RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy931
(108 letters)
>gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter. [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 501
Score = 108 bits (272), Expect = 3e-29
Identities = 47/84 (55%), Positives = 58/84 (69%)
Query: 17 LGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCD 76
LGT IPKSGG+Y YI E FGPL AFL +W+ L VI P AV AL FA YIL P++P C+
Sbjct: 100 LGTTIPKSGGEYNYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCE 159
Query: 77 PPYSAVRLLAAVITCLLTAINCYN 100
P A+RL+A + LLT +NC +
Sbjct: 160 VPEWAIRLVAVLCVLLLTLVNCLS 183
>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease.
Length = 425
Score = 48.5 bits (116), Expect = 7e-08
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 17 LGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCD 76
L + P++GG Y ++ AFG AF+ W + G A ++ AQY+L +P
Sbjct: 54 LSSAFPRNGGIYVWLKNAFGKPVAFIAAWFNWLAYIL-GLASSSSVAAQYLLSAFFPDLV 112
Query: 77 PPYSAVRLLAAVITCLLTAINCY 99
+A I + IN
Sbjct: 113 GNTWLTYGIAIAILIIFALINIR 135
>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and
metabolism].
Length = 466
Score = 43.6 bits (103), Expect = 4e-06
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 17 LGTMIPKSGGDYAYINEAFGPLPAFLYMWVALF--VIMPTGNAVTALTFAQYILQPIWPH 74
L + IP +GG YAY A GP FL W+ L VI A+ A ++ Y+ P
Sbjct: 68 LSSAIPSAGGAYAYAKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLF-PGPGL 126
Query: 75 CDPPYSAVRLLAAVITCLLTAINCY 99
+ L+A + LLT +N
Sbjct: 127 LSIGPLLIILIALALIALLTLLNLR 151
>gnl|CDD|183096 PRK11357, frlA, putative fructoselysine transporter; Provisional.
Length = 445
Score = 37.5 bits (87), Expect = 5e-04
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 17 LGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYI 67
L T P++G DY Y+ A AFL W + + ++ AL +
Sbjct: 66 LSTAYPENGADYVYLKNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNL 116
>gnl|CDD|129986 TIGR00908, 2A0305, ethanolamine permease. The three genes used as
the seed for this model (from Burkholderia pseudomallei,
Pseudomonas aeruginosa and Clostridium acetobutylicum
are all adjacent to genes for the catabolism of
ethanolamine. Most if not all of the hits to this model
have a similar arrangement of genes. This group is a
member of the Amino Acid-Polyamine-Organocation (APC)
Superfamily [Transport and binding proteins, Amino
acids, peptides and amines].
Length = 442
Score = 35.2 bits (81), Expect = 0.003
Identities = 26/91 (28%), Positives = 29/91 (31%), Gaps = 11/91 (12%)
Query: 11 MFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVAL--FVIMPTGNAVTALTFAQYIL 68
F L TMIP +GG Y + AFGP FL L F P A Y
Sbjct: 57 CFSLAELSTMIPTAGGGYGFARRAFGPWGGFLAGTAILIEFAFAP---PAIACFIGAYC- 112
Query: 69 QPIWPHCDPPYSAVRLLAAVITCLLTAINCY 99
P L A V + IN
Sbjct: 113 -----ESLFPVGPGWLAALVFYIVFIGINIL 138
>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter. [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 429
Score = 34.0 bits (78), Expect = 0.007
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 17 LGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYI 67
L M+P +G Y Y EA G L AF+ W L++ A A+ + Y+
Sbjct: 59 LAAMLPVAGSPYTYAYEAMGELTAFIIGWS-LWLEYGVAVAAVAVGWGGYL 108
>gnl|CDD|163525 TIGR03813, put_Glu_GABA_T, putative glutamate/gamma-aminobutyrate
antiporter. Members of this protein family are
putative putative glutamate/gamma-aminobutyrate
antiporters. Each member of the seed alignment is found
adjacent to a glutamate decarboxylase, which converts
glutamate (Glu) to gamma-aminobutyrate (GABA). However,
the majority belong to genome contexts with a
glutaminase (converts Gln to Glu) as well as the
decarboxylase that converts Glu to GABA. The
specificity of the transporter remains uncertain.
