINCYNKYHLTCS 107 (108)
Q Consensus 81 ~~~~i~~~~i~l~~~iN~~g~k~~~~i 107 (108)
+..+++.+++++++.+|++|+|..+|+
T Consensus 124 ~~~~~~~~~~~~~~~in~~g~~~~~~~ 150 (444)
T 3gia_A 124 NIAITEIGIVAFFTALNFFGSKAVGRA 150 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 667888899999999999999998774
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=66.98 E-value=21 Score=26.21 Aligned_cols=44 Identities=7% Similarity=-0.004 Sum_probs=28.9
Q ss_pred HHHHhhHHHHhcccccccCCcchh-hhHHHhCchhHHHHHHHHHH
Q psy931 6 EAYYRMFPPESLGTMIPKSGGDYA-YINEAFGPLPAFLYMWVALF 49 (108)
Q Consensus 6 ~al~~a~~~ael~s~~P~~GG~y~-y~~~~~g~~~gf~~gw~~~~ 49 (108)
..++.+...+-++..=|+.|-.+. .+|..||++.+.+...+..+
T Consensus 68 G~li~~~~~~l~~~~G~~~Gl~~~v~~R~~FG~~Gs~i~~ll~~i 112 (501)
T 2jln_A 68 GCTIAVILLFFTQSAAIRWGINFTVAARMPFGIRGSLIPITLKAL 112 (501)
T ss_dssp HHHHHHHHHHHHTHHHHHHCCCHHHHTTTTSCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHhhcCCChhhhhHhhcchhHHHHHHHHHHH
Confidence 334444555555666666666665 77889999888877766544
No 5
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=26.11 E-value=62 Score=18.26 Aligned_cols=24 Identities=13% Similarity=0.041 Sum_probs=14.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhc
Q psy931 77 PPYSAVRLLAAVITCLLTAINCYN 100 (108)
Q Consensus 77 ~~~~~~~~i~~~~i~l~~~iN~~g 100 (108)
.++.....++++++....++|++|
T Consensus 59 V~P~~VLv~sl~FIa~VilLHI~g 82 (87)
T 2ww9_C 59 VDSLVVLFLSVGFIFSVIALHLLT 82 (87)
T ss_dssp CCHHHHHHHHHHHHHHHHHC----
T ss_pred EcCeeehhhHHHHHHHHHHHHHhh
Confidence 345556667788888888888775
No 6
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=19.78 E-value=49 Score=19.03 Aligned_cols=22 Identities=5% Similarity=0.135 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhc
Q psy931 79 YSAVRLLAAVITCLLTAINCYN 100 (108)
Q Consensus 79 ~~~~~~i~~~~i~l~~~iN~~g 100 (108)
+.....++++++.++.++|+++
T Consensus 70 P~~VLv~sl~Fi~~Vi~Lhi~~ 91 (96)
T 2wwb_C 70 PVPVLVMSLLFIASVFMLHIWG 91 (96)
T ss_dssp SCSHHHHHHHHHHHHHHHSCSS
T ss_pred CEEehhhHHHHHHHHHHHHHhh
Confidence 3456677788888888888764
No 7
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=19.32 E-value=2.8e+02 Score=20.37 Aligned_cols=25 Identities=4% Similarity=-0.122 Sum_probs=18.6
Q ss_pred cCCcchhhhHHHhCchhHHHHHHHH
Q psy931 23 KSGGDYAYINEAFGPLPAFLYMWVA 47 (108)
Q Consensus 23 ~~GG~y~y~~~~~g~~~gf~~gw~~ 47 (108)
+.-..++|.+++||++...+.+...
T Consensus 81 ~~~T~~e~l~~Rfg~~~~~~~a~~~ 105 (530)
T 3dh4_A 81 GIYTIPEFVEKRFNKKLKTILAVFW 105 (530)
T ss_dssp TCCSHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHcCcHHHHHHHHHH
Confidence 3456788999999998777666543
No 8
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=8.97 E-value=6.1e+02 Score=18.83 Aligned_cols=24 Identities=4% Similarity=-0.078 Sum_probs=17.9
Q ss_pred cCCcchhhhHHHhCchhHHHHHHH
Q psy931 23 KSGGDYAYINEAFGPLPAFLYMWV 46 (108)
Q Consensus 23 ~~GG~y~y~~~~~g~~~gf~~gw~ 46 (108)
+.-..++|.+++||++..-+....
T Consensus 110 ~~~T~~e~l~~Rfg~~~~~~~ai~ 133 (593)
T 2xq2_A 110 GIYTIPEFVEKRFNKKLKTILAVF 133 (593)
T ss_dssp TCCSHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHccCchHHHHHHH
Confidence 445688899999999877666544
No 9
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=7.79 E-value=3e+02 Score=17.57 Aligned_cols=42 Identities=5% Similarity=-0.289 Sum_probs=26.8
Q ss_pred HHHHHHhhHHHHhcccccccCCcchhhhH-------HHhCchhHHHHHHHHH
Q psy931 4 LREAYYRMFPPESLGTMIPKSGGDYAYIN-------EAFGPLPAFLYMWVAL 48 (108)
Q Consensus 4 ~~~al~~a~~~ael~s~~P~~GG~y~y~~-------~~~g~~~gf~~gw~~~ 48 (108)
++.|+...+++-++ .+|. |+..+... -.+|++.|.+.|...-
T Consensus 26 ll~Ala~VL~~i~~--~iP~-~~~it~~~iPiii~a~~~Gp~~G~~~g~i~g 74 (192)
T 3rlb_A 26 FMAALAFIISLIPN--TVYG-WIIVEIACIPILLLSLRRGLTAGLVGGLIWG 74 (192)
T ss_dssp HHHHHHHHHTTSCC--EEET-TEECCGGGHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc--ccCC-chhhhHHHHHHHHHHHHHChHHHHHHHHHHH
Confidence 44555555565554 4674 56655532 4789999999987643
No 10
>2bsj_A Chaperone protein SYCT; type III secretion, effector, YOPT; 1.83A {Yersinia enterocolitica} PDB: 2bho_A 2bsh_A 2bsi_A
Probab=5.38 E-value=93 Score=18.47 Aligned_cols=13 Identities=23% Similarity=0.429 Sum_probs=9.3
Q ss_pred HHhcccccccCCc
Q psy931 14 PESLGTMIPKSGG 26 (108)
Q Consensus 14 ~ael~s~~P~~GG 26 (108)
|+||++..|....
T Consensus 54 f~ELG~~~p~~~n 66 (133)
T 2bsj_A 54 FSELGADLPTNDN 66 (133)
T ss_dssp EEECSSCCCCCCC
T ss_pred HHHHccccccccc
Confidence 6788888886544
Done!