Query psy931
Match_columns 108
No_of_seqs 133 out of 1024
Neff 8.8
Searched_HMMs 13730
Date Sat Aug 17 00:07:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy931.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/931hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e1ba1 b.43.3.6 (A:1-87) AlaX 9.9 41 0.003 17.2 0.6 9 19-27 36-44 (87)
2 d1jb0f_ f.23.16.1 (F:) Subunit 6.1 1.3E+02 0.0098 16.9 1.7 7 42-48 73-79 (141)
3 d2akla2 g.41.3.5 (A:3-40) Hypo 5.2 74 0.0054 13.8 0.2 11 21-31 6-16 (38)
4 d2jxta1 d.355.1.1 (A:1-78) Rib 4.6 88 0.0064 15.7 0.2 13 10-22 36-48 (78)
5 d1t98a2 a.47.6.1 (A:119-281) C 3.4 2.4E+02 0.018 16.1 1.5 36 3-38 4-42 (163)
6 d1o5ha_ a.191.1.1 (A:) Hypothe 2.9 1.7E+02 0.012 17.2 0.4 12 15-26 12-23 (200)
7 d1ov9a_ a.155.1.1 (A:) H-NS-li 2.7 82 0.006 14.1 -1.0 12 94-105 5-16 (45)
8 d2a29a1 d.220.1.1 (A:316-451) 2.6 2.4E+02 0.017 14.8 0.9 26 9-34 19-44 (136)
9 d2ysca1 b.72.1.1 (A:8-33) Amyl 2.6 94 0.0068 12.1 -0.7 12 19-30 7-18 (26)
10 d1ak2a2 g.41.2.1 (A:147-176) M 2.5 1.9E+02 0.014 11.6 0.2 8 22-29 1-8 (30)
No 1
>d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=9.87 E-value=41 Score=17.19 Aligned_cols=9 Identities=33% Similarity=0.833 Sum_probs=5.9
Q ss_pred cccccCCcc
Q psy931 19 TMIPKSGGD 27 (108)
Q Consensus 19 s~~P~~GG~ 27 (108)
.-||.+||+
T Consensus 36 ~FYpegGGQ 44 (87)
T d2e1ba1 36 IFYPTGGGQ 44 (87)
T ss_dssp CSCCCCTTC
T ss_pred ccccCCCCC
Confidence 357777775
No 2
>d1jb0f_ f.23.16.1 (F:) Subunit III of photosystem I reaction centre, PsaF {Synechococcus elongatus [TaxId: 32046]}
Probab=6.05 E-value=1.3e+02 Score=16.94 Aligned_cols=7 Identities=14% Similarity=0.677 Sum_probs=2.9
Q ss_pred HHHHHHH
Q psy931 42 LYMWVAL 48 (108)
Q Consensus 42 ~~gw~~~ 48 (108)
++||+.|
T Consensus 73 IAGwIGW 79 (141)
T d1jb0f_ 73 IAGWIGW 79 (141)
T ss_dssp HHHHHHH
T ss_pred Hhhhhhh
Confidence 3444443
No 3
>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=5.20 E-value=74 Score=13.85 Aligned_cols=11 Identities=27% Similarity=0.761 Sum_probs=6.9
Q ss_pred cccCCcchhhh
Q psy931 21 IPKSGGDYAYI 31 (108)
Q Consensus 21 ~P~~GG~y~y~ 31 (108)
-|+.++.|.|-
T Consensus 6 CP~C~seytYe 16 (38)
T d2akla2 6 CPQCNSEYTYE 16 (38)
T ss_dssp CTTTCCCCCEE
T ss_pred CCCCCCcceEc
Confidence 35667777663
No 4
>d2jxta1 d.355.1.1 (A:1-78) Ribosomal protein LX, RplX {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=4.60 E-value=88 Score=15.75 Aligned_cols=13 Identities=8% Similarity=-0.161 Sum_probs=8.9
Q ss_pred hhHHHHhcccccc
Q psy931 10 RMFPPESLGTMIP 22 (108)
Q Consensus 10 ~a~~~ael~s~~P 22 (108)
.-.+|+|++|++-
T Consensus 36 ~e~~Ys~~gSrHr 48 (78)
T d2jxta1 36 YERLYSEFGSKHR 48 (78)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHhhhcC
Confidence 3457888888764
No 5
>d1t98a2 a.47.6.1 (A:119-281) Chromosome partition protein MukF (KicB), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=3.42 E-value=2.4e+02 Score=16.07 Aligned_cols=36 Identities=19% Similarity=0.363 Sum_probs=26.4
Q ss_pred hHHHHHHhhHHHHhcccccc---cCCcchhhhHHHhCch
Q psy931 3 TLREAYYRMFPPESLGTMIP---KSGGDYAYINEAFGPL 38 (108)
Q Consensus 3 ~~~~al~~a~~~ael~s~~P---~~GG~y~y~~~~~g~~ 38 (108)
|+..++....+-.|+..+.. +.|..++|=++.|+|.