Length = 474
Score = 33.3 bits (76), Expect = 0.015
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 17 LGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFA 64
L T P+ GG + ++ EAFG FL +++ + T LTF
Sbjct: 54 LATAWPEKGGVFRWVGEAFGARWGFLAIFMLWAQVTIW--FPTVLTFG 99
>gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease.
Length = 473
Score = 30.0 bits (68), Expect = 0.17
Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 12/85 (14%)
Query: 17 LGTMIPKSGGDYAYINE----AFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIW 72
+ T P +GG YAY + + G + Y +FVI +TA A ++Q
Sbjct: 52 MSTNGPVAGGFYAYASRFLGPSLGFATGWNYWLSWIFVIA---LELTA---ASILIQFWE 105
Query: 73 PHCDPPYSAVRLLAAVITCLLTAIN 97
D PY V AV LL IN
Sbjct: 106 LVPDIPYLWV--WGAVFIVLLLIIN 128
>gnl|CDD|224038 COG1113, AnsP, Gamma-aminobutyrate permease and related permeases
[Amino acid transport and metabolism].
Length = 462
Score = 29.5 bits (67), Expect = 0.28
Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 18/89 (20%)
Query: 16 SLGTMI---PKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNA-VTAL-TFAQYIL-- 68
+LG M+ P SG Y + GP FL W F + G A +TA+ + Q+
Sbjct: 65 ALGEMLVANPVSGSFSDYARKYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPD 124
Query: 69 QPIWPHCDPPYSAVRLLAAVITCLLTAIN 97
P W + A LL A+N
Sbjct: 125 VPQW-----------VFALAAVVLLLAVN 142
>gnl|CDD|214701 smart00506, A1pp, Appr-1"-p processing enzyme. Function determined
by Martzen et al. Extended family detected by reciprocal
PSI-BLAST searches (unpublished results, and Pehrson &
Fuji).
Length = 133
Score = 28.4 bits (64), Expect = 0.47
Identities = 18/84 (21%), Positives = 24/84 (28%), Gaps = 6/84 (7%)
Query: 20 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTF---AQYILQPIWPHC- 75
G A I A G + + P G AV A+Y++ + P
Sbjct: 25 GAHGGGVAGA-IARAAGKALSKEEVRKLAGGECPVGTAVVTEGGNLPAKYVIHAVGPRAS 83
Query: 76 -DPPYSAVRLLAAVITCLLTAINC 98
L A CL AI
Sbjct: 84 GHSKEGFELLENAYRNCLELAIEL 107
>gnl|CDD|182613 PRK10644, PRK10644, arginine:agmatin antiporter; Provisional.
Length = 445
Score = 27.8 bits (62), Expect = 1.1
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 17 LGTMIPKSGGDYAYINEAFGP 37
+ ++ P GG YAY FGP
Sbjct: 63 MSSLDPSPGGSYAYARRCFGP 83
>gnl|CDD|235476 PRK05454, PRK05454, glucosyltransferase MdoH; Provisional.
Length = 605
Score = 27.9 bits (63), Expect = 1.1
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 44 MWVALFVIMPTGNAVTALT----FAQYILQPIWPHCDPPYSAVRLLAAVITCLL 93
+W+ ++ ALT F L P+WP DP A+ L AA + L
Sbjct: 408 LWLLFLLLGTALALQAALTEPEYFQPRQLFPVWPQWDPE-LAIALFAATMVLLF 460
>gnl|CDD|218444 pfam05118, Asp_Arg_Hydrox, Aspartyl/Asparaginyl beta-hydroxylase.
Iron (II)/2-oxoglutarate (2-OG)-dependent oxygenases
catalyze oxidative reactions in a range of metabolic
processes. Proline 3-hydroxylase hydroxylates proline at
position 3, the first of a 2-OG oxygenase catalyzing
oxidation of a free alpha-amino acid. The structure of
proline 3-hydroxylase contains the conserved motifs
present in other 2-OG oxygenases including a jelly roll
strand core and residues binding iron and
2-oxoglutarate, consistent with divergent evolution
within the extended family. This family represent the
arginine, asparagine and proline hydroxylases. The
aspartyl/asparaginyl beta-hydroxylase (EC:1.14.11.16)
specifically hydroxylates one aspartic or asparagine
residue in certain epidermal growth factor-like domains
of a number of proteins.
Length = 162
Score = 27.0 bits (60), Expect = 1.7
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 67 ILQP---IWPHCDPPYSAVRLLAAVIT 90
L P I PHCDP ++RL + T
Sbjct: 85 ELPPGAHIRPHCDPTNGSLRLHLGLDT 111
>gnl|CDD|178585 PLN03008, PLN03008, Phospholipase D delta.
Length = 868
Score = 26.6 bits (58), Expect = 3.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 63 FAQYILQPIWPHCDPPYSAVR 83
FA Y++ P+WP DP V+
Sbjct: 627 FAVYVVIPLWPEGDPKSGPVQ 647
>gnl|CDD|165129 PHA02764, PHA02764, hypothetical protein; Provisional.
Length = 399
Score = 26.5 bits (58), Expect = 3.2
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 6/28 (21%)
Query: 8 YYRMFPPESLGTMIPKSGGDYAYINEAF 35
YY+ L T P +GGDYAYI AF
Sbjct: 66 YYK------LTTKFPLNGGDYAYIRTAF 87
>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1. Terpene
cyclases, Class 1 (C1) of the class 1 family of
isoprenoid biosynthesis enzymes, which share the
'isoprenoid synthase fold' and convert linear,
all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-,
or geranylgeranyl (C20)-diphosphate into numerous cyclic
forms of monoterpenes, diterpenes, and sesquiterpenes.
Also included in this CD are the cis-trans terpene
cyclases such as trichodiene synthase. The class I
terpene cyclization reactions proceed via electrophilic
alkylations in which a new carbon-carbon single bond is
generated through interaction between a highly reactive
electron-deficient allylic carbocation and an
electron-rich carbon-carbon double bond. The catalytic
site consists of a large central cavity formed by mostly
antiparallel alpha helices with two aspartate-rich
regions located on opposite walls. These residues
mediate binding of prenyl phosphates via bridging Mg2+
ions, inducing proposed conformational changes that
close the active site to solvent, stabilizing reactive
carbocation intermediates. Mechanistically and
structurally distinct, class II terpene cyclases and
cis-IPPS are not included in this CD. Taxonomic
distribution includes bacteria, fungi and plants.
Length = 284
Score = 26.2 bits (58), Expect = 4.0
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 76 DPPYSAVRLLAAVITCLLTAINCYNKYHLT 105
+P YS R+ A LLT I+ + T
Sbjct: 42 EPQYSEARIALAKTIALLTVIDDTYDDYGT 71
>gnl|CDD|129983 TIGR00905, 2A0302, transporter, basic amino acid/polyamine
antiporter (APA) family. This family includes several
families of antiporters that, rather commonly, are
encoded next to decarboxylases that convert one of the
antiporter substrates into the other. This arrangement
allows a cycle that can remove proteins from the
cytoplasm and thereby protect against acidic conditions
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 473
Score = 26.2 bits (58), Expect = 4.1
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 16 SLGTMIP-KSGGDYAYINEAFGPLPAFLYMW 45
L T P GG YAY E FGP F+ W
Sbjct: 63 ILATKKPELDGGIYAYAREGFGPYIGFMSGW 93
>gnl|CDD|198347 cd07769, FGGY_GK, Glycerol kinases; a subfamily of the FGGY
family of carbohydrate kinases. This subfamily
includes glycerol kinases (GK; EC 2.7.1.30) and
glycerol kinase-like proteins from all three kingdoms
of living organisms. Glycerol is an important
intermediate of energy metabolism and it plays
fundamental roles in several vital physiological
processes. GKs are involved in the entry of external
glycerol into cellular metabolism. They catalyze the
rate-limiting step in glycerol metabolism by
transferring a phosphate from ATP to glycerol thus
producing glycerol 3-phosphate (G3P) in the cytoplasm.
Human GK deficiency, called hyperglycerolemia, is an
X-linked recessive trait associated with psychomotor
retardation, osteoporosis, spasticity, esotropia, and
bone fractures. Under different conditions, GKs from
different species may exist in different oligomeric
states. The monomer of GKs is composed of two large
domains separated by a deep cleft that forms the active
site. This model includes both the N-terminal domain,
which adopts a ribonuclease H-like fold, and the
structurally related C-terminal domain. The high
affinity ATP binding site of GKs is created only by a
substrate-induced conformational change. Based on
sequence similarity, some GK-like proteins from
metazoa, which have lost their GK enzymatic activity,
are also included in this CD. Members in this subfamily
belong to the FGGY family of carbohydrate kinases.
Length = 484
Score = 26.0 bits (58), Expect = 4.4
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 57 AVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAIN 97
+ + Q QP W DP + A V+ C+ A+
Sbjct: 25 SSHQVEHEQIYPQPGWVEHDP----EEIWANVVQCIEEALK 61
>gnl|CDD|227470 COG5141, COG5141, PHD zinc finger-containing protein [General
function prediction only].
Length = 669
Score = 26.1 bits (57), Expect = 4.4
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 97 NCYNKYHLTCS 107
NC YH+TC+
Sbjct: 323 NCTRAYHVTCA 333
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal
binding domain. It has been suggested that this gene
family be designated tps (for terpene synthase). It has
been split into six subgroups on the basis of
phylogeny, called tpsa-tpsf. tpsa includes
vetispiridiene synthase, 5-epi- aristolochene synthase,
and (+)-delta-cadinene synthase. tpsb includes
(-)-limonene synthase. tpsc includes kaurene synthase
A. tpsd includes taxadiene synthase, pinene synthase,
and myrcene synthase. tpse includes kaurene synthase B.
tpsf includes linalool synthase.
Length = 270
Score = 25.8 bits (57), Expect = 5.3
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 75 CDPPYSAVRLLAAVITCLLTAINCY 99
+P YS R+ AA LLT I+
Sbjct: 55 FEPQYSDARIAAAKTAALLTVIDDT 79
>gnl|CDD|236695 PRK10439, PRK10439, enterobactin/ferric enterobactin esterase;
Provisional.
Length = 411
Score = 25.7 bits (57), Expect = 5.3
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 55 GNAVTALTFAQYILQPIWPHCDPPYSAVRLL 85
G+AV+AL Q LQP W D P S + +
Sbjct: 153 GHAVSALEMPQAPLQPGWDRPDAPESPAKEI 183
>gnl|CDD|237929 PRK15238, PRK15238, inner membrane transporter YjeM; Provisional.
Length = 496
Score = 25.7 bits (57), Expect = 5.5
Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 24 SGGDYAYINEAFGPLPAFL--YMWVALFVI 51
GG Y+++N++ GP AF+ +MW A ++I
Sbjct: 69 KGGIYSWMNKSVGPKFAFIGTFMWFASYII 98
>gnl|CDD|219733 pfam08163, NUC194, NUC194 domain. This is domain B in the
catalytic subunit of DNA-dependent protein kinases.
Length = 394
Score = 25.5 bits (56), Expect = 6.1
Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 24/110 (21%)
Query: 2 LTLREAYYRMFPPESLGTMIPKS--GGDYAYINEAFGPLP---------AFLYMWVALFV 50
+ + Y++ E + +PK D + IN+A+ A + + F
Sbjct: 55 IIKKMGCYKLI--EVYYSRLPKDILYSDDSKINQAYYGSSKTEGNELTKALIKLAHDAFS 112
Query: 51 IMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCYN 100
TG + +Y HC +A L A+I+C T + Y+
Sbjct: 113 ENMTGESQLLELRRKY-------HC----AAYNALIALISCTFTELKFYH 151
>gnl|CDD|198367 cd07795, FGGY_ScGut1p_like, Saccharomyces cerevisiae Gut1p and
related proteins; belongs to the FGGY family of
carbohydrate kinases. This subgroup corresponds to a
small group of fungal glycerol kinases (GK), including
Saccharomyces cerevisiae Gut1p/YHL032Cp, which
phosphorylates glycerol to glycerol-3-phosphate in the
cytosol. Glycerol utilization has been considered as
the sole source of carbon and energy in S. cerevisiae,
and is mediated by glycerol kinase and glycerol
3-phosphate dehydrogenase, which is encoded by the GUT2
gene. Members in this family show high similarity to
their prokaryotic and eukaryotic homologs. GKs belong
to the FGGY family of carbohydrate kinases, the
monomers of which contain two large domains, which are
separated by a deep cleft that forms the active site.
This model includes both the N-terminal domain, which
adopts a ribonuclease H-like fold, and the structurally
related C-terminal domain.
Length = 496
Score = 25.5 bits (56), Expect = 6.2
Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 61 LTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAIN 97
+ F+Q P W DP ++++V+ C+ +A+
Sbjct: 31 IEFSQIYPHPGWHEHDPE----EIVSSVVQCIASALK 63
>gnl|CDD|197296 cd09200, PLDc_pPLDbeta_2, Catalytic domain, repeat 2, of plant
beta-type phospholipase D. Catalytic domain, repeat 2,
of plant beta-type phospholipase D (PLDbeta, EC
3.1.4.4). Plant PLDbeta is a phosphatidylinositol
4,5-bisphosphate (PIP2)-dependent PLD that possesses a
regulatory calcium-dependent phospholipid-binding C2
domain in the N-terminus and requires nanomolar calcium
and cytosolic factors for optimal activity. The C2
domain is unique to plant PLDs and is not present in
animal or fungal PLDs. Sequence analysis shows that
plant PLDbeta is evolutionarily divergent from
alpha-type plant PLD, and plant PLDbeta is more closely
related to mammalian and yeast PLDs than to plant
PLDalpha. Like other PLD enzymes, the monomer of plant
PLDbeta consists of two catalytic domains, each of
which contains one copy of the conserved HKD motif
(H-x-K-x(4)-D, where x represents any amino acid
residue). Two HKD motifs from two domains form a single
active site. Plant PLDbeta may utilize a common
two-step ping-pong catalytic mechanism involving an
enzyme-substrate intermediate to cleave phosphodiester
bonds. The two histidine residues from the two HKD
motifs play key roles in the catalysis. Upon substrate
binding, a histidine residue from one HKD motif could
function as the nucleophile, attacking the
phosphodiester bond to create a covalent
phosphohistidine intermediate, while the other
histidine residue from the second HKD motif could serve
as a general acid, stabilizing the leaving group.
Length = 211
Score = 25.3 bits (55), Expect = 6.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 63 FAQYILQPIWPHCDPPYSAVR 83
FA YI+ P+WP P +AV+
Sbjct: 68 FAVYIVIPMWPEGVPTGAAVQ 88
>gnl|CDD|234638 PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase;
Provisional.
Length = 344
Score = 25.5 bits (57), Expect = 6.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 30 YINEAFGPLPAFLYMWVALFVIMPTGNAV 58
+ + L LY+ A FVI+ T NAV
Sbjct: 147 FFKDLSLDLGVILYIPFAYFVIVGTSNAV 175
>gnl|CDD|227333 COG5000, NtrY, Signal transduction histidine kinase involved in
nitrogen fixation and metabolism regulation [Signal
transduction mechanisms].
Length = 712
Score = 25.5 bits (56), Expect = 6.9
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 40 AFLYMWVALFVIMPTGNAVTALTFAQYILQPI 71
A LY+ AL V++ TA+ FA+ I++PI
Sbjct: 280 ALLYLSTALLVLLAA--IWTAIAFARRIVRPI 309
>gnl|CDD|236640 PRK10003, PRK10003, ferric-rhodotorulic acid outer membrane
transporter; Provisional.
Length = 729
Score = 25.6 bits (56), Expect = 7.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 15 ESLGTMIPKSGGDYAY 30
+S GT IP S G+ AY
Sbjct: 566 QSTGTPIPGSNGETAY 581
>gnl|CDD|130302 TIGR01235, pyruv_carbox, pyruvate carboxylase. This enzyme plays a
role in gluconeogensis but not glycolysis [Energy
metabolism, Glycolysis/gluconeogenesis].
Length = 1143
Score = 25.6 bits (56), Expect = 7.5
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 5/29 (17%)
Query: 20 MIPKSGGDYAYINEAFGPL-----PAFLY 43
M PK D+A + +GP+ PAF Y
Sbjct: 977 MYPKVFTDFAKARDTYGPVSVLPTPAFFY 1005
>gnl|CDD|215202 PLN02352, PLN02352, phospholipase D epsilon.
Length = 758
Score = 25.3 bits (55), Expect = 7.8
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 63 FAQYILQPIWPHCDP 77
FA YIL P+WP P
Sbjct: 513 FAVYILIPMWPEGVP 527
>gnl|CDD|239150 cd02749, Macro, Macro domain, a high-affinity ADP-ribose binding
module found in a variety of proteins as a stand-alone
domain or in combination with other domains like in
histone macroH2A and some PARPs (poly ADP-ribose
polymerases). Some macro domains recognize poly
ADP-ribose as a ligand. Previously identified as
displaying an Appr-1"-p (ADP-ribose-1"-monophosphate)
processing activity, the macro domain may play roles in
distinct ADP-ribose pathways, such as the
ADP-ribosylation of proteins, an important
post-translational modification which occurs in DNA
repair, transcription, chromatin biology, and long-term
memory formation, among other processes.
Length = 147
Score = 25.0 bits (55), Expect = 8.2
Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 8/85 (9%)
Query: 20 MIPKSGGDYAY-INEAFGPLPAFLYMWVALFVIMPTGNAVTALTF----AQYILQ---PI 71
+ GG I++ G + + + G AV + A+Y++ P
Sbjct: 24 SSGRDGGGVNLAISKKAGKELEEESKKLRKELELQVGEAVLTKGYNLDGAKYLIHIVGPK 83
Query: 72 WPHCDPPYSAVRLLAAVITCLLTAI 96
+ + + L A CL A
Sbjct: 84 YNQGNNKAAFELLKNAYENCLKEAE 108
>gnl|CDD|131585 TIGR02533, type_II_gspE, type II secretion system protein E. This
family describes GspE, the E protein of the type II
secretion system, also called the main terminal branch
of the general secretion pathway. This model separates
GspE from the PilB protein of type IV pilin biosynthesis
[Protein fate, Protein and peptide secretion and
trafficking, Cellular processes, Pathogenesis].
Length = 486
Score = 25.4 bits (56), Expect = 8.2
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 32 NEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA 81
N+A G + + M V F++ + V AQ +++ + PHC PY A
Sbjct: 346 NDAAGAVTRLIDMGVEPFLLASSLLGV----LAQRLVRRLCPHCKEPYEA 391
>gnl|CDD|129984 TIGR00906, 2A0303, cationic amino acid transport permease.
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 557
Score = 25.2 bits (55), Expect = 8.4
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 18 GTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVT---ALTFAQYILQPI 71
G +PK+G Y Y G L AF+ W + + AV + F + + + I
Sbjct: 86 GARVPKAGSAYLYSYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQI 142
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.141 0.468
Gapped
Lambda K H
0.267 0.0732 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,638,802
Number of extensions: 479323
Number of successful extensions: 656
Number of sequences better than 10.0: 1
Number of HSP's gapped: 653
Number of HSP's successfully gapped: 61
Length of query: 108
Length of database: 10,937,602
Length adjustment: 73
Effective length of query: 35
Effective length of database: 7,699,760
Effective search space: 269491600
Effective search space used: 269491600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.2 bits)