RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy931
         (108 letters)



>d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 176

 Score = 24.5 bits (53), Expect = 2.5
 Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 4/44 (9%)

Query: 38  LPAFLYMWVALFVIMPTGN----AVTALTFAQYILQPIWPHCDP 77
           L   + +  A   ++ +      A+ A+  AQ + Q +W     
Sbjct: 77  LSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSY 120


>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
           (G) domain {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 341

 Score = 24.7 bits (53), Expect = 2.7
 Identities = 5/20 (25%), Positives = 8/20 (40%)

Query: 62  TFAQYILQPIWPHCDPPYSA 81
            F  +IL PI+       + 
Sbjct: 270 AFNMFILDPIFRLFTAIMNF 289


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.141    0.468 

Gapped
Lambda     K      H
   0.267   0.0576    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 431,838
Number of extensions: 17998
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 8
Length of query: 108
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 40
Effective length of database: 1,473,956
Effective search space: 58958240
Effective search space used: 58958240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.2 bits)