T Consensus 4 ~lrLSiqls~va~el~~a~~aA~~~~de~~Wr~~V~apL 42 (163)
T d1t98a2 4 TLRLSMQLSIVAGELKRAADAAEEGGDEFHWHRNVYAPL 42 (163)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHTHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhhhh
Confidence 45666677777777766543 5788999999988883
No 6
>d1o5ha_ a.191.1.1 (A:) Hypothetical protein TM1560 {Thermotoga maritima [TaxId: 2336]}
Probab=2.85 E-value=1.7e+02 Score=17.19 Aligned_cols=12 Identities=25% Similarity=0.584 Sum_probs=7.9
Q ss_pred HhcccccccCCc
Q psy931 15 ESLGTMIPKSGG 26 (108)
Q Consensus 15 ael~s~~P~~GG 26 (108)
-++++.-|..||
T Consensus 12 ~~las~~ptPGG 23 (200)
T d1o5ha_ 12 DMVAERKPTPGG 23 (200)
T ss_dssp HHHHSSSSSSCH
T ss_pred HHHcCCCCCCCc
Confidence 456777777665
No 7
>d1ov9a_ a.155.1.1 (A:) H-NS-like protein VicH {Vibrio cholerae [TaxId: 666]}
Probab=2.69 E-value=82 Score=14.14 Aligned_cols=12 Identities=17% Similarity=0.052 Sum_probs=6.6
Q ss_pred HHHHHhcccccc
Q psy931 94 TAINCYNKYHLT 105 (108)
Q Consensus 94 ~~iN~~g~k~~~ 105 (108)
.++|+++.|...
T Consensus 5 ~llNiRSLRA~~ 16 (45)
T d1ov9a_ 5 TLLNIRSLRAYA 16 (45)
T ss_dssp HHTCHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 355666665443
No 8
>d2a29a1 d.220.1.1 (A:316-451) Potassium-transporting ATPase B chain, KdpB {Escherichia coli [TaxId: 562]}
Probab=2.65 E-value=2.4e+02 Score=14.80 Aligned_cols=26 Identities=12% Similarity=0.004 Sum_probs=18.0
Q ss_pred HhhHHHHhcccccccCCcchhhhHHH
Q psy931 9 YRMFPPESLGTMIPKSGGDYAYINEA 34 (108)
Q Consensus 9 ~~a~~~ael~s~~P~~GG~y~y~~~~ 34 (108)
+.....+|..|.+|.+=....|+++.
T Consensus 19 l~~AA~aE~~SeHPlakAIv~~Ak~~ 44 (136)
T d2a29a1 19 ADAAQLASLADETPEGRSIVILAKQR 44 (136)
T ss_dssp HHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHh
Confidence 33445667788888877777777654
No 9
>d2ysca1 b.72.1.1 (A:8-33) Amyloid beta A4 precursor protein-binding family B member 3, APBB3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.62 E-value=94 Score=12.13 Aligned_cols=12 Identities=25% Similarity=0.548 Sum_probs=0.0
Q ss_pred cccccCCcchhh
Q psy931 19 TMIPKSGGDYAY 30 (108)
Q Consensus 19 s~~P~~GG~y~y 30 (108)
.++.+..|.|.|
T Consensus 7 ~~i~D~ag~YyW 18 (26)
T d2ysca1 7 RKIHDAAGTYYW 18 (26)
T ss_dssp EEEEETTEEEEE
T ss_pred eeeeccCceEEE
No 10
>d1ak2a2 g.41.2.1 (A:147-176) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Probab=2.52 E-value=1.9e+02 Score=11.61 Aligned_cols=8 Identities=50% Similarity=1.016 Sum_probs=0.0
Q ss_pred ccCCcchh
Q psy931 22 PKSGGDYA 29 (108)
Q Consensus 22 P~~GG~y~ 29 (108)
|.+|-.|+
T Consensus 1 P~sG~~Yh 8 (30)
T d1ak2a2 1 PQSGRSYH 8 (30)
T ss_dssp TTTCCEEB
T ss_pred CCCCCCcc
Done